R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7339715|dbj|BAA92920.1| (AP001539) EST AU057816(S21817) corresponds to a
region of the predicted gene.~Similar to Arabidopsis thaliana
chromosome IV BAC T19F06; unknown protein. (AC002343) [Oryza
sativa]
Length = 852
Frame 2 hits (HSPs): _
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 852
0 150 300 450 600 750
Plus Strand HSPs:
Score = 605 (213.0 bits), Expect = 7.0e-60, Sum P(2) = 7.0e-60
Identities = 106/142 (74%), Positives = 122/142 (85%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITE 183
AL EILEILTVVCE H LPLAQTWVPCK+RSVLAHGGG KKSC SFDG CMG+VCMS ++
Sbjct: 227 ALVEILEILTVVCEEHKLPLAQTWVPCKYRSVLAHGGGVKKSCLSFDGSCMGEVCMSTSD 286
Query: 184 VAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALM 363
VAF+VIDAH WGF +ACVEHHLQ+GQGV+G+AF+ CF +I+QFCK EYPLVHYA M
Sbjct: 287 VAFHVIDAHMWGFRDACVEHHLQKGQGVSGKAFIYRRPCFSKDISQFCKLEYPLVHYARM 346
Query: 364 FGLTSCFAVCLQSSHTGNDDYV 429
FGL CFA+CLQS +TG+DDY+
Sbjct: 347 FGLAGCFAICLQSMYTGDDDYI 368
Score = 36 (12.7 bits), Expect = 7.0e-60, Sum P(2) = 7.0e-60
Identities = 5/8 (62%), Positives = 8/8 (100%), Frame = +2
Query: 431 HTGNDDYV 454
+TG+DDY+
Sbjct: 361 YTGDDDYI 368
>gi|6633813|gb|AAF19672.1|AC009519_6 (AC009519) F1N19.10 [Arabidopsis thaliana]
Length = 847
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 847
0 150 300 450 600 750
Plus Strand HSPs:
Score = 621 (218.6 bits), Expect = 1.2e-59, P = 1.2e-59
Identities = 108/142 (76%), Positives = 127/142 (89%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITE 183
ALAEILEILTVVCET+ LPLAQTWVPC+HRSVLA GGG KKSCSSFDG CMG+VCMS ++
Sbjct: 289 ALAEILEILTVVCETYKLPLAQTWVPCRHRSVLAFGGGFKKSCSSFDGSCMGKVCMSTSD 348
Query: 184 VAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALM 363
+A YV+DAH WGF +AC EHHLQ+GQGVAGRAF S N+CFC ++ +FCKT+YPLVHYA M
Sbjct: 349 LAVYVVDAHVWGFRDACAEHHLQKGQGVAGRAFQSGNLCFCRDVTRFCKTDYPLVHYARM 408
Query: 364 FGLTSCFAVCLQSSHTGNDDYV 429
F LTSCFAVCL+S++TG+D+YV
Sbjct: 409 FKLTSCFAVCLKSTYTGDDEYV 430
>gi|2262113|gb|AAB63621.1| (AC002343) unknown protein [Arabidopsis thaliana]
>gi|5668630|emb|CAB51645.1| (AL109619) putative protein
[Arabidopsis thaliana] >gi|7269251|emb|CAB81320.1| (AL161560)
putative protein [Arabidopsis thaliana]
Length = 959
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | | 959
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 611 (215.1 bits), Expect = 5.2e-58, P = 5.2e-58
Identities = 105/142 (73%), Positives = 127/142 (89%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITE 183
ALAEILE+LTVVCETH+LPLAQTWVPC+H SVLA+GGG KK+C+SFDG CMGQ+CMS T+
Sbjct: 325 ALAEILEVLTVVCETHNLPLAQTWVPCQHGSVLANGGGLKKNCTSFDGSCMGQICMSTTD 384
Query: 184 VAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALM 363
+A YV+DAH WGF +AC+EHHLQ+GQGVAGRAFL+ CFC +I +FCKT+YPLVHYALM
Sbjct: 385 MACYVVDAHVWGFRDACLEHHLQKGQGVAGRAFLNGGSCFCRDITKFCKTQYPLVHYALM 444
Query: 364 FGLTSCFAVCLQSSHTGNDDYV 429
F LT+CFA+ LQSS+TG+D Y+
Sbjct: 445 FKLTTCFAISLQSSYTGDDSYI 466
>gi|8778618|gb|AAF79626.1|AC027665_27 (AC027665) F5M15.4 [Arabidopsis thaliana]
>gi|8886926|gb|AAF80612.1|AC069251_5 (AC069251) F2D10.12
[Arabidopsis thaliana]
Length = 844
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 844
0 150 300 450 600 750
Plus Strand HSPs:
Score = 300 (105.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 64/142 (45%), Positives = 86/142 (60%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITE 183
AL EI +L CETH LPLAQTWV C+ ++ K C D + C+S +
Sbjct: 285 ALPEIRNLLRCACETHKLPLAQTWVSCQQQN--------KSGCRHNDENYIH--CVSTID 334
Query: 184 VAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALM 363
A YV D FHEAC EHHL +GQGVAG+AFL++ CF +++ + K+EYPL H+A M
Sbjct: 335 DACYVGDPTVREFHEACSEHHLLKGQGVAGQAFLTNGPCFSSDVSNYKKSEYPLSHHANM 394
Query: 364 FGLTSCFAVCLQSSHTGNDDYV 429
+GL A+ L+ HTG+ D+V
Sbjct: 395 YGLHGAVAIRLRCIHTGSADFV 416
>gi|6554484|gb|AAF16666.1|AC012394_15 (AC012394) hypothetical protein;
65318-62644 [Arabidopsis thaliana]
Length = 808
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 808
0 150 300 450 600 750
Plus Strand HSPs:
Score = 296 (104.2 bits), Expect = 3.9e-24, P = 3.9e-24
Identities = 65/142 (45%), Positives = 83/142 (58%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITE 183
AL EI +L CETH LPLAQTWV C +S K C D + C+S +
Sbjct: 290 ALPEIRNLLRCACETHKLPLAQTWVSCLKQS--------KTGCRHNDENYIH--CVSTID 339
Query: 184 VAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALM 363
A YV D FHEAC EHHL +GQGV G AFL++ CF +++ + K+EYPL H+A M
Sbjct: 340 DACYVGDPTVREFHEACSEHHLLKGQGVVGEAFLTNGPCFSSDVSSYKKSEYPLSHHATM 399
Query: 364 FGLTSCFAVCLQSSHTGNDDYV 429
FGL A+ L+ HTG+ D+V
Sbjct: 400 FGLHGTVAIRLRCIHTGSVDFV 421
>gi|6448579|emb|CAB61243.1| (AJ239041) nodule inception protein [Lotus
japonicus] >gi|6453569|emb|CAB61338.1| (AJ238956) nodule inception
protein [Lotus japonicus]
Length = 878
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 878
0 150 300 450 600 750
Plus Strand HSPs:
Score = 274 (96.5 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 62/142 (43%), Positives = 84/142 (59%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITE 183
A+ EI+E++T VC+TH+LPLA TW PC + G K C M C+S +
Sbjct: 257 AVNEIIEVMTSVCKTHNLPLALTWAPC-----IQQG---KCGCGVSSENYMW--CVSTVD 306
Query: 184 VAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALM 363
A +V D GF EAC E+HL +GQG+ G AF + CF +I F K EYPL H+A M
Sbjct: 307 SACFVGDLDILGFQEACSEYHLFRGQGIVGTAFTTSKPCFAIDITAFSKAEYPLAHHANM 366
Query: 364 FGLTSCFAVCLQSSHTGND-DYV 429
FGL + A+ L+S +TG+ D+V
Sbjct: 367 FGLHAAVAIPLRSVYTGSAADFV 389
>gi|2288997|gb|AAB64326.1| (AC002335) hypothetical protein [Arabidopsis
thaliana]
Length = 947
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | 947
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 263 (92.6 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 57/142 (40%), Positives = 87/142 (61%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPC-KHRSVLAHGGGHKKSCSSFDGCCMGQVCMSIT 180
ALAEI ++L VC H LPLA W+PC K +S+ G +KS + C+ +C I
Sbjct: 337 ALAEIQDVLRTVCHAHKLPLALAWIPCRKDQSIRVSG---QKSGEN----CI--LC--IE 385
Query: 181 EVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYAL 360
E A YV D GF AC+EH L++ +G+ G+AF+S+ F ++ + +EYP+V +A
Sbjct: 386 ETACYVNDMEMEGFVHACLEHCLREKEGIVGKAFISNQPFFSSDVKAYDISEYPIVQHAR 445
Query: 361 MFGLTSCFAVCLQSSHTGNDDYV 429
+GL + A+ L+S++TG DDY+
Sbjct: 446 KYGLNAAVAIKLRSTYTGEDDYI 468
>gi|11292473|pir||T49299 hypothetical protein T16L24.130 - Arabidopsis thaliana
>gi|6996294|emb|CAB75455.1| (AL138659) putative protein
[Arabidopsis thaliana]
Length = 894
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 894
0 150 300 450 600 750
Plus Strand HSPs:
Score = 258 (90.8 bits), Expect = 5.6e-20, P = 5.6e-20
Identities = 57/142 (40%), Positives = 83/142 (58%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITE 183
ALAEI ++L VC H LPLA W+PC + S A+ K + C + +C I E
Sbjct: 278 ALAEIRDVLRAVCYAHRLPLALAWIPCSY-SKGANDELVKVYGKNSKECSL--LC--IEE 332
Query: 184 VAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALM 363
+ YV D GF AC+EH+L++GQG+ G+A +S+ F ++ F EYPLV +A
Sbjct: 333 TSCYVNDMEMEGFVNACLEHYLREGQGIVGKALISNKPSFSSDVKTFDICEYPLVQHARK 392
Query: 364 FGLTSCFAVCLQSSHTGNDDYV 429
FGL + A L+S+ TG++DY+
Sbjct: 393 FGLNAAVATKLRSTFTGDNDYI 414
>gi|6598671|gb|AAD25144.2|AC007127_10 (AC007127) unknown protein [Arabidopsis
thaliana]
Length = 890
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 890
0 150 300 450 600 750
Plus Strand HSPs:
Score = 225 (79.2 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 52/142 (36%), Positives = 77/142 (54%), Frame = +1
Query: 4 ALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITE 183
AL EI + L +C ++ PLA +W PC + + G + S +F C +S +
Sbjct: 287 ALPEIKDFLATICRSYDFPLALSWAPCARQGKV----GSRHSDENFSEC------VSTID 336
Query: 184 VAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALM 363
A V D + F EAC EHHL QG+G+ G+AF + + F +A F KT YPL H+A +
Sbjct: 337 SACSVPDEQSKSFWEACSEHHLLQGEGIVGKAFEATKLFFVPEVATFSKTNYPLAHHAKI 396
Query: 364 FGLTSCFAVCLQSSHTGNDDYV 429
GL + AV L+S +G ++V
Sbjct: 397 SGLHAALAVPLKSK-SGLVEFV 417
>gi|7485949|pir||T05662 hypothetical protein F22I13.110 - Arabidopsis thaliana
>gi|4539342|emb|CAB37490.1| (AL035539) putative protein
[Arabidopsis thaliana] >gi|7270818|emb|CAB80499.1| (AL161593)
putative protein [Arabidopsis thaliana]
Length = 767
Frame 1 hits (HSPs): __ ________
__________________________________________________
Database sequence: | | | | | | | 767
0 150 300 450 600 750
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 35/75 (46%), Positives = 43/75 (57%), Frame = +1
Query: 166 CMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPL 345
C+S A Y D + F AC EHHL G+G+AGRAF + CF ++A F K YPL
Sbjct: 327 CLSALISASYAADHGSRCFLAACSEHHLLGGEGIAGRAFATKKQCFATDVAIFSKWSYPL 386
Query: 346 VHYALMFGLTSCFAV 390
HYA MF L + AV
Sbjct: 387 SHYAKMFDLHAALAV 401
Score = 65 (22.9 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 11/21 (52%), Positives = 14/21 (66%), Frame = +1
Query: 13 EILEILTVVCETHSLPLAQTW 75
E+ IL +C +H LPLA TW
Sbjct: 299 EVASILQGICSSHGLPLAVTW 319
Score = 36 (12.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 7/12 (58%), Positives = 8/12 (66%), Frame = +1
Query: 61 LAQTWVPCKHRS 96
L Q WVP + RS
Sbjct: 135 LIQLWVPVETRS 146
>gi|7486018|pir||T06130 hypothetical protein F23E12.170 - Arabidopsis thaliana
>gi|3080423|emb|CAA18742.1| (AL022604) putative protein
[Arabidopsis thaliana] >gi|7270479|emb|CAB80244.1| (AL161587)
putative protein [Arabidopsis thaliana]
Length = 1031
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | 1031
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 204 (71.8 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 46/130 (35%), Positives = 68/130 (52%), Frame = +1
Query: 40 CETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWG 219
C + LPLA TW PC + + G + S +F C +S + A V D +
Sbjct: 358 CRVYDLPLALTWAPCARQGKV----GSRHSDENFSEC------VSTVDDACIVPDHQSRH 407
Query: 220 FHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALMFGLTSCFAVCLQ 399
F EAC EHHL QG+G+ G+AF + + F + F KT YPL H+A + GL + AV L+
Sbjct: 408 FLEACSEHHLLQGEGIVGKAFNATKLFFVPEVTTFSKTNYPLAHHAKISGLHAALAVPLK 467
Query: 400 SSHTGNDDYV 429
+ + ++V
Sbjct: 468 NKFNSSVEFV 477
>gi|5230699|gb|AAD40967.1| (AF082975) short neurotoxin precursor [Pseudonaja
textilis] >gi|8453076|gb|AAF75220.1|AF204969_1 (AF204969) alpha
neurotoxin [Pseudonaja textilis]
Length = 79
Frame 1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 6.7, P = 1.0
Identities = 14/47 (29%), Positives = 21/47 (44%), Frame = +1
Query: 31 TVVCETHSLPLAQTWVPCKH-RSVLAHGGGHKKSCSSFDGCCMGQVC 168
TVVC+ H + ++P H ++LA G G CC +C
Sbjct: 31 TVVCKPHETICYEYFIPATHGNAILARGCGTSCPGGIRPVCCRTDLC 77
>gi|8920234|emb|CAB96176.1| (AL360256) DKFZp434C131.1 hypothetical protein
[Homo sapiens]
Length = 53
Frame -2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 53
0 20 40
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 6.7, P = 1.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Frame = -2
Query: 121 YDHRHVLRHSDAYMEPMFVPEANYEFHTQL 32
+D +HVLR S YM P V + Y+ L
Sbjct: 6 WDEKHVLRGSPLYMAPEMVCQRQYDARVDL 35
>gi|12247174|gb|AAG49765.1|AF249122_1 (AF249122) rhodopsin [Indirana sp. 1]
Length = 105
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 6.7, P = 1.0
Identities = 15/36 (41%), Positives = 19/36 (52%), Frame = +1
Query: 277 AFLSHNMCFCGNIAQFCKTEYPLVHYALMFGLTSCF 384
AF +H M CG FC T Y +H +FG T C+
Sbjct: 73 AFANHFMILCG----FCITLYTSLHGYFIFGQTGCY 104
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.363 0.157 0.646
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.160 0.612
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.335 0.143 0.505
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.355 0.151 0.576
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.334 0.141 0.473
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.354 0.152 0.567
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
+2 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
+1 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
-1 0 151 151 10. 74 3 12 22 0.093 34
30 0.12 36
-2 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
-3 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 14
No. of states in DFA: 592 (58 KB)
Total size of DFA: 218 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 155.62u 0.88s 156.50t Elapsed: 00:00:26
Total cpu time: 155.65u 0.93s 156.58t Elapsed: 00:00:26
Start: Sat Feb 2 11:00:11 2002 End: Sat Feb 2 11:00:37 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000