Reference SNP(refSNP) Cluster Report: rs567601

Reference SNP(refSNP) Cluster Report: rs567601

refSNP ID: rs567601
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	83/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_001013845.1:c.-162-25C>G
NT_011726.13:g.20318G>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss738845 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs567601 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss738845	SC_JCM\|U66083.1_39002		fwd/T	C/G	ggacagctagaggaaggcacaggcaggata	catgtggtcagtgctatgacagaggtcacc	07/27/00	10/10/03	83	Genomic			unknown

Fasta sequence (Legend)

 GACCTTCCCC CCGTGTCTCT CAGGTGGCCT AAATCGCACT GACCTTGATG GTCTGCTGCT
 TCCGTCTGTC ACTGATGTCG AGCACCACAG CAGGCCCAAG GGAAGGGGCT AGGATTCGGC
 TGACTCAGGT CCATCCCATG GAGTCTTTGG GGCGGTCCGG AGTAGGGCGG GGACAGCTAG
 AGGAAGGCAC AGGCAGGATA
 S
 CATGTGGTCA GTGCTATGAC AGAGGTCACC GAGCCCTAGG GCAACACAGA GGACAGAGGG
 CCCCCTCGGC CTAGCCAGAG CGGAGAGTCG GGGCTGGTGT TAGCCCTCTT CCAGCACAGA
 GGGACAGTCC CACGCTCTGC TTCTCTTCCC TTTCCCCTGC TGTGCCCTGC CAATACTCTC
 AGTGCCCTGG CCCTGCCGCC

GeneView

GeneView via analysis of contig annotation: CXorf40B chromosome X open reading frame 40B

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_011726->NM_001013845

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_011726->NM_001013845->NP_001013867	20318	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs567601 maps exactly once on NCBI human chromosome X

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
X	NW_001842412.2	100151	137580291	plus	G	alt_assembly_8	HuRef	HuRef	view	200
X	NT_011726.13	20318	148853038	plus	G	ref_assembly	reference	reference	view	200
X	NW_927727.1	2723670	148975607	minus	C	alt_assembly_1	Celera	Celera	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
U66083 AF011889

dbSNP Blast Analysis
GenBank HTGS Finished:
BX927209.6

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .