BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FN0608
(700 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19703943|ref|NP_603505.1| Exoribonuclease II [Fusobacter... 1254 0.0
gi|148324442|gb|EDK89692.1| ribonuclease R [Fusobacterium n... 1217 0.0
gi|34764100|ref|ZP_00144977.1| Exoribonuclease II [Fusobact... 1118 0.0
gi|118480167|ref|YP_897318.1| ribonuclease R [Bacillus thur... 457 e-126
gi|52081942|ref|YP_080733.1| ribonuclease R [Bacillus liche... 456 e-126
gi|89204994|ref|ZP_01183567.1| 3'-5' exoribonuclease, VacB ... 456 e-126
gi|42784278|ref|NP_981525.1| ribonuclease R [Bacillus cereu... 456 e-126
gi|52140440|ref|YP_086389.1| ribonuclease R (RNase R) [Baci... 455 e-126
gi|49481126|ref|YP_039117.1| ribonuclease R (RNase R) [Baci... 455 e-126
gi|89098803|ref|ZP_01171684.1| ribonuclease R [Bacillus sp.... 455 e-126
gi|47567335|ref|ZP_00238048.1| exoribonuclease, VacB/RNase ... 454 e-126
gi|30023166|ref|NP_834797.1| Exoribonuclease II [Bacillus c... 454 e-126
gi|30265133|ref|NP_847510.1| ribonuclease R [Bacillus anthr... 454 e-125
gi|153955985|ref|YP_001396750.1| Rnr [Clostridium kluyveri ... 453 e-125
gi|152977348|ref|YP_001376865.1| ribonuclease R [Bacillus c... 452 e-125
gi|148378235|ref|YP_001252776.1| ribonuclease R [Clostridiu... 451 e-125
gi|138896635|ref|YP_001127088.1| Ribonuclease R [Geobacillu... 451 e-125
gi|153939819|ref|YP_001389595.1| ribonuclease R [Clostridiu... 450 e-124
gi|154687491|ref|YP_001422652.1| Rnr [Bacillus amyloliquefa... 449 e-124
gi|28210140|ref|NP_781084.1| exoribonuclease II [Clostridiu... 448 e-124
gi|56421579|ref|YP_148897.1| ribonuclