BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SAG1561
(405 letters)
Database: nr
1,487,057 sequences; 479,114,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22537703|ref|NP_688554.1| PTS system, IIC component, putative... 639 0.0
gi|25011654|ref|NP_736049.1| Unknown [Streptococcus agalactiae N... 637 0.0
gi|24378691|ref|NP_720646.1| hypothetical protein [Streptococcus... 226 4e-58
gi|29375593|ref|NP_814747.1| PTS system, IIC component [Enteroco... 91 3e-17
gi|28377941|ref|NP_784833.1| cellobiose PTS, EIIC [Lactobacillus... 90 7e-17
gi|26247813|ref|NP_753853.1| Putative conserved protein [Escheri... 88 2e-16
gi|22991443|ref|ZP_00036165.1| hypothetical protein [Enterococcu... 84 3e-15
gi|23037335|ref|ZP_00069545.1| hypothetical protein [Oenococcus ... 84 5e-15
gi|23002737|ref|ZP_00046410.1| hypothetical protein [Lactobacill... 82 2e-14
gi|15672156|ref|NP_266330.1| cellobiose-specific PTS system IIC ... 81 3e-14
gi|16801965|ref|NP_472233.1| similar to PTS cellobiose-specific ... 81 4e-14
gi|23024865|ref|ZP_00064056.1| hypothetical protein [Leuconostoc... 78 3e-13
gi|22992591|ref|ZP_00037226.1| hypothetical protein [Enterococcu... 73 7e-12
gi|22992587|ref|ZP_00037222.1| hypothetical protein [Enterococcu... 73 8e-12
gi|16799469|ref|NP_469737.1| similar to PTS betaglucoside-specif... 73 1e-11
gi|16801916|ref|NP_472184.1| similar to PTS system, cellobiose-s... 72 2e-11
gi|16804745|ref|NP_466230.1| similar to PTS system, cellobiose-s... 71 3e-11
gi|16764664|ref|NP_460279.1| PTS family, sugar specific enzyme I... 70 5e-11
gi|16760582|ref|NP_456199.1| PTS system, cellobiose-specific IIC... 70 5e-11
gi|30020525|ref|NP_832156.1| PTS system, diacetylchitobiose-spec... 70 5e-11
gi|15901843|ref|NP_346447.1| PTS system, IIC component [Streptoc... 70 7e-11
gi|16129691|ref|NP_416251.1| CelB [Escherichia coli K12] >gnl|BL... 70 9e-11
gi|24112864|ref|NP_707374.1| PEP-dependent phosphotransferase en... 70 1e-10
gi|1742834|dbj|BAA15518.1| PTS system, cellobiose-specific IIC c... 69 1e-10
gi|26247990|ref|NP_754030.1| PTS system, cellobiose-specific IIC... 69 1e-10
gi|15802148|ref|NP_288170.1| PEP-dependent phosphotransferase en... 69 1e-10
gi|15831697|ref|NP_310470.1| PEP-dependent phosphotransferase en... 69 1e-10
gi|15903876|ref|NP_359426.1| Phosphotransferase system system, c... 69 1e-10
gi|16802418|ref|NP_463903.1| similar to PTS betaglucoside-specif... 69 2e-10
gi|29375599|ref|NP_814753.1| PTS system, IIC component [Enteroco... 69 2e-10
gi|15902275|ref|NP_357825.1| Phosphotransferase system sugar-spe... 69 2e-10
gi|16799112|ref|NP_469380.1| similar to PTS system, cellobiose-s... 69 2e-10
gi|21400333|ref|NP_656318.1| PTS_EIIC, Phosphotransferase system... 68 2e-10
gi|16802082|ref|NP_463567.1| similar to PTS system, cellobiose-s... 68 3e-10
gi|21911286|ref|NP_665554.1| putative PTS system sugar-specific ... 67 4e-10
gi|28377341|ref|NP_784233.1| cellobiose PTS, EIIC [Lactobacillus... 67 4e-10
gi|15675820|ref|NP_269994.1| putative PTS system, enzyme IIC com... 67 5e-10
gi|19746933|ref|NP_608069.1| putative PTS system, enzyme IIC com... 67 5e-10
gi|15900185|ref|NP_344789.1| PTS system, IIC component [Streptoc... 67 5e-10
gi|22536513|ref|NP_687364.1| PTS system, cellobiose-specific IIC... 66 1e-09
gi|21039021|dbj|BAB92991.1| N,N'-diacetylchitobiose utilization,... 66 1e-09
gi|23003051|ref|ZP_00046721.1| hypothetical protein [Lactobacill... 65 2e-09
gi|16804721|ref|NP_466206.1| similar to cellobiose phosphotransf... 65 2e-09
gi|28379438|ref|NP_786330.1| cellobiose PTS, EIIC [Lactobacillus... 65 2e-09
gi|16804820|ref|NP_466305.1| similar to cellobiose phosphotransf... 65 3e-09
gi|29375736|ref|NP_814890.1| PTS system, cellobiose-specific IIC... 64 4e-09
gi|16122884|ref|NP_406197.1| PTS system, cellobiose-specific IIC... 64 4e-09
gi|23099729|ref|NP_693195.1| PTS system cellobiose-specific enzy... 64 5e-09
gi|23003182|ref|ZP_00046850.1| hypothetical protein [Lactobacill... 64 5e-09
gi|16801892|ref|NP_472160.1| similar to cellobiose phosphotransf... 64 6e-09
gi|22991301|ref|ZP_00036036.1| hypothetical protein [Enterococcu... 64 7e-09
gi|23100216|ref|NP_693683.1| PTS system cellobiose-specific enzy... 63 8e-09
gi|15672398|ref|NP_266572.1| cellobiose-specific PTS system IIC ... 63 8e-09
gi|29376094|ref|NP_815248.1| PTS system, IIC component, putative... 63 1e-08
gi|28377339|ref|NP_784231.1| cellobiose PTS, EIIC [Lactobacillus... 62 2e-08
gi|21910536|ref|NP_664804.1| putative PTS system IIC component [... 62 2e-08
gi|19746299|ref|NP_607435.1| putative PTS system IIC component [... 62 2e-08
gi|16080909|ref|NP_391737.1| phosphotransferase system (PTS) lic... 62 3e-08
gi|16801521|ref|NP_471789.1| similar to PTS system, cellobiose-s... 61 3e-08
gi|15902326|ref|NP_357876.1| Phosphotransferase system sugar-spe... 61 4e-08
gi|15900243|ref|NP_344847.1| PTS system, IIC component [Streptoc... 61 4e-08
gi|15672800|ref|NP_266974.1| cellobiose-specific PTS system IIC ... 60 7e-08
gi|15900389|ref|NP_344993.1| PTS system, cellobiose-specific IIC... 60 8e-08
gi|15902465|ref|NP_358015.1| Phosphotransferase system sugar-spe... 60 8e-08
gi|23037179|ref|ZP_00069391.1| hypothetical protein [Oenococcus ... 60 9e-08
gi|23003439|ref|ZP_00047102.1| hypothetical protein [Lactobacill... 59 1e-07
gi|23023365|ref|ZP_00062602.1| hypothetical protein [Leuconostoc... 58 3e-07
gi|95695|pir||S10871 phosphotransferase system enzyme II (EC 2.7... 58 3e-07
gi|24379977|ref|NP_721932.1| putative PTS system, cellobiose-spe... 58 3e-07
gi|21397676|ref|NP_653661.1| PTS_EIIC, Phosphotransferase system... 58 3e-07
gi|28379823|ref|NP_786715.1| cellobiose PTS, EIIC [Lactobacillus... 58 4e-07
gi|23037269|ref|ZP_00069479.1| hypothetical protein [Oenococcus ... 57 4e-07
gi|29374931|ref|NP_814084.1| PTS system, IIC component [Enteroco... 57 5e-07
gi|28901284|ref|NP_800939.1| hypothetical protein [Vibrio paraha... 57 5e-07
gi|30023248|ref|NP_834879.1| PTS system, lichenan oligosaccharid... 57 6e-07
gi|23003143|ref|ZP_00046811.1| hypothetical protein [Lactobacill... 57 7e-07
gi|29377728|ref|NP_816882.1| PTS system, IIC component [Enteroco... 55 2e-06
gi|15641224|ref|NP_230856.1| conserved hypothetical protein [Vib... 55 2e-06
gi|16080890|ref|NP_391718.1| alternate gene name: ipa-16d~simila... 55 3e-06
gi|15900393|ref|NP_344997.1| PTS system, lactose-specific IIBC c... 54 3e-06
gi|27366325|ref|NP_761853.1| FOG: EAL domain [Vibrio vulnificus ... 54 5e-06
gi|15902469|ref|NP_358019.1| Phosphotransferase system sugar-spe... 54 6e-06
gi|2499991|sp|Q45400|PTCC_BACST PTS system, cellobiose-specific ... 54 6e-06
gi|15896217|ref|NP_349566.1| PTS system lactose-specific enzyme ... 54 7e-06
gi|11497019|ref|NP_046990.1| PTS system, cellobiose-specific IIC... 54 7e-06
gi|131495|sp|P24400|PTLB_LACCA PTS system, lactose-specific IIBC... 53 9e-06
gi|1771122|emb|CAB02556.1| LacE [Lactobacillus casei] 53 1e-05
gi|20806849|ref|NP_622020.1| Phosphotransferase system cellobios... 52 2e-05
gi|23003446|ref|ZP_00047109.1| hypothetical protein [Lactobacill... 52 2e-05
gi|22991068|ref|ZP_00035831.1| hypothetical protein [Enterococcu... 52 3e-05
gi|15893677|ref|NP_347026.1| PTS cellobiose-specific component I... 51 4e-05
gi|22992208|ref|ZP_00036867.1| hypothetical protein [Enterococcu... 50 5e-05
gi|20807096|ref|NP_622267.1| Phosphotransferase system cellobios... 50 6e-05
gi|21397671|ref|NP_653656.1| PTS_EIIC, Phosphotransferase system... 50 7e-05
gi|16077650|ref|NP_388464.1| similar to cellobiose phosphotransf... 50 7e-05
gi|32030775|ref|ZP_00133543.1| hypothetical protein [Haemophilus... 50 8e-05
>gi|22537703|ref|NP_688554.1| PTS system, IIC component, putative
[Streptococcus agalactiae 2603V/R]
gi|22534592|gb|AAN00427.1|AE014263_6 PTS system, IIC component,
putative [Streptococcus agalactiae 2603V/R]
Length = 405
Score = 639 bits (1648), Expect = 0.0
Identities = 405/405 (100%), Positives = 405/405 (100%)
Query: 1 MHSTIYKCHHCRYLIYKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWL 60
MHSTIYKCHHCRYLIYKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWL
Sbjct: 1 MHSTIYKCHHCRYLIYKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWL 60
Query: 61 YTVSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLLTSVVPGT 120
YTVSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLLTSVVPGT
Sbjct: 61 YTVSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLLTSVVPGT 120
Query: 121 DYHYPSQPIWLMLALISYLFIFLTRLLQNRHHIFQYSMLAILLLISSILSHILYRYPNID 180
DYHYPSQPIWLMLALISYLFIFLTRLLQNRHHIFQYSMLAILLLISSILSHILYRYPNID
Sbjct: 121 DYHYPSQPIWLMLALISYLFIFLTRLLQNRHHIFQYSMLAILLLISSILSHILYRYPNID 180
Query: 181 LEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNA 240
LEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNA
Sbjct: 181 LEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNA 240
Query: 241 ALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTP 300
ALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTP
Sbjct: 241 ALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTP 300
Query: 301 LIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLL 360
LIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLL
Sbjct: 301 LIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLL 360
Query: 361 FGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKIT 405
FGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKIT
Sbjct: 361 FGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKIT 405
>gi|25011654|ref|NP_736049.1| Unknown [Streptococcus agalactiae
NEM316]
gi|24413194|emb|CAD47273.1| Unknown [Streptococcus agalactiae
NEM316]
Length = 405
Score = 637 bits (1642), Expect = 0.0
Identities = 404/405 (99%), Positives = 404/405 (99%)
Query: 1 MHSTIYKCHHCRYLIYKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWL 60
MHSTIYKCHHCRYLIYKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWL
Sbjct: 1 MHSTIYKCHHCRYLIYKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWL 60
Query: 61 YTVSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLLTSVVPGT 120
YTVSNTLYDLSHLLIYFMASYFVASLVWR LSNQTKESFSASLLGFATVWLLLTSVVPGT
Sbjct: 61 YTVSNTLYDLSHLLIYFMASYFVASLVWRGLSNQTKESFSASLLGFATVWLLLTSVVPGT 120
Query: 121 DYHYPSQPIWLMLALISYLFIFLTRLLQNRHHIFQYSMLAILLLISSILSHILYRYPNID 180
DYHYPSQPIWLMLALISYLFIFLTRLLQNRHHIFQYSMLAILLLISSILSHILYRYPNID
Sbjct: 121 DYHYPSQPIWLMLALISYLFIFLTRLLQNRHHIFQYSMLAILLLISSILSHILYRYPNID 180
Query: 181 LEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNA 240
LEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNA
Sbjct: 181 LEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNA 240
Query: 241 ALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTP 300
ALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTP
Sbjct: 241 ALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTP 300
Query: 301 LIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLL 360
LIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLL
Sbjct: 301 LIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLL 360
Query: 361 FGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKIT 405
FGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKIT
Sbjct: 361 FGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKIT 405
>gi|24378691|ref|NP_720646.1| hypothetical protein [Streptococcus
mutans UA159]
gi|24376554|gb|AAN57952.1|AE014868_14 hypothetical protein
[Streptococcus mutans UA159]
Length = 406
Score = 226 bits (577), Expect = 4e-58
Identities = 159/399 (39%), Positives = 240/399 (59%), Gaps = 5/399 (1%)
Query: 9 HHCRYLIYKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWLYTVSNTLY 68
+ CR L+Y+S +FP ALI+S+ ++Q L +S SF A T +YKN+W+++ +
Sbjct: 5 YECRSLLYESMHQVFPLALIYSFSVLIQNLFLSPTSFFAVTAGLKLYKNKWIFSFTEHFL 64
Query: 69 DLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLLTSVVPGTDYHYPSQP 128
+ + +++ + +A + L +SF SL+ F VWLL V D H +QP
Sbjct: 65 EFNRIVLCLLVGLCMAYFIRLLLKRHQIDSFIPSLISFLLVWLLFGEVNFDVDNHI-AQP 123
Query: 129 IWL---MLALISYLFIFLTRLLQNRH-HIFQYSMLAILLLISSILSHILYRYPNIDLEYL 184
IWL + AL+ Y L R L++ H + ++ L++ + I+ Y+ P +++ Y
Sbjct: 124 IWLFQVLGALVFYGAALLNRKLKHHHFQLLKWLFLSLFVYITLFWGITTYKIPFLNINYY 183
Query: 185 IQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQ 244
+Q FS LG+GP L I+ S + GL VP++L P +VVSENL++ L+
Sbjct: 184 VQEGFSNLLGNGPSHLFLIIFLSFGGVIFFSLGLIVPEVLASPNFSLNVVSENLDSVLNH 243
Query: 245 HTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFD 304
K+ +L+T YTV+++FA++GG+G+LL+L +A+L SR+ YK+ L+ PL+FD
Sbjct: 244 SIHKVSHLFTLYTVQDAFALYGGVGLLLALGIAILLISRRYHINTSYKMAGLSFIPLVFD 303
Query: 305 QNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFL 364
Q LP L+ P++ QP+L IPM+LTT+ AE GA L + ++PAVY VP+GTP+ LFGFL
Sbjct: 304 QPLPLLLSFPILFQPLLLIPMLLTTLVAELLGACCLAIGLINPAVYEVPTGTPNFLFGFL 363
Query: 365 ASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEK 403
ASNGDWRYL VT IILV+ IY PFVKI +E EK
Sbjct: 364 ASNGDWRYLLVTIIILVISVMIYLPFVKIVLFREVLNEK 402
>gi|29375593|ref|NP_814747.1| PTS system, IIC component
[Enterococcus faecalis V583]
gi|29343054|gb|AAO80817.1| PTS system, IIC component [Enterococcus
faecalis V583]
Length = 487
Score = 91.3 bits (225), Expect = 3e-17
Identities = 54/132 (40%), Positives = 75/132 (55%), Gaps = 3/132 (2%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
++FA FGG G + L +A+L S++ +Y + L+L P IF+ N P + GLPV+L P
Sbjct: 344 DAFAWFGGSGGTIVLIIAILLFSKR---ADYLTVGKLSLGPGIFNINEPIMFGLPVVLNP 400
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
I+FIP V+ + A G + YL V P V TP LL FLA+ DWR V +
Sbjct: 401 IMFIPFVIAPLVATTIGWVATYLGLVAPVSQQVAWVTPPLLLSFLATGADWRAPIVALVC 460
Query: 380 LVVGFFIYRPFV 391
+VV F I+ PFV
Sbjct: 461 MVVTFLIWTPFV 472
>gi|28377941|ref|NP_784833.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
gi|28270775|emb|CAD63680.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
Length = 435
Score = 90.1 bits (222), Expect = 7e-17
Identities = 114/409 (27%), Positives = 184/409 (44%), Gaps = 40/409 (9%)
Query: 22 IFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWL-----YTVSNTLYDLS----- 71
+FPFAL+ +++ + + + + FL Y + WL T+ +LS
Sbjct: 32 LFPFALVGAYVSFMNQAIFQRNGFLNHI----YYLSHWLPGFKHLATYTTMLNLSINGIL 87
Query: 72 HLLIYFMASYFVASLVWRD-LSNQTKESFSASLLGFATVWLLLTSVVPGTDY---HYPSQ 127
++ F A+ FVA RD L + S +L + G+ + + +Q
Sbjct: 88 AVIAAFSAANFVARSAQRDNLLAGLTAAISFIMLNINYNFFSTQGQPAGSRFLEDNLGTQ 147
Query: 128 PIWLML---ALISYLFIFLTRL------------LQNRHHIFQYSMLAILLLISSILSHI 172
I+L L L +LF LTR L R H ++A LL+ S+I +
Sbjct: 148 GIFLALLVGLLTGWLFSHLTRYPHIHQEIETQTHLLARAHANWLPIVAALLVFSAIGYGV 207
Query: 173 LYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFS 232
+ L L F+ + L+ I+ + L+ L G+ P + F S S
Sbjct: 208 SFVSKG-GLNGLFYAVFTLPFSNPGASLLAIIGVASLSNLYWLIGIIGP-VDFSGNSTTS 265
Query: 233 VVSENLNAALSQHTD-KIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYY 291
V +NL AL + P T +T+ ++FA GG G+ L+L +A+L+ SR ++NY
Sbjct: 266 TV-QNLEYALQHGSAWGAPNPVTLHTLFDAFANVGGPGMTLALLIAILWRSR---NRNYR 321
Query: 292 KLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYT 351
+ + P++F+ N P LVGLP+ PIL IP +L + + L L+++ P VY
Sbjct: 322 TVAKTSALPVLFNINQPLLVGLPIAYSPILAIPFLLAPLASMVITWCALKLQWMPPVVYP 381
Query: 352 VPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQ 400
V P L G+L + GDWR V+ I + V +Y PFV +A EE+
Sbjct: 382 VGRTMPGFLTGWLGTGGDWRAFIVSLINIAVATAVYLPFVLLANQVEEE 430
>gi|26247813|ref|NP_753853.1| Putative conserved protein
[Escherichia coli CFT073]
gi|26108215|gb|AAN80415.1|AE016760_274 Putative conserved protein
[Escherichia coli CFT073]
Length = 453
Score = 88.2 bits (217), Expect = 2e-16
Identities = 61/196 (31%), Positives = 102/196 (51%), Gaps = 8/196 (4%)
Query: 200 LIPIMLWSILAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQH--TDKIPYLYTF 255
+ +++ + FL + G+ P+ R + ENL+ A +QH T PY T+
Sbjct: 249 IFAVIILGAVGNFLWVLGIHGPNTTSAIRETVFSEANLENLSWA-AQHGTTWGAPYPITW 307
Query: 256 YTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPV 315
++ ++FA GG G+ L L LA+ S++ + ++ K++ + P IF+ N P + GLP+
Sbjct: 308 TSINDAFANCGGSGMTLGLLLAIFIASKRAEYRDLAKMSFI---PGIFNINEPIMFGLPI 364
Query: 316 ILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPV 375
+L PI+ +P ++ I A G + ++ + P Y VP TP L FL + G+W L V
Sbjct: 365 VLNPIMMVPFIMVPIVNCAIGYFFVSMEIIPPVAYAVPWTTPGPLIAFLGTGGNWLALLV 424
Query: 376 TAIILVVGFFIYRPFV 391
+ L V IY PFV
Sbjct: 425 GFLCLGVATMIYLPFV 440
>gi|22991443|ref|ZP_00036165.1| hypothetical protein [Enterococcus
faecium]
Length = 342
Score = 84.3 bits (207), Expect = 3e-15
Identities = 50/132 (37%), Positives = 73/132 (54%), Gaps = 3/132 (2%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
++FA FGG G + L +A+L S++ +Y + L++ P IF+ N P + GLP++L
Sbjct: 200 DAFAWFGGSGGTIVLLIAILIFSKR---ADYLTVAKLSIGPGIFNINEPVMFGLPIVLNA 256
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
I+FIP ++ + A A G YL V P V P L FLA+ DWR VT +
Sbjct: 257 IMFIPFLIAPVVATAIGWTATYLGLVAPVSQQVTWVVPPFLLSFLATGADWRAPIVTLVC 316
Query: 380 LVVGFFIYRPFV 391
+VV F I+ PFV
Sbjct: 317 MVVTFLIWAPFV 328
>gi|23037335|ref|ZP_00069545.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 391
Score = 84.0 bits (206), Expect = 5e-15
Identities = 98/379 (25%), Positives = 166/379 (42%), Gaps = 13/379 (3%)
Query: 16 YKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWLYTVSNTLYDLS--HL 73
Y S K+ P ++ ++++ + ++ +SF + T D+S L
Sbjct: 11 YISLKNFLPIIVLSVFLQLFINIFLTPNSFFLTVFHLKFFAFLEPLNRLATFADISFRRL 70
Query: 74 LIYFMASYFVASLVWRDLSNQTKESFS-ASLLGFATVWLLLTSVVPGTDYHYPSQPIWLM 132
L+ A +F + NQ + +L F +WL + P+ L+
Sbjct: 71 LMPLFAYFFS-----NQIENQKGINLPLIALSNFIVIWLFSNNQFLLQGSGQNLLPVSLI 125
Query: 133 LALISYLFIFLTRLLQNRHHIFQYSMLAILLLISSILSHILYRYPNIDLEYLIQNHFSQW 192
+ ++ L I ++ I Q +L+ +LI + + I + N Q
Sbjct: 126 VFALTILMIKISN-WHKASSISQRYLLSFCILIIACVFAITNIFSNFQFVNAGQWLNDNL 184
Query: 193 LGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYL 252
+ D + L ++ A L GL +P L + NL A+L + T IP
Sbjct: 185 ISDLSTNFYGVALLTVCASLLLWMGLPLPSCLRQTSFSLPAAVNNLGASLDKKTSTIPNP 244
Query: 253 YTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVG 312
+ +T+ +SFA+FGG+ + L+L + +L S+ Q KL + L P + + N G
Sbjct: 245 LSLHTLYDSFAIFGGVSMSLALIIVLLIRSKNSQK----KLAQIALIPSLLNNNQILNFG 300
Query: 313 LPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRY 372
LP L P+L IP +L + L L L ++PAVY +P TP++ FL+SNGDWR
Sbjct: 301 LPFFLNPLLLIPAILAPLSGILLSGLALKLNLINPAVYQLPKNTPNIFTAFLSSNGDWRT 360
Query: 373 LPVTAIILVVGFFIYRPFV 391
+ + +IL + F IY PFV
Sbjct: 361 ILLVLLILGISFLIYLPFV 379
>gi|23002737|ref|ZP_00046410.1| hypothetical protein [Lactobacillus
gasseri]
Length = 443
Score = 81.6 bits (200), Expect = 2e-14
Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 18/244 (7%)
Query: 159 LAILLLISSILSHILYRYPNIDLEYLIQNHFSQW-----------LGDGPHQLIPIMLWS 207
+A LI +LS + + N + L +F W LG G ++ +
Sbjct: 186 VAFSTLIPILLSVFIVGFVNYAFQRLTGTYFGNWLLATIQRPLVNLGQGFGVVLLVTFLV 245
Query: 208 ILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGG 267
+ F ++G+ +L + EN+N ++++++PY++ + N FA FGG
Sbjct: 246 QIFWFFGINGI---SVLTPVMDSLWLTPENINVTAVRNSERVPYIWVRDSF-NVFAWFGG 301
Query: 268 IGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVL 327
G L L +A+L S++ K+Y + + + P IF+ N P + GLPV+ P+ IP V+
Sbjct: 302 AGGTLVLIIAILMFSKR---KDYRTIAKMAVAPGIFNINEPIIFGLPVVFNPVYLIPFVV 358
Query: 328 TTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIY 387
+ + V+P VP+ P L+ FLA N DWR + + I +V+ I+
Sbjct: 359 APLVNVSLAYWATTAGLVNPVQIFVPTVMPPLIGPFLACNYDWRAIVLALINMVIALLIW 418
Query: 388 RPFV 391
PFV
Sbjct: 419 MPFV 422
>gi|15672156|ref|NP_266330.1| cellobiose-specific PTS system IIC
component [Lactococcus lactis subsp. lactis]
gi|25326279|pir||F86646 hypothetical protein celB [imported] -
Lactococcus lactis subsp. lactis (strain IL1403)
gi|12723026|gb|AAK04272.1|AE006255_2 cellobiose-specific PTS system
IIC component (EC 2.7.1.69) [Lactococcus lactis subsp.
lactis]
Length = 494
Score = 80.9 bits (198), Expect = 3e-14
Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 33/262 (12%)
Query: 163 LLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLS-----G 217
L I ++ +I+ + N + LI ++ ++ P Q++ ++S+L + L +S G
Sbjct: 237 LYIVGLIYYIIGKLTNDSVINLITHYIAE-----PFQILSQNIFSVLIVTLFVSVFWFFG 291
Query: 218 LFVPDIL-------FRPYS------YFSVVSENLNAALSQ-HTDKIPYL---YTFYTVKN 260
L P++L + P YF V S+ + +++ DK + Y V+
Sbjct: 292 LHGPNVLAPVLDGIWGPLGLNNQALYFQVHSQGIRDLIAKGAVDKAHAINGDYVNLWVRG 351
Query: 261 S---FAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVIL 317
S FA FGG G ++L +A++ S++ K+Y + L L P IF+ N P L GLPV+L
Sbjct: 352 SWDAFAWFGGSGGTITLVIAIILFSKR---KDYKIVGRLGLAPGIFNINEPVLFGLPVVL 408
Query: 318 QPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTA 377
I FIP + + + L VDP V VP TP ++ F+A+ DWR + +T
Sbjct: 409 NAIFFIPFAVAPLISVIIAYTATALHLVDPVVNAVPWVTPPIMNAFMATGFDWRAIVLTI 468
Query: 378 IILVVGFFIYRPFVKIAFAKEE 399
I L++ F I+ PFV A EE
Sbjct: 469 INLIITFVIWVPFVIAANKLEE 490
>gi|16801965|ref|NP_472233.1| similar to PTS cellobiose-specific
enzyme IIC [Listeria innocua]
gi|16804800|ref|NP_466285.1| similar to PTS cellobiose-specific
enzyme IIC [Listeria monocytogenes EGD-e]
gi|25326307|pir||AB1420 PTS cellobiose-specific enzyme IIC homolog
lmo2763 [imported] - Listeria monocytogenes (strain
EGD-e)
gi|25326319|pir||AC1795 PTS cellobiose-specific enzyme IIC homolog
lin2906 [imported] - Listeria innocua (strain Clip11262)
gi|16412263|emb|CAD00976.1| lmo2763 [Listeria monocytogenes]
gi|16415447|emb|CAC98131.1| lin2906 [Listeria innocua]
Length = 450
Score = 80.9 bits (198), Expect = 4e-14
Identities = 66/238 (27%), Positives = 117/238 (48%), Gaps = 8/238 (3%)
Query: 161 ILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFV 220
I+ ++ S++++++ L L+ L D + +++ +++ L + G+
Sbjct: 197 IITILFSVINYLITLIAPEGLNDLVYTVIQAPLKDMGTNVFSVIIIGLVSNLLWVLGIHG 256
Query: 221 PDIL--FRPYSYFSVVSENLNAALSQHTDK--IPYLYTFYTVKNSFAMFGGIGILLSLFL 276
P+ + R + +NL + ++QH PY T+ + + FA +GG G+ L L +
Sbjct: 257 PNTVAAIRDTIFTEPNLDNL-SYVAQHGSAWGAPYPATWAGLNDGFANYGGSGMTLGLLI 315
Query: 277 AVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFG 336
A+ SR+ +Y + L+L P IF+ N P + GLP++L PI+ IP ++T G
Sbjct: 316 AIFIASRR---ADYRDIAKLSLAPGIFNINEPVIFGLPIVLNPIMVIPFIITPAINTLIG 372
Query: 337 ALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIA 394
+ K + P Y VP TP L FL + G+W L V + L V IY PFV ++
Sbjct: 373 YFFISTKLIPPVAYQVPWTTPGPLIPFLGTGGNWLALLVGLLCLAVATVIYLPFVLVS 430
>gi|23024865|ref|ZP_00064056.1| hypothetical protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 317
Score = 78.2 bits (191), Expect = 3e-13
Identities = 84/333 (25%), Positives = 153/333 (45%), Gaps = 41/333 (12%)
Query: 73 LLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLLTSVVPGTDYHYPSQPIWLM 132
+L F+A+Y + ++ +D S+ + ++L +++ Y+ +
Sbjct: 24 ILTNFLATYLLFTVNTQDFSHNVSQYLVVTVL----------TLLSSESYYQYQRLFRKT 73
Query: 133 LALISYLFIFLTRLLQNRHHIFQ--YSMLAILLLISSILSHILYRYPNIDLEYLIQNHFS 190
L S F+ + + + + Q + LLISSILS N F+
Sbjct: 74 LQPYSARFLVWSAFILGLYFLVQPYVQQTTLQLLISSILS---------------SNFFT 118
Query: 191 QWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIP 250
++G ++L A L G+ +P+ L + + V +NL+ L +P
Sbjct: 119 TFVG--------LLLVGACAPVLYWLGIALPNELTSNQTTINAVVKNLDVILKNTHATLP 170
Query: 251 YLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFL 310
Y Y+V +F++ GGIG L++ +L+ + SK L LL++ P +F+ N
Sbjct: 171 YPENLYSVYGTFSLLGGIGNTLAISFLLLF----MSSKRKQNLGLLSVFPSLFNNNQLLY 226
Query: 311 VGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDW 370
GLP+ L+P++ +PM+L+++ G + + + PA +P+ P+LL FL S G
Sbjct: 227 FGLPLFLRPLMLVPMILSSVAGTLVGYVAIATHLIKPASLVIPNNAPNLLTAFLGS-GKL 285
Query: 371 RYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEK 403
L V AI+ + IY+PF+++ A E Q EK
Sbjct: 286 SSLIVVAIVFGLTVLIYKPFIELDNA-EVQNEK 317
>gi|22992591|ref|ZP_00037226.1| hypothetical protein [Enterococcus
faecium]
Length = 417
Score = 73.2 bits (178), Expect = 7e-12
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 234 VSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKL 293
+ N+NA + H+ F+ +SF GG G L L LA+ RK +K Y +
Sbjct: 251 IEANVNAIAAGHSAPFIVNKPFF---DSFVNLGGTGATLGLLLAIYLVGRK--NKPYMVV 305
Query: 294 TLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVP 353
T L++ P +F+ N P + GLP++L PI+FIP +LT + + V A P
Sbjct: 306 TNLSIAPGVFNINEPTMFGLPIVLNPIMFIPFILTPMVLVSVAYFATSTGLVPAATVMPP 365
Query: 354 SGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKI 404
TP ++ G LA+ + + A+ LV+ IY PFVK+A +E + E +
Sbjct: 366 WVTPPIIGGVLATKSIAGGV-LAAVNLVLSILIYLPFVKVATIQERRKEAL 415
>gi|22992587|ref|ZP_00037222.1| hypothetical protein [Enterococcus
faecium]
Length = 438
Score = 73.2 bits (178), Expect = 8e-12
Identities = 45/133 (33%), Positives = 71/133 (52%), Gaps = 3/133 (2%)
Query: 262 FAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPIL 321
+ GG G+ + L +AVL ++ K ++T L+L P IF+ N P + G+P++L PIL
Sbjct: 301 YMSMGGSGVTIGLLIAVLLVGKREDMK---QITKLSLAPGIFNINEPVIFGMPIMLNPIL 357
Query: 322 FIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILV 381
IP +LT + G L F AV VP P ++ +LA+ G+ + + ++
Sbjct: 358 AIPFILTPLITGTIGYFATALGFAAKAVVMVPWPMPPIVNAYLATAGNIGAVITQLVCII 417
Query: 382 VGFFIYRPFVKIA 394
V IY PFVK+A
Sbjct: 418 VSILIYLPFVKVA 430
>gi|16799469|ref|NP_469737.1| similar to PTS betaglucoside-specific
enzyme IIC component [Listeria innocua]
gi|25326326|pir||AI1481 PTS betaglucoside-specific enzyme IIC
component homolog lin0392 [imported] - Listeria innocua
(strain Clip11262)
gi|16412821|emb|CAC95625.1| lin0392 [Listeria innocua]
Length = 444
Score = 72.8 bits (177), Expect = 1e-11
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 10/173 (5%)
Query: 234 VSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKL 293
+ EN+ A + H + IP++ K++FA+ GG G + L +A+ ++ K+Y +
Sbjct: 276 MQENM-VAYANHQE-IPHIINM-AFKDTFAVMGGSGNTIGLLIAIFIFGKR---KDYKDI 329
Query: 294 TLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVP 353
+ L+ P +F+ + P + GLP++ P+L IP VL IF+ +++ V P
Sbjct: 330 SKLSAAPSLFNISEPIIFGLPIVFNPLLIIPFVLAPIFSLTTAYFATAAGWINHVVVQTP 389
Query: 354 SGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFV----KIAFAKEEQYE 402
TP ++ GFLA+ GDWR + II+V+ FIY PF+ K+AFA ++ E
Sbjct: 390 WTTPPIISGFLATGGDWRASVLQVIIIVITVFIYLPFLRMDEKVAFATAQKTE 442
>gi|16801916|ref|NP_472184.1| similar to PTS system,
cellobiose-specific enzyme IIC [Listeria innocua]
gi|25326312|pir||AB1789 PTS system, cellobiose-specific enzyme IIC
homolog lin2856 [imported] - Listeria innocua (strain
Clip11262)
gi|16415391|emb|CAC98082.1| lin2856 [Listeria innocua]
Length = 454
Score = 72.0 bits (175), Expect = 2e-11
Identities = 60/231 (25%), Positives = 104/231 (44%), Gaps = 4/231 (1%)
Query: 161 ILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFV 220
+ L + I+ ++ N+D+ I + L ++L + L L G+
Sbjct: 213 VALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHG 272
Query: 221 PDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLY 280
P++L ++ N + +Q K+P+ + + +++ GG G L L +A+L
Sbjct: 273 PNVLAPVLESLWGTAQLQNISAAQEGAKLPFEWVRGSF-DAYVWMGGSGGTLVLIIALLM 331
Query: 281 ESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALML 340
S++ ++ K L+L P IF+ N P + GLP++L I IP ++ +
Sbjct: 332 FSKRADARTVAK---LSLAPGIFNINEPIMFGLPIVLNTIYLIPFIIAPMVMVTIAYFAT 388
Query: 341 YLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFV 391
L V P V P LL FLA+ GDW ++ I +VV F I+ PFV
Sbjct: 389 TLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFV 439
>gi|16804745|ref|NP_466230.1| similar to PTS system,
cellobiose-specific enzyme IIC [Listeria monocytogenes
EGD-e]
gi|25326317|pir||AC1413 PTS system, cellobiose-specific enzyme IIC
homolog lmo2708 [imported] - Listeria monocytogenes
(strain EGD-e)
gi|16412208|emb|CAD00921.1| lmo2708 [Listeria monocytogenes]
Length = 454
Score = 71.2 bits (173), Expect = 3e-11
Identities = 60/231 (25%), Positives = 104/231 (44%), Gaps = 4/231 (1%)
Query: 161 ILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFV 220
+ L + I+ ++ N+D+ I + L ++L + L L G+
Sbjct: 213 VALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHG 272
Query: 221 PDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLY 280
P++L ++ N + +Q K+P+ + + +++ GG G L L +A+L
Sbjct: 273 PNVLAPVLESLWGTAQLQNISAAQEGAKLPFEWVRGSF-DAYVWMGGSGGTLVLIIALLM 331
Query: 281 ESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALML 340
S++ ++ K L+L P IF+ N P + GLP++L I IP ++ +
Sbjct: 332 FSKRADARTVAK---LSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFAT 388
Query: 341 YLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFV 391
L V P V P LL FLA+ GDW ++ I +VV F I+ PFV
Sbjct: 389 TLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFV 439
>gi|16764664|ref|NP_460279.1| PTS family, sugar specific enzyme II
for cellobiose, arbutin, and salicin [Salmonella
typhimurium LT2]
gi|16419831|gb|AAL20238.1| PTS family sugar specific enzyme II for
cellobiose, arbutin, and salicin [Salmonella typhimurium
LT2]
Length = 452
Score = 70.5 bits (171), Expect = 5e-11
Identities = 60/197 (30%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
LA+ SG+ P L Y + V L A + H P L +S+ G
Sbjct: 253 LALTALDSGIMTPWALENISIYQQYGSVDAALEAGKTFHIWAKPML-------DSYIFLG 305
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L +A+ SR+ +Y ++ L L IF N P L GLP+I+ P++FIP +
Sbjct: 306 GSGATLGLIIAIFLASRR---ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFI 362
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
L A + YL + P P P+ L F +NG L V L V I
Sbjct: 363 LVQPILAAITLVAYYLGIIPPITNIAPWTMPTGLGAFFNTNGSVAALLVALFNLAVATLI 422
Query: 387 YRPFVKIAFAKEEQYEK 403
Y PFV +A + E+
Sbjct: 423 YLPFVVVANKAQNAIEQ 439
>gi|16760582|ref|NP_456199.1| PTS system, cellobiose-specific IIC
component [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29141657|ref|NP_804999.1| cellobiose-specific IIC component of
PTS system [Salmonella enterica subsp. enterica serovar
Typhi Ty2]
gi|25326305|pir||AH0708 PTS system, cellobiose-specific IIC
component [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16502878|emb|CAD02041.1| PTS system, cellobiose-specific IIC
component [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29137285|gb|AAO68848.1| cellobiose-specific IIC component of PTS
system [Salmonella enterica subsp. enterica serovar
Typhi Ty2]
Length = 452
Score = 70.5 bits (171), Expect = 5e-11
Identities = 60/197 (30%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
LA+ SG+ P L Y + V L A + H P L +S+ G
Sbjct: 253 LALTALDSGIMTPWALENISIYQQYGSVDAALEAGKTFHIWAKPML-------DSYIFLG 305
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L +A+ SR+ +Y ++ L L IF N P L GLP+I+ P++FIP +
Sbjct: 306 GSGATLGLIIAIFLASRR---ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFI 362
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
L A + YL + P P P+ L F +NG L V L V I
Sbjct: 363 LVQPILAAITLVAYYLGIIPPITNIAPWTMPTGLGAFFNTNGSVAALLVALFNLAVATLI 422
Query: 387 YRPFVKIAFAKEEQYEK 403
Y PFV +A + E+
Sbjct: 423 YLPFVVVANKAQNAIEQ 439
>gi|30020525|ref|NP_832156.1| PTS system,
diacetylchitobiose-specific IIC component [Bacillus
cereus ATCC 14579]
gi|29896076|gb|AAP09357.1| PTS system, diacetylchitobiose-specific
IIC component [Bacillus cereus ATCC 14579]
Length = 427
Score = 70.5 bits (171), Expect = 5e-11
Identities = 64/237 (27%), Positives = 113/237 (47%), Gaps = 14/237 (5%)
Query: 160 AILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQ---LIPIMLWSILAIFLTLS 216
A +++I S+++ + +IDL +++ + + G +IP+ L + F +
Sbjct: 183 AFVIIIMSLVTVVF----SIDLHHVVDKLAAPLVKAGDSYFGVMIPVFLITFFWSF-GIH 237
Query: 217 GLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFL 276
G+ V + RP + V A++ D++P++ + + F GG G L L L
Sbjct: 238 GVSVVGTVARP--LWEVYLGKNGEAVASGADQLPFI-SPEPLYQWFIWIGGSGATLGLVL 294
Query: 277 AVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFG 336
A++ R SK L+ + P IF+ N P + GLP++L PIL IP ++T +
Sbjct: 295 AMIVFGRSKYSK---ALSRTCIVPGIFNINEPVIFGLPIVLNPILIIPFIITPLVTATVA 351
Query: 337 ALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKI 393
+ FV P P P+ + +LA+ GDWR + + I + + F IY PF K+
Sbjct: 352 YSATAMGFVTPTHIMPPWTLPAPIGAYLATGGDWRAIVLVFINIAISFLIYLPFFKM 408
>gi|15901843|ref|NP_346447.1| PTS system, IIC component
[Streptococcus pneumoniae TIGR4]
gi|25326288|pir||F95236 PTS system, IIC component [imported] -
Streptococcus pneumoniae (strain TIGR4)
gi|14973531|gb|AAK76087.1| PTS system, IIC component [Streptococcus
pneumoniae TIGR4]
Length = 431
Score = 69.7 bits (169), Expect = 7e-11
Identities = 92/369 (24%), Positives = 161/369 (42%), Gaps = 48/369 (13%)
Query: 59 WLYTVSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLL---TS 115
W T++N +S ++I M YF+A RD N +AS+L ++ +++ S
Sbjct: 66 WGITIANGTLSISGMIIAVMVGYFLAKN--RDFEN----PLAASMLSLVSLIVMMPNTVS 119
Query: 116 VVP------------------GTDYHYPSQPIWLMLALISY-LFIFLTRLLQNRHHIFQ- 155
VVP GT + +++A+I+ LFI L+ + + ++ +
Sbjct: 120 VVPDGAKDAVNISGVLSFNNTGTGAMFAG----VIVAIIATELFIELSNVKALQMNLGEN 175
Query: 156 ---------YSMLAILLLIS--SILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIM 204
+L ++ +IS ++S +L+ ++L +I + + LI ++
Sbjct: 176 IPPAVSRSFSVLLPVMTVISLFGVVSALLFNITGMNLISIITIFIQEPIRHIGTSLIGVI 235
Query: 205 LWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAM 264
+ L L L G+ I +++ N + + IP++ ++ +FA+
Sbjct: 236 IIYSLGNMLWLFGIHQAVIYSAILEPLLLINITENITAANNGQAIPHIINLSQIQ-TFAL 294
Query: 265 FGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIP 324
GG G L L +A SR SKN K L+ P IF+ N P L G P++ L IP
Sbjct: 295 MGGSGSTLCLLIATFLVSRNAVSKNVAK---LSFGPGIFNINEPVLFGYPIVYNISLAIP 351
Query: 325 MVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGF 384
+ + L +F+ PA VP TP L +LA+ GD R + V II +G
Sbjct: 352 FITVPVLGILISYLATVTEFMSPAFIQVPWTTPVFLNAWLATAGDVRAVLVQFIIFALGV 411
Query: 385 FIYRPFVKI 393
+Y PF+K+
Sbjct: 412 LLYIPFIKV 420
>gi|16129691|ref|NP_416251.1| CelB [Escherichia coli K12]
gi|2507269|sp|P17334|PTCC_ECOLI PTS system,
N,N'-diacetylchitobiose-specific IIC component
(EIIC-Chb) (N,N'-diacetylchitobiose-permease IIC
component) (Phosphotransferase enzyme II, C component)
gi|7449990|pir||A64933 celB protein - Escherichia coli (strain
K-12)
gi|1788032|gb|AAC74807.1| PEP-dependent phosphotransferase enzyme
II for cellobiose, arbutin, and salicin [Escherichia
coli K12]
Length = 452
Score = 69.7 bits (169), Expect = 9e-11
Identities = 60/197 (30%), Positives = 83/197 (41%), Gaps = 12/197 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
LA+ +G+ P L Y + V L A + H P L +SF G
Sbjct: 253 LALTALDNGIMTPWALENIATYQQYGSVEAALAAGKTFHIWAKPML-------DSFIFLG 305
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L LA+ SR+ +Y ++ L L IF N P L GLP+I+ P++FIP V
Sbjct: 306 GSGATLGLILAIFIASRR---ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFV 362
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
L A Y+ + P P P+ L F +NG L V L + I
Sbjct: 363 LVQPILAAITLAAYYMGIIPPVTNIAPWTMPTGLGAFFNTNGSVAALLVALFNLGIATLI 422
Query: 387 YRPFVKIAFAKEEQYEK 403
Y PFV +A + +K
Sbjct: 423 YLPFVVVANKAQNAIDK 439
>gi|24112864|ref|NP_707374.1| PEP-dependent phosphotransferase
enzyme II for cellobiose, arbutin, and salicin [Shigella
flexneri 2a str. 301]
gi|24051805|gb|AAN43081.1|AE015172_4 PEP-dependent
phosphotransferase enzyme II for cellobiose, arbutin,
and salicin [Shigella flexneri 2a str. 301]
Length = 449
Score = 69.7 bits (169), Expect = 1e-10
Identities = 60/197 (30%), Positives = 83/197 (41%), Gaps = 12/197 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
LA+ +G+ P L Y + V L A + H P L +SF G
Sbjct: 253 LALTALDNGIMTPWALENIATYQQYGSVEAALAAGKTFHIWAKPML-------DSFIFLG 305
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L LA+ SR+ +Y ++ L L IF N P L GLP+I+ P++FIP V
Sbjct: 306 GSGATLGLILAIFIASRR---ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFV 362
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
L A Y+ + P P P+ L F +NG L V L + I
Sbjct: 363 LVQPILAAITLAAYYMGIIPPVTNIAPWTMPTGLGAFFNTNGSVAALLVALFNLGIATLI 422
Query: 387 YRPFVKIAFAKEEQYEK 403
Y PFV +A + +K
Sbjct: 423 YLPFVVVANKAQNAIDK 439
>gi|1742834|dbj|BAA15518.1| PTS system, cellobiose-specific IIC
component (EIIC-CEL) (Cellobiose- permease IIC
component) (Phosphotransferase enzyme II, C component).
[Escherichia coli]
gi|1742843|dbj|BAA15526.1| PTS system, cellobiose-specific IIC
component (EIIC-CEL) (Cellobiose- permease IIC
component) (Phosphotransferase enzyme II, C component).
[Escherichia coli]
Length = 448
Score = 69.3 bits (168), Expect = 1e-10
Identities = 60/197 (30%), Positives = 83/197 (41%), Gaps = 12/197 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
LA+ +G+ P L Y + V L A + H P L +SF G
Sbjct: 249 LALTALDNGIMTPWALENIATYQQYGSVEAALAAGKTFHIWAKPML-------DSFIFLG 301
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L LA+ SR+ +Y ++ L L IF N P L GLP+I+ P++FIP V
Sbjct: 302 GSGATLGLILAIFIASRR---ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFV 358
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
L A Y+ + P P P+ L F +NG L V L + I
Sbjct: 359 LVQPILAAITLAAYYMGIIPPVTNIAPWTMPTGLGAFFNTNGSVAALLVALFNLGIATLI 418
Query: 387 YRPFVKIAFAKEEQYEK 403
Y PFV +A + +K
Sbjct: 419 YLPFVVVANKAQNAIDK 435
>gi|26247990|ref|NP_754030.1| PTS system, cellobiose-specific IIC
component [Escherichia coli CFT073]
gi|26108393|gb|AAN80595.1|AE016761_170 PTS system,
cellobiose-specific IIC component [Escherichia coli
CFT073]
Length = 452
Score = 69.3 bits (168), Expect = 1e-10
Identities = 60/197 (30%), Positives = 83/197 (41%), Gaps = 12/197 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
LA+ +G+ P L Y + V L A + H P L +SF G
Sbjct: 253 LALTALDNGIMTPWALENIATYQQYGSVEAALAAGKTFHIWAKPML-------DSFIFLG 305
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L LA+ SR+ +Y ++ L L IF N P L GLP+I+ P++FIP V
Sbjct: 306 GSGATLGLILAIFIASRR---ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFV 362
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
L A Y+ + P P P+ L F +NG L V L + I
Sbjct: 363 LVQPILAAITLAAYYMGIIPPVTNIAPWTMPTGLGAFFNTNGSVAALLVALFNLGIATLI 422
Query: 387 YRPFVKIAFAKEEQYEK 403
Y PFV +A + +K
Sbjct: 423 YLPFVVVANKAQNAIDK 439
>gi|15802148|ref|NP_288170.1| PEP-dependent phosphotransferase
enzyme II for cellobiose, arbutin, and salicin
[Escherichia coli O157:H7 EDL933]
gi|25326292|pir||G85782 hypothetical protein celB [imported] -
Escherichia coli (strain O157:H7, substrain EDL933)
gi|12515753|gb|AAG56723.1|AE005396_10 PEP-dependent
phosphotransferase enzyme II for cellobiose, arbutin,
and salicin [Escherichia coli O157:H7 EDL933]
Length = 452
Score = 68.9 bits (167), Expect = 1e-10
Identities = 60/197 (30%), Positives = 83/197 (41%), Gaps = 12/197 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
LA+ +G+ P L Y + V L A + H P L +SF G
Sbjct: 253 LALTALDNGIMTPWALENIATYQQYGSVEAALAAGKTFHIWAKPML-------DSFIFLG 305
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L LA+ SR+ +Y ++ L L IF N P L GLP+I+ P++FIP V
Sbjct: 306 GSGATLGLILAIFIASRR---ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFV 362
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
L A Y+ + P P P+ L F +NG L V L + I
Sbjct: 363 LVQPILAAITLAAYYMGIIPPVTNIAPWTMPTGLGAFFNTNGSVVALLVALFNLGIATLI 422
Query: 387 YRPFVKIAFAKEEQYEK 403
Y PFV +A + +K
Sbjct: 423 YLPFVVVANKAQNAIDK 439
>gi|15831697|ref|NP_310470.1| PEP-dependent phosphotransferase
enzyme II for cellobiose [Escherichia coli O157:H7]
gi|25326276|pir||C90934 hypothetical protein ECs2443 [imported] -
Escherichia coli (strain O157:H7, substrain RIMD
0509952)
gi|13361910|dbj|BAB35866.1| PEP-dependent phosphotransferase enzyme
II for cellobiose [Escherichia coli O157:H7]
Length = 452
Score = 68.9 bits (167), Expect = 1e-10
Identities = 60/197 (30%), Positives = 83/197 (41%), Gaps = 12/197 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
LA+ +G+ P L Y + V L A + H P L +SF G
Sbjct: 253 LALTALDNGIMTPWALENIATYQQYGSVEAALAAGKTFHIWAKPML-------DSFIFLG 305
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L LA+ SR+ +Y ++ L L IF N P L GLP+I+ P++FIP V
Sbjct: 306 GSGATLGLILAIFIASRR---ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFV 362
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
L A Y+ + P P P+ L F +NG L V L + I
Sbjct: 363 LVQPILAAITLAAYYMGIIPPVTNIAPWTMPTGLGAFFNTNGSVVALLVALFNLGIATLI 422
Query: 387 YRPFVKIAFAKEEQYEK 403
Y PFV +A + +K
Sbjct: 423 YLPFVVVANKAQNAIDK 439
>gi|15903876|ref|NP_359426.1| Phosphotransferase system system,
cellobiose-specific IIC component [Streptococcus
pneumoniae R6]
gi|25326300|pir||H98100 hypothetical protein ptcC [imported] -
Streptococcus pneumoniae (strain R6)
gi|15459522|gb|AAL00637.1| Phosphotransferase system system,
cellobiose-specific IIC component [Streptococcus
pneumoniae R6]
Length = 431
Score = 68.9 bits (167), Expect = 1e-10
Identities = 92/369 (24%), Positives = 160/369 (42%), Gaps = 48/369 (13%)
Query: 59 WLYTVSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLL---TS 115
W T++N +S ++I M YF+A RD N +AS+L ++ +++ S
Sbjct: 66 WGITIANGTLSISGMIIAVMVGYFLAKN--RDFEN----PLAASMLSLVSLIVMMPNTVS 119
Query: 116 VVP------------------GTDYHYPSQPIWLMLALISY-LFIFLTRLLQNRHHIFQ- 155
VVP GT + +++A+I+ LFI L+ + + ++ +
Sbjct: 120 VVPDGAKDAVNISGVLSFNNTGTGAMFAG----VIVAIIATELFIELSNVKALQMNLGEN 175
Query: 156 ---------YSMLAILLLIS--SILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIM 204
+L ++ +IS ++S +L+ ++L +I + + LI ++
Sbjct: 176 IPPAVSRSFSVLLPVMTVISLFGVVSALLFNITGMNLISIITIFIQEPIRHIGTSLIGVI 235
Query: 205 LWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAM 264
+ L L L G+ I +++ N + + IP++ ++ +FA+
Sbjct: 236 IIYSLGNMLWLFGIHQAVIYSAILEPLLLINITENITAANNGQAIPHIINLSQIQ-TFAL 294
Query: 265 FGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIP 324
GG G L L +A SR SKN K L+ P IF+ N P L G P++ L IP
Sbjct: 295 MGGSGSTLCLLIATFLVSRNAVSKNVAK---LSFGPGIFNINEPVLFGYPIVYNISLAIP 351
Query: 325 MVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGF 384
+ + L F+ PA VP TP L +LA+ GD R + V II +G
Sbjct: 352 FITVPVLGILISYLATVTGFMSPAFIQVPWTTPVFLNAWLATAGDVRAVLVQFIIFALGV 411
Query: 385 FIYRPFVKI 393
+Y PF+K+
Sbjct: 412 LLYIPFIKV 420
>gi|16802418|ref|NP_463903.1| similar to PTS betaglucoside-specific
enzyme IIC component [Listeria monocytogenes EGD-e]
gi|25326324|pir||AF1121 PTS betaglucoside-specific enzyme IIC
component homolog lmo0373 [imported] - Listeria
monocytogenes (strain EGD-e)
gi|16409751|emb|CAC98452.1| lmo0373 [Listeria monocytogenes]
Length = 444
Score = 68.6 bits (166), Expect = 2e-10
Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 32/244 (13%)
Query: 161 ILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFV 220
+ +I+ LS++ P L I N F G G HQ + +SG +
Sbjct: 225 VTTIITKPLSYVTTSLPGFLLITSIANLF---FGLGIHQAV-------------ISGPLL 268
Query: 221 PDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLY 280
L + + EN+ A + H + IP++ K++FA+ GG G + L +A+
Sbjct: 269 DPFLLQN------MQENM-VAYANHQE-IPHIINM-AFKDTFAVMGGSGNTIGLLIAIFI 319
Query: 281 ESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALML 340
++ K+Y ++ L+ P +F+ + P + GLP++ P+L IP VL IF+
Sbjct: 320 FGKR---KDYKDISKLSAAPSLFNISEPIIFGLPIVFNPLLIIPFVLAPIFSLTTAYYAT 376
Query: 341 YLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFV----KIAFA 396
+++ V P TP ++ GFLA+ GDWR + II+VV FIY PF+ K+AFA
Sbjct: 377 AAGWINHVVVQTPWTTPPIISGFLATGGDWRASVLQVIIIVVTVFIYLPFLRMDEKVAFA 436
Query: 397 KEEQ 400
++
Sbjct: 437 TAQK 440
>gi|29375599|ref|NP_814753.1| PTS system, IIC component
[Enterococcus faecalis V583]
gi|29343060|gb|AAO80823.1| PTS system, IIC component [Enterococcus
faecalis V583]
Length = 425
Score = 68.6 bits (166), Expect = 2e-10
Identities = 66/236 (27%), Positives = 108/236 (44%), Gaps = 8/236 (3%)
Query: 159 LAILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGL 218
+++ LI+SIL + I +Q F P L L + + FL GL
Sbjct: 183 ISLFSLITSILFALGIDNIVISFYEAVQQPFMGLANSYPSAL----LLAFITPFLWFFGL 238
Query: 219 FVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAV 278
+++ +V + + N + IPY+ +SF GG G L L +A+
Sbjct: 239 HGANMVDPLMQTINVPAIDANIKALEAGKAIPYIVN-KPFFDSFVNLGGTGATLGLLIAI 297
Query: 279 LYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGAL 338
R+ +K Y +T L+L P +F+ N P + GLP++L PI+FIP +L + +
Sbjct: 298 FIVGRR--NKPYKVITNLSLAPGLFNINEPVMFGLPIVLNPIMFIPFILVPMVLVTVAYV 355
Query: 339 MLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIA 394
V A + P TP ++ GFLA+ + + A+ L++ IY PFVK+A
Sbjct: 356 ATATGLVPAATFMPPWVTPPIIGGFLATKSIAGGV-LAAVNLLISILIYMPFVKVA 410
>gi|15902275|ref|NP_357825.1| Phosphotransferase system
sugar-specific EIIC component [Streptococcus pneumoniae
R6]
gi|25326298|pir||G97900 hypothetical protein PTS-EIIC [imported] -
Streptococcus pneumoniae (strain R6)
gi|15457778|gb|AAK99035.1| Phosphotransferase system sugar-specific
EIIC component [Streptococcus pneumoniae R6]
Length = 440
Score = 68.6 bits (166), Expect = 2e-10
Identities = 43/135 (31%), Positives = 73/135 (53%), Gaps = 6/135 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+SF + G GI L +A+L+ ++ SK Y L + P IF+ N P + G P+++ P
Sbjct: 298 DSFLILSGSGITFGLVVAMLFAAK---SKQYQALGKVAAFPAIFNVNEPVVFGFPIVMNP 354
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDP-AVYTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
++F+P +L + A + F+ P + T+P TP++L GFL G W+ + +
Sbjct: 355 VMFVPFILVPVLAAVIVYGAIATGFMQPFSGVTLPWSTPAILSGFLV--GGWQGVVTQLL 412
Query: 379 ILVVGFFIYRPFVKI 393
+LV+ +Y PF KI
Sbjct: 413 VLVISTVVYFPFFKI 427
>gi|16799112|ref|NP_469380.1| similar to PTS system,
cellobiose-specific IIC component [Listeria innocua]
gi|25326308|pir||AB1437 PTS system, cellobiose-specific IIC
component homolog lin0033 [imported] - Listeria innocua
(strain Clip11262)
gi|16412454|emb|CAC95266.1| lin0033 [Listeria innocua]
Length = 452
Score = 68.6 bits (166), Expect = 2e-10
Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 4/234 (1%)
Query: 161 ILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFV 220
++L I +I+ ++ + ++ + +I L G L I+L+ LA FL + G+
Sbjct: 199 LVLSILAIIEVLVVSFVSMSIPEIIVKVLQIPLVGGFQTLPGILLYVFLAGFLWVFGIHG 258
Query: 221 PDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLY 280
+L + S N +P + T ++F GG G ++ L +A+
Sbjct: 259 AFVLGAISGPVLLTSLQQNIDAVNAGTALPNIVT-QPFLDAFVYMGGGGTIICLVIAIFI 317
Query: 281 ESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALML 340
S++ ++ +T L P IF+ + P + GLPV+ PI IP+V+ + + A
Sbjct: 318 ASKR---PDHRMVTKFGLIPSIFNVSEPLMFGLPVVFNPIYGIPLVIAPLASTAMAYFAT 374
Query: 341 YLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIA 394
++ +P TP +L G+LA+ GD R + I+VVG IY PFV +A
Sbjct: 375 SWGWISQTYILIPWVTPPVLSGYLATGGDIRASILQIAIIVVGTLIYLPFVLVA 428
>gi|21400333|ref|NP_656318.1| PTS_EIIC, Phosphotransferase system,
EIIC [Bacillus anthracis A2012]
gi|30262462|ref|NP_844839.1| PTS system, cellobiose-specific IIC
component, putative [Bacillus anthracis str. Ames]
gi|30257093|gb|AAP26325.1| PTS system, cellobiose-specific IIC
component, putative [Bacillus anthracis str. Ames]
Length = 428
Score = 68.2 bits (165), Expect = 2e-10
Identities = 64/238 (26%), Positives = 110/238 (45%), Gaps = 18/238 (7%)
Query: 161 ILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQ---LIPIMLWSILAIFLTLSG 217
++++I S+++ + +D+ Y++ + + G +IP+ L + F + G
Sbjct: 185 VIIIIMSLITVVF----KVDVHYVVDKLAAPLVKAGDSYFGVIIPVFLITFFWSF-GIHG 239
Query: 218 LFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLY--TFYTVKNSFAMFGGIGILLSLF 275
+ V + RP + V A++ + P++ FY F GG G L L
Sbjct: 240 VSVVGTVARP--LWDVYLGKNGEAVASGASQFPFIAPEPFY---QWFIWIGGSGATLGLV 294
Query: 276 LAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAF 335
LA++ R SK L+ + P IF+ N P + GLP++L PIL IP V+T +
Sbjct: 295 LAMIVFGRSKYSK---ALSRTCIVPGIFNINEPVIFGLPIVLNPILIIPFVITPLVTATI 351
Query: 336 GALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKI 393
+ FV P P P+ + +LA+ GDWR + + I + + F IY PF K+
Sbjct: 352 AYAATAMGFVTPTHIMPPWTLPAPIGAYLATGGDWRAIVLVLINIAISFLIYLPFFKM 409
>gi|16802082|ref|NP_463567.1| similar to PTS system,
cellobiose-specific IIC component [Listeria
monocytogenes EGD-e]
gi|25326313|pir||AC1079 PTS system, cellobiose-specific IIC
component homolog lmo0034 [imported] - Listeria
monocytogenes (strain EGD-e)
gi|16409393|emb|CAC98249.1| lmo0034 [Listeria monocytogenes]
Length = 450
Score = 67.8 bits (164), Expect = 3e-10
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 4/234 (1%)
Query: 161 ILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFV 220
++L I +I+ ++ + ++ + +I L G L I+L+ LA FL + G+
Sbjct: 199 LVLSILAIIEVLVVSFVSMSIPEIIVKVLQIPLVGGFQTLPGILLYVFLAGFLWVFGIHG 258
Query: 221 PDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLY 280
+L + S N +P + T ++F GG G ++ L +A+
Sbjct: 259 AFVLGAISGPVLLTSLQQNIDAVNAGTALPNIVT-QPFLDAFVYMGGGGTIICLVIAIFI 317
Query: 281 ESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALML 340
S++ ++ +T L P IF+ + P + GLPV+ PI IP+V+ + + A
Sbjct: 318 ASKR---PDHRMVTKFGLIPSIFNVSEPLMFGLPVVFNPIYGIPLVIAPLASTAMAYFAT 374
Query: 341 YLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIA 394
++ +P TP +L G+LA+ GD R + I++VG IY PFV +A
Sbjct: 375 SWGWISQTYILIPWVTPPVLSGYLATGGDIRASILQIAIIIVGTLIYLPFVLVA 428
>gi|21911286|ref|NP_665554.1| putative PTS system sugar-specific
enzyme IIC component [Streptococcus pyogenes MGAS315]
gi|28896660|ref|NP_803010.1| putative PTS system, enzyme IIC
component [Streptococcus pyogenes SSI-1]
gi|21905500|gb|AAM80357.1| putative PTS system sugar-specific
enzyme IIC component [Streptococcus pyogenes MGAS315]
gi|28811914|dbj|BAC64843.1| putative PTS system, enzyme IIC
component [Streptococcus pyogenes SSI-1]
Length = 434
Score = 67.4 bits (163), Expect = 4e-10
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+SF + G GI L +A+++ ++ SK Y L + P +F+ N P + G P+++ P
Sbjct: 290 DSFLILSGSGITFGLVVAMIFAAK---SKQYKALGKVAALPALFNVNEPVVFGFPIVMNP 346
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDP-AVYTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
++F+P +L + A + + F+ P A T+P TP+++ GF+ G W+ V +
Sbjct: 347 VMFLPFILVPVLAALTVYGAIAIGFMQPFAGVTLPWSTPAIISGFMV--GGWQGAIVQIL 404
Query: 379 ILVVGFFIYRPFVKI 393
IL++ +Y PF KI
Sbjct: 405 ILILSTLVYFPFFKI 419
>gi|28377341|ref|NP_784233.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
gi|28270173|emb|CAD63072.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
Length = 451
Score = 67.4 bits (163), Expect = 4e-10
Identities = 97/410 (23%), Positives = 177/410 (42%), Gaps = 39/410 (9%)
Query: 15 IYKSFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWLYTVSNTLYDLSHLL 74
I +F FP + S + ++ LV S F+AQ ++ ++ + N L+ +
Sbjct: 28 IRDAFMYTFPITMAASLVILINNLVFSKTGFIAQI----LFLPKFFPHLENAQKLLTSVT 83
Query: 75 IYFM--ASYFVASLVWRDLSNQTK-ESFSASLLGFATVWLLLT-SVVPGTDYHYPS---- 126
M S F+A LV R+L+ K + + G A +L + S++ + P+
Sbjct: 84 NGTMNILSIFIAYLVARNLAKYFKADDMLVGMTGIACFMILYSPSIIKDGVTYLPTTYLG 143
Query: 127 -QPIWLMLALISYLFIFLTRLLQNRHHIFQYSM-----------------LAILLLISSI 168
Q +++ + + + FL RL R Q M + I++++ S+
Sbjct: 144 AQGLFVAMIVGGLVGEFLPRL--TRIKKMQIKMPEMVPPAVARSFNGLIPIVIMIMLFSM 201
Query: 169 LSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPY 228
L++ L + +I L L +++ +I+ L L G+ P+ L
Sbjct: 202 LNYGLSLISPQGINDIIYKSIQTPLTHIGVNLFGVIIIAIVQNLLWLVGIHGPNTLNALR 261
Query: 229 SYFSVVSENLNAA-LSQHTDK--IPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKL 285
S ++ N ++ H +P T+ + + FA GG G+ L L +A+ SR+
Sbjct: 262 SIIFTEADLKNQTFINAHGTAWGVPNRATWSVLNDVFANMGGSGMTLGLIIAIFLVSRR- 320
Query: 286 QSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFG-ALMLYLKF 344
K+Y ++ L L P +F+ N P + GLP++L PI+ IP VLT + G + + +
Sbjct: 321 --KDYREIAKLALVPGLFNINEPLMFGLPIVLNPIMAIPFVLTPVINILVGYTVTVIFNW 378
Query: 345 VDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIA 394
+ + + TP L FL + G+W L + + L + Y PFV A
Sbjct: 379 IPTPAFGLTWTTPGPLMPFLGTGGNWLGLIIGFVCLGISVLTYMPFVLAA 428
>gi|15675820|ref|NP_269994.1| putative PTS system, enzyme IIC
component [Streptococcus pyogenes]
gi|13623049|gb|AAK34715.1| putative PTS system, enzyme IIC
component [Streptococcus pyogenes M1 GAS]
Length = 434
Score = 67.4 bits (163), Expect = 5e-10
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+SF + G GI L +A+++ ++ SK Y L + P +F+ N P + G P+++ P
Sbjct: 290 DSFLILSGSGITFGLVVAMIFAAK---SKQYKALGKVAAFPALFNVNEPVVFGFPIVMNP 346
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDP-AVYTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
++F+P +L + A + + F+ P A T+P TP+++ GF+ G W+ V +
Sbjct: 347 VMFLPFILVPVLAALTVYGAIAIGFMQPFAGVTLPWSTPAIISGFMV--GGWQGAIVQIL 404
Query: 379 ILVVGFFIYRPFVKI 393
IL++ +Y PF KI
Sbjct: 405 ILIMSTLVYFPFFKI 419
>gi|19746933|ref|NP_608069.1| putative PTS system, enzyme IIC
component [Streptococcus pyogenes MGAS8232]
gi|19749182|gb|AAL98568.1| putative PTS system, enzyme IIC
component [Streptococcus pyogenes MGAS8232]
Length = 434
Score = 67.4 bits (163), Expect = 5e-10
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+SF + G GI L +A+++ ++ SK Y L + P +F+ N P + G P+++ P
Sbjct: 290 DSFLILSGSGITFGLVVAMIFAAK---SKQYKALGKVAAFPALFNVNEPVVFGFPIVMNP 346
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDP-AVYTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
++F+P +L + A + + F+ P A T+P TP+++ GF+ G W+ V +
Sbjct: 347 VMFLPFILVPVLAALTVYGAIAIGFMQPFAGVTLPWSTPAIISGFMV--GGWQGAIVQIL 404
Query: 379 ILVVGFFIYRPFVKI 393
IL++ +Y PF KI
Sbjct: 405 ILIMSTLVYFPFFKI 419
>gi|15900185|ref|NP_344789.1| PTS system, IIC component
[Streptococcus pneumoniae TIGR4]
gi|25326284|pir||D95029 PTS system, IIC component [imported] -
Streptococcus pneumoniae (strain TIGR4)
gi|14971719|gb|AAK74429.1| PTS system, IIC component [Streptococcus
pneumoniae TIGR4]
Length = 440
Score = 67.0 bits (162), Expect = 5e-10
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+SF + G GI L +A+L+ ++ SK Y L + P IF+ N P + G P+++ P
Sbjct: 298 DSFLILSGSGITFGLVVAMLFAAK---SKQYQALGKVAAFPAIFNVNEPVVFGFPIVMNP 354
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDP-AVYTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
++F+P +L + A + F+ P + T+P TP++L GFL G W+ + +
Sbjct: 355 VMFVPFILVPVLAAVIVYGAIATGFMQPFSGVTLPWSTPAILSGFLV--GGWQGVITQLV 412
Query: 379 ILVVGFFIYRPFVKI 393
IL + +Y PF K+
Sbjct: 413 ILAMSTLVYFPFFKV 427
>gi|22536513|ref|NP_687364.1| PTS system, cellobiose-specific IIC
component [Streptococcus agalactiae 2603V/R]
gi|25010392|ref|NP_734787.1| unknown [Streptococcus agalactiae
NEM316]
gi|22533345|gb|AAM99236.1|AE014206_16 PTS system,
cellobiose-specific IIC component [Streptococcus
agalactiae 2603V/R]
gi|23094744|emb|CAD45963.1| unknown [Streptococcus agalactiae
NEM316]
Length = 433
Score = 66.2 bits (160), Expect = 1e-09
Identities = 42/135 (31%), Positives = 73/135 (53%), Gaps = 6/135 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+SF + G GI L +A+L+ ++ SK Y L + P IF+ N P + G P+++ P
Sbjct: 289 DSFLILSGSGITFGLVIAMLFAAK---SKQYKALGKVAAFPAIFNVNEPIVFGFPIVMNP 345
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDP-AVYTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
++F+P +L + A + + F+ P + T+P TP+++ GF+ G W+ V +
Sbjct: 346 VMFLPFILVPVLAALIVYGAIAVGFMQPFSGVTLPWSTPAIISGFMV--GGWQGALVQIV 403
Query: 379 ILVVGFFIYRPFVKI 393
IL + +Y PF KI
Sbjct: 404 ILAISTAVYFPFFKI 418
>gi|21039021|dbj|BAB92991.1| N,N'-diacetylchitobiose utilization,
enzyme IIC of PTS transport system [Serratia marcescens]
Length = 453
Score = 65.9 bits (159), Expect = 1e-09
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+S+ GG G L L +A+ SR+ ++Y ++ L IF N P L GLPVI+ P
Sbjct: 299 DSYIYLGGTGSTLGLIIAIFIASRR---EDYRQVAKLATPSGIFQINEPILFGLPVIMNP 355
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
++FIP +L +L Y + P P P L F +NG + ++
Sbjct: 356 VMFIPFILVQPVLTIITSLAYYSGLIPPITNIAPWTMPVGLGAFFNTNGSIMAMLLSLFN 415
Query: 380 LVVGFFIYRPFVKIAFAKEEQYEKIT 405
L V IY PFV I+ + Q + T
Sbjct: 416 LAVATVIYLPFVAISNKAQSQIDAAT 441
>gi|23003051|ref|ZP_00046721.1| hypothetical protein [Lactobacillus
gasseri]
Length = 437
Score = 65.1 bits (157), Expect = 2e-09
Identities = 58/202 (28%), Positives = 99/202 (48%), Gaps = 9/202 (4%)
Query: 203 IMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSF 262
++L++ LA F G+ P I + VS N Q+ +P++YT + + F
Sbjct: 227 VLLYNFLASFFWFFGINGPSITNSVWQPIFFVSTQDNLKAFQNHAPLPHIYTQPFI-DLF 285
Query: 263 AMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILF 322
+GG G L+L + V + SK +L L + P IF N P + GLPV+L P++
Sbjct: 286 TTYGGGGSTLALLIVVFAICK---SKRLLELGKLAILPGIFGINEPVIFGLPVVLNPVIV 342
Query: 323 IPMVLTTIFAEAFGALMLYLKFVD-PAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILV 381
IP +L + +++ L +V +P TP ++ G+LA+ G W + + ++
Sbjct: 343 IPFILCPVLNTLISGIIMNLGWVAWTNGVQLPWTTPPIISGWLAT-GSWTGSALQIVEII 401
Query: 382 VGFFIYRPFVKI---AFAKEEQ 400
+ IY PFVK+ + KEE+
Sbjct: 402 LNILIYYPFVKMLDKQYLKEEK 423
>gi|16804721|ref|NP_466206.1| similar to cellobiose
phosphotransferase enzyme IIC component [Listeria
monocytogenes EGD-e]
gi|25326315|pir||AC1410 cellobiose phosphotransferase enzyme IIC
component homolog lmo2684 [imported] - Listeria
monocytogenes (strain EGD-e)
gi|16412184|emb|CAD00897.1| lmo2684 [Listeria monocytogenes]
Length = 435
Score = 65.1 bits (157), Expect = 2e-09
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 4/200 (2%)
Query: 204 MLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFA 263
+L + ++ FL GL +I+ ++ + N + ++PY+ +SF
Sbjct: 229 LLLAFVSAFLWFFGLHGANIIDPFMQTINIPAIEANVKALEAGKELPYIVN-KPFFDSFV 287
Query: 264 MFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFI 323
GG G + L +A+ +RK K Y ++ L+ P IF+ N P + GLP++L PI+FI
Sbjct: 288 NLGGTGATIGLIIAIFIVARK--HKAYMTVSKLSAAPGIFNINEPMMFGLPIVLNPIMFI 345
Query: 324 PMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVG 383
P +L + + +V P TP ++ G LA+ + + A+ L +
Sbjct: 346 PYILAPLVLVTVAYFATAIGWVPACTIVTPWTTPPIIGGALATQSIAGGV-LAAVNLGLS 404
Query: 384 FFIYRPFVKIAFAKEEQYEK 403
I+ PF KIA +E + EK
Sbjct: 405 ILIFLPFAKIAQIQELRREK 424
>gi|28379438|ref|NP_786330.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
gi|28272277|emb|CAD65190.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
Length = 490
Score = 65.1 bits (157), Expect = 2e-09
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
N+F G GI + L + L+ ++ +Q K K+ + P +F+ N PFL GLP+++ P
Sbjct: 334 NNFINLTGSGITIGLVIFTLFAAKSVQFKTIGKVEFI---PALFNINEPFLFGLPIVMNP 390
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAV-YTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
L IP LT + L++Y V P + P TP+++ GFL G W+ I
Sbjct: 391 FLAIPFFLTPVIVALSTYLVIYFGIVPPLNGFAAPWTTPAIISGFLI--GGWKMAIWQTI 448
Query: 379 ILVVGFFIYRPFVK 392
LV+ IY PF K
Sbjct: 449 TLVMSTAIYFPFAK 462
>gi|16804820|ref|NP_466305.1| similar to cellobiose
phosphotransferase system enzyme IIC [Listeria
monocytogenes EGD-e]
gi|25326329|pir||AF1422 cellobiose phosphotransferase system enzyme
IIC homolog lmo2783 [imported] - Listeria monocytogenes
(strain EGD-e)
gi|16412283|emb|CAD00996.1| lmo2783 [Listeria monocytogenes]
Length = 431
Score = 64.7 bits (156), Expect = 3e-09
Identities = 96/416 (23%), Positives = 185/416 (44%), Gaps = 59/416 (14%)
Query: 18 SFKDIFPFALIFSWIEILQKLVISDDSFLAQTTKSSIYKNEWLYT-------VSNTLYDL 70
+F I PF ++ ++ ++ ++I D F+ S+I +E L T + N +
Sbjct: 27 AFATILPFIMLAGFMVLINNVIIKPDGFM-----SAIISSETLTTWQGLGNSIVNGTLGI 81
Query: 71 SHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLL---TSVVP-GTDYHYPS 126
+LI +YF+A + + + F+ +L+ A + + + T +VP G +
Sbjct: 82 ITILIGASVAYFLAQ------NRKFENPFAPALMTIALIVIFIPAVTEIVPIGAEKSVEV 135
Query: 127 Q---PIWLMLA-----------LISYLFIFLTRLLQNRHHIFQYSM-------------L 159
PI LM + L + +FI L++ + + HI S+
Sbjct: 136 AGVLPIALMGSAGMFVGIVTALLATEVFIRLSKSEKMKIHISGDSVPPAVIKSFNVLIPT 195
Query: 160 AILLLISSILSHILYRYPNIDLEYLIQNHFSQ---WLGDGPHQLIPIMLWSILAIFLTLS 216
+ +LI + +S ++ +++L LI + +L + +M S + + ++
Sbjct: 196 MLTILIFAFISFLVVTLFSLNLYSLISAIIQEPLTFLVTSVPGFLTLMTISQMLYSIGIA 255
Query: 217 GLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFL 276
G + + P + + EN+ A + HT+ IP++ T ++ F + GG G ++L L
Sbjct: 256 GSGILGPIMDPV-LLANMQENM-TAFANHTE-IPHIIN-TTFRDVFGVMGGGGNTIALLL 311
Query: 277 AVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFG 336
A+ S++ K+Y ++ L+ P +F+ N P + GLP++ L IP +++T
Sbjct: 312 AIFIWSKR---KDYREIATLSAAPGLFNINEPVVFGLPIVYNLSLMIPFIISTPLCLCLA 368
Query: 337 ALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVK 392
L + V VP TP + GFLA+ GDWR ++ V +Y PF+K
Sbjct: 369 YFATKLHMISEVVVMVPWTTPVVASGFLATGGDWRAAVFQIFLIGVCVLLYLPFLK 424
>gi|29375736|ref|NP_814890.1| PTS system, cellobiose-specific IIC
component [Enterococcus faecalis V583]
gi|29343197|gb|AAO80960.1| PTS system, cellobiose-specific IIC
component [Enterococcus faecalis V583]
Length = 451
Score = 64.3 bits (155), Expect = 4e-09
Identities = 60/183 (32%), Positives = 92/183 (49%), Gaps = 10/183 (5%)
Query: 212 FLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGIL 271
F ++G V +F P ++ ENL A H +IP + T ++ FA FGG G
Sbjct: 248 FFGINGGSVVGAVFNPV-LRALSVENLQAFKDGH--EIPNIIT-GQFQDMFATFGGAGST 303
Query: 272 LSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIF 331
LSL + ++ + S+ KL+ L+L P +F N P + GLP++L PIL IP VL
Sbjct: 304 LSLIIVMVLFCK---SQRIKKLSQLSLIPGVFGINEPIIFGLPIVLNPILLIPFVLVPAI 360
Query: 332 AEAFGALMLYLKFVD-PAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPF 390
+ V +P TP ++ GFL S W+ + A++LV+G FIY PF
Sbjct: 361 NIIIAYFAMDWGLVPLTNGIQLPWTTPPIISGFLVSG--WQGSILQALLLVLGMFIYYPF 418
Query: 391 VKI 393
+++
Sbjct: 419 IRV 421
>gi|16122884|ref|NP_406197.1| PTS system, cellobiose-specific IIC
component [Yersinia pestis]
gi|22125152|ref|NP_668575.1| PEP-dependent phosphotransferase
enzyme II for cellobiose, arbutin, and salicin [Yersinia
pestis KIM]
gi|25326303|pir||AG0326 PTS system, cellobiose-specific IIC
component [imported] - Yersinia pestis (strain CO92)
gi|15980658|emb|CAC92918.1| PTS system, cellobiose-specific IIC
component [Yersinia pestis CO92]
gi|21958013|gb|AAM84826.1|AE013728_6 PEP-dependent
phosphotransferase enzyme II for cellobiose, arbutin,
and salicin [Yersinia pestis KIM]
Length = 453
Score = 63.9 bits (154), Expect = 4e-09
Identities = 53/188 (28%), Positives = 83/188 (43%), Gaps = 12/188 (6%)
Query: 209 LAIFLTLSGLFVPDIL--FRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG 266
+A+ SG+ +P L Y+ + V L A H P++ +S+ G
Sbjct: 253 MALSALESGIMMPFALENVATYTQYGSVEAALAAGKEFHMWAKPFV-------DSYIFLG 305
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G L L +A+ SR+ ++Y ++ L IF N P L GLPVI+ P++FIP +
Sbjct: 306 GTGATLGLIIAIFIASRR---EDYRQVAKLAAPASIFQINEPILFGLPVIMNPLMFIPFI 362
Query: 327 LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFI 386
+ ++ Y + P P P+ L F +NG L ++ L V +
Sbjct: 363 MVQPILAIITSVAYYSGLIPPITNIAPWTMPAGLGAFFNTNGSIAALLLSLFNLGVATLV 422
Query: 387 YRPFVKIA 394
Y PFV IA
Sbjct: 423 YLPFVIIA 430
>gi|23099729|ref|NP_693195.1| PTS system cellobiose-specific enzyme
II C component [Oceanobacillus iheyensis HTE831]
gi|22777959|dbj|BAC14230.1| PTS system, cellobiose-specific enzyme
II, C component [Oceanobacillus iheyensis HTE831]
Length = 430
Score = 63.9 bits (154), Expect = 5e-09
Identities = 38/132 (28%), Positives = 65/132 (48%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
++F GG G ++L +A+ R ++ Y ++ L+ +F+ N P + GLP++L P
Sbjct: 284 DTFVFMGGSGTTIALLIAIFIVIRHEKNHPYREVAKLSAPAGLFNINEPVIFGLPIVLNP 343
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
I IP +L + L L V V +P TP +L G+L + G R + + I
Sbjct: 344 IFLIPFILVPVTLTITSYFALSLGLVPKTVAILPWTTPPILSGYLVTGGSVRGIILQLIN 403
Query: 380 LVVGFFIYRPFV 391
L + +Y PF+
Sbjct: 404 LTIAVLLYIPFI 415
>gi|23003182|ref|ZP_00046850.1| hypothetical protein [Lactobacillus
gasseri]
Length = 439
Score = 63.9 bits (154), Expect = 5e-09
Identities = 52/195 (26%), Positives = 92/195 (46%), Gaps = 7/195 (3%)
Query: 201 IPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTD-KIPYLYTFYTVK 259
IP +LA+ L G+ P S + NLN AL+ + +P Y ++
Sbjct: 230 IP---LLLLALLLNWLGIGQPLASLTAGSDSATNVANLNYALTHGSSWNVPNPYVGNSLY 286
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
S+ FGG G+ L L + +L +K + ++ + P +F N +G+P++L P
Sbjct: 287 QSYGRFGGSGLTLVLLIGILIFIKK---SSIVRVARWSFIPTLFGSNQGAFLGIPIMLNP 343
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
+ P V+ + A M+ + V + Y V SGTP L F+A+NG W+ L + ++
Sbjct: 344 LFLFPYVVLPVMNMLLAASMIAIHLVPASAYNVLSGTPGPLVAFIATNGTWQALVFSMLL 403
Query: 380 LVVGFFIYRPFVKIA 394
+ +Y P +K++
Sbjct: 404 FALDILLYLPIIKMS 418
>gi|16801892|ref|NP_472160.1| similar to cellobiose
phosphotransferase enzyme IIC component [Listeria
innocua]
gi|25326310|pir||AB1786 cellobiose phosphotransferase enzyme IIC
component homolog lin2832 [imported] - Listeria innocua
(strain Clip11262)
gi|16415367|emb|CAC98058.1| lin2832 [Listeria innocua]
Length = 435
Score = 63.5 bits (153), Expect = 6e-09
Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 4/200 (2%)
Query: 204 MLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFA 263
+L + ++ FL GL +I+ ++ + N + ++PY+ +SF
Sbjct: 229 LLLAFVSAFLWFFGLHGANIIDPFMQTINIPAIEANVKALEAGKELPYIVN-KPFFDSFV 287
Query: 264 MFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFI 323
GG G + L +A+ +RK K Y ++ L+ P +F+ N P + GLP++L PI+FI
Sbjct: 288 NLGGTGATIGLIIAIFIVARK--HKAYMTVSKLSAAPGLFNINEPMMFGLPIVLNPIMFI 345
Query: 324 PMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVG 383
P +L + + +V P TP ++ G LA+ + + A+ L +
Sbjct: 346 PYILAPLVLVTVAYFATAIGWVPACTIVTPWTTPPIIGGALATQSIAGGV-LAAVNLGLS 404
Query: 384 FFIYRPFVKIAFAKEEQYEK 403
I+ PF KIA +E + E+
Sbjct: 405 ILIFLPFAKIAQIQELRRER 424
>gi|22991301|ref|ZP_00036036.1| hypothetical protein [Enterococcus
faecium]
Length = 450
Score = 63.5 bits (153), Expect = 7e-09
Identities = 37/133 (27%), Positives = 67/133 (49%), Gaps = 3/133 (2%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
NS+ GG G L L + + + ++ Q K K +L+ P +F+ N P + G+P++ P
Sbjct: 298 NSYVTVGGSGATLGLIIFIAFLAKSDQLKVLGKASLV---PGLFNINEPIIFGMPIVYNP 354
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
L +P L + + + L+ V P + +P +P + F+ S GDW+ + I
Sbjct: 355 YLAVPFFLAPMASATLAYFAIRLEIVKPMLAQMPWPSPVGIGAFVGSGGDWKAAVLAVIC 414
Query: 380 LVVGFFIYRPFVK 392
++ F I+ PF+K
Sbjct: 415 AIIAFIIWFPFIK 427
>gi|23100216|ref|NP_693683.1| PTS system cellobiose-specific enzyme
II C component [Oceanobacillus iheyensis HTE831]
gi|22778448|dbj|BAC14717.1| PTS system, cellobiose-specific enzyme
II, C component [Oceanobacillus iheyensis HTE831]
Length = 424
Score = 63.2 bits (152), Expect = 8e-09
Identities = 57/220 (25%), Positives = 106/220 (47%), Gaps = 8/220 (3%)
Query: 159 LAILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGL 218
L++ L + ++S + + +IQ +Q P +I ++L I F L G
Sbjct: 194 LSVFLFVRIVMSFTPFDTVQNFIYTIIQEPLTQLGSGLPATIIAVLLIQIFW-FFGLHGQ 252
Query: 219 FVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAV 278
+ + +F P ++++ +NL+A Q+ ++P + T + + GG G+ L++ + +
Sbjct: 253 IIVNSVFDPI-WYALNEQNLSAF--QNGTELPNIITKQFIDSFLVGMGGSGMTLAVVILI 309
Query: 279 LYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGAL 338
+ R Q K +L L P +F+ N P + GLP+I+ P++ IP ++ + +
Sbjct: 310 ILIGRSRQLK---ELGKLGGPPGVFNVNEPIIFGLPIIMNPLVLIPWLVAPVVITVITYI 366
Query: 339 MLYLKFV-DPAVYTVPSGTPSLLFGFLASNGDWRYLPVTA 377
+ + V PA VP TP LL GFLA+ W VT+
Sbjct: 367 SMSIGLVPKPAGIIVPWTTPPLLSGFLATGNAWARCRVTS 406
>gi|15672398|ref|NP_266572.1| cellobiose-specific PTS system IIC
component [Lactococcus lactis subsp. lactis]
gi|25326277|pir||H86676 hypothetical protein ptcC [imported] -
Lactococcus lactis subsp. lactis (strain IL1403)
gi|12723291|gb|AAK04514.1|AE006278_5 cellobiose-specific PTS system
IIC component (EC 2.7.1.69) [Lactococcus lactis subsp.
lactis]
Length = 389
Score = 63.2 bits (152), Expect = 8e-09
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 267 GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMV 326
G G+ + L + +L ++ +Q K L + + P +F+ N P L GLP++L PIL IP +
Sbjct: 247 GSGLTIGLVIFLLVSAKSVQGKT---LGRMEIGPAVFNINEPILFGLPIVLNPILAIPFI 303
Query: 327 LTTIFAEAFGALMLYLKFVDP--AVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGF 384
L + + L++YL + P Y VP TP++L G+L G W+ + IIL +
Sbjct: 304 LAPLISGILTYLVIYLGIIPPFNGAY-VPWTTPAVLSGYLV--GGWQGMVWQVIILALTS 360
Query: 385 FIYRPFVK 392
+Y PF K
Sbjct: 361 LLYWPFAK 368
>gi|29376094|ref|NP_815248.1| PTS system, IIC component, putative
[Enterococcus faecalis V583]
gi|29343556|gb|AAO81318.1| PTS system, IIC component, putative
[Enterococcus faecalis V583]
Length = 432
Score = 62.8 bits (151), Expect = 1e-08
Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 15/243 (6%)
Query: 159 LAILLLISSILSHILYRYPNIDLEYLIQNHFSQWL--GDGPHQLIPIMLWSILAIFLTLS 216
L ++LLI SI Y D + N + D ++ ++ + F +
Sbjct: 192 LIVMLLIGSIT-----YYLGFDWHTFVGNLVGPLVQAADSLLSVLLLVFLTTFFWFFGIH 246
Query: 217 GLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFL 276
G + L RP + ++ EN A + FY F GG G + L +
Sbjct: 247 GASIVGSLARPL-WLQLLEENTTAKAAGEALPRIAAEPFY---QWFIWIGGAGATIGLAI 302
Query: 277 AVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFG 336
+ + ++ S+ KL L P IF+ N P + G+P++L PIL IP + +
Sbjct: 303 LLAFRAK---SEYGSKLGKAILAPSIFNINEPVIFGVPIVLNPILMIPFIFAPMVLATIA 359
Query: 337 ALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFA 396
L V V+T P P + F+A+ GDWR + ++++V IY PF +A+
Sbjct: 360 WFATKLGLVSEVVFTAPWTLPGPIGAFMATGGDWRAAVLNIVLILVAILIYYPFF-VAYD 418
Query: 397 KEE 399
K E
Sbjct: 419 KNE 421
>gi|28377339|ref|NP_784231.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
gi|28270171|emb|CAD63070.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
Length = 453
Score = 62.0 bits (149), Expect = 2e-08
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 5/192 (2%)
Query: 203 IMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSF 262
++L ++L G+ ++L + ++ N Q +PY++T + +
Sbjct: 257 VLLMTLLVQVFWFFGIHGSNVLAPILDGIWLTAQLANVNAYQAGKALPYVWT-RNCFDLY 315
Query: 263 AMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILF 322
A GG G L L +A+L S++ ++ K L + P F+ N P + G+P++L PI F
Sbjct: 316 AWIGGAGSTLLLLVAILVFSKRDDQRSVAK---LAIGPGFFNINEPVMFGMPIVLDPIYF 372
Query: 323 IPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVV 382
IP VL + + L +V P + P ++ +A+ DWR + + V
Sbjct: 373 IPFVLAPVVTVSIAYAALSAGWVAPITNNIVWSMPPIMNALVATM-DWRSVVLQLFNAAV 431
Query: 383 GFFIYRPFVKIA 394
F IY PFVK A
Sbjct: 432 AFAIYVPFVKAA 443
>gi|21910536|ref|NP_664804.1| putative PTS system IIC component
[Streptococcus pyogenes MGAS315]
gi|28895770|ref|NP_802120.1| putative PTS system, enzyme IIC
component [Streptococcus pyogenes SSI-1]
gi|21904736|gb|AAM79607.1| putative PTS system IIC component
[Streptococcus pyogenes MGAS315]
gi|28811019|dbj|BAC63953.1| putative PTS system, enzyme IIC
component [Streptococcus pyogenes SSI-1]
Length = 459
Score = 61.6 bits (148), Expect = 2e-08
Identities = 88/352 (25%), Positives = 154/352 (43%), Gaps = 62/352 (17%)
Query: 52 SSIYKNEW-----LYTVSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGF 106
SSI ++W Y + L+ + L+I F++S+ A+L R+++ ++ +
Sbjct: 152 SSIETSQWGAIALKYVGATGLF--TALIIGFLSSFVYAALTKRNITITLPDNVPPA---- 205
Query: 107 ATVWLLLTSVVPGTDYHYPSQPIWLMLALISYLFIFLTRLLQNRHHIFQYSMLAILLLIS 166
V +++PGT Y S A+ +YL I L
Sbjct: 206 --VNKAFAAIIPGTVAIYAS-------AIFAYL---------------------IFALTG 235
Query: 167 SILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFR 226
S LS ++ Y + L L SQ +G ++L + L L GL ++L
Sbjct: 236 SSLSDVISTYIQLPLLGL-----SQGIGS-------VILLTFLVQLLWFFGLHGHNVLSP 283
Query: 227 PYS--YFSVVSENLNAALSQHT-DKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESR 283
Y ++EN A + H+ +PYL+T + +++A GG G+ L+L +A+ S+
Sbjct: 284 VMDGIYMVALTENTAAYNTAHSAANLPYLWTRGSF-DAYAQMGGSGVTLALIIAIFIFSK 342
Query: 284 KLQSKNYYKLTLLTLTPL-IFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYL 342
+ + K KL+ P+ IF+ N P G+P++L P IP ++ + +
Sbjct: 343 REEHKTIAKLS----APMGIFNINEPITFGMPIVLNPTFVIPWLIVPPICASIAYFATAI 398
Query: 343 KFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIA 394
+ P +VP TP L+ +LA+ G+ V+ L V F I+ PFV +A
Sbjct: 399 GLIPPVFLSVPWITPVGLYAYLATGGNIMAGLVSLFNLFVAFLIWAPFVILA 450
>gi|19746299|ref|NP_607435.1| putative PTS system IIC component
[Streptococcus pyogenes MGAS8232]
gi|19748489|gb|AAL97934.1| putative PTS system IIC component
[Streptococcus pyogenes MGAS8232]
Length = 459
Score = 61.6 bits (148), Expect = 2e-08
Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 62/352 (17%)
Query: 52 SSIYKNEW-----LYTVSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGF 106
SSI ++W Y + L+ + L+I F++S+ A+L R+++ ++ +
Sbjct: 152 SSIETSQWGAIALKYVGATGLF--TALIIGFLSSFVYAALTKRNITITLPDNVPPA---- 205
Query: 107 ATVWLLLTSVVPGTDYHYPSQPIWLMLALISYLFIFLTRLLQNRHHIFQYSMLAILLLIS 166
V +++PGT Y S A+ +YL I L
Sbjct: 206 --VNKAFAAIIPGTVAIYAS-------AIFAYL---------------------IFALTG 235
Query: 167 SILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFR 226
S LS ++ Y + L L SQ +G ++L + L L GL ++L
Sbjct: 236 SSLSDVISTYIQLPLLGL-----SQGIGS-------VILLTFLVQLLWFFGLHGHNVLAP 283
Query: 227 PYS--YFSVVSENLNAALSQHT-DKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESR 283
Y ++EN A + H+ +PYL+T + +++A GG G+ L+L +A+ S+
Sbjct: 284 VMDGIYMVALTENTAAYNTAHSAANLPYLWTRGSF-DAYAQMGGSGVTLALIIAIFIFSK 342
Query: 284 KLQSKNYYKLTLLTLTPL-IFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYL 342
+ + K KL+ P+ +F+ N P G+P++L P IP ++ + +
Sbjct: 343 REEHKTIAKLS----APMGVFNINEPITFGMPIVLNPTFVIPWLIVPPICASIAYFATAI 398
Query: 343 KFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIA 394
+ P +VP TP L+ +LA+ G+ V+ L V F I+ PFV +A
Sbjct: 399 GLIPPVFLSVPWITPVGLYAYLATGGNIMAGLVSLFNLFVAFLIWAPFVILA 450
>gi|16080909|ref|NP_391737.1| phosphotransferase system (PTS)
lichenan-specific enzyme IIC component [Bacillus
subtilis]
gi|1172710|sp|P46317|PTCC_BACSU PTS system, lichenan-specific IIC
component (EIIC-Lic) (Lichenan-permease IIC component)
(Phosphotransferase enzyme II, C component)
gi|7449991|pir||F69651 PTS lichenan-specific enzyme IIC component
licC - Bacillus subtilis
gi|895749|emb|CAA90286.1| putative cellobiose phosphotransferase
enzyme II'' [Bacillus subtilis]
gi|1783267|dbj|BAA11744.1| cellobiose phosphotransferase enzyme
II'' [Bacillus subtilis]
gi|2636393|emb|CAB15884.1| phosphotransferase system (PTS)
lichenan-specific enzyme IIC component [Bacillus
subtilis subsp. subtilis str. 168]
Length = 452
Score = 61.6 bits (148), Expect = 3e-08
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 239 NAALSQHTDKIPYLYT--FYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLL 296
N Q +++P ++T F+ + + GG G L+L + + +R Q K +L L
Sbjct: 273 NRIAFQAGEELPKIFTQQFFDI---WVNIGGSGATLALVVTMFLRARSKQMK---QLGKL 326
Query: 297 TLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFV-DPAVYTVPSG 355
+ P IF+ N P + G+P+++ P+L +P ++T + + + V PA VP
Sbjct: 327 AVGPAIFNINEPIIFGMPIVMNPMLLLPFIITPLVTVTLTYIGMSTGLVAKPAGIAVPWT 386
Query: 356 TPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKI 393
P + G+LA+ G + AI + V F +Y PF ++
Sbjct: 387 MPPIFSGYLATGGKVSGAVMQAINIAVSFVVYYPFFRM 424
>gi|16801521|ref|NP_471789.1| similar to PTS system,
cellobiose-specific enzyme IIC component [Listeria
innocua]
gi|25516477|pir||AF1739 PTS system, cellobiose-specific enzyme IIC
component homolog lin2459 [imported] - Listeria innocua
(strain Clip11262)
gi|16414981|emb|CAC97686.1| lin2459 [Listeria innocua]
Length = 433
Score = 61.2 bits (147), Expect = 3e-08
Identities = 66/234 (28%), Positives = 110/234 (46%), Gaps = 10/234 (4%)
Query: 163 LLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPD 222
+LI +ILS + I + LIQ FS L + L IML + L G+
Sbjct: 186 VLIVAILSFGVESISGIRVVELIQTLFSP-LTSLVNTLPGIMLIIFIQQLLWWFGIHGYS 244
Query: 223 ILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFG--GIGILLSLFLAVLY 280
++ + + + + NAA + + + F T +++ G G G+ +L + +++
Sbjct: 245 VMAPVWLSVAFQNVDANAAALAKGEPLSSMLIF-TPDFMWSIVGVTGAGVTGALVVIMMF 303
Query: 281 ESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALML 340
+SK Y L L L P F N P + G+P++L P FIPM++ A G +
Sbjct: 304 S----KSKRYKTLGRLALIPTFFSINEPVMFGVPIVLNPRFFIPMMVAPQIAALIGWFSI 359
Query: 341 YLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIA 394
L ++P +T+ S + G + ++ DWRY+ V +IL+ IY PF KIA
Sbjct: 360 KLGLMNP--FTMVSPYVPVPIGAIVASFDWRYIIVLGLILICSALIYYPFFKIA 411
>gi|15902326|ref|NP_357876.1| Phosphotransferase system
sugar-specific EII component [Streptococcus pneumoniae
R6]
gi|25326301|pir||B97907 phosphotransferase system enzyme II (EC
2.7.1.69), PTS-EII [imported] - Streptococcus pneumoniae
(strain R6)
gi|15457834|gb|AAK99086.1| Phosphotransferase system sugar-specific
EII component [Streptococcus pneumoniae R6]
Length = 448
Score = 60.8 bits (146), Expect = 4e-08
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 22/219 (10%)
Query: 185 IQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQ 244
+ N + W+G +M+ +L L + G+ +I+F S ++ + NAA
Sbjct: 247 VSNLTNSWIG--------LMIIYLLTQLLWIVGIHGANIVFAFVSPIALANMAENAAGGH 298
Query: 245 HTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFD 304
+ N F + GG G L L L + + S+ Q K + +++ P +F+
Sbjct: 299 FAVAGEF-------SNMFVIAGGSGATLGLCLYIAFASKSEQLKAIGRASVV---PALFN 348
Query: 305 QNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFL 364
N P + GLP+I P L IP +L + + L F+ P + VP TP + FL
Sbjct: 349 INEPLIFGLPIIYNPALAIPFILAPMVTATIYYVANSLNFIKPIIAQVPWPTPVGIGAFL 408
Query: 365 ASNGDWRYLPVTAIILVVGFFIYRPFVKI---AFAKEEQ 400
+ D R + V + F +Y PF+++ KEEQ
Sbjct: 409 GT-ADLRAVLVALVCAFAAFLVYLPFIRVYDQKLVKEEQ 446
>gi|15900243|ref|NP_344847.1| PTS system, IIC component
[Streptococcus pneumoniae TIGR4]
gi|25326286|pir||F95036 PTS system, IIC component [imported] -
Streptococcus pneumoniae (strain TIGR4)
gi|14971783|gb|AAK74487.1| PTS system, IIC component [Streptococcus
pneumoniae TIGR4]
Length = 448
Score = 60.8 bits (146), Expect = 4e-08
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 22/219 (10%)
Query: 185 IQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQ 244
+ N + W+G +M+ +L L + G+ +I+F S ++ + NAA
Sbjct: 247 VSNLTNSWIG--------LMIIYLLTQLLWIVGIHGANIVFAFVSPIALANMAENAAGGH 298
Query: 245 HTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFD 304
+ N F + GG G L L L + + S+ Q K + +++ P +F+
Sbjct: 299 FAVAGEF-------SNMFVIAGGSGATLGLCLYIAFASKSEQLKAIGRASVV---PALFN 348
Query: 305 QNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFL 364
N P + GLP+I P L IP +L + + L F+ P + VP TP + FL
Sbjct: 349 INEPLIFGLPIIYNPALAIPFILAPMVTATIYYVANSLNFIKPIIAQVPWPTPVGIGAFL 408
Query: 365 ASNGDWRYLPVTAIILVVGFFIYRPFVKI---AFAKEEQ 400
+ D R + V + F +Y PF+++ KEEQ
Sbjct: 409 GT-ADLRAVLVALVCAFAAFLVYLPFIRVYDQKLVKEEQ 446
>gi|15672800|ref|NP_266974.1| cellobiose-specific PTS system IIC
component [Lactococcus lactis subsp. lactis]
gi|25326278|pir||B86727 hypothetical protein yidB [imported] -
Lactococcus lactis subsp. lactis (strain IL1403)
gi|12723741|gb|AAK04916.1|AE006315_5 cellobiose-specific PTS system
IIC component (EC 2.7.1.69) [Lactococcus lactis subsp.
lactis]
Length = 472
Score = 60.1 bits (144), Expect = 7e-08
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 11/195 (5%)
Query: 203 IMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVK--- 259
I++ S+L F G+ I+ S F + + NA+L Q + K+ + V
Sbjct: 264 IIIISLLVPFFWFFGVHGGIIMGAITSAFLIPNTFANASLYQ-SHKLSLANGAHIVTNEF 322
Query: 260 -NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQ 318
N+F G GI L + ++ +R Q K+ K+ L+ P +F+ N PFL GLP++L
Sbjct: 323 YNNFINLSGSGITFGLIIFTIFFARSEQMKSIGKVELV---PGLFNINEPFLFGLPLVLN 379
Query: 319 PILFIPMVLTTIFAEAFGALMLYLKFVDPAV-YTVPSGTPSLLFGFLASNGDWRYLPVTA 377
P+L +P L + A +Y V P P TP ++ GFL G W+Y +
Sbjct: 380 PVLALPFFLVPVVVSATVYGAIYFHIVPPMNGVAAPWTTPPIISGFLI--GGWQYAVLQV 437
Query: 378 IILVVGFFIYRPFVK 392
I L+ IY PF K
Sbjct: 438 IALLESILIYLPFAK 452
>gi|15900389|ref|NP_344993.1| PTS system, cellobiose-specific IIC
component [Streptococcus pneumoniae TIGR4]
gi|25326290|pir||H95054 PTS system, cellobiose-specific IIC
component [imported] - Streptococcus pneumoniae (strain
TIGR4)
gi|14971945|gb|AAK74633.1| PTS system, cellobiose-specific IIC
component [Streptococcus pneumoniae TIGR4]
Length = 440
Score = 59.7 bits (143), Expect = 8e-08
Identities = 50/167 (29%), Positives = 77/167 (45%), Gaps = 19/167 (11%)
Query: 244 QHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIF 303
QH +P+ K+ F GG G + L + + S+ +K KL ++ P IF
Sbjct: 284 QHIITLPF-------KDLFVFIGGGGATIGLAICLFLFSKSRANKTLGKLAII---PSIF 333
Query: 304 DQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKF-VDPAVYT----VPSGTPS 358
+ N L P +L PI+ IP + T AL+ Y+ V YT +P P
Sbjct: 334 NINTAILFTFPTVLNPIMLIPFIATP----TINALITYVSMAVGLVPYTTGVILPWTMPP 389
Query: 359 LLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKIT 405
++ GFLA+ WR + ++++V IY PF KIA + + EK T
Sbjct: 390 IIGGFLATGASWRGALLQVVLILVSVAIYYPFFKIADKRNLEKEKAT 436
>gi|15902465|ref|NP_358015.1| Phosphotransferase system
sugar-specific EII component [Streptococcus pneumoniae
R6]
gi|25326296|pir||E97924 hypothetical protein PTS-EII [imported] -
Streptococcus pneumoniae (strain R6)
gi|15457986|gb|AAK99225.1| Phosphotransferase system sugar-specific
EII component [Streptococcus pneumoniae R6]
Length = 441
Score = 59.7 bits (143), Expect = 8e-08
Identities = 50/167 (29%), Positives = 77/167 (45%), Gaps = 19/167 (11%)
Query: 244 QHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIF 303
QH +P+ K+ F GG G + L + + S+ +K KL ++ P IF
Sbjct: 285 QHIITLPF-------KDLFVFIGGGGATIGLAICLFLFSKSRANKTLGKLAII---PSIF 334
Query: 304 DQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKF-VDPAVYT----VPSGTPS 358
+ N L P +L PI+ IP + T AL+ Y+ V YT +P P
Sbjct: 335 NINTAILFTFPTVLNPIMLIPFIATP----TINALITYVSMAVGLVPYTTGVILPWTMPP 390
Query: 359 LLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQYEKIT 405
++ GFLA+ WR + ++++V IY PF KIA + + EK T
Sbjct: 391 IIGGFLATGASWRGALLQVVLILVSVAIYYPFFKIADKRNLEKEKAT 437
>gi|23037179|ref|ZP_00069391.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 142
Score = 59.7 bits (143), Expect = 9e-08
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 264 MFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFI 323
M GG G + L +A+ S++ SKN + L+ P +F+ + P + G P++ + I
Sbjct: 1 MIGGTGSTICLLIAIFIFSKQRASKN---VASLSGAPGLFNIDEPVIFGYPIVFNIPMMI 57
Query: 324 PMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVG 383
P VL + + ++ V +P TP LL +LA+ GDWR + V +I+++G
Sbjct: 58 PFVLQPVIGILIAYFFTSIGWMSRVVVFIPWATPPLLSAYLATAGDWRAVIVQLLIIIIG 117
Query: 384 FFIYRPFVKIA 394
Y PF+KI+
Sbjct: 118 VLFYLPFMKIS 128
>gi|23003439|ref|ZP_00047102.1| hypothetical protein [Lactobacillus
gasseri]
Length = 476
Score = 59.3 bits (142), Expect = 1e-07
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
N+F G GI + L + +L ++ Q ++ K+ L+ P IF+ N PFL GLP+++ P
Sbjct: 326 NNFINLTGSGITIGLIIFILIAAKSAQLRSIGKVELV---PGIFNINEPFLFGLPIVMNP 382
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAV-YTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
L IP LT + ++ V P + P P+++ GFL G W+ A
Sbjct: 383 FLAIPFFLTPVVVAISTYFVIKTGIVPPLNGFACPWTMPAVISGFLI--GGWKMAIWQAC 440
Query: 379 ILVVGFFIYRPFVK 392
LV+ IY PF K
Sbjct: 441 TLVISTLIYWPFAK 454
>gi|23023365|ref|ZP_00062602.1| hypothetical protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 449
Score = 58.2 bits (139), Expect = 3e-07
Identities = 57/204 (27%), Positives = 90/204 (43%), Gaps = 19/204 (9%)
Query: 190 SQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKI 249
S WLG IM+ L L + G+ +I+ S F N + + I
Sbjct: 248 STWLG--------IMVIEFLIHALWIVGIHGANII----SAFITPIFLANMVANSNGANI 295
Query: 250 PYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPF 309
P+ F N+FA+ GG G L L + + +R Q K L ++ P +F+ N P
Sbjct: 296 PFAGEF---NNAFAILGGSGATLGLCIFITLLARSEQLK---VLGRASIVPSLFNINEPL 349
Query: 310 LVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGD 369
+ GLP++ P L IP L + + + + P V P +P+ + F+ S D
Sbjct: 350 IFGLPIVYNPYLAIPFFLAPMATASVAYAAINFHIIRPIVIQAPWPSPAGIGAFI-STVD 408
Query: 370 WRYLPVTAIILVVGFFIYRPFVKI 393
W+ + I +V+ F IY PF+KI
Sbjct: 409 WKAAVLAIICVVIAFIIYLPFIKI 432
>gi|95695|pir||S10871 phosphotransferase system enzyme II (EC
2.7.1.69) factor II, phosphoenolpyruvate-dependent -
Escherichia coli
gi|41098|emb|CAA37070.1| unnamed protein product [Escherichia coli]
Length = 417
Score = 58.2 bits (139), Expect = 3e-07
Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Query: 228 YSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQS 287
Y + V L A + H P L +SF GG G L L LA+ SR+
Sbjct: 271 YQQYGSVEAALAAGKTFHIWAKPML-------DSFIFLGGSGATLGLILAIFIASRR--- 320
Query: 288 KNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDP 347
+Y ++ L L IF N P L GLP+I+ P++FIP+ A Y+ + P
Sbjct: 321 ADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPLYWYNRILAAITLAAYYMGIIPP 380
Query: 348 AVYTVPSGTPSLLFGFLASNG 368
P P+ L F +NG
Sbjct: 381 VTNIAPWTMPTGLGAFFNTNG 401
>gi|24379977|ref|NP_721932.1| putative PTS system,
cellobiose-specific IIC component [Streptococcus mutans
UA159]
gi|24377963|gb|AAN59238.1|AE014991_4 putative PTS system,
cellobiose-specific IIC component [Streptococcus mutans
UA159]
Length = 452
Score = 58.2 bits (139), Expect = 3e-07
Identities = 39/133 (29%), Positives = 64/133 (47%), Gaps = 4/133 (3%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
N F + GG G L L + + S+ Q K +++ P IF+ N P + G+P+I P
Sbjct: 307 NMFVIAGGSGATLGLCIWLATRSKSEQLNAIGKASVV---PAIFNINEPLIFGIPIIYNP 363
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
L IP +L + + L + L + VP TP + F+ + GDW+ + + I
Sbjct: 364 ALAIPFILAPMTSATLYYLAMKLDLIKAVFANVPWPTPVGIGAFIGT-GDWKSVILALIC 422
Query: 380 LVVGFFIYRPFVK 392
V F +Y PF++
Sbjct: 423 AVAAFLVYYPFIR 435
>gi|21397676|ref|NP_653661.1| PTS_EIIC, Phosphotransferase system,
EIIC [Bacillus anthracis A2012]
gi|30265239|ref|NP_847616.1| PTS system, cellobiose-specific IIC
component [Bacillus anthracis str. Ames]
gi|30259916|gb|AAP29102.1| PTS system, cellobiose-specific IIC
component [Bacillus anthracis str. Ames]
Length = 433
Score = 57.8 bits (138), Expect = 3e-07
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 266 GGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPM 325
GG G L+L + +L +R Q K+ L L++ P IF+ N G+P+++ PIL IP
Sbjct: 296 GGSGATLALVVGMLLFARSQQLKS---LGRLSIAPGIFNINEMVTFGMPIVMNPILLIPF 352
Query: 326 VLTTIFAEAFGALMLYLKFV-DPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGF 384
+L + + V P+ VP TP L G+L S G + + + + F
Sbjct: 353 ILVPVVLTIVSYFAMEWGLVARPSGAAVPWTTPILFSGYLGSGGKISGVVLQLVNFALAF 412
Query: 385 FIYRPFVKI 393
FIY PF+KI
Sbjct: 413 FIYLPFLKI 421
>gi|28379823|ref|NP_786715.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
gi|28272664|emb|CAD65593.1| cellobiose PTS, EIIC [Lactobacillus
plantarum WCFS1]
Length = 445
Score = 57.8 bits (138), Expect = 4e-07
Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 12/238 (5%)
Query: 160 AILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQL----IPIMLWSILAIFLTL 215
A L++ + + H+ N D+ +Q FS G L +PI+L I+ +F +
Sbjct: 189 ATFLIVGAWVIHVGL---NFDVNAFLQWVFSPLAYFGRDNLLSVIVPILLTDIVWLF-GI 244
Query: 216 SGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLF 275
G + +F P ++ +++NL A T + F GG G LSL
Sbjct: 245 HGAALATPIFWPL-WYPNLNDNLAAISKGATAATVPHFMTEQFFQWFVYIGGAGATLSLC 303
Query: 276 LAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAF 335
+ + + S+ K ++T++ P IF+ N P + G+P+++ P IP VL +
Sbjct: 304 ILLAFFSKSAYGKTIGRVTII---PGIFNINEPVIFGVPIVMNPYFAIPFVLAPLTMGII 360
Query: 336 GALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKI 393
L V V VP P + + + DWR + I ++V FIY PF KI
Sbjct: 361 TWAATVLHLVSRTVALVPWTLPGPIGALMTTAWDWRAAVLCIINIIVATFIYYPFFKI 418
>gi|23037269|ref|ZP_00069479.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 450
Score = 57.4 bits (137), Expect = 4e-07
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
N+F + GG G L L + +L+ SR Q + K+ ++ P IF+ N P L GLP++
Sbjct: 305 NAFVIIGGSGATLGLAIWLLFRSRSTQLREIGKVEIV---PAIFNINEPMLFGLPIVYNI 361
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
L IP + + + + + K V + P TP L GF+A+ W+ ++ +
Sbjct: 362 NLIIPFICAPLASGIVSYVAITSKLVPKVILQQPWPTPVGLSGFIAT-ASWKGAVLSIVD 420
Query: 380 LVVGFFIYRPFVK 392
+V F ++ PF+K
Sbjct: 421 AIVAFLVWYPFIK 433
>gi|29374931|ref|NP_814084.1| PTS system, IIC component
[Enterococcus faecalis V583]
gi|29342389|gb|AAO80155.1| PTS system, IIC component [Enterococcus
faecalis V583]
Length = 444
Score = 57.4 bits (137), Expect = 5e-07
Identities = 37/134 (27%), Positives = 67/134 (49%), Gaps = 6/134 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+ F G G+ + L + +++ ++ Q K +L L++ P +F+ N P + P+++ P
Sbjct: 288 DQFLTVTGAGMTIGLVVFMVFFAKSAQFK---QLGRLSIGPAVFNINEPIVFATPIVMNP 344
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDP-AVYTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
I+ +P ++T I + LY V VP TP ++ G L G W+ + +
Sbjct: 345 IMAVPFIITPIVSSVVTYFALYTGLVPLFTAVQVPWTTPPIISGLLV--GGWQAALLQVV 402
Query: 379 ILVVGFFIYRPFVK 392
+L + FFIY PF K
Sbjct: 403 VLTMSFFIYLPFAK 416
>gi|28901284|ref|NP_800939.1| hypothetical protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|28809797|dbj|BAC62772.1| hypothetical protein [Vibrio
parahaemolyticus]
Length = 681
Score = 57.0 bits (136), Expect = 5e-07
Identities = 83/347 (23%), Positives = 147/347 (41%), Gaps = 39/347 (11%)
Query: 63 VSNTLYDLSHLLIYFMASYFVASLVWRDLSNQTKESFSASLLGFATVWLLLTSVVP---G 119
VS L+ LS +LI + F + LS++ S S L+ ++ + L S+
Sbjct: 65 VSLLLFHLSDILINLYPTAFCVVAAYY-LSHKANVS-SVVLIIYSLIMFYLVSIENESLS 122
Query: 120 TDYHYPSQPIW-LMLALISYLFI--------------FLTRLLQNRHHIFQYSMLAILLL 164
Y P+ + L+ A++SYL+ F +RL ++ H F + ++A+ L
Sbjct: 123 ATYTLPNNSLLALISAMMSYLYCKHLRIQLLEPQALDFTSRLFKDVLHFFVFVLVAVSL- 181
Query: 165 ISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDIL 224
S + + I+ + + +G P L +++ + L +G+ ++L
Sbjct: 182 -SHVTAAIMVWFSGA----------VRSIGVDPLTLEGGLIYQTVLGLLGATGINAHNML 230
Query: 225 FRPYSYFSVVSENLNAALSQHTDKIPYLYT-FYTVKNSFAMFGGIGILLSLFLAVLYESR 283
F +E AA + + FY ++F GG G + L L +L +R
Sbjct: 231 FAIKQQIYAATEANMAAWQAGEASLNVISQGFY---DAFLSMGGSGNSVCLLLCILIFAR 287
Query: 284 KLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLK 343
+ +N+ L L ++F+ N L GLP+I PIL IP VL + + +
Sbjct: 288 E---RNHIMLALAAAPLVMFNINEVLLFGLPIIFNPILIIPFVLVPLVSFVITYASIASG 344
Query: 344 FVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPF 390
+DP V TP L+ G++A + + I++ G IYRPF
Sbjct: 345 MIDPVEKIVNWMTPPLISGYVAMGNHIQGTILQLIVVAAGVLIYRPF 391
>gi|30023248|ref|NP_834879.1| PTS system, lichenan
oligosaccharide-specific IIC component [Bacillus cereus
ATCC 14579]
gi|29898808|gb|AAP12080.1| PTS system, lichenan
oligosaccharide-specific IIC component [Bacillus cereus
ATCC 14579]
Length = 336
Score = 57.0 bits (136), Expect = 6e-07
Identities = 41/129 (31%), Positives = 65/129 (49%), Gaps = 4/129 (3%)
Query: 266 GGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPM 325
GG G L+L + +L +R Q K+ L L++ P IF+ N G+P+++ P+L IP
Sbjct: 199 GGSGATLALVVGMLLFARSQQLKS---LGRLSIAPGIFNINEMVTFGMPIVMNPLLLIPF 255
Query: 326 VLTTIFAEAFGALMLYLKFV-DPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGF 384
+L + + +V P+ VP TP L G+L S G + + + + F
Sbjct: 256 ILVPVVLTIVSYFAMEWGWVARPSGAAVPWTTPILFSGYLGSGGKISGVILQLVNFALAF 315
Query: 385 FIYRPFVKI 393
FIY PF+KI
Sbjct: 316 FIYLPFLKI 324
>gi|23003143|ref|ZP_00046811.1| hypothetical protein [Lactobacillus
gasseri]
Length = 485
Score = 56.6 bits (135), Expect = 7e-07
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 262 FAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPIL 321
F GG G +L L + + + S+ K K ++ P IF+ N P + GLP++L P
Sbjct: 286 FVYIGGSGTILGLCILLAFMSKSSFGKTLGKAVII---PSIFNINEPIIFGLPIVLNPYF 342
Query: 322 FIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILV 381
IP V+T + A + L V + VP P + ++A+ DWR ++ I ++
Sbjct: 343 AIPFVVTPMVTGALTYFAMALHLVSRTIALVPWTLPGPIGAYMATGFDWRAAVLSIINVI 402
Query: 382 VGFFIYRPFVKIAFAKEEQYE 402
+ IY PF K+ K+ + E
Sbjct: 403 ISIVIYYPFFKVWDKKQLEKE 423
>gi|29377728|ref|NP_816882.1| PTS system, IIC component
[Enterococcus faecalis V583]
gi|29345196|gb|AAO82952.1| PTS system, IIC component [Enterococcus
faecalis V583]
Length = 435
Score = 55.5 bits (132), Expect = 2e-06
Identities = 45/148 (30%), Positives = 74/148 (49%), Gaps = 15/148 (10%)
Query: 260 NSFAMFGGIG--ILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVIL 317
+ FA GG G I L++ +A++ S ++++ ++ ++ P F+ N P + GLPVI
Sbjct: 289 DQFATIGGAGCTIGLAIAMAIVGHSSRMKA-----MSKISFVPAFFNINEPLIFGLPVIF 343
Query: 318 QPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTV--PSGTPSLLFGFLASNGDWRYLPV 375
P+L IP+ + I + L + + F+ P + P TP L GFL G W+
Sbjct: 344 NPLLLIPIAVAPIVSVLIAFLSMKIGFM-PMFTNIQAPWATPFLFSGFLV--GKWQGAVT 400
Query: 376 TAIILVVGFFIYRPFVKIAFAKEEQYEK 403
+ + IY PFVK A + QY+K
Sbjct: 401 QVLAVAASVVIYYPFVK---ALDRQYQK 425
>gi|15641224|ref|NP_230856.1| conserved hypothetical protein [Vibrio
cholerae]
gi|11354582|pir||D82227 conserved hypothetical protein VC1211
[imported] - Vibrio cholerae (strain N16961 serogroup
O1)
gi|9655691|gb|AAF94370.1| conserved hypothetical protein [Vibrio
cholerae]
Length = 704
Score = 55.5 bits (132), Expect = 2e-06
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 261 SFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPI 320
+F GG G SL LA+L ++ KN L + +L + + N FL GLP+IL P
Sbjct: 273 TFVFIGGSGATFSLALAILLFGKQ---KNIRLLAIASLPIGLINVNEIFLFGLPLILNPR 329
Query: 321 LFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIIL 380
LF P +L + + +V +VP +P L ++A++GDW L + + +
Sbjct: 330 LFFPFLLAPMVNVVVSLWAVESGWVAYPSVSVPFNSPIFLNAWIATSGDWNGLLLQLVNI 389
Query: 381 VVGFFIYRPFV 391
V+G +Y P V
Sbjct: 390 VLGCLLYLPSV 400
>gi|16080890|ref|NP_391718.1| alternate gene name: ipa-16d~similar
to phosphotransferase system enzyme II [Bacillus
subtilis]
gi|732331|sp|P39584|YWBA_BACSU Putative PTS system IIBC component
ywbA
gi|629023|pir||S39671 phosphotransferase system enzyme II homolog
ywbA - Bacillus subtilis
gi|413940|emb|CAA51572.1| ipa-16d [Bacillus subtilis]
gi|2636374|emb|CAB15865.1| ywbA [Bacillus subtilis subsp. subtilis
str. 168]
Length = 444
Score = 54.7 bits (130), Expect = 3e-06
Identities = 55/200 (27%), Positives = 94/200 (46%), Gaps = 21/200 (10%)
Query: 199 QLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYT--FY 256
+ + ++LWS + G + + P Y ++ + N Q + +P ++T F+
Sbjct: 241 EFVQMLLWSC-----GIHGASIIGGIMAPIWYGAM---DANRLAFQAGEALPSIFTTQFF 292
Query: 257 TVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVI 316
+ + GG G L+L L +L SR Q K +L L + P +F+ N P + G+P++
Sbjct: 293 QI---WINVGGSGATLALVLTMLVRSRSKQMK---QLGRLGIGPALFNINEPIIFGMPIV 346
Query: 317 LQPILFIPMV---LTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYL 373
+ P+L +P + L TI A G M PA VP P L+ G+LA+ G
Sbjct: 347 MNPLLIVPFIIAPLLTITATYIG--MSTGLVARPAGIAVPWTMPPLISGYLATGGKVSGA 404
Query: 374 PVTAIILVVGFFIYRPFVKI 393
+ + L++ IY PF +I
Sbjct: 405 VMQLVNLLITCAIYYPFFRI 424
>gi|15900393|ref|NP_344997.1| PTS system, lactose-specific IIBC
components [Streptococcus pneumoniae TIGR4]
gi|25388395|pir||D95055 PTS system, lactose-specific IIBC
components [imported] - Streptococcus pneumoniae (strain
TIGR4)
gi|14971949|gb|AAK74637.1| PTS system, lactose-specific IIBC
components [Streptococcus pneumoniae TIGR4]
Length = 559
Score = 54.3 bits (129), Expect = 3e-06
Identities = 65/243 (26%), Positives = 102/243 (41%), Gaps = 14/243 (5%)
Query: 153 IFQYSMLAILLLISSILSHILYRYPNIDLEYLIQNHFSQWLG---DGPHQLIPIMLWSIL 209
IF +S +LLIS +L I+ R+ L+ F Q L G +ML +
Sbjct: 185 IFPFSF---VLLISGLLD-IVSRF---SLDVPFAQVFQQLLTPIFKGAESYPAMMLIWFM 237
Query: 210 AIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIG 269
L G+ P I+ + + + NA L + + PY N A GG G
Sbjct: 238 CALLWFVGIHGPSIVLPAVTALQLSNMEENAQLLAN-GQFPYHSLTPNFGNYIAAIGGTG 296
Query: 270 ILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTT 329
+ +++ R Q K+ K T+TP++F N P L G+PVIL P LF+P ++T
Sbjct: 297 ATFVVPFILIFFMRSKQLKSVGK---ATITPVLFAVNEPLLFGMPVILNPYLFVPFLMTP 353
Query: 330 IFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRP 389
G + + ++ +P P L + +N ++ILVV IY P
Sbjct: 354 PVNVFLGKVFIDFFGMNGFYIQLPWTFPGPLGLLIGTNFQLISFVFLSLILVVDILIYLP 413
Query: 390 FVK 392
F +
Sbjct: 414 FCR 416
>gi|27366325|ref|NP_761853.1| FOG: EAL domain [Vibrio vulnificus
CMCP6]
gi|27362526|gb|AAO11380.1|AE016807_99 FOG: EAL domain [Vibrio
vulnificus CMCP6]
Length = 698
Score = 53.9 bits (128), Expect = 5e-06
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 257 TVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPL-IFDQNLPFLVGLPV 315
++ +F GG G LSL +A+L ++ + KL + P+ + + N L GLP+
Sbjct: 264 SMMGTFVFIGGSGATLSLVIAMLLFAK----QKSLKLIAIASIPIGLINVNEILLFGLPI 319
Query: 316 ILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPV 375
IL P +F+P LT L + + ++ +VP P ++ +LA++GDW + +
Sbjct: 320 ILNPRMFLPFFLTPAVHVVTTLLAIEVGVINVPSASVPFNAPIIINAWLATSGDWGGVLL 379
Query: 376 TAIILVVGFFIYRPFVK 392
+ VG IY P V+
Sbjct: 380 QLFNIAVGVVIYYPSVR 396
>gi|15902469|ref|NP_358019.1| Phosphotransferase system
sugar-specific EII component [Streptococcus pneumoniae
R6]
gi|25511492|pir||A97925 probable phosphotransferase system enzyme
II (EC 2.7.1.69), PTS-EII [imported] - Streptococcus
pneumoniae (strain R6)
gi|15457990|gb|AAK99229.1| Phosphotransferase system sugar-specific
EII component [Streptococcus pneumoniae R6]
Length = 559
Score = 53.5 bits (127), Expect = 6e-06
Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 14/243 (5%)
Query: 153 IFQYSMLAILLLISSILSHILYRYPNIDLEYLIQNHFSQWLG---DGPHQLIPIMLWSIL 209
IF +S +LLIS +L I+ R+ L+ F Q L G +ML +
Sbjct: 185 IFPFSF---VLLISGLLD-IVSRF---SLDVPFAQVFQQLLTPIFKGAESYPAMMLIWFM 237
Query: 210 AIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIG 269
L G+ P I+ + + + NA L + + PY N A GG G
Sbjct: 238 CALLWFVGIHGPSIVLPAVTALQLSNMEENAQLLAN-GQFPYHSLTPNFGNYIAAIGGTG 296
Query: 270 ILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTT 329
+ +++ R Q K+ K T+TP++F N P L G+PVIL P LF+P ++T
Sbjct: 297 ATFVVPFILIFFMRSKQLKSVGK---ATITPVLFAVNEPLLFGMPVILNPYLFVPFLMTP 353
Query: 330 IFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRP 389
G + + ++ +P P L + +N + +++LVV IY P
Sbjct: 354 PVNVFLGKVFIDFFGMNGFYIQLPWAFPGPLGLLIGTNFQPISFVLLSLMLVVDILIYLP 413
Query: 390 FVK 392
F +
Sbjct: 414 FCR 416
>gi|2499991|sp|Q45400|PTCC_BACST PTS system, cellobiose-specific IIC
component (EIIC-Cel) (Cellobiose-permease IIC component)
(Phosphotransferase enzyme II, C component)
gi|541383|pir||C49898 cellobiose phosphotransferase system celB -
Bacillus stearothermophilus
gi|466474|gb|AAA17390.1| cellobiose phosphotransferase enzyme II''
Length = 451
Score = 53.5 bits (127), Expect = 6e-06
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 230 YFSVVSENLNAALSQHTDKIPYLYT--FYTVKNSFAMFGGIGILLSLFLAVLYESRKLQS 287
+ S++ EN ++P + T F+ + + GG G L+L L +++ +R Q
Sbjct: 266 WLSLMDENRMVFQQNPNAELPNVITQQFFDL---WIYIGGSGATLALALTMMFRARSRQL 322
Query: 288 KNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFG-ALMLYLKFVD 346
K+ L L + P IF+ N P G+P+++ P+L IP +L + A M
Sbjct: 323 KS---LGRLAIAPGIFNINEPITFGMPIVMNPLLIIPFILVPVVLVVVSYAAMATGLVAK 379
Query: 347 PAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKI 393
P+ VP TP ++ G+LA+ G + + + F IY PF I
Sbjct: 380 PSGVAVPWTTPIVISGYLATGGKISGSILQIVNFFIAFAIYYPFFSI 426
>gi|15896217|ref|NP_349566.1| PTS system lactose-specific enzyme
IIBC [Clostridium acetobutylicum]
gi|25500788|pir||G97264 PTS system lactose-specific enzyme IIBC
[imported] - Clostridium acetobutylicum
gi|15026018|gb|AAK80906.1|AE007793_6 PTS system lactose-specific
enzyme IIBC [Clostridium acetobutylicum]
Length = 560
Score = 53.5 bits (127), Expect = 7e-06
Identities = 47/192 (24%), Positives = 89/192 (45%), Gaps = 9/192 (4%)
Query: 204 MLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFA 263
+++ +A+F G+ P I+ + + + N L Q Y+ T T A
Sbjct: 227 VIYGAMAMFW-FVGIHGPSIVEPAVTAIYIANVEANLKLHQAGHHATYVLTHGT-SYFIA 284
Query: 264 MFGGIG--ILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPIL 321
GG G ++L++ A + +S++L++ + ++ P+ F N P L G P++L PI
Sbjct: 285 TIGGTGATLMLTVMFAFIAKSKQLKA-----VGRTSIIPVCFAVNEPILFGAPIVLNPIF 339
Query: 322 FIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILV 381
F+P +LT I + ++ +Y +P TP+ + L + + ++LV
Sbjct: 340 FVPFILTPILNVWIFKFFIDNLGMNGFIYIIPWTTPAPIGLILGTGFAKLAFILAPLLLV 399
Query: 382 VGFFIYRPFVKI 393
V F +Y PF K+
Sbjct: 400 VDFVMYYPFFKV 411
>gi|11497019|ref|NP_046990.1| PTS system, cellobiose-specific IIC
component (celB) [Borrelia burgdorferi]
gi|7449993|pir||H70216 PTS system, cellobiose-specific IIC
component (celB) homolog - Lyme disease spirochete
plasmid B/cp26
gi|2689900|gb|AAC66324.1| PTS system, cellobiose-specific IIC
component (celB) [Borrelia burgdorferi B31]
Length = 443
Score = 53.5 bits (127), Expect = 7e-06
Identities = 41/161 (25%), Positives = 79/161 (48%), Gaps = 5/161 (3%)
Query: 233 VVSENLNAALSQHTDKIPYLYTFY-TVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYY 291
++ NL++ + +D +P + +SF GG G L L +A++ +S++
Sbjct: 275 IILSNLDSNIRALSDNLPLPHILAGGFLDSFVYIGGAGATLGLAIAMMLS----KSQHLK 330
Query: 292 KLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYT 351
+ L+ P +F+ N P + G P++L PIL IP +L IF + ++
Sbjct: 331 AIGRLSFAPGLFNINEPIMFGAPIVLNPILGIPFLLIPIFNIIVAYTLTNFGIIERVRTL 390
Query: 352 VPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVK 392
VP TP+ + F ++ D + + ++L++ F+Y PF+K
Sbjct: 391 VPWTTPAPIAAFFSTGLDIKSFVLVLLLLIISVFMYLPFIK 431
>gi|131495|sp|P24400|PTLB_LACCA PTS system, lactose-specific IIBC
component (EIIBC-LAC) (Lactose-permease IIBC component)
(Phosphotransferase enzyme II, BC component) (EII-LAC)
gi|98657|pir||B23697 phosphotransferase system enzyme II (EC
2.7.1.69) - Lactobacillus casei
gi|149563|gb|AAA72984.1| phosphotransferase system lactose-specific
enzyme II
Length = 577
Score = 53.1 bits (126), Expect = 9e-06
Identities = 45/154 (29%), Positives = 71/154 (45%), Gaps = 15/154 (9%)
Query: 244 QHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIF 303
QH + + T V N FGG G L + +L+ +R Q K K + P F
Sbjct: 266 QHVSHVLAMNTMDYVMN----FGGTGATLVVPFIMLFAARSAQLKAVGKAAFV---PCTF 318
Query: 304 DQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGF 363
N P L G+P+I+ P+LFIP + T I + + ++ +YT+P P + G
Sbjct: 319 GVNEPVLFGMPIIMNPMLFIPFLATPIVNVCLFKFFVSVLGMNSMMYTMPWTVPGPI-GI 377
Query: 364 LASNGDWRYLPVTAII----LVVGFFIYRPFVKI 393
L S G + P+ + LV+ IY PF+++
Sbjct: 378 LISTG---FAPLAFVFVLLTLVLDVAIYFPFIRV 408
>gi|1771122|emb|CAB02556.1| LacE [Lactobacillus casei]
Length = 577
Score = 52.8 bits (125), Expect = 1e-05
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 244 QHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIF 303
QH + + T V N FGG G L + +L+ +R Q K K + P F
Sbjct: 266 QHVSHVLAMNTMDYVMN----FGGTGATLVVPFIMLFAARSAQLKAVGKAAFV---PCTF 318
Query: 304 DQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGF 363
N P L G+P+I+ PI FIP + T I + + ++ +YT+P P + G
Sbjct: 319 GVNEPVLFGMPIIMNPIFFIPFLATPIVNVCLFKFFVSVLGMNSMMYTMPWTVPGPI-GI 377
Query: 364 LASNGDWRYLPVTAII----LVVGFFIYRPFVKI 393
L S G + P+ + LV+ IY PF+++
Sbjct: 378 LISTG---FAPLAFVFVLLTLVLDVAIYFPFIRV 408
>gi|20806849|ref|NP_622020.1| Phosphotransferase system
cellobiose-specific component IIC [Thermoanaerobacter
tengcongensis]
gi|20515318|gb|AAM23624.1| Phosphotransferase system
cellobiose-specific component IIC [Thermoanaerobacter
tengcongensis]
Length = 429
Score = 52.0 bits (123), Expect = 2e-05
Identities = 59/197 (29%), Positives = 95/197 (47%), Gaps = 11/197 (5%)
Query: 201 IPIMLWSILAI-FLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKI-PYLYT--FY 256
+P ++ +ILAI FL G+ ++ + NAA +KI P++ T F+
Sbjct: 216 LPAVILAILAIQFLWSVGIHGAALVGGILGPIWLTFTQENAAAKIAGEKILPHIVTQQFF 275
Query: 257 TVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVI 316
+ F GG G L+L L +L+ ++ Q K K + P IF+ N P G+P++
Sbjct: 276 DI---FIYIGGSGTTLALALLLLFATKSEQLKAVGK---AAIGPGIFNINEPITFGMPIV 329
Query: 317 LQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVT 376
+ P++ IP +L I A + L V +P TP L+ GFL + GDW+ + +
Sbjct: 330 MNPVMIIPFILAPIAAALITYFAMALNLVARPYALIPWTTPVLISGFL-TTGDWKAIILQ 388
Query: 377 AIILVVGFFIYRPFVKI 393
I V IY PF+K+
Sbjct: 389 IINFAVAGAIYYPFLKL 405
>gi|23003446|ref|ZP_00047109.1| hypothetical protein [Lactobacillus
gasseri]
Length = 450
Score = 52.0 bits (123), Expect = 2e-05
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
N+F + GG G L + L + + SR SK +L L P +F+ N P L GLP++
Sbjct: 305 NAFVIMGGSGATLGMALWMAFASR---SKQLRELGKLEAVPAVFNINEPLLFGLPIVYNV 361
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAII 379
LF+P +L + + V + P P + G +A+ W+ + +
Sbjct: 362 RLFVPFLLAPMTCSMVAYAAIATHLVPKIIVQQPWPIPVGIGGMMAT-ASWQGAVLALVN 420
Query: 380 LVVGFFIYRPFVK 392
+V F I+ PF+K
Sbjct: 421 AIVAFLIWYPFIK 433
>gi|22991068|ref|ZP_00035831.1| hypothetical protein [Enterococcus
faecium]
Length = 436
Score = 51.6 bits (122), Expect = 3e-05
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 200 LIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNA-ALSQHTDKIPYLYTFYTV 258
L+P+ L +L F + G+ + + RP + ++ EN A A ++PY+
Sbjct: 228 LLPMFLIHLLWSF-GIHGMSIVGAVVRPM-WLIMLDENAKALADGTAATQLPYIAPEQFY 285
Query: 259 KNSFAMFG-GIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVIL 317
+ + + G G I++S+ +S+ L+ + ++ P IF+ N P + G P++L
Sbjct: 286 QWTVTIGGAGATIVVSVLFIFFCKSKFLKEVGRF-----SIIPGIFNINEPIIFGAPMML 340
Query: 318 QPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTA 377
P +FIP L + + L+ V+ P+ + G+L++ DWR + +
Sbjct: 341 NPYMFIPFNLVPLVLTIISYFAVKLEMVNRFTVLPTWTLPAPIGGYLSAGNDWRVVILIM 400
Query: 378 IILVVGFFIYRPFVK 392
I ++ F IY PFVK
Sbjct: 401 INTLIAFIIYYPFVK 415
>gi|15893677|ref|NP_347026.1| PTS cellobiose-specific component IIC
[Clostridium acetobutylicum]
gi|25326294|pir||C96947 PTS cellobiose-specific component IIC
[imported] - Clostridium acetobutylicum
gi|15023236|gb|AAK78366.1|AE007553_6 PTS cellobiose-specific
component IIC [Clostridium acetobutylicum]
Length = 450
Score = 50.8 bits (120), Expect = 4e-05
Identities = 42/136 (30%), Positives = 66/136 (47%), Gaps = 8/136 (5%)
Query: 259 KNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQ 318
+++F GG GI L L A +R S+ +L L L P F+ N P L GLP++L
Sbjct: 305 QDNFVTLGGSGITLGLVAACFLFAR---SQRLKQLGKLALVPGCFNINEPVLFGLPIVLN 361
Query: 319 PILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPS--GTPSLLFGFLASNGDWRYLPVT 376
P++FIP ++ + + +Y V P V + TP +L G + + WR +
Sbjct: 362 PLMFIPFLICPLVSGILTYFAIYTGLV-PCFTAVQAIWTTPPVLSGLIVAG--WRGAVLQ 418
Query: 377 AIILVVGFFIYRPFVK 392
II+ + +Y PF K
Sbjct: 419 LIIIAIAAIVYFPFFK 434
>gi|22992208|ref|ZP_00036867.1| hypothetical protein [Enterococcus
faecium]
Length = 430
Score = 50.4 bits (119), Expect = 5e-05
Identities = 40/134 (29%), Positives = 62/134 (45%), Gaps = 6/134 (4%)
Query: 260 NSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQP 319
+ F G G+ L AV + + +SK Y +L L L P F+ N + P+++ P
Sbjct: 278 DQFMTVTGAGLTLG---AVFFMTVFAKSKKYRELGNLALLPAFFNINESIIFSTPIVMNP 334
Query: 320 ILFIPMVLTTIFAEAFGALMLYLKFVDP-AVYTVPSGTPSLLFGFLASNGDWRYLPVTAI 378
++ +P + + + LY FV VP TP +L GFL G + I
Sbjct: 335 MMAVPFIFAPVVSGLITYSALYFGFVPLFTAVQVPWTTPPILSGFLV--GGVPAAILQGI 392
Query: 379 ILVVGFFIYRPFVK 392
+L + FFIY PF+K
Sbjct: 393 VLSISFFIYFPFLK 406
>gi|20807096|ref|NP_622267.1| Phosphotransferase system
cellobiose-specific component IIC [Thermoanaerobacter
tengcongensis]
gi|20515587|gb|AAM23871.1| Phosphotransferase system
cellobiose-specific component IIC [Thermoanaerobacter
tengcongensis]
Length = 436
Score = 50.4 bits (119), Expect = 6e-05
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 200 LIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYT--FYT 257
++ ++LWS L + G+ V + P+ + + NA + +P + T F+
Sbjct: 242 ILMMLLWS-----LGIHGMNVVSSIAYPFWMTQLAA---NAEAASRGLPLPGIVTEPFFH 293
Query: 258 VKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVIL 317
V F GG G L + L + S + L P IF+ N P + G P++L
Sbjct: 294 V---FTHLGGSGTTWPLTIMFLLSA----SMQLRTIGRAELIPAIFNINEPIIFGAPIVL 346
Query: 318 QPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSLLFGFLASNGDWRYLPVTA 377
PIL IP +L L V + +P P + GF++S G W+ +
Sbjct: 347 NPILIIPFILAPAAVVTINYFAFALNLVPRPLIQLPFTVPVFISGFISSGGHWQGALLQL 406
Query: 378 IILVVGFFIYRPFVKIAFAKEEQYEK 403
+ L+V IY PF ++ A+ + E+
Sbjct: 407 VDLIVAAIIYYPFFRMYEAQLLKNER 432
>gi|21397671|ref|NP_653656.1| PTS_EIIC, Phosphotransferase system,
EIIC [Bacillus anthracis A2012]
gi|30265234|ref|NP_847611.1| PTS system, cellobiose-specific IIC
component [Bacillus anthracis str. Ames]
gi|30259911|gb|AAP29097.1| PTS system, cellobiose-specific IIC
component [Bacillus anthracis str. Ames]
Length = 435
Score = 50.1 bits (118), Expect = 7e-05
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 15/212 (7%)
Query: 185 IQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQ 244
IQ+ G P ++ ++L +L F GL P+I+ + + N L Q
Sbjct: 210 IQSPLQSLAGTLPSAIVIVLLVHLLWFF----GLHGPNIVGGIIEPLYLPALEKNMKLFQ 265
Query: 245 HTDK---IPYLYT--FYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLT 299
+P + T F+ ++F GG G L+ + VL ++ Q + ++ L++
Sbjct: 266 GGTSAFDVPNIVTKPFF---DTFVYLGGSGATLAFLVVVLLVAKSAQLRG---VSRLSIG 319
Query: 300 PLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAVYTVPSGTPSL 359
P F+ N P + G P+IL P+LF+P ++T I + + +V V +P TP +
Sbjct: 320 PGAFNINEPVIFGTPIILNPVLFLPFIITPIVLVITSYTAISIGWVPKTVAMIPWATPPI 379
Query: 360 LFGFLASNGDWRYLPVTAIILVVGFFIYRPFV 391
+ G+L + G + V+ IY PFV
Sbjct: 380 ISGYLVTGGHLSGAILQLFNFVIAMVIYYPFV 411
>gi|16077650|ref|NP_388464.1| similar to cellobiose
phosphotransferase system enzyme II [Bacillus subtilis]
gi|7449992|pir||C69785 cellobiose phosphotransferase system enzym
homolog ydhO - Bacillus subtilis
gi|1945099|dbj|BAA19707.1| B. subtilis cellobiose
phosphotransferase system celB; P46317 (998)
transmembrane [Bacillus subtilis]
gi|2632896|emb|CAB12402.1| ydhO [Bacillus subtilis subsp. subtilis
str. 168]
Length = 442
Score = 50.1 bits (118), Expect = 7e-05
Identities = 55/212 (25%), Positives = 96/212 (44%), Gaps = 10/212 (4%)
Query: 193 LGDGPHQLIPIMLWSILAIFLTLSGLFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYL 252
LG G + + + + F L G + + + P + ++ ENL+A + +IP++
Sbjct: 220 LGSGIIPTLIAVFFIQILWFFGLHGQIIINSVMDPI-WNTLQVENLSAYTA--GKEIPHI 276
Query: 253 YTFYTVKNSFAMFGGIGILLSLFLAVLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVG 312
+ ++ GG G+ L++ +L + Q K K L L P IF+ N P + G
Sbjct: 277 ISKPFMEIYTVGMGGTGMTLAIVFTILIFMKSRQMKQVSK---LGLAPGIFNVNEPIIFG 333
Query: 313 LPVILQPILFIPMVLTTIFAEAFGALMLYLKFVDPAV-YTVPSGTPSLLFGFLASN---G 368
LP+++ PI+ +P VL + L + V P TVP P + G +A+N G
Sbjct: 334 LPIVMNPIIIVPWVLAPMVVTLVTYLAMSAGLVPPPTGVTVPWTVPLFINGIMATNSIMG 393
Query: 369 DWRYLPVTAIILVVGFFIYRPFVKIAFAKEEQ 400
L I+ V+ F + K+ AKE++
Sbjct: 394 GVMQLINLLIVFVIWFPFLKAMDKLNLAKEKE 425
>gi|32030775|ref|ZP_00133543.1| hypothetical protein [Haemophilus
somnus 2336]
Length = 413
Score = 50.1 bits (118), Expect = 8e-05
Identities = 69/238 (28%), Positives = 106/238 (43%), Gaps = 17/238 (7%)
Query: 158 MLAILLLISSILSHILYRYPNIDLEYLIQNHFSQWLGDGPHQLIPIMLWSILAIFLTLSG 217
+L I +L S + ++ + L I++ + ++G L+ + + IL SG
Sbjct: 179 VLGIRILFSKTEYNTIHEFVYTVLATPIRHFGTSYIG----ALLTVFMIDILWSVGINSG 234
Query: 218 LFVPDILFRPYSYFSVVSENLNAALSQHTDKIPYLYTFYTVKNSFAMFGGIGILLSLFLA 277
V IL RP+ + +ENL A + T F+ GG G L+L LA
Sbjct: 235 SMVNGIL-RPF-WLDNQAENLAAMQNGLTPPHVITEQFF----DMIFMGGSGSTLALVLA 288
Query: 278 VLYESRKLQSKNYYKLTLLTLTPLIFDQNLPFLVGLPVILQPILFIPMVLTTIFAEAFGA 337
+L SR +K K++ L +F+ N P L GLPVIL PI+ IP L +
Sbjct: 289 MLIFSRSQHAK---KVSRLAAGSSVFNINEPVLFGLPVILNPIMLIPFNLAPLVITTVQY 345
Query: 338 LMLYLKFV--DPAVYTVPSGTPSLLFGFLASNGDWRYLPVTAIILVVGFFIYRPFVKI 393
+ +YL V VY +P P +L GF+ + G + I L + IY PF +I
Sbjct: 346 VAMYLDIVATTTGVY-IPWTLPPVLSGFIVT-GHISGALIQVINLFIAAMIYLPFFRI 401
Database: nr
Posted date: Aug 11, 2003 9:58 AM
Number of letters in database: 479,114,161
Number of sequences in database: 1,487,057
Lambda K H
0.330 0.144 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,549,293
Number of Sequences: 1487057
Number of extensions: 15677568
Number of successful extensions: 56401
Number of sequences better than 1.0e-04: 135
Number of HSP's better than 0.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 56167
Number of HSP's gapped (non-prelim): 166
length of query: 405
length of database: 479,114,161
effective HSP length: 126
effective length of query: 279
effective length of database: 291,744,979
effective search space: 81396849141
effective search space used: 81396849141
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 117 (49.7 bits)