BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query                position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence             begin  end (left)    repeat   class/family  begin  end (left)  ID

  873   0.0  0.0  0.0  'E11E10_I10_09.ab1'    232  328    (0) +  (A)n     Simple_repeat     1   97    (0)      

Alignments:
873  0.00  0.00  0.00  'E11E10_I10_09.ab1'  232  328  (0)  (A)n#Simple_repeat  1  97  (83)  5

  'E11E10_I10_09.    232 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 281    
                                                                           
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 50

  'E11E10_I10_09.    282 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 328    
                                                                        
  (A)n#Simple_rep     51 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 97

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 97), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>'E11E10_I10_09.ab1'
TGTTGTGTTTTTTTCTCCCTTGACCTGAATATCTTTTTCGGGATTTTGGA
TTGTTTTGGGGCACTCTGTGTCTGTCTTCGTGGCTGGATTTCGTAGTGTT
TAGGGATTTTATTTTTCTGCTTGTTTTCATTATTGTTAACATGGTGCCCT
CTGATTGAAACGTAGTTGATATATTCTTATTAACTATTTGGATATCATTC
TTCATGTCAAGGGGTTTGATCCTTGCACCACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       328 bp
GC level:         26.22 %
bases masked:        97 bp ( 29.57 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           97 bp    29.57 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'E11E10_I10_09.ab1'
        (328 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 13 Sequences     : less than 13 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 3725 771 |===========================================================
   6310 2954 588 |=============================================
   3980 2366 458 |===================================
   2510 1908 478 |====================================
   1580 1430 364 |============================
   1000 1066 248 |===================
    631  818 171 |=============
    398  647 153 |===========
    251  494  91 |=======
    158  403  97 |=======
    100  306  84 |======
   63.1  222  68 |=====
   39.8  154  54 |====
   25.1  100  46 |===
   15.8   54  15 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 39  <<<<<<<<<<<<<<<<<
   10.0   39  15 |=
   6.31   24  10 |:
   3.98   14   3 |:
   2.51   11   1 |:
   1.58   10   2 |:
   1.00    8   6 |:
   0.63    2   0 |
   0.40    2   1 |:
   0.25    1   0 |
   0.16    1   0 |
   0.10    1   0 |
  0.063    1   0 |
  0.040    1   0 |
  0.025    1   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|10173518|dbj|BAB04622.1|(AP001510) L-arabinose tra... +3    55  0.023     2
gi|477115|pir||A48118major epidermal calcium-binding ... -1    57  0.31      2
gi|7508317|pir||T32398hypothetical protein T23F4.2 - ... -1    72  0.47      1
gi|480483|pir||S36954cytochrome-c oxidase (EC 1.9.3.1... +1    55  0.48      2
gi|4185590|gb|AAD09165.1|(L10850) cytochrome oxidase ... +1    55  0.48      2
gi|4309699|gb|AAD15483.1|(AC006266) hypothetical prot... -3    70  0.59      1
gi|1469645|gb|AAB05731.1|(U53655) gag polyprotein [Hu... -3    65  0.61      1
gi|2587503|gb|AAB83297.1|(AF024423) gag protein [Huma... -3    65  0.61      1
gi|7525007ref|NP_050105.1| NADH dehydrogenase subunit... +3    59  0.68      2
gi|1469302|gb|AAC50619.1|(U51038) nonmuscle myosin II... -1    63  0.79      1
gi|4493900|emb|CAB39009.1|(AL034558) predicted using ... -3    61  0.86      2
gi|7242795|emb|CAB77260.1|(AJ239108) NADH dehydrogena... +1    63  0.96      1
gi|11141541|gb|AAG31990.1|(AF274885) CD81 [Saguinus o... +1    65  0.97      1
gi|11466494ref|NP_038197.1| ATP synthase F0 subunit 6... +3    66  0.97      1
gi|9632846ref|NP_049731.1| orf vs.7 [Bacteriophage T4... -3    59  0.98      1
gi|9632268ref|NP_048668.1| a312aR [Paramecium bursari... +1    59  0.98      1
gi|4757944ref|NP_004347.1| CD81 antigen (target of an... +1    65  0.99      1
gi|549047|sp|P35762|CD81_MOUSECD81 ANTIGEN (26 KDA CE... +1    65  0.99      1
gi|6978639ref|NP_037219.1| CD81 antigen (target of an... +1    65  0.99      1
gi|11131665|sp|O97703|CD81_CERAECD81 ANTIGEN >gi|4206... +1    65  0.99      1
gi|7688357|emb|CAB89875.1|(AJ250197) CD81 protein [Sa... +1    65  0.99      1
gi|8574076|emb|CAB94774.1|(AJ251835) Tapa-1 protein [... +1    65  0.99      1
gi|12085017ref|NP_073419.1| 34L protein [Yaba-like di... -1    63  0.990     1
gi|15274|emb|CAA28221.1|(X04567) pot. alternative ORF... -3    59  0.997     1
gi|586163|sp|P38573|UPKB_BOVINUROPLAKIN IB (UPIB) >gi... +1    64  0.998     1
gi|7498512|pir||T20535hypothetical protein F07A5.2 - ... -1    65  0.998     1
gi|11440652ref|XP_006475.1| CD81 antigen (target of a... +1    65  0.998     1
gi|11545429|gb|AAG37840.1|AF295377_1(AF295377) Cd81 [... +1    63  0.9991    1
gi|6320282ref|NP_010362.1| putative cell surface glyc... -2    65  0.9992    1
gi|7517822|pir||E75159hypothetical protein PAB0285 - ... +3    64  0.9993    1
gi|2120506|pir||I40299variable outer membrane protein... -1    62  0.9996    1
gi|6969604|gb|AAF33835.1|(AF227315) OspA [Borrelia ga... -1    57  0.9996    1
gi|9625815ref|NP_040064.1| HCMVUL127 [human herpesvir... -1    58  0.9997    1
gi|6321990ref|NP_012066.1| Yhr196wp [Saccharomyces ce... -3    67  0.9998    1
gi|630442|pir||S43288MURF4 protein - Herpetomonas mus... +1    56  0.9998    1
gi|4493979|emb|CAB39038.1|(AL034559) hypothetical pro... -1    54  0.9999    3
gi|6225805|sp|P56716|ORP1_MOUSEOXYGEN-REGULATED PROTE... -1    69  0.9999    1
gi|7242825|emb|CAB77256.1|(AJ239106) NADH dehydrogena... +1    59  0.99993   1
gi|11467106ref|NP_054407.1| atp6 [Marchantia polymorp... +3    62  0.99995   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|10173518|dbj|BAB04622.1|  (AP001510) L-arabinose transport system (permease)
            [Bacillus halodurans]
            Length = 279

Frame  3 hits (HSPs):              _____   ________                       
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 279
                       0       50      100      150      200      250

  Plus Strand HSPs:

 Score = 55 (19.4 bits), Expect = 0.023, Sum P(2) = 0.023
 Identities = 14/43 (32%), Positives = 25/43 (58%), Frame = +3

Query:   102 RDFIFLLVFIIVNMVPSD*NVVDIFLLTIWISFFMSRGLILAP 230
             R+F FLLV II+ M+P +  ++ +F L I +    +   ++ P
Sbjct:   108 RNFFFLLVLIIL-MIPFEILMLPLFQLMIKLQLVNTYTAVILP 149

 Score = 50 (17.6 bits), Expect = 0.023, Sum P(2) = 0.023
 Identities = 8/23 (34%), Positives = 13/23 (56%), Frame = +3

Query:    30 YLFRDFGLFWGTLCLSSWLDFVV 98
             Y+F + GL+W     S W+  V+
Sbjct:    63 YIFTEAGLYWTWFGNSVWISIVI 85


 >gi|477115|pir||A48118  major epidermal calcium-binding protein profilaggrin -
            human (fragment)
            Length = 306

Frame -1 hits (HSPs):                                              ______ 
Frame -3 hits (HSPs):                               ___                   
Annotated Domains:             ______                                     
                        __________________________________________________
Database sequence:     |        |       |       |       |       |       | | 306
                       0       50     100     150     200     250     300
__________________

Annotated Domains:
   Entrez               domain: calmodulin repeat homology #labe 48..80
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 61..73
   PROSITE              S100_CABP: S-100/ICaBP type calcium bind 56..77
__________________


  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 0.37, Sum P(2) = 0.31
 Identities = 11/29 (37%), Positives = 16/29 (55%), Frame = -1

Query:   106 SLNTTKSSHEDRHRVPQNNPKSRKRYSGQ 20
             S    +S HE+  +VP   P++RKR   Q
Sbjct:   267 SSQVNRSRHENTSQVPLQEPRTRKRRGSQ 295

 Score = 37 (13.0 bits), Expect = 0.37, Sum P(2) = 0.31
 Identities = 7/15 (46%), Positives = 10/15 (66%), Frame = -3

Query:   152 RGHHVNNNENKQKNK 108
             + HH  N+  K+KNK
Sbjct:   174 KNHH--NSSKKEKNK 186


 >gi|7508317|pir||T32398  hypothetical protein T23F4.2 - Caenorhabditis elegans
            >gi|2429503|gb|AAB71034.1| (AF025466) T23F4.2 gene product
            [Caenorhabditis elegans]
            Length = 220

Frame -1 hits (HSPs):   _______________                                   
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 220
                       0          50        100        150         200

  Minus Strand HSPs:

 Score = 72 (25.3 bits), Expect = 0.63, P = 0.47
 Identities = 15/62 (24%), Positives = 28/62 (45%), Frame = -1

Query:   193 IQIVNKNISTTFQSEGTMLTIMKTSRKIKSLNTTKSSHEDRHRVPQNNPKSRKRYSGQGR 14
             I +VN    T      T   ++     ++    ++S++  RH   +  P  R  ++GQG+
Sbjct:     2 IGMVNVQCDTPLDYYATAPNLLSRDTSVRKRGDSESANASRHNSTKRTPSWRPLFTGQGK 61

Query:    13 KK 8
             KK
Sbjct:    62 KK 63


 >gi|480483|pir||S36954  cytochrome-c oxidase (EC 1.9.3.1) chain III -
            Herpetomonas megaseliae mitochondrion >gi|4185587|gb|AAD09164.1|
            (L10848) cytochrome oxidase subunit III [Herpetomonas megaseliae]
            Length = 288

Frame  3 hits (HSPs):                               ___                   
Frame  1 hits (HSPs):           ________                                  
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |        |        |       |        |        |      | 288
                       0       50      100     150      200      250
__________________

Annotated Domains:
   DOMO                 DM00101: CYTOCHROME-COXIDASECHAINIII     31..278
   PROSITE              PREPHENATE_DEHYDR_1: Prephenate dehydrat 233..255
__________________


  Plus Strand HSPs:

 Score = 55 (19.4 bits), Expect = 0.66, Sum P(2) = 0.48
 Identities = 18/49 (36%), Positives = 24/49 (48%), Frame = +1

Query:     1 CCVFFSLDLNIFFGILDCFGALCVCLRGWIS*CLGILFFCLFSLLLTWC 147
             C VFF      FFG+L C   L +C   ++    GI  FC F  +L +C
Sbjct:    49 CFVFF------FFGLLFCI-LLLLCDL-FVDFLRGIFDFCNFLRVLQYC 89

 Score = 36 (12.7 bits), Expect = 0.66, Sum P(2) = 0.48
 Identities = 5/13 (38%), Positives = 8/13 (61%), Frame = +3

Query:   168 DIFLLTIWISFFM 206
             + FL  +W  FF+
Sbjct:   165 NFFLFCVWFRFFV 177


 >gi|4185590|gb|AAD09165.1|  (L10850) cytochrome oxidase subunit III
            [Herpetomonas muscarum]
            Length = 288

Frame  3 hits (HSPs):                               ___                   
Frame  1 hits (HSPs):           ________                                  
                        __________________________________________________
Database sequence:     |        |        |       |        |        |      | 288
                       0       50      100     150      200      250

  Plus Strand HSPs:

 Score = 55 (19.4 bits), Expect = 0.66, Sum P(2) = 0.48
 Identities = 18/49 (36%), Positives = 24/49 (48%), Frame = +1

Query:     1 CCVFFSLDLNIFFGILDCFGALCVCLRGWIS*CLGILFFCLFSLLLTWC 147
             C VFF      FFG+L C   L +C   ++    GI  FC F  +L +C
Sbjct:    49 CFVFF------FFGLLFCI-LLLLCDL-FVDFLRGIFDFCNFLRVLQYC 89

 Score = 36 (12.7 bits), Expect = 0.66, Sum P(2) = 0.48
 Identities = 5/13 (38%), Positives = 8/13 (61%), Frame = +3

Query:   168 DIFLLTIWISFFM 206
             + FL  +W  FF+
Sbjct:   165 NFFLFCVWFRFFV 177


 >gi|4309699|gb|AAD15483.1|  (AC006266) hypothetical protein [Arabidopsis
            thaliana] >gi|7267436|emb|CAB77948.1| (AL161508) hypothetical
            protein [Arabidopsis thaliana]
            Length = 201

Frame -3 hits (HSPs):   ___________                                       
                        __________________________________________________
Database sequence:     |            |           |            |           || 201
                       0           50         100          150         200

  Minus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 0.90, P = 0.59
 Identities = 14/41 (34%), Positives = 23/41 (56%), Frame = -3

Query:   152 RGHH-VNNNENKQKNKIPKHYEIQPRRQTQSAPKQSKIPKK 33
             RGHH +NN+E  +K +IPK  + +   +     ++ K  KK
Sbjct:     4 RGHHSINNDEETEKQEIPKQGQEEKHEEEGKEEEEGKEEKK 44


 >gi|1469645|gb|AAB05731.1|  (U53655) gag polyprotein [Human immunodeficiency
            virus type 1]
            Length = 109

Frame -3 hits (HSPs):                      ________________________       
                        __________________________________________________
Database sequence:     |        |        |         |        |        |    | 109
                       0       20       40        60       80      100

  Minus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 0.95, P = 0.61
 Identities = 17/51 (33%), Positives = 27/51 (52%), Frame = -3

Query:   149 GHHVNNNENKQKN---KIPKHYEIQPRRQTQSAPKQSKIPKKIFRSREKKT 6
             GH + +   +Q N   KI   Y+ +PR   QS P+ +  P++ FR  E+ T
Sbjct:    43 GHQIKDCTERQANFLGKIWPSYKGRPRNFLQSRPEPTAPPEESFRFGEETT 93


 >gi|2587503|gb|AAB83297.1|  (AF024423) gag protein [Human immunodeficiency virus
            type 1]
            Length = 97

Frame -3 hits (HSPs):                ____________________________         
                        __________________________________________________
Database sequence:     |         |          |         |         |         | 97
                       0        20         40        60        80

  Minus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 0.95, P = 0.61
 Identities = 21/52 (40%), Positives = 30/52 (57%), Frame = -3

Query:   149 GHHVNNNEN-KQKN---KI-PKHYEIQPRRQTQSAPKQSKIPKKIFRSREKKT 6
             GH + +  N +Q N   KI P H E +PR   QS P+ +  P++ FR  E+KT
Sbjct:    28 GHQMKDCTNERQVNFLGKIWPSH-EGRPRNFLQSRPEPTAPPEESFRFGEEKT 79


 >gi|7525007  ref|NP_050105.1| NADH dehydrogenase subunit 5 [Dictyostelium
            discoideum] >gi|11254382|pir||T43784 NADH dehydrogenase
            (ubiquinone) (EC 1.6.5.3) chain 5 [similarity] - slime mold
            (Dictyostelium discoideum) mitochondrion
            >gi|4958910|dbj|BAA78087.1| (AB000109) NADH dehydrogenase subunit 5
            [Dictyostelium discoideum] >gi|5442404|gb|AAD43330.1|AF155828_1
            (AF155828) NADH dehydrogenase subunit 5 [Dictyostelium discoideum]
            Length = 670

Frame  3 hits (HSPs):               ____                         __       
                        __________________________________________________
Database sequence:     |           |          |          |          |     | 670
                       0         150        300        450        600

  Plus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 1.1, Sum P(2) = 0.68
 Identities = 15/37 (40%), Positives = 21/37 (56%), Frame = +3

Query:    36 FRDFGLFWGTLCLSSWLDFVVFRDFIFLLVFIIVNMV 146
             F DFGLF+G L     L F+VF+   F ++F I   +
Sbjct:   173 FGDFGLFFGIL-----LVFLVFKSVDFSVIFTIAPFI 204

 Score = 38 (13.4 bits), Expect = 1.1, Sum P(2) = 0.68
 Identities = 8/19 (42%), Positives = 11/19 (57%), Frame = +3

Query:   174 FLLTIWISFFMSRGLILAP 230
             F +  W   F+SR LI+ P
Sbjct:   559 FFVKKWYFDFLSRVLIVVP 577


 >gi|1469302|gb|AAC50619.1|  (U51038) nonmuscle myosin II heavy chain-B [Homo
            sapiens]
            Length = 50

Frame -1 hits (HSPs):             ____________________________________    
                        __________________________________________________
Database sequence:     |                   |                   |          | 50
                       0                  20                  40

  Minus Strand HSPs:

 Score = 63 (22.2 bits), Expect = 1.6, P = 0.79
 Identities = 15/36 (41%), Positives = 20/36 (55%), Frame = -1

Query:   124 TSRKIKSLNTTKSSHEDR--HRVPQNNPKSRKRYSG 23
             T + I+ L    SSH+ R  H +PQ +PK  K  SG
Sbjct:    11 TKKVIQYLAHVASSHKGRKDHNIPQESPKPVKHQSG 46


 >gi|4493900|emb|CAB39009.1|  (AL034558) predicted using hexExon; MAL3P2.22
            (PFC0265c), Hypothetical protein, len: 637 aa [Plasmodium
            falciparum]
            Length = 636

Frame -1 hits (HSPs):                                ____                 
Frame -3 hits (HSPs):                 ___                                 
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 636
                       0         150         300         450         600

  Minus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 2.0, Sum P(2) = 0.86
 Identities = 13/25 (52%), Positives = 15/25 (60%), Frame = -3

Query:   167 NYVSIRGHHVNNNENKQKNKIPKHY 93
             N +SI   H  NNE K+K KI  HY
Sbjct:   188 NNMSIY-EHAENNEKKKKQKIKNHY 211

 Score = 33 (11.6 bits), Expect = 2.0, Sum P(2) = 0.86
 Identities = 10/37 (27%), Positives = 16/37 (43%), Frame = -1

Query:   109 KSLNTTKSSHEDRHRVPQNNPKSRKRYSGQ-GRKKHN 2
             K L +  +S+       +N  K     SGQ G+  +N
Sbjct:   373 KFLKSLDNSYNVNSNYVENKIKKENMKSGQNGKDDYN 409


 >gi|7242795|emb|CAB77260.1|  (AJ239108) NADH dehydrogenase subunit 1 [Taenia
            asiatica]
            Length = 157

Frame  1 hits (HSPs):                                ___________________  
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 63 (22.2 bits), Expect = 3.3, P = 0.96
 Identities = 21/57 (36%), Positives = 27/57 (47%), Frame = +1

Query:     4 CVFFSLDLNIFFGILDCFGALCVC--------LRGWIS*CLGILFFCLFSLLLTWCPLIE 159
             C F S+     F  +  F ALC C        L GW+S    ++F CL  L +  C L E
Sbjct:    93 CAFGSISSEACFMCIIIFSALCYCSYSLVDFFLSGWLS---VVIFPCLLILYII-CILCE 148

Query:   160 T 162
             T
Sbjct:   149 T 149


 >gi|11141541|gb|AAG31990.1|  (AF274885) CD81 [Saguinus oedipus]
            Length = 211

Frame  1 hits (HSPs):                _________                            
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 211
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 3.5, P = 0.97
 Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL ILF C
Sbjct:    60 MFVGFLGCYGAIQESQCLLGTFFTCLVILFAC 91


 >gi|11466494  ref|NP_038197.1| ATP synthase F0 subunit 6 [Chrysodidymus
            synuroideus] >gi|7110491|gb|AAF36963.1|AF222718_37 (AF222718) ATP
            synthase F0 subunit 6 [Chrysodidymus synuroideus]
            Length = 254

Frame  3 hits (HSPs):                     ________                        
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 254
                       0        50       100       150       200       250

  Plus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 3.7, P = 0.97
 Identities = 13/38 (34%), Positives = 22/38 (57%), Frame = +3

Query:    93 VVFRDFIFLLVFIIVNMVPSD*NVVDIFLLTIWISFFM 206
             +VF  F+F+L   I+ ++P    V   F++T   SFF+
Sbjct:    93 IVFSVFLFILGLNIIGLIPYSFTVTSHFVMTFSFSFFL 130


 >gi|9632846  ref|NP_049731.1| orf vs.7 [Bacteriophage T4]
            >gi|731222|sp|P13317|Y06J_BPT4 HYPOTHETICAL 12.8 KD PROTEIN IN
            REGB-DENV INTERGENIC REGION >gi|15275|emb|CAA28222.1| (X04567) ORF
            63.4 (AA 1-109) [coliphage T4]
            >gi|5354470|gb|AAD42677.1|AF158101_264 (AF158101) orf vs.7
            [Bacteriophage T4]
            Length = 109

Frame -3 hits (HSPs):           _______________                           
                        __________________________________________________
Database sequence:     |        |        |         |        |        |    | 109
                       0       20       40        60       80      100

  Minus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 4.1, P = 0.98
 Identities = 13/33 (39%), Positives = 19/33 (57%), Frame = -3

Query:   116 KNKIPKHYEIQPRRQTQSA--PKQSKIPKKIFR 24
             KNK+  H+EI  +    S   PKQ K+ K +F+
Sbjct:    19 KNKLVNHFEILAKNNILSEFYPKQYKLQKGVFK 51


 >gi|9632268  ref|NP_048668.1| a312aR [Paramecium bursaria Chlorella virus 1]
            >gi|7461457|pir||T17811 hypothetical protein a312aR - Chlorella
            virus PBCV-1 >gi|2447210|gb|AAC97068.1| (U42580) a312aR [Paramecium
            bursaria Chlorella virus 1]
            Length = 70

Frame  1 hits (HSPs):             ____________________________            
                        __________________________________________________
Database sequence:     |             |             |              |       | 70
                       0            20            40             60

  Plus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 4.1, P = 0.98
 Identities = 16/39 (41%), Positives = 21/39 (53%), Frame = +1

Query:    31 IFFGILDCFGALCVCLRGWIS*CLGI-LFFCLFSLLLTWC 147
             +FF +  C   + VCLR     CL + LF CLF  L + C
Sbjct:    15 MFFSLGICLRVIEVCLRRAFV-CLFVCLFVCLFVCLFSSC 53


 >gi|4757944  ref|NP_004347.1| CD81 antigen (target of antiproliferative antibody
            1) [Homo sapiens] >gi|135303|sp|P18582|CD81_HUMAN CD81 ANTIGEN (26
            KDA CELL SURFACE PROTEIN TAPA-1) (TARGET OF THE ANTIPROLIFERATIVE
            ANTIBODY 1) >gi|105601|pir||A35649 cell surface protein TAPA-1 -
            human >gi|338678|gb|AAA36663.1| (M33680) 26-kDa cell surface
            protein TAPA-1 [Homo sapiens] >gi|4206173|gb|AAD11440.1| (AF116600)
            CD81 [Pan troglodytes]
            Length = 236

Frame  1 hits (HSPs):                  _______                            
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 4.2, P = 0.99
 Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL ILF C
Sbjct:    73 MFVGFLGCYGAIQESQCLLGTFFTCLVILFAC 104


 >gi|549047|sp|P35762|CD81_MOUSE  CD81 ANTIGEN (26 KDA CELL SURFACE PROTEIN
            TAPA-1) (TARGET OF THE ANTIPROLIFERATIVE ANTIBODY 1)
            >gi|346871|pir||A46472 cell surface protein TAPA-1 - mouse
            >gi|233253|gb|AAB19417.1| (S45012) integral membrane protein TAPA-1
            [mice, B cell lymphoma line 38C13, Peptide, 236 aa] [Mus sp.]
            Length = 236

Frame  1 hits (HSPs):                  _______                            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200
__________________

Annotated Domains:
   Entrez               Domain: CYTOPLASMIC (PROBABLE).          1..11
   Entrez               Transmembrane region: SIGNAL-ANCHOR (TYP 12..35
   Entrez               Domain: EXTRACELLULAR (PROBABLE).        36..57
   Entrez               Transmembrane region: POTENTIAL.         58..78
   Entrez               Domain: CYTOPLASMIC (PROBABLE).          79..89
   Entrez               Transmembrane region: POTENTIAL.         90..115
   Entrez               Domain: EXTRACELLULAR (PROBABLE).        116..201
   Entrez               Transmembrane region: POTENTIAL.         202..226
   Entrez               Domain: CYTOPLASMIC (PROBABLE).          227..236
   PFAM                 transmembrane4: Transmembrane 4 family   11..230
   PRINTS               TMFOUR1: Transmembrane four proteins mot 12..35
   PRINTS               TMFOUR2: Transmembrane four proteins mot 58..84
   PRINTS               TMFOUR3: Transmembrane four proteins mot 85..113
   PRINTS               TMFOUR4: Transmembrane four proteins mot 204..230
   PRODOM               PD000920: CD9(8) RDS(8) CD63(4)          11..229
   PROSITE              TM4: Transmembrane 4 family signature.   69..91
__________________


  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 4.2, P = 0.99
 Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL ILF C
Sbjct:    73 MFVGFLGCYGAIQESQCLLGTFFTCLVILFAC 104


 >gi|6978639  ref|NP_037219.1| CD81 antigen (target of antiproliferative antibody
            1) [Rattus norvegicus] >gi|11131474|sp|Q62745|CD81_RAT CD81 ANTIGEN
            (26 KDA CELL SURFACE PROTEIN TAPA-1) (TARGET OF THE
            ANTIPROLIFERATIVE ANTIBODY 1) >gi|1142642|gb|AAC53103.1| (U19894)
            target of the antiproliferative antibody [Rattus norvegicus]
            Length = 236

Frame  1 hits (HSPs):                  _______                            
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 4.2, P = 0.99
 Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL ILF C
Sbjct:    73 MFVGFLGCYGAIQESQCLLGTFFTCLVILFAC 104


 >gi|11131665|sp|O97703|CD81_CERAE  CD81 ANTIGEN >gi|4206171|gb|AAD11439.1|
            (AF116599) CD81 [Cercopithecus aethiops]
            Length = 236

Frame  1 hits (HSPs):                  _______                            
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 4.2, P = 0.99
 Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL ILF C
Sbjct:    73 MFVGFLGCYGAIQESQCLLGTFFTCLVILFAC 104


 >gi|7688357|emb|CAB89875.1|  (AJ250197) CD81 protein [Saguinus oedipus]
            Length = 236

Frame  1 hits (HSPs):                  _______                            
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 4.2, P = 0.99
 Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL ILF C
Sbjct:    73 MFVGFLGCYGAIQESQCLLGTFFTCLVILFAC 104


 >gi|8574076|emb|CAB94774.1|  (AJ251835) Tapa-1 protein [Mus musculus]
            Length = 236

Frame  1 hits (HSPs):                  _______                            
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 4.2, P = 0.99
 Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL ILF C
Sbjct:    73 MFVGFLGCYGAIQESQCLLGTFFTCLVILFAC 104


 >gi|12085017  ref|NP_073419.1| 34L protein [Yaba-like disease virus]
            >gi|12056193|emb|CAC21272.1| (AJ293568) 34L protein [Yaba-like
            disease virus]
            Length = 185

Frame -1 hits (HSPs):       __________________                            
                        __________________________________________________
Database sequence:     |             |            |             |         | 185
                       0            50          100           150

  Minus Strand HSPs:

 Score = 63 (22.2 bits), Expect = 4.6, P = 0.99
 Identities = 23/68 (33%), Positives = 32/68 (47%), Frame = -1

Query:   205 MKNDIQIVNKNISTTFQSEGTMLTIMKTSRKIKSLNTTKSSHEDRHR-VPQNNPKSRKRY 29
             +K ++  +N N  TT  S    L I K  +KI      K   ED  + VP N PK  K Y
Sbjct:    17 VKKEVLSLNTNDYTTAISLSNRLKINK--KKINQ-QLYKLQKEDTVKMVPSNPPKWFKNY 73

Query:    28 SGQGRKKHN 2
             +    +KH+
Sbjct:    74 NCDNGEKHD 82


 >gi|15274|emb|CAA28221.1|  (X04567) pot. alternative ORF 63.4 (AA 1-126)
            [coliphage T4]
            Length = 126

Frame -3 hits (HSPs):                ______________                       
                        __________________________________________________
Database sequence:     |                   |                   |          | 126
                       0                  50                 100

  Minus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 5.7, P = 1.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Frame = -3

Query:   116 KNKIPKHYEIQPRRQTQSA--PKQSKIPKKIFR 24
             KNK+  H+EI  +    S   PKQ K+ K +F+
Sbjct:    36 KNKLVNHFEILAKNNILSEFYPKQYKLQKGVFK 68


 >gi|586163|sp|P38573|UPKB_BOVIN  UROPLAKIN IB (UPIB) >gi|2136830|pir||I46081
            uroplakin Ib - bovine >gi|443785|emb|CAA82569.1| (Z29378) uroplakin
            Ib [Bos taurus]
            Length = 260

Frame  1 hits (HSPs):         ________                                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |         |        |         |        |  | 260
                       0        50       100      150       200      250
__________________

Annotated Domains:
   DOMO                 DM08651:                                 2..258
   Entrez               Domain: CYTOPLASMIC (PROBABLE).          2..12
   Entrez               Transmembrane region: SIGNAL-ANCHOR (TYP 13..38
   Entrez               Domain: EXTRACELLULAR (PROBABLE).        39..60
   Entrez               Transmembrane region: POTENTIAL.         61..81
   Entrez               Domain: CYTOPLASMIC (PROBABLE).          82..86
   Entrez               Transmembrane region: POTENTIAL.         87..107
   Entrez               Domain: EXTRACELLULAR (PROBABLE).        108..229
   Entrez               Transmembrane region: POTENTIAL.         230..250
   Entrez               Domain: CYTOPLASMIC (PROBABLE).          251..260
   PRODOM               PD000920: CD9(8) RDS(8) CD63(4)          13..251
__________________


  Plus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 6.3, P = 1.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Frame = +1

Query:     4 CVFFSLDLNIFFGILDCFGALCVCLRGWIS*CLGILFFCL 123
             C+FF  D N  + +L+      +    WI   +GI  FCL
Sbjct:    33 CIFFVSDQNSLYPLLEATNNDDIYAAAWIGMSVGICLFCL 72


 >gi|7498512|pir||T20535  hypothetical protein F07A5.2 - Caenorhabditis elegans
            >gi|3875467|emb|CAA96617.1| (Z72506) predicted using
            Genefinder~cDNA EST EMBL:AW057248 comes from this gene~cDNA EST
            EMBL:AW057367 comes from this gene~cDNA EST EMBL:AW057440 comes
            from this gene [Caenorhabditis elegans]
            Length = 310

Frame -1 hits (HSPs):        _________                                    
                        __________________________________________________
Database sequence:     |       |       |        |       |       |       | | 310
                       0      50     100      150     200     250     300

  Minus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 6.3, P = 1.0
 Identities = 19/53 (35%), Positives = 29/53 (54%), Frame = -1

Query:   166 TTFQSEGTMLTIMKTSRKIKSLNTTKSSHEDRHRVPQNNPKSRKR-YSGQGRKK 8
             +TF S GT  +  + SR    L+TT SS + R R+    P+S    +SG G ++
Sbjct:    33 STFVSTGTTPSSSRRSRLDSFLSTTSSS-KSRPRIKSKLPRSSSSGFSGTGSER 85


 >gi|11440652  ref|XP_006475.1| CD81 antigen (target of antiproliferative
            antibody 1) [Homo sapiens]
            Length = 314

Frame  1 hits (HSPs):                          ______                     
                        __________________________________________________
Database sequence:     |       |       |       |       |       |       |  | 314
                       0      50     100     150     200     250     300

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 6.4, P = 1.0
 Identities = 15/32 (46%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL ILF C
Sbjct:   151 MFVGFLGCYGAIQESQCLLGTFFTCLVILFAC 182


 >gi|11545429|gb|AAG37840.1|AF295377_1  (AF295377) Cd81 [Danio rerio]
            Length = 236

Frame  1 hits (HSPs):                  ________                           
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200

  Plus Strand HSPs:

 Score = 63 (22.2 bits), Expect = 7.0, P = 1.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Frame = +1

Query:    31 IFFGILDCFGAL--CVCLRGWIS*CLGILFFC 120
             +F G L C+GA+    CL G    CL +LF C
Sbjct:    75 MFVGFLGCYGAIQESQCLLGTFFACLVLLFAC 106


 >gi|6320282  ref|NP_010362.1| putative cell surface glycoprotein; Sed1p
            [Saccharomyces cerevisiae] >gi|417765|sp|Q01589|SED1_YEAST SED1
            PROTEIN PRECURSOR >gi|283234|pir||S28004 probable cell surface
            glycoprotein SED1 precursor - yeast  (Saccharomyces cerevisiae)
            >gi|4454|emb|CAA47314.1| (X66838) SED1 [Saccharomyces cerevisiae]
            >gi|558248|emb|CAA57604.1| (X82086) D4431 [Saccharomyces
            cerevisiae] >gi|577804|emb|CAA86799.1| (Z46796) Sed1p
            [Saccharomyces cerevisiae] >gi|1431543|emb|CAA98896.1| (Z74373) ORF
            YDR077w [Saccharomyces cerevisiae]
            Length = 338

Frame -2 hits (HSPs):                                      _______        
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Minus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 7.1, P = 1.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Frame = -2

Query:    99 TLRNPATKTDTECPKTIQN---PEKDIQVKGEKNTT 1
             T+  P T T T+CP TI+    PE  + V   K TT
Sbjct:   244 TVTEPTTLTITDCPCTIEKSEAPESSVPVTESKGTT 279


 >gi|7517822|pir||E75159  hypothetical protein PAB0285 - Pyrococcus abyssi
            (strain Orsay) >gi|5457866|emb|CAB49356.1| (AJ248284) hypothetical
            protein [Pyrococcus abyssi]
            Length = 287

Frame  3 hits (HSPs):           _____________                             
                        __________________________________________________
Database sequence:     |        |        |       |        |        |      | 287
                       0       50      100     150      200      250

  Plus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 7.3, P = 1.0
 Identities = 24/73 (32%), Positives = 41/73 (56%), Frame = +3

Query:     9 FFLP*PEYL--FRDFGLFWGTLC-LSSWLDFVVFRDFIFLLVFIIVNMVPSD*NVVDIFL 179
             F++P   YL  F D GLFW  +  LS  + F+V  D++FL    I+ +  ++  V    +
Sbjct:    47 FYIPLIIYLDLFPDKGLFWWIIVILSGIIGFLV-ADWLFLEGINIIGVSRANLLVTPHPI 105

Query:   180 LTIWIS-FFMSRGL 218
             LT+ ++ +F+ R L
Sbjct:   106 LTMVLAHYFLDRPL 119


 >gi|2120506|pir||I40299  variable outer membrane protein - Borrelia hermsii
            >gi|558319|gb|AAA59220.1| (L33901) variable outer membrane protein
            [Borrelia hermsii]
            Length = 215

Frame -1 hits (HSPs):          ____________                               
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200
__________________

Annotated Domains:
   DOMO                 DM01445: VARIABLEMAJOROUTERMEMBRANECHAIN 1..214
__________________


  Minus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 7.7, P = 1.0
 Identities = 16/52 (30%), Positives = 30/52 (57%), Frame = -1

Query:   157 QSEGTMLTIMKTSRKIKSLNTTKSSHEDRHRVPQNNPKSRKRYSGQGRKKHN 2
             +S+GT+L + K S+KIK  +   +S ++ H + ++  +  K     G+K HN
Sbjct:    33 KSDGTVLALAKISKKIKDASDFATSVKEVHTLVKSIDELAKAI---GKKIHN 81


 >gi|6969604|gb|AAF33835.1|  (AF227315) OspA [Borrelia garinii]
            Length = 117

Frame -1 hits (HSPs):                                _____________________
                        __________________________________________________
Database sequence:     |                    |                     |       | 117
                       0                   50                   100

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 7.9, P = 1.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Frame = -1

Query:   229 GARIKPLDMKNDIQIVNKNISTTFQSEGTMLTIMKTSRKIKSLNTT 92
             G R++  D+KND     K +   F  EGT+    KT+  +K    T
Sbjct:    71 GTRLEYTDIKNDGSGKAKEVLKDFTLEGTLAXDGKTTLTVKEGTVT 116


 >gi|9625815  ref|NP_040064.1| HCMVUL127 [human herpesvirus 5]
            >gi|137018|sp|P16771|ULC7_HCMVA HYPOTHETICAL PROTEIN UL127
            >gi|76533|pir||S09893 hypothetical protein UL127 - human
            cytomegalovirus (strain AD169) >gi|1780910|emb|CAA35329.1| (X17403)
            HCMVUL127 [human herpesvirus 5]
            Length = 131

Frame -1 hits (HSPs):                          ______________________     
                        __________________________________________________
Database sequence:     |                  |                  |            | 131
                       0                 50                100

  Minus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 8.2, P = 1.0
 Identities = 19/61 (31%), Positives = 27/61 (44%), Frame = -1

Query:   202 KN-DIQIVNKNISTTFQSEGTMLTIMKTSRKIKSLNTTKSSHEDRHRVPQNNPKSRKRYS 26
             KN DI     +I   F      ++I   S  + ++NTT + HE   R      KS+  Y 
Sbjct:    62 KNGDISYTETHIGDIFNMPYFQISIFPISPSLSAINTTIARHEFSRR-----QKSQNAYF 116

Query:    25 GQ 20
             GQ
Sbjct:   117 GQ 118


 >gi|6321990  ref|NP_012066.1| Yhr196wp [Saccharomyces cerevisiae]
            >gi|731765|sp|P38882|YHZ6_YEAST HYPOTHETICAL 65.3 KD PROTEIN IN
            EGD2-SUN1 INTERGENIC REGION >gi|626698|pir||S46692 hypothetical
            protein YHR196w - yeast (Saccharomyces cerevisiae)
            >gi|458944|gb|AAB68369.1| (U00030) Yhr196wp [Saccharomyces
            cerevisiae]
            Length = 575

Frame -3 hits (HSPs):                               ______                
                        __________________________________________________
Database sequence:     |            |             |            |          | 575
                       0          150           300          450

  Minus Strand HSPs:

 Score = 67 (23.6 bits), Expect = 8.5, P = 1.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Frame = -3

Query:   164 YVSIRGHHVNN-NENKQKNKIPKHYEIQPRRQTQSAPKQSKIPKKIFRS 21
             Y++I  +  NN +E  QK    K  E QP  Q +    ++KI KK+ +S
Sbjct:   334 YITINKNEKNNADEADQKKLEEKEEEAQPEVQHEKKETETKINKKVSKS 382


 >gi|630442|pir||S43288  MURF4 protein - Herpetomonas muscarum
            Length = 81

Frame  1 hits (HSPs):                              ______________________ 
Annotated Domains:                                  __________            
                        __________________________________________________
Database sequence:     |           |            |           |           | | 81
                       0          20           40          60          80
__________________

Annotated Domains:
   PROSITE              CRYSTALLIN_BETAGAMMA: Crystallins beta a 47..62
__________________


  Plus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 8.6, P = 1.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Frame = +1

Query:     4 CVFFSLDLNIFFGILDCFGALCVCLRGWIS*CLGILFFCLFSLLLTWC 147
             C+F   D N+F G+  CF  LCV    W       + F  +SL++ +C
Sbjct:    45 CLFVLFDFNLFVGL--CF-LLCV----WF------ILFNFYSLIVYYC 79


 >gi|4493979|emb|CAB39038.1|  (AL034559) hypothetical protein, PFC0965w
            [Plasmodium falciparum]
            Length = 2706

Frame -1 hits (HSPs):               _                                  __ 
Frame -3 hits (HSPs):                            _                    _   
                        __________________________________________________
Database sequence:     |         |        |        |        |         |   | 2706
                       0       500     1000     1500     2000      2500

  Minus Strand HSPs:

 Score = 54 (19.0 bits), Expect = 9.1, Sum P(3) = 1.0
 Identities = 12/39 (30%), Positives = 22/39 (56%), Frame = -1

Query:   121 SRKIKSLNTTKSSHEDRHRVPQNNPKSRKRYSGQGRKKH 5
             +R  ++   T+++  + +    NN KSRKR +   RKK+
Sbjct:  2597 NRARRTSQRTRNNRRNNNNNNNNNRKSRKRSTRTNRKKN 2635

 Score = 39 (13.7 bits), Expect = 9.1, Sum P(3) = 1.0
 Identities = 10/19 (52%), Positives = 14/19 (73%), Frame = -1

Query:   220 IKPLDMKNDIQIVNKNIST 164
             IK  D+ ND QI+ K+I+T
Sbjct:   653 IKFDDLNNDYQII-KSINT 670

 Score = 37 (13.0 bits), Expect = 9.1, Sum P(3) = 1.0
 Identities = 5/12 (41%), Positives = 9/12 (75%), Frame = -3

Query:   146 HHVNNNENKQKN 111
             +++NNN N+  N
Sbjct:  2491 NNINNNNNRNNN 2502

 Score = 37 (13.0 bits), Expect = 9.1, Sum P(3) = 1.0
 Identities = 6/14 (42%), Positives = 9/14 (64%), Frame = -3

Query:   149 GHHVNNNENKQKNK 108
             G++ NNN N   N+
Sbjct:  1380 GNNNNNNNNNNNNR 1393


 >gi|6225805|sp|P56716|ORP1_MOUSE  OXYGEN-REGULATED PROTEIN 1 (RETINITIS
            PIGMENTOSA RP1 PROTEIN HOMOLOG)
            >gi|5326900|gb|AAD42089.1|AF155141_1 (AF155141) oxygen-regulated
            protein 1 [Mus musculus]
            Length = 936

Frame -1 hits (HSPs):                ____                                 
                        __________________________________________________
Database sequence:     |       |       |       |       |        |       | | 936
                       0     150     300     450     600      750     900

  Minus Strand HSPs:

 Score = 69 (24.3 bits), Expect = 9.1, P = 1.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Frame = -1

Query:   169 STTFQSEGTMLTIMKTSRKIKSLNTTK-SSHEDRHRVPQNNPKSRKR-YSGQ 20
             S  F  +GTM  +MK   KIK   T K ++  +R  +  N+ K++K  Y G+
Sbjct:   257 SIVFNQDGTMTVVMKVRFKIKEEETVKWTTTVNRAGLSNNDEKNKKSSYPGK 308


 >gi|7242825|emb|CAB77256.1|  (AJ239106) NADH dehydrogenase subunit 1 [Taenia
            saginata]
            Length = 157

Frame  1 hits (HSPs):                                ___________________  
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 9.5, P = 1.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Frame = +1

Query:     4 CVFFSLDLNIFFGILDCFGALCVC----LRGWIS*CLGILFF-CLFSLLLTWCPLIET 162
             C F S+     F  +  F ALC C    +  ++S  L ++ F CL  L +  C L ET
Sbjct:    93 CAFGSISFEACFMCIIIFSALCYCSCNLVDFFLSDWLSVVIFPCLLFLYII-CVLCET 149


 >gi|11467106  ref|NP_054407.1| atp6 [Marchantia polymorpha]
            >gi|416673|sp|P26853|ATP6_MARPO ATP SYNTHASE A CHAIN (PROTEIN 6)
            >gi|282756|pir||S25965 H+-transporting ATP synthase (EC 3.6.1.34)
            protein 6 - liverwort (Marchantia polymorpha) mitochondrion
            >gi|786191|gb|AAC09404.1| (M68929) atp6 [Marchantia polymorpha]
            Length = 252

Frame  3 hits (HSPs):                    __________                       
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 252
                       0        50       100       150       200       250

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 9.9, P = 1.0
 Identities = 12/44 (27%), Positives = 25/44 (56%), Frame = +3

Query:    93 VVFRDFIFLLVFIIVNMVPSD*NVVDIFLLTIWISFFMSRGLIL 224
             +++  F FLL   ++ M+P    V   F++T+ +SF +  G+ +
Sbjct:    91 LIYVTFTFLLFCNLIGMIPYSFTVTSHFIITLGLSFSLFIGITI 134


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.89

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.354   0.165   0.611  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.368   0.170   0.655  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.363   0.169   0.713  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.310   0.125   0.338    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.364   0.163   0.564  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.339   0.146   0.494  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      108        76       10.  58 3  12 22  0.10    31
                                                    27  0.10    32
   +2      0      109        77       10.  58 3  12 22  0.10    31
                                                    27  0.11    32
   +1      0      109        77       10.  58 3  12 22  0.10    31
                                                    27  0.11    32
   -1      0      109        76       10.  58 3  12 23  0.11    31
                                                    27  0.10    32
   -2      0      109        77       10.  58 3  12 22  0.10    31
                                                    27  0.11    32
   -3      0      108        76       10.  58 3  12 22  0.10    31
                                                    27  0.10    32


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  39
  No. of states in DFA:  582 (57 KB)
  Total size of DFA:  126 KB (128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  87.15u 1.09s 88.24t  Elapsed: 00:00:16
  Total cpu time:  87.16u 1.14s 88.30t  Elapsed: 00:00:16
  Start:  Wed Jan 23 16:06:49 2002   End:  Wed Jan 23 16:07:05 2002


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000