Transcription

BASAL TRANSCRIPTION FACTORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig14	Fnod1325	COG1813	34	0.008
Transcription antiterminator	K	Contig14	Fnod0848	COG0250	114	8e-27
Transcription elongation factor	K	Contig14	Fnod0647	COG0195	33	0.004
Transcription elongation factor	K	Contig14	Fnod0735	COG0195	153	2e-38
Transcription elongation factor	K	Contig14	Fnod1155	COG0782	130	3e-32
Transcription termination factor	K	Contig14	Fnod0096	COG0781	125	1e-30
Transcription termination factor	K	Contig14	Fnod0281	COG1158	618	1.0e-178
Transcription termination factor	K	Contig14	Fnod0325	COG1158	41	2e-04
Transcription termination factor	K	Contig14	Fnod0327	COG1158	41	2e-04
Transcription termination factor	K	Contig14	Fnod0758	COG1158	86	6e-18

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Biotin operon repressor	K	Contig14	Fnod0638	COG1654	39	2e-04
Cold shock protein	K	Contig14	Fnod0028	COG1278	98	1e-22
Cold shock protein	K	Contig14	Fnod1732	COG1278	98	1e-22
DNA-binding winged-HTH domains	K	Contig14	Fnod0785	COG3710	69	3e-13
DNA-binding winged-HTH domains	K	Contig14	Fnod1433	COG3710	70	1e-13
DNA-binding winged-HTH domains	K	Contig14	Fnod1490	COG3710	77	1e-15

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit	K	Contig14	Fnod1110	COG0202	262	3e-71
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	Contig14	Fnod1782	COG0085	1117	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	Contig14	Fnod1781	COG0086	603	1.0e-173
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig14	Fnod0232	COG0568	40	2e-04
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig14	Fnod0383	COG0568	87	1e-18
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig14	Fnod0431	COG0568	304	7e-84
DNA-directed RNA polymerase specialized sigma subunit	K	Contig14	Fnod0232	COG1191	59	3e-10
DNA-directed RNA polymerase specialized sigma subunit	K	Contig14	Fnod0383	COG1191	147	9e-37
DNA-directed RNA polymerase specialized sigma subunit	K	Contig14	Fnod0431	COG1191	126	2e-30
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig14	Fnod0232	COG1595	69	4e-13
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig14	Fnod0383	COG1595	52	4e-08
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig14	Fnod0431	COG1595	37	0.002
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig14	Fnod0719	COG1595	130	6e-32
DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog	K	Contig14	Fnod1185	COG1508	104	8e-24
DNA-directed RNA polymerase subunit E'	K	Contig14	Fnod0181	COG1095	50	8e-07
DNA-directed RNA polymerase subunit K/omega	K	Contig14	Fnod1676	COG1758	47	2e-07

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA helicase TIP49 TBP-interacting protein	K	Contig14	Fnod0144	COG1224	40	2e-04
DNA helicase TIP49 TBP-interacting protein	K	Contig14	Fnod0152	COG1224	43	3e-05
DNA helicase TIP49 TBP-interacting protein	K	Contig14	Fnod0159	COG1224	47	3e-06
DNA helicase TIP49 TBP-interacting protein	K	Contig14	Fnod0277	COG1224	47	3e-06
DNA or RNA helicase of superfamily II	K	Contig14	Fnod0489	COG1061	60	4e-10
DNA or RNA helicase of superfamily II	K	Contig14	Fnod0495	COG1061	62	8e-11
DNA or RNA helicase of superfamily II	K	Contig14	Fnod0497	COG1061	187	3e-48
DNA or RNA helicase of superfamily II	K	Contig14	Fnod0501	COG1061	40	0.001
DNA or RNA helicase of superfamily II	K	Contig14	Fnod0504	COG1061	58	4e-09
DNA or RNA helicase of superfamily II	K	Contig14	Fnod0636	COG1061	77	4e-15
DNA or RNA helicase of superfamily II	K	Contig14	Fnod0940	COG1061	46	1e-05
DNA or RNA helicase of superfamily II	K	Contig14	Fnod1019	COG1061	56	1e-08
DNA or RNA helicase of superfamily II	K	Contig14	Fnod1363	COG1061	59	3e-09
DNA or RNA helicase of superfamily II	K	Contig14	Fnod1404	COG1061	41	7e-04
DNA or RNA helicase of superfamily II	K	Contig14	Fnod1406	COG1061	243	5e-65
DNA or RNA helicase of superfamily II	K	Contig14	Fnod1579	COG1061	62	2e-10
DNA or RNA helicase of superfamily II	K	Contig14	Fnod1758	COG1061	50	1e-06
dsRNA-specific ribonuclease	K	Contig14	Fnod1081	COG0571	227	9e-61
Exoribonuclease II	K	Contig14	Fnod0181	COG4776	189	9e-49
Exoribonuclease R	K	Contig14	Fnod0168	COG0557	34	0.002
Exoribonuclease R	K	Contig14	Fnod0181	COG0557	637	0.0
Exoribonuclease R	K	Contig14	Fnod0392	COG0557	41	3e-04
Exoribonuclease R	K	Contig14	Fnod1233	COG0557	44	4e-05
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig14	Fnod1083	COG0317	684	0.0
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig14	Fnod1465	COG0317	39	2e-04
Histone acetyltransferase	K	Contig14	Fnod0347	COG1243	108	6e-25
Histone acetyltransferase	K	Contig14	Fnod0787	COG1243	170	1e-43
Histone acetyltransferase	K	Contig14	Fnod0969	COG1243	38	0.001
Histone acetyltransferase	K	Contig14	Fnod1034	COG1243	52	7e-08
Histone acetyltransferase	K	Contig14	Fnod1197	COG1243	35	0.004
Histone acetyltransferase	K	Contig14	Fnod1224	COG1243	58	1e-09
NAD-dependent protein deacetylase SIR2 family	K	Contig14	Fnod0747	COG0846	244	4e-66
Negative regulator of flagellin synthesis (anti-sigma28 factor)	K	Contig14	Fnod1653	COG2747	37	3e-04
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig14	Fnod0377	COG0378	39	5e-04
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig14	Fnod0671	COG0378	39	5e-04
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig14	Fnod1321	COG0378	63	4e-11
Nucleosome binding factor SPN SPT16 subunit	K	Contig14	Fnod0334	COG5406	46	5e-06
Nucleosome binding factor SPN SPT16 subunit	K	Contig14	Fnod1116	COG5406	36	0.003
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	K	Contig14	Fnod0299	COG1842	39	0.001
Pleiotropic transcriptional repressor	K	Contig14	Fnod1323	COG4465	35	0.003
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig14	Fnod0490	COG1293	304	1e-83
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig14	Fnod0748	COG1293	38	0.003
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig14	Fnod1220	COG1293	40	0.001
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig14	Fnod0719	COG4941	40	2e-04
Predicted transcriptional regulator protein containing CBS domains	K	Contig14	Fnod0116	COG4109	58	2e-09
Predicted transcriptional regulator protein containing CBS domains	K	Contig14	Fnod0429	COG4109	33	0.007
Predicted transcriptional regulator protein containing CBS domains	K	Contig14	Fnod0657	COG4109	54	2e-08
Predicted transcriptional regulator protein containing CBS domains	K	Contig14	Fnod0891	COG4109	70	1e-12
Predicted transcriptional regulator protein containing CBS domains	K	Contig14	Fnod0970	COG4109	71	2e-14
Predicted transcriptional regulator protein containing CBS domains	K	Contig14	Fnod1002	COG4109	44	2e-05
Predicted transcriptional regulator protein containing CBS domains	K	Contig14	Fnod1465	COG4109	36	0.002
Predicted transcriptional regulator protein containing CBS domains	K	Contig14	Fnod1523	COG4109	47	2e-06
Predicted transcriptional regulator protein	K	Contig14	Fnod0771	COG4742	39	6e-05
Predicted transcriptional regulator protein	K	Contig14	Fnod0771	COG4189	37	2e-04
Predicted transcriptional regulator protein	K	Contig14	Fnod0911	COG4742	35	0.004
Predicted transcriptional regulator protein	K	Contig14	Fnod1443	COG4189	33	0.008
Predicted transcriptional regulator protein	K	Contig14	Fnod1486	COG4189	45	1e-06
Predicted transcriptional regulator protein	K	Contig14	Fnod1613	COG4742	34	0.003
Predicted transcriptional regulator protein	K	Contig14	Fnod1613	COG4189	33	0.005
Rad3-related DNA helicase	K	Contig14	Fnod0636	COG1199	42	1e-04
Rad3-related DNA helicase	K	Contig14	Fnod1363	COG1199	38	0.005
Rad3-related DNA helicase	K	Contig14	Fnod1404	COG1199	39	0.002
RecG-like helicase	K	Contig14	Fnod0489	COG1200	47	5e-06
RecG-like helicase	K	Contig14	Fnod0495	COG1200	42	8e-05
RecG-like helicase	K	Contig14	Fnod0497	COG1200	40	6e-04
RecG-like helicase	K	Contig14	Fnod0636	COG1200	55	2e-08
RecG-like helicase	K	Contig14	Fnod0940	COG1200	37	0.007
RecG-like helicase	K	Contig14	Fnod1019	COG1200	774	0.0
RecG-like helicase	K	Contig14	Fnod1363	COG1200	46	1e-05
RecG-like helicase	K	Contig14	Fnod1579	COG1200	56	7e-09
RecG-like helicase	K	Contig14	Fnod1758	COG1200	354	2e-98
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod0046	COG4567	41	1e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod0092	COG4567	43	4e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod0596	COG4567	57	4e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod0692	COG4567	57	3e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod0785	COG4567	74	7e-15
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod0913	COG4567	52	1e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod0915	COG4567	46	7e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod1246	COG4567	49	4e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod1277	COG4567	37	0.006
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod1426	COG4567	50	5e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod1433	COG4567	63	1e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod1490	COG4567	53	1e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod1684	COG4567	46	2e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig14	Fnod1705	COG4567	36	0.005
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0011	COG3437	177	1e-45
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0014	COG3437	54	2e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0046	COG3437	69	4e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0092	COG3437	76	5e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0596	COG3437	70	5e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0659	COG3437	109	3e-25
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0692	COG3437	70	3e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0726	COG3437	136	1e-33
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0785	COG3437	98	4e-22
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0913	COG3437	53	6e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0915	COG3437	79	8e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0987	COG3437	36	0.004
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod0999	COG3437	41	2e-04
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1099	COG3437	193	3e-50
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1101	COG3437	202	4e-53
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1202	COG3437	176	8e-46
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1236	COG3437	193	3e-50
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1246	COG3437	63	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1277	COG3437	77	5e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1426	COG3437	67	4e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1433	COG3437	74	1e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1490	COG3437	98	5e-22
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1684	COG3437	54	8e-09
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig14	Fnod1705	COG3437	205	7e-54
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod0046	COG2197	96	4e-21
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod0092	COG2197	70	6e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod0596	COG2197	61	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod0692	COG2197	99	7e-23
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod0785	COG2197	84	8e-18
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod0913	COG2197	55	1e-08
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod0915	COG2197	91	2e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod1246	COG2197	68	5e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod1277	COG2197	78	2e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod1426	COG2197	69	9e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod1433	COG2197	78	5e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod1490	COG2197	85	4e-18
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig14	Fnod1684	COG2197	63	1e-11
Response regulator of citrate/malate metabolism	K	Contig14	Fnod0046	COG4565	74	1e-14
Response regulator of citrate/malate metabolism	K	Contig14	Fnod0092	COG4565	44	4e-06
Response regulator of citrate/malate metabolism	K	Contig14	Fnod0596	COG4565	38	0.002
Response regulator of citrate/malate metabolism	K	Contig14	Fnod0692	COG4565	79	1e-16
Response regulator of citrate/malate metabolism	K	Contig14	Fnod0785	COG4565	62	3e-11
Response regulator of citrate/malate metabolism	K	Contig14	Fnod0913	COG4565	47	3e-06
Response regulator of citrate/malate metabolism	K	Contig14	Fnod0915	COG4565	48	2e-06
Response regulator of citrate/malate metabolism	K	Contig14	Fnod1246	COG4565	81	1e-16
Response regulator of citrate/malate metabolism	K	Contig14	Fnod1277	COG4565	55	3e-08
Response regulator of citrate/malate metabolism	K	Contig14	Fnod1426	COG4565	50	4e-08
Response regulator of citrate/malate metabolism	K	Contig14	Fnod1433	COG4565	64	1e-11
Response regulator of citrate/malate metabolism	K	Contig14	Fnod1490	COG4565	56	2e-09
Response regulator of citrate/malate metabolism	K	Contig14	Fnod1684	COG4565	61	5e-11
Response regulator of the LytR/AlgR family	K	Contig14	Fnod0046	COG3279	62	8e-11
Response regulator of the LytR/AlgR family	K	Contig14	Fnod0092	COG3279	45	2e-06
Response regulator of the LytR/AlgR family	K	Contig14	Fnod0596	COG3279	39	7e-04
Response regulator of the LytR/AlgR family	K	Contig14	Fnod0692	COG3279	71	2e-14
Response regulator of the LytR/AlgR family	K	Contig14	Fnod0785	COG3279	67	9e-13
Response regulator of the LytR/AlgR family	K	Contig14	Fnod0915	COG3279	58	1e-09
Response regulator of the LytR/AlgR family	K	Contig14	Fnod1246	COG3279	148	5e-37
Response regulator of the LytR/AlgR family	K	Contig14	Fnod1277	COG3279	58	3e-09
Response regulator of the LytR/AlgR family	K	Contig14	Fnod1426	COG3279	57	3e-10
Response regulator of the LytR/AlgR family	K	Contig14	Fnod1433	COG3279	49	3e-07
Response regulator of the LytR/AlgR family	K	Contig14	Fnod1490	COG3279	58	5e-10
Response regulator of the LytR/AlgR family	K	Contig14	Fnod1684	COG3279	53	1e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod0046	COG0745	69	4e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod0092	COG0745	99	1e-22
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod0596	COG0745	74	3e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod0692	COG0745	85	1e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod0785	COG0745	222	1e-59
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod0913	COG0745	69	7e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod0915	COG0745	82	8e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod1246	COG0745	70	2e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod1277	COG0745	85	3e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod1426	COG0745	80	6e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod1433	COG0745	206	1e-54
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod1490	COG0745	241	4e-65
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig14	Fnod1684	COG0745	63	2e-11
Serine phosphatase RsbU regulator of sigma subunit	K	Contig14	Fnod0093	COG2208	164	1e-41
Serine phosphatase RsbU regulator of sigma subunit	K	Contig14	Fnod0219	COG2208	83	4e-17
Serine phosphatase RsbU regulator of sigma subunit	K	Contig14	Fnod0317	COG2208	56	4e-09
Serine phosphatase RsbU regulator of sigma subunit	K	Contig14	Fnod0999	COG2208	85	8e-18
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig14	Fnod0018	COG4650	139	4e-34
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig14	Fnod0793	COG1974	174	5e-45
Superfamily II DNA and RNA helicase	K	Contig14	Fnod0489	COG0513	74	3e-14
Superfamily II DNA and RNA helicase	K	Contig14	Fnod0495	COG0513	122	6e-29
Superfamily II DNA and RNA helicase	K	Contig14	Fnod0497	COG0513	62	1e-10
Superfamily II DNA and RNA helicase	K	Contig14	Fnod0636	COG0513	397	1.0e-112
Superfamily II DNA and RNA helicase	K	Contig14	Fnod0940	COG0513	73	6e-14
Superfamily II DNA and RNA helicase	K	Contig14	Fnod1019	COG0513	70	5e-13
Superfamily II DNA and RNA helicase	K	Contig14	Fnod1313	COG0513	41	5e-04
Superfamily II DNA and RNA helicase	K	Contig14	Fnod1363	COG0513	54	7e-08
Superfamily II DNA and RNA helicase	K	Contig14	Fnod1404	COG0513	51	5e-07
Superfamily II DNA and RNA helicase	K	Contig14	Fnod1406	COG0513	59	1e-09
Superfamily II DNA and RNA helicase	K	Contig14	Fnod1758	COG0513	71	4e-13
Transcriptional accessory protein	K	Contig14	Fnod0168	COG2183	46	7e-07
Transcriptional accessory protein	K	Contig14	Fnod0181	COG2183	39	0.001
Transcriptional accessory protein	K	Contig14	Fnod0392	COG2183	41	3e-04
Transcriptional accessory protein	K	Contig14	Fnod1233	COG2183	51	3e-07
Transcriptional accessory protein	K	Contig14	Fnod1405	COG2183	38	0.003
Transcriptional accessory protein	K	Contig14	Fnod1704	COG2183	51	8e-08
Transcriptional activator of acetoin/glycerol metabolism	K	Contig14	Fnod0018	COG3284	278	7e-76
Transcriptional activator of acetoin/glycerol metabolism	K	Contig14	Fnod0407	COG3284	38	0.004
Transcriptional activator of acetoin/glycerol metabolism	K	Contig14	Fnod0589	COG3284	40	4e-04
Transcriptional activator of acetoin/glycerol metabolism	K	Contig14	Fnod0813	COG3284	36	0.003
Transcriptional activator of acetoin/glycerol metabolism	K	Contig14	Fnod1359	COG3284	38	0.001

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Mn-dependent transcriptional regulator protein	K	Contig14	Fnod0133	COG1321	72	2e-14
Mn-dependent transcriptional regulator protein	K	Contig14	Fnod0146	COG1321	75	2e-15
Mn-dependent transcriptional regulator protein	K	Contig14	Fnod0150	COG1321	36	0.002
Mn-dependent transcriptional regulator protein	K	Contig14	Fnod0270	COG1321	34	0.005
Mn-dependent transcriptional regulator protein	K	Contig14	Fnod0638	COG1321	35	0.003
Mn-dependent transcriptional regulator protein	K	Contig14	Fnod1443	COG1321	41	5e-05
Mn-dependent transcriptional regulator protein	K	Contig14	Fnod1486	COG1321	35	0.002
Predicted transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains	K	Contig14	Fnod1156	COG1327	201	2e-53
Predicted transcriptional regulator protein containing the HTH domain	K	Contig14	Fnod1463	COG1386	90	1e-19
Predicted transcriptional regulator protein	K	Contig14	Fnod0116	COG3620	51	2e-07
Predicted transcriptional regulator protein	K	Contig14	Fnod0116	COG2524	62	9e-11
Predicted transcriptional regulator protein	K	Contig14	Fnod0150	COG1497	34	0.005
Predicted transcriptional regulator protein	K	Contig14	Fnod0429	COG1725	106	4e-25
Predicted transcriptional regulator protein	K	Contig14	Fnod0452	COG2345	40	4e-04
Predicted transcriptional regulator protein	K	Contig14	Fnod0541	COG1725	78	3e-16
Predicted transcriptional regulator protein	K	Contig14	Fnod0638	COG2378	37	8e-04
Predicted transcriptional regulator protein	K	Contig14	Fnod0657	COG3620	56	2e-09
Predicted transcriptional regulator protein	K	Contig14	Fnod0657	COG2524	104	1e-23
Predicted transcriptional regulator protein	K	Contig14	Fnod0771	COG0640	52	1e-08
Predicted transcriptional regulator protein	K	Contig14	Fnod0771	COG1777	38	1e-04
Predicted transcriptional regulator protein	K	Contig14	Fnod0793	COG2932	40	1e-04
Predicted transcriptional regulator protein	K	Contig14	Fnod0891	COG3620	75	3e-14
Predicted transcriptional regulator protein	K	Contig14	Fnod0891	COG2524	80	8e-16
Predicted transcriptional regulator protein	K	Contig14	Fnod0911	COG1497	34	0.008
Predicted transcriptional regulator protein	K	Contig14	Fnod0970	COG3620	46	2e-06
Predicted transcriptional regulator protein	K	Contig14	Fnod0970	COG2524	56	1e-09
Predicted transcriptional regulator protein	K	Contig14	Fnod1002	COG3620	41	2e-04
Predicted transcriptional regulator protein	K	Contig14	Fnod1002	COG2524	56	7e-09
Predicted transcriptional regulator protein	K	Contig14	Fnod1242	COG2524	36	0.005
Predicted transcriptional regulator protein	K	Contig14	Fnod1298	COG1497	32	0.009
Predicted transcriptional regulator protein	K	Contig14	Fnod1325	COG1396	50	7e-08
Predicted transcriptional regulator protein	K	Contig14	Fnod1325	COG3620	47	9e-07
Predicted transcriptional regulator protein	K	Contig14	Fnod1325	COG1476	47	7e-07
Predicted transcriptional regulator protein	K	Contig14	Fnod1448	COG1695	74	3e-15
Predicted transcriptional regulator protein	K	Contig14	Fnod1465	COG2524	35	0.004
Predicted transcriptional regulator protein	K	Contig14	Fnod1486	COG0640	66	1e-12
Predicted transcriptional regulator protein	K	Contig14	Fnod1486	COG3355	33	0.009
Predicted transcriptional regulator protein	K	Contig14	Fnod1486	COG2345	33	0.006
Predicted transcriptional regulator protein	K	Contig14	Fnod1523	COG2524	53	6e-08
Predicted transcriptional regulator protein	K	Contig14	Fnod1613	COG0640	64	3e-12
Predicted transcriptional regulator protein	K	Contig14	Fnod1613	COG1777	39	1e-04
Predicted transcriptional regulator protein	K	Contig14	Fnod1771	COG1959	104	3e-24
Putative transcriptional regulator protein	K	Contig14	Fnod1166	COG1521	192	2e-50
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig14	Fnod0011	COG3604	43	5e-05
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig14	Fnod0018	COG3604	357	1e-99
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig14	Fnod0159	COG3604	37	0.004
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig14	Fnod0364	COG3604	39	0.002
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig14	Fnod0589	COG3604	48	2e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod0018	COG3829	528	1.0e-151
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod0159	COG3829	40	4e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod0219	COG3829	45	1e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod0472	COG3829	41	3e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod0589	COG3829	48	2e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod0879	COG3829	47	6e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod1003	COG3829	38	0.001
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod1219	COG3829	43	4e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig14	Fnod1277	COG3829	48	4e-06
Transcriptional regulator	K	Contig14	Fnod0166	COG1309	69	3e-13
Transcriptional regulator	K	Contig14	Fnod0191	COG1309	62	4e-11
Transcriptional regulator	K	Contig14	Fnod0533	COG1309	62	7e-11
Transcriptional regulator	K	Contig14	Fnod0734	COG1414	36	0.002
Transcriptional regulator	K	Contig14	Fnod1208	COG1316	149	4e-37
Transcriptional regulator	K	Contig14	Fnod1298	COG1414	34	0.002
Transcriptional regulator	K	Contig14	Fnod1443	COG1414	41	5e-05
Transcriptional regulator	K	Contig14	Fnod1774	COG1316	144	2e-35
Transcriptional regulator of a riboflavin/FAD biosynthetic operon	K	Contig14	Fnod1443	COG1339	33	0.008
Transcriptional regulator of aromatic amino acids metabolism	K	Contig14	Fnod0018	COG3283	272	4e-74
Transcriptional regulator of heat shock gene	K	Contig14	Fnod1242	COG1420	181	7e-47
