Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss3269546	TSC-CSHL|TSC1375531		fwd/T	A/G	ccaaatgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacggcaacc	09/20/01	04/07/04	100	Genomic			unknown
ss4043896	SC_JCM|U85199.1_29520		fwd/T	A/G	ccaaatgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacggcaacc	09/26/01	10/10/03	100	Genomic			unknown
ss6149550	SC_JCM|NT_025892.9_2598498		fwd/T	A/G	ccaaatgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacggcaacc	01/10/03	10/10/03	113	Genomic			unknown
ss6897598	WI_SSAHASNP|NT_037845.1_2819355		fwd/T	A/G	ccaaatgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacggcaacc	02/12/03	10/10/03	113	Genomic			unknown
ss23798293	PERLEGEN|afd4493193		fwd/T	A/G	ccaaatgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacggcaacc	08/10/04	09/13/04	123	Genomic			unknown
ss43671363	ABI|hCV16075141		fwd/T	A/G	ccaaatgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacggcaacc	07/18/05	07/18/05	126	Genomic			unknown
ss65935684	AFFY|SNP_A-1702463		fwd/T	A/G	tgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacgg	10/26/06	10/26/06	127	Genomic			unknown
ss66260493	AFFY|SNP_A-4290532		fwd/T	A/G	tgatttctctctttgg	tatcaaggtctggtag	10/27/06	08/14/07	127	Genomic			unknown
ss76405648	AFFY|AFFY_6_1M_SNP_A-4290532		fwd/T	A/G	tgatttctctctttgg	tatcaaggtctggtag	08/28/07	08/30/07	129	Genomic			unknown
ss81892574	HGSV|Cor18956_SNV_20070510.chr14_21345892		fwd/T	A/G	ccaaatgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacggcaacc	11/30/07	12/01/07	130	Genomic			unknown
ss89873063	BCMHGSC_JDW|JWB-0745580		fwd/T	A/G	ccaaatgtggcatgtgatttctctctttgg	tatcaaggtctggtagaacaaacggcaacc	02/26/08	02/28/08	129	Genomic			unknown

Fasta sequence   (Legend)

 aaaaattttc ttttaaaagg ttgagggaaa agttgagagc agctttttca tattatttac
 ctgggccttc tataaaggcc agtaaatcct cccaaatggt ggggggcatt tccagtccac
 caaatgtggc atgtgatttc tctctttgg
 R
 tatcaaggtc tggtagaaca aacggcaacc acgcaatggc ctgctaacca ctccacctgt
 ccttgtgggg gctctgctca ccttctaggc ccttttaggc ctttgtccat catttctggc
 atttttggga ggaggtaagg tcttgtctaa ctgggacaaa gtggtcagcc cgggacccgc
 atctgtgcaa ctccatggca taatgaagtt cctgagcttg tgtctctagg cccaccttct
 tgggttctgc aaactactgc agccctcagc gccttctggc ggccgccatt cttcttcctc
 tgcgacatcc atttcctccc aaaggcacgg tgtcctccgc agctcggtga gggcttcgcc
 aaggcgcagc aggatttcta gatgttctaa agtgctttat agcccagcga ggtctgggcc
 cagagaggct gccgccatca gctcactgaa gtggggagag aaggaggttt gcAGGGCCCC
 AGCTCACCTG CCTCTCAGTG

GeneView

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss23798293	AFD_EUR_PANEL	European	48	IG	0.417	0.417	0.167	0.655	0.625	0.375
	AFD_AFR_PANEL	African American	46	IG	0.217	0.435	0.348	0.584	0.435	0.565
	AFD_CHN_PANEL	Asian	48	IG	0.208	0.333	0.458	0.200	0.375	0.625
ss3269546	AfAm	African American	12	IG	0.167	0.167	0.667	0.200	0.250	0.750
	Caucasian	European	24	IG	0.333	0.500	0.167	1.000	0.583	0.417
	Asian	Asian	12	IG	0.333	0.167	0.500	0.150	0.417	0.583
	CEPH	European	12	IG		0.333	0.667	0.655	0.167	0.833
	PDpanel	Global	48	IG	0.333	0.292	0.375	0.050	0.479	0.521
	HapMap-CEU	European	120	IG	0.383	0.500	0.117	0.584	0.633	0.367
	HapMap-HCB	Asian	90	IG	0.111	0.467	0.422	1.000	0.344	0.656
	HapMap-JPT	Asian	88	IG	0.182	0.455	0.364	0.752	0.409	0.591
	HapMap-YRI	Sub-Saharan African	120	IG	0.067	0.467	0.467	0.403	0.300	0.700
ss66260493	HapMap-CEU	European	118	GF	0.373	0.508	0.119		0.627	0.373
	HapMap-HCB	Asian	90	GF	0.111	0.467	0.422		0.344	0.656
	HapMap-JPT	Asian	90	GF	0.178	0.467	0.356		0.411	0.589
	HapMap-YRI	Sub-Saharan African	120	GF	0.050	0.483	0.467		0.292	0.708

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN