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Transcription

BASAL TRANSCRIPTION FACTORS

COG Name Group Contig Gene COG ID Score Evalue
Predicted transcription factor homolog of eukaryotic MBF1 K Contig14 or1959 COG1813 36 0.005
Predicted transcription factor homolog of eukaryotic MBF1 K Contig16 or2100 COG1813 36 0.002
Predicted transcription factor homolog of eukaryotic MBF1 K Contig9 or1774 COG1813 40 1e-04
Transcription antiterminator K Contig3 or1160 COG0250 177 5e-46
Transcription elongation factor K Contig10 or1511 COG0782 132 1e-32
Transcription elongation factor K Contig12 or2310 COG0195 170 2e-43
Transcription elongation factor K Contig12 or2324 COG0782 90 6e-20
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB K Contig3 or1174 COG1405 34 0.003
Transcription termination factor K Contig13 or1821 COG0781 105 1e-24
Transcription termination factor K Contig7 or0215 COG0781 41 1e-04
Transcription termination factor K Contig7 or0245 COG1158 578 1.0e-166
Transcription termination factor K Contig7 or0306 COG1158 39 7e-04
COG Name Group Contig Gene COG ID Score Evalue
Biotin operon repressor K Contig10 or1363 COG1654 35 0.004
Biotin operon repressor K Contig3 or1220 COG1654 50 3e-07
Cold shock protein K Contig2 or0662 COG1278 86 3e-19
Cold shock protein K Contig3 or1315 COG1278 86 6e-19
DNA-binding HTH domain-containing protein K Contig10 or1410 COG2771 62 3e-11
DNA-binding HTH domain-containing protein K Contig10 or1527 COG2771 65 2e-12
DNA-binding HTH domain-containing protein K Contig22 or2463 COG2771 57 9e-10
DNA-binding HTH domain-containing protein K Contig5 or0938 COG2771 59 3e-10
DNA-binding winged-HTH domains K Contig19 or2350 COG3710 78 7e-16
DNA-binding winged-HTH domains K Contig5 or0707 COG3710 73 1e-14
DNA-binding winged-HTH domains K Contig5 or0817 COG3710 65 3e-12
DNA-binding winged-HTH domains K Contig5 or0852 COG3710 69 3e-13
DNA-binding winged-HTH domains K Contig5 or0927 COG3710 66 3e-12

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit K Contig5 or0757 COG0202 276 1e-75
DNA-directed RNA polymerase beta subunit/140 kD subunit K Contig4 or2080 COG0085 1207 0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit K Contig4 or2081 COG0086 634 0.0
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) K Contig16 or2133 COG0568 35 0.005
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) K Contig18 or2500 COG0568 45 4e-06
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) K Contig7 or0135 COG0568 308 6e-85
DNA-directed RNA polymerase specialized sigma subunit K Contig10 or1410 COG1191 35 0.006
DNA-directed RNA polymerase specialized sigma subunit K Contig16 or2133 COG1191 38 5e-04
DNA-directed RNA polymerase specialized sigma subunit K Contig18 or2500 COG1191 43 2e-05
DNA-directed RNA polymerase specialized sigma subunit K Contig7 or0135 COG1191 117 1e-27
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K Contig10 or1410 COG1595 34 0.008
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K Contig16 or2133 COG1595 103 8e-24
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog K Contig22 or2463 COG1595 35 0.004
DNA-directed RNA polymerase subunit E' K Contig13 or1803 COG1095 43 1e-04
DNA-directed RNA polymerase subunit E' K Contig2 or0522 COG1095 57 3e-09
DNA-directed RNA polymerase subunit E' K Contig3 or1343 COG1095 38 2e-04
DNA-directed RNA polymerase subunit K/omega K Contig5 or0783 COG1758 39 9e-05
COG Name Group Contig Gene COG ID Score Evalue
DNA helicase TIP49 TBP-interacting protein K Contig10 or1505 COG1224 39 6e-04
DNA helicase TIP49 TBP-interacting protein K Contig13 or1867 COG1224 36 0.006
DNA helicase TIP49 TBP-interacting protein K Contig1 or1671 COG1224 38 0.002
DNA helicase TIP49 TBP-interacting protein K Contig2 or0555 COG1224 43 6e-05
DNA helicase TIP49 TBP-interacting protein K Contig7 or0111 COG1224 51 2e-07
DNA helicase TIP49 TBP-interacting protein K Contig7 or0114 COG1224 38 7e-04
DNA or RNA helicase of superfamily II K Contig11 or0986 COG1061 68 3e-12
DNA or RNA helicase of superfamily II K Contig11 or1069 COG1061 40 6e-04
DNA or RNA helicase of superfamily II K Contig15 or2472 COG1061 68 3e-12
DNA or RNA helicase of superfamily II K Contig16 or2142 COG1061 63 2e-10
DNA or RNA helicase of superfamily II K Contig16 or2155 COG1061 37 0.009
DNA or RNA helicase of superfamily II K Contig18 or2485 COG1061 40 5e-04
DNA or RNA helicase of superfamily II K Contig1 or1550 COG1061 40 4e-04
DNA or RNA helicase of superfamily II K Contig2 or0564 COG1061 62 2e-10
DNA or RNA helicase of superfamily II K Contig7 or0026 COG1061 83 5e-17
DNA or RNA helicase of superfamily II K Contig7 or0142 COG1061 69 2e-12
DNA or RNA helicase of superfamily II K Contig7 or0333 COG1061 55 2e-08
DNA or RNA helicase of superfamily II K Contig9 or1704 COG1061 71 3e-13
Exoribonuclease II K Contig13 or1787 COG4776 174 2e-44
Exoribonuclease II K Contig7 or0394 COG4776 104 2e-23
Exoribonuclease R K Contig13 or1787 COG0557 547 1.0e-156
Exoribonuclease R K Contig13 or1803 COG0557 46 1e-05
Exoribonuclease R K Contig2 or0522 COG0557 48 2e-06
Exoribonuclease R K Contig3 or1343 COG0557 36 7e-04
Exoribonuclease R K Contig7 or0394 COG0557 224 1e-59
Guanosine polyphosphate pyrophosphohydrolase/synthetase K Contig2 or0513 COG0317 50 5e-07
Guanosine polyphosphate pyrophosphohydrolase/synthetase K Contig3 or1224 COG0317 797 0.0
Histone acetyltransferase K Contig7 or0074 COG1243 71 1e-13
NAD-dependent protein deacetylase SIR2 family K Contig19 or2367 COG0846 33 0.006
NAD-dependent protein deacetylase SIR2 family K Contig5 or0895 COG0846 271 5e-74
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase K Contig19 or2334 COG0378 48 7e-07
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase K Contig3 or1301 COG0378 36 0.006
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase K Contig6 or1931 COG0378 37 0.002
Nucleosome binding factor SPN SPT16 subunit K Contig5 or0751 COG5406 41 1e-04
Nucleosome binding factor SPN SPT16 subunit K Contig7 or0241 COG5406 45 8e-06
Phage shock protein A (IM30) suppresses sigma54-dependent transcription K Contig2 or0565 COG1842 37 0.005
Phage shock protein A (IM30) suppresses sigma54-dependent transcription K Contig2 or0657 COG1842 81 7e-17
Phage shock protein A (IM30) suppresses sigma54-dependent transcription K Contig7 or0184 COG1842 40 2e-04
Phenylacetic acid-responsive transcriptional repressor K Contig2 or0514 COG3327 121 5e-29
Predicted nucleic-acid-binding protein implicated in transcription termination K Contig12 or2309 COG2740 85 8e-19
Predicted RNA-binding protein homologous to eukaryotic snRNP K Contig10 or1497 COG1293 259 3e-70
Predicted RNA-binding protein homologous to eukaryotic snRNP K Contig4 or2076 COG1293 42 2e-04
Predicted RNA polymerase sigma factor containing a TPR repeat domain K Contig16 or2133 COG4941 36 0.002
Predicted transcriptional regulator protein containing CBS domains K Contig10 or1520 COG4109 65 1e-11
Predicted transcriptional regulator protein containing CBS domains K Contig11 or1057 COG4109 35 0.001
Predicted transcriptional regulator protein containing CBS domains K Contig12 or2298 COG4109 43 5e-05
Predicted transcriptional regulator protein containing CBS domains K Contig13 or1799 COG4109 42 2e-05
Predicted transcriptional regulator protein containing CBS domains K Contig16 or2125 COG4109 44 4e-06
Predicted transcriptional regulator protein containing CBS domains K Contig19 or2351 COG4109 67 3e-12
Predicted transcriptional regulator protein containing CBS domains K Contig19 or2359 COG4109 53 7e-09
Predicted transcriptional regulator protein containing CBS domains K Contig2 or0691 COG4109 41 3e-05
Predicted transcriptional regulator protein containing CBS domains K Contig4 or2089 COG4109 36 8e-04
Predicted transcriptional regulator protein containing CBS domains K Contig6 or1902 COG4109 55 1e-08
Predicted transcriptional regulator protein containing CBS domains K Contig7 or0055 COG4109 47 8e-07
Predicted transcriptional regulator protein containing CBS domains K Contig7 or0159 COG4109 48 5e-07
Predicted transcriptional regulator protein containing CBS domains K Contig8 or2169 COG4109 37 0.005
Predicted transcriptional regulator protein K Contig10 or1363 COG4189 44 8e-06
Predicted transcriptional regulator protein K Contig10 or1363 COG3888 36 0.002
Predicted transcriptional regulator protein K Contig10 or1454 COG4190 38 0.001
Predicted transcriptional regulator protein K Contig11 or1080 COG4742 37 3e-04
Predicted transcriptional regulator protein K Contig17 or2223 COG4742 51 8e-08
Predicted transcriptional regulator protein K Contig2 or0600 COG5340 35 0.009
Predicted transcriptional regulator protein with an HTH domain K Contig10 or1440 COG4800 34 0.002
Rad3-related DNA helicase K Contig16 or2142 COG1199 212 1e-55
Rad3-related DNA helicase K Contig16 or2157 COG1199 35 0.005
RecG-like helicase K Contig11 or0986 COG1200 369 1.0e-103
RecG-like helicase K Contig15 or2472 COG1200 46 2e-05
RecG-like helicase K Contig16 or2142 COG1200 64 1e-10
RecG-like helicase K Contig2 or0564 COG1200 48 2e-06
RecG-like helicase K Contig7 or0026 COG1200 61 2e-10
RecG-like helicase K Contig7 or0142 COG1200 48 3e-06
RecG-like helicase K Contig9 or1704 COG1200 737 0.0
Regulators of stationary/sporulation gene expression K Contig16 or2104 COG2002 36 7e-04
Regulators of stationary/sporulation gene expression K Contig5 or0789 COG2002 41 2e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig10 or1410 COG4567 46 2e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig10 or1527 COG4567 64 8e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig11 or1011 COG4567 48 2e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig19 or2350 COG4567 53 1e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig1 or1584 COG4567 55 7e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig5 or0707 COG4567 68 5e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig5 or0817 COG4567 62 5e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig5 or0852 COG4567 54 9e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig5 or0927 COG4567 63 2e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig5 or0938 COG4567 57 1e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig7 or0032 COG4567 60 5e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig7 or0157 COG4567 50 2e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain K Contig8 or2166 COG4567 57 4e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig10 or1410 COG3437 61 5e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig10 or1527 COG3437 75 5e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig11 or1011 COG3437 64 2e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig19 or2350 COG3437 74 1e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig1 or1584 COG3437 217 8e-58
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig2 or0567 COG3437 202 6e-53
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig5 or0707 COG3437 94 7e-21
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig5 or0817 COG3437 95 5e-21
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig5 or0852 COG3437 77 1e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig5 or0914 COG3437 197 9e-52
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig5 or0927 COG3437 78 4e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig5 or0938 COG3437 51 7e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig7 or0032 COG3437 64 4e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig7 or0157 COG3437 87 1e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig7 or0192 COG3437 212 1e-55
Response regulator containing a CheY-like receiver domain and an HD-GYP domain K Contig8 or2166 COG3437 79 7e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig10 or1410 COG2197 184 3e-48
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig10 or1527 COG2197 166 1e-42
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig11 or1011 COG2197 69 7e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig19 or2350 COG2197 79 2e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig1 or1584 COG2197 77 3e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig22 or2463 COG2197 82 3e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig5 or0707 COG2197 79 3e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig5 or0817 COG2197 79 3e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig5 or0852 COG2197 70 1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig5 or0927 COG2197 81 9e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig5 or0938 COG2197 216 8e-58
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig7 or0032 COG2197 67 3e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig7 or0157 COG2197 75 3e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K Contig8 or2166 COG2197 71 2e-14
Response regulator of citrate/malate metabolism K Contig10 or1363 COG4565 46 2e-06
Response regulator of citrate/malate metabolism K Contig10 or1410 COG4565 69 2e-13
Response regulator of citrate/malate metabolism K Contig10 or1527 COG4565 63 1e-11
Response regulator of citrate/malate metabolism K Contig11 or1011 COG4565 64 3e-12
Response regulator of citrate/malate metabolism K Contig19 or2350 COG4565 65 3e-12
Response regulator of citrate/malate metabolism K Contig1 or1584 COG4565 64 9e-12
Response regulator of citrate/malate metabolism K Contig5 or0707 COG4565 86 3e-18
Response regulator of citrate/malate metabolism K Contig5 or0817 COG4565 55 5e-09
Response regulator of citrate/malate metabolism K Contig5 or0852 COG4565 63 2e-11
Response regulator of citrate/malate metabolism K Contig5 or0927 COG4565 64 1e-11
Response regulator of citrate/malate metabolism K Contig5 or0938 COG4565 70 1e-13
Response regulator of citrate/malate metabolism K Contig7 or0032 COG4565 76 9e-16
Response regulator of citrate/malate metabolism K Contig7 or0157 COG4565 62 3e-11
Response regulator of citrate/malate metabolism K Contig8 or2166 COG4565 51 3e-08
Response regulator of the LytR/AlgR family K Contig10 or1410 COG3279 53 1e-08
Response regulator of the LytR/AlgR family K Contig10 or1527 COG3279 63 1e-11
Response regulator of the LytR/AlgR family K Contig11 or1011 COG3279 46 1e-06
Response regulator of the LytR/AlgR family K Contig19 or2350 COG3279 52 5e-08
Response regulator of the LytR/AlgR family K Contig1 or1584 COG3279 55 8e-09
Response regulator of the LytR/AlgR family K Contig5 or0707 COG3279 60 1e-10
Response regulator of the LytR/AlgR family K Contig5 or0817 COG3279 53 1e-08
Response regulator of the LytR/AlgR family K Contig5 or0852 COG3279 52 5e-08
Response regulator of the LytR/AlgR family K Contig5 or0927 COG3279 55 5e-09
Response regulator of the LytR/AlgR family K Contig5 or0938 COG3279 63 1e-11
Response regulator of the LytR/AlgR family K Contig7 or0032 COG3279 44 3e-06
Response regulator of the LytR/AlgR family K Contig7 or0157 COG3279 52 6e-08
Response regulator of the LytR/AlgR family K Contig8 or2166 COG3279 47 3e-07
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig10 or1410 COG0745 67 1e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig10 or1527 COG0745 78 4e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig11 or1011 COG0745 103 4e-24
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig19 or2350 COG0745 214 3e-57