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod0063	COG1167	156	3e-39
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod0105	COG1167	333	1e-92
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod0174	COG1167	40	4e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod0217	COG1167	118	7e-28
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod0429	COG1167	78	2e-16
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod0541	COG1167	68	2e-13
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod0665	COG1167	36	0.005
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod0973	COG1167	148	5e-37
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod1182	COG1167	155	5e-39
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod1307	COG1167	43	3e-05
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig14	Fnod1371	COG1167	63	3e-11
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig14	Fnod0018	COG1221	284	9e-78
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig14	Fnod0152	COG1221	35	0.007
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig14	Fnod0159	COG1221	37	0.004
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig14	Fnod0310	COG1221	36	0.008
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig14	Fnod0364	COG1221	40	0.001
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig14	Fnod0589	COG1221	53	3e-08
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig14	Fnod0813	COG1221	36	0.003
Transcriptional regulators	K	Contig14	Fnod0150	COG1846	68	3e-13
Transcriptional regulators	K	Contig14	Fnod0150	COG1522	36	0.002
Transcriptional regulators	K	Contig14	Fnod0270	COG1846	61	3e-11
Transcriptional regulators	K	Contig14	Fnod0285	COG1609	292	3e-80
Transcriptional regulators	K	Contig14	Fnod0418	COG1609	327	6e-91
Transcriptional regulators	K	Contig14	Fnod0429	COG1802	46	6e-07
Transcriptional regulators	K	Contig14	Fnod0429	COG2188	73	4e-15
Transcriptional regulators	K	Contig14	Fnod0429	COG2186	55	2e-09
Transcriptional regulators	K	Contig14	Fnod0452	COG1846	36	0.005
Transcriptional regulators	K	Contig14	Fnod0541	COG1802	44	3e-06
Transcriptional regulators	K	Contig14	Fnod0541	COG2188	66	7e-13
Transcriptional regulators	K	Contig14	Fnod0541	COG2186	57	3e-10
Transcriptional regulators	K	Contig14	Fnod0838	COG1737	69	8e-13
Transcriptional regulators	K	Contig14	Fnod1443	COG1846	59	1e-10
Transcriptional regulators	K	Contig14	Fnod1443	COG1522	33	0.009
Transcriptional regulators	K	Contig14	Fnod1443	COG1737	35	0.002
Transcriptional regulators	K	Contig14	Fnod1559	COG1609	311	5e-86
Transcriptional regulators	K	Contig14	Fnod1587	COG1609	231	4e-62
Transcriptional regulators	K	Contig14	Fnod1601	COG1609	299	1e-82
Transcriptional regulators	K	Contig14	Fnod1666	COG1609	39	6e-04
Transcriptional regulators of sugar metabolism	K	Contig14	Fnod0532	COG1349	38	0.002
Transcriptional regulator/sugar kinase	K	Contig14	Fnod0088	COG1940	226	2e-60
Transcriptional regulator/sugar kinase	K	Contig14	Fnod0106	COG1940	41	2e-04
Transcriptional regulator/sugar kinase	K	Contig14	Fnod0409	COG1940	36	0.006
Transcriptional regulator/sugar kinase	K	Contig14	Fnod0452	COG1940	117	9e-28
Transcriptional regulator/sugar kinase	K	Contig14	Fnod1669	COG1940	149	2e-37

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcription-repair coupling factor (superfamily II helicase)	K	Contig14	Fnod0489	COG1197	146	4e-36
Transcription-repair coupling factor (superfamily II helicase)	K	Contig14	Fnod1019	COG1197	349	3e-97
Transcription-repair coupling factor (superfamily II helicase)	K	Contig14	Fnod1363	COG1197	45	2e-05
Transcription-repair coupling factor (superfamily II helicase)	K	Contig14	Fnod1579	COG1197	55	1e-08
Transcription-repair coupling factor (superfamily II helicase)	K	Contig14	Fnod1758	COG1197	745	0.0

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