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig1 or1584 COG0745 95 7e-21
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig5 or0707 COG0745 215 2e-57
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig5 or0817 COG0745 228 2e-61
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig5 or0852 COG0745 178 3e-46
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig5 or0927 COG0745 210 5e-56
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig5 or0938 COG0745 75 4e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig7 or0032 COG0745 107 2e-25
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig7 or0157 COG0745 88 7e-19
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig8 or2166 COG0745 97 4e-22
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K Contig9 or1766 COG0745 34 0.004
Serine/threonine protein kinase K Contig19 or2336 COG0515 160 2e-40
Serine/threonine protein kinase K Contig5 or0851 COG0515 182 6e-47
Serine/threonine protein kinase K Contig5 or0920 COG0515 124 8e-30
Serine/threonine protein kinase K Contig7 or0285 COG0515 115 3e-27
SOS-response transcriptional repressors (RecA-mediated autopeptidase) K Contig10 or1439 COG1974 68 6e-13
SOS-response transcriptional repressors (RecA-mediated autopeptidase) K Contig3 or1247 COG1974 75 4e-15
Sugar diacid utilization regulator K Contig11 or1046 COG3835 53 4e-08
Superfamily II DNA and RNA helicase K Contig11 or0986 COG0513 73 1e-13
Superfamily II DNA and RNA helicase K Contig15 or2472 COG0513 59 1e-09
Superfamily II DNA and RNA helicase K Contig16 or2142 COG0513 117 7e-27
Superfamily II DNA and RNA helicase K Contig16 or2155 COG0513 49 2e-06
Superfamily II DNA and RNA helicase K Contig16 or2157 COG0513 44 7e-06
Superfamily II DNA and RNA helicase K Contig1 or1550 COG0513 60 6e-10
Superfamily II DNA and RNA helicase K Contig2 or0564 COG0513 66 6e-12
Superfamily II DNA and RNA helicase K Contig7 or0026 COG0513 373 1.0e-104
Superfamily II DNA and RNA helicase K Contig7 or0142 COG0513 90 4e-19
Superfamily II DNA and RNA helicase K Contig9 or1704 COG0513 81 4e-16
Superfamily II DNA/RNA helicase SNF2 family K Contig15 or2472 COG0553 68 3e-12
Superfamily II DNA/RNA helicase SNF2 family K Contig18 or2485 COG0553 85 1e-17
Transcriptional accessory protein K Contig13 or1803 COG2183 69 1e-12
Transcriptional accessory protein K Contig2 or0522 COG2183 64 2e-11
Transcriptional accessory protein K Contig2 or0641 COG2183 37 2e-04
Transcriptional accessory protein K Contig3 or1343 COG2183 72 1e-14
Transcriptional activator of acetoin/glycerol metabolism K Contig2 or0555 COG3284 38 0.002
Transcriptional activator of acetoin/glycerol metabolism K Contig5 or0820 COG3284 43 2e-05
Transcriptional activator of acetoin/glycerol metabolism K Contig6 or1913 COG3284 34 0.009
Transcriptional activator of acetoin/glycerol metabolism K Contig6 or1931 COG3284 35 0.007
Transcriptional activator of acetoin/glycerol metabolism K Contig7 or0111 COG3284 43 7e-05
Transcriptional activator of acetoin/glycerol metabolism K Contig9 or1715 COG3284 37 0.005
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K Contig5 or0796 COG4977 39 4e-04
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K Contig7 or0037 COG4977 38 4e-04

TRANSCRIPTIONAL REGULATORS

COG Name Group Contig Gene COG ID Score Evalue
Arginine repressor K Contig5 or0785 COG1438 153 7e-39
ATP-dependent transcriptional regulator protein K Contig10 or1410 COG2909 51 7e-08
ATP-dependent transcriptional regulator protein K Contig10 or1527 COG2909 60 9e-11
ATP-dependent transcriptional regulator protein K Contig11 or1125 COG2909 100 4e-22
ATP-dependent transcriptional regulator protein K Contig13 or1868 COG2909 36 0.005
ATP-dependent transcriptional regulator protein K Contig22 or2463 COG2909 46 2e-06
ATP-dependent transcriptional regulator protein K Contig5 or0938 COG2909 58 7e-10
ATP-dependent transcriptional regulator protein K Contig9 or1685 COG2909 58 3e-09
Mn-dependent transcriptional regulator protein K Contig0 or2450 COG1321 41 7e-05
Mn-dependent transcriptional regulator protein K Contig10 or1382 COG1321 145 3e-36
Mn-dependent transcriptional regulator protein K Contig11 or1080 COG1321 33 0.005
Mn-dependent transcriptional regulator protein K Contig17 or2223 COG1321 38 5e-04
Predicted transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains K Contig24 or2519 COG1327 204 3e-54
Predicted transcriptional regulator protein containing the HTH domain K Contig7 or0418 COG1386 138 2e-34
Predicted transcriptional regulator protein K Contig0 or2450 COG1725 42 4e-05
Predicted transcriptional regulator protein K Contig10 or1363 COG3355 43 2e-05
Predicted transcriptional regulator protein K Contig10 or1363 COG1777 40 2e-04
Predicted transcriptional regulator protein K Contig10 or1363 COG2345 115 2e-27
Predicted transcriptional regulator protein K Contig10 or1363 COG1378 35 0.004
Predicted transcriptional regulator protein K Contig10 or1363 COG2865 35 0.003
Predicted transcriptional regulator protein K Contig10 or1382 COG2524 39 4e-04
Predicted transcriptional regulator protein K Contig10 or1399 COG0789 61 1e-10
Predicted transcriptional regulator protein K Contig10 or1439 COG2932 45 6e-06
Predicted transcriptional regulator protein K Contig10 or1454 COG3355 35 0.007
Predicted transcriptional regulator protein K Contig10 or1520 COG3620 48 2e-06
Predicted transcriptional regulator protein K Contig10 or1520 COG2524 70 4e-13
Predicted transcriptional regulator protein K Contig10 or1527 COG2345 35 0.003
Predicted transcriptional regulator protein K Contig11 or1080 COG1733 109 6e-26
Predicted transcriptional regulator protein K Contig12 or2297 COG1733 34 0.005
Predicted transcriptional regulator protein K Contig12 or2297 COG1378 34 0.007
Predicted transcriptional regulator protein K Contig12 or2298 COG3620 43 4e-05
Predicted transcriptional regulator protein K Contig12 or2298 COG2524 49 4e-07
Predicted transcriptional regulator protein K Contig13 or1799 COG3620 52 2e-08
Predicted transcriptional regulator protein K Contig13 or1799 COG2524 63 1e-11
Predicted transcriptional regulator protein K Contig14 or1967 COG0640 53 6e-09
Predicted transcriptional regulator protein K Contig15 or2473 COG1475 73 4e-14
Predicted transcriptional regulator protein K Contig16 or2100 COG1396 34 0.006
Predicted transcriptional regulator protein K Contig16 or2100 COG3620 35 0.003
Predicted transcriptional regulator protein K Contig16 or2151 COG2524 38 0.001
Predicted transcriptional regulator protein K Contig17 or2254 COG1396 43 2e-05
Predicted transcriptional regulator protein K Contig17 or2254 COG3620 48 5e-07
Predicted transcriptional regulator protein K Contig17 or2254 COG1476 36 0.002
Predicted transcriptional regulator protein K Contig17 or2255 COG2524 39 5e-04
Predicted transcriptional regulator protein K Contig17 or2261 COG1475 75 7e-15
Predicted transcriptional regulator protein K Contig19 or2351 COG3620 45 2e-05
Predicted transcriptional regulator protein K Contig19 or2351 COG2524 61 2e-10
Predicted transcriptional regulator protein K Contig19 or2359 COG2524 68 4e-13
Predicted transcriptional regulator protein K Contig1 or1649 COG1959 34 0.003
Predicted transcriptional regulator protein K Contig1 or1649 COG2345 35 0.001
Predicted transcriptional regulator protein K Contig21 or2399 COG0789 37 5e-04
Predicted transcriptional regulator protein K Contig2 or0600 COG1959 38 0.001
Predicted transcriptional regulator protein K Contig2 or0600 COG2865 227 1e-60
Predicted transcriptional regulator protein K Contig2 or0603 COG2524 48 8e-07
Predicted transcriptional regulator protein K Contig2 or0643 COG1475 134 6e-33
Predicted transcriptional regulator protein K Contig2 or0691 COG3620 53 9e-09
Predicted transcriptional regulator protein K Contig2 or0691 COG2524 63 9e-12
Predicted transcriptional regulator protein K Contig3 or1247 COG2932 63 1e-11
Predicted transcriptional regulator protein K Contig6 or1902 COG3620 45 8e-06
Predicted transcriptional regulator protein K Contig6 or1902 COG2524 60 2e-10
Predicted transcriptional regulator protein K Contig6 or1914 COG0789 57 1e-09
Predicted transcriptional regulator protein K Contig7 or0055 COG3620 60 1e-10
Predicted transcriptional regulator protein K Contig7 or0055 COG2524 83 2e-17
Predicted transcriptional regulator protein K Contig7 or0159 COG3620 65 5e-12
Predicted transcriptional regulator protein K Contig7 or0159 COG2524 74 9e-15
Predicted transcriptional regulator protein K Contig7 or0235 COG2524 39 0.001
Predicted transcriptional regulator protein K Contig7 or0248 COG0640 49 4e-08
Predicted transcriptional regulator protein K Contig7 or0351 COG1959 137 4e-34
Predicted transcriptional regulator protein K Contig7 or0351 COG2524 35 0.002
Predicted transcriptional regulator protein K Contig8 or2169 COG3620 43 7e-05
Predicted transcriptional regulator protein K Contig8 or2169 COG2524 62 1e-10
Predicted transcriptional regulator protein K Contig8 or2174 COG3355 38 0.003
Predicted transcriptional regulator protein K Contig8 or2174 COG1959 38 0.002
Predicted transcriptional regulator protein K Contig8 or2179 COG1733 70 2e-14
Putative transcriptional regulator protein K Contig5 or0917 COG1521 209 2e-55
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig11 or1010 COG3604 40 0.001
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig2 or0567 COG3604 43 8e-05
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig3 or1259 COG3604 37 3e-04
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig5 or0820 COG3604 38 8e-04
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig7 or0192 COG3604 44 5e-05
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains K Contig7 or0193 COG3604 40 0.001
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig2 or0555 COG3829 37 0.003
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig3 or1195 COG3829 37 0.003
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig5 or0820 COG3829 41 7e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig7 or0111 COG3829 39 0.001
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains K Contig7 or0192 COG3829 37 0.006
Transcriptional regulator contains sigma factor-related N-terminal domain K Contig10 or1363 COG2390 34 0.006
Transcriptional regulator K Contig10 or1454 COG1414 47 2e-06
Transcriptional regulator K Contig11 or1066 COG1309 57 6e-10
Transcriptional regulator K Contig11 or1080 COG1414 33 0.008
Transcriptional regulator K Contig11 or1085 COG1309 58 4e-10
Transcriptional regulator K Contig20 or2423 COG0583 129 2e-31
Transcriptional regulator K Contig2 or0470 COG0583 90 2e-19
Transcriptional regulator K Contig3 or1297 COG1316 132 3e-32
Transcriptional regulator K Contig3 or1323 COG1309 57 7e-10
Transcriptional regulator K Contig6 or1913 COG1414 195 4e-51
Transcriptional regulator K Contig7 or0038 COG1309 48 5e-07
Transcriptional regulator K Contig7 or0280 COG1316 194 8e-51
Transcriptional regulator K Contig8 or2174 COG1414 108 1e-24
Transcriptional regulator of a riboflavin/FAD biosynthetic operon K Contig22 or2454 COG1339 35 0.008
Transcriptional regulator of a riboflavin/FAD biosynthetic operon K Contig22 or2470 COG1339 35 0.008
Transcriptional regulator of aromatic amino acids metabolism K Contig8 or2165 COG3283 38 0.001
Transcriptional regulator of heat shock gene K Contig2 or0603 COG1420 125 4e-30
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig0 or2450 COG1167 51 9e-08
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig10 or1372 COG1167 38 0.001
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig11 or0954 COG1167 174 9e-45
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig14 or1991 COG1167 57 2e-09
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig1 or1545 COG1167 42 8e-05
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig1 or1587 COG1167 110 1e-25
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig2 or0459 COG1167 128 5e-31
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig2 or0594 COG1167 167 1e-42
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig4 or2038 COG1167 39 6e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig7 or0130 COG1167 37 0.004
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig7 or0340 COG1167 76 3e-15
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs K Contig7 or0345 COG1167 332 2e-92
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 or1865 COG1221 43 6e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig13 or1867 COG1221 35 0.009
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig2 or0555 COG1221 45 8e-06
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig3 or1195 COG1221 39 8e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig5 or0820 COG1221 45 8e-06
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig7 or0111 COG1221 36 0.009
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig7 or0114 COG1221 44 2e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain K Contig9 or1715 COG1221 38 0.002
Transcriptional regulators K Contig0 or2450 COG1802 134 4e-33
Transcriptional regulators K Contig0 or2450 COG2188 49 4e-07
Transcriptional regulators K Contig0 or2450 COG2186 103 7e-24
Transcriptional regulators K Contig10 or1382 COG1846 36 0.002
Transcriptional regulators K Contig10 or1382 COG1802 36 0.002
Transcriptional regulators K Contig10 or1454 COG1522 46 4e-06
Transcriptional regulators K Contig12 or2297 COG1846 56 1e-09
Transcriptional regulators K Contig14 or2025 COG1609 247 8e-67
Transcriptional regulators K Contig17 or2223 COG1846 35 0.005
Transcriptional regulators K Contig17 or2223 COG1522 46 2e-06
Transcriptional regulators K Contig1 or1649 COG1846 41 2e-05
Transcriptional regulators K Contig2 or0566 COG1737 53 5e-08
Transcriptional regulators K Contig7 or0042 COG1737 51 1e-07
Transcriptional regulators K Contig8 or2159 COG1609 165 2e-42
Transcriptional regulators of sugar metabolism K Contig10 or1454 COG1349 36 0.003
Transcriptional regulators of sugar metabolism K Contig21 or2388 COG1349 35 0.007
Transcriptional regulators of sugar metabolism K Contig21 or2410 COG1349 35 0.007
Transcriptional regulators of sugar metabolism K Contig2 or0600 COG1349 36 0.004
Transcriptional regulators of sugar metabolism K Contig5 or0785 COG1349 39 2e-04
Transcriptional regulators of sugar metabolism K Contig7 or0174 COG1349 36 0.003
Transcriptional regulators similar to M. xanthus CarD K Contig3 or1322 COG1329 118 3e-28
Transcriptional regulator/sugar kinase K Contig2 or0547 COG1940 208 3e-55
COG Name Group Contig Gene COG ID Score Evalue
Transcription-repair coupling factor (superfamily II helicase) K Contig11 or0986 COG1197 854 0.0
Transcription-repair coupling factor (superfamily II helicase) K Contig15 or2472 COG1197 38 0.004
Transcription-repair coupling factor (superfamily II helicase) K Contig16 or2142 COG1197 55 3e-08
Transcription-repair coupling factor (superfamily II helicase) K Contig2 or0564 COG1197 140 3e-34
Transcription-repair coupling factor (superfamily II helicase) K Contig3 or1322 COG1197 39 1e-04
Transcription-repair coupling factor (superfamily II helicase) K Contig7 or0026 COG1197 48 2e-06
Transcription-repair coupling factor (superfamily II helicase) K Contig9 or1704 COG1197 377 1.0e-105

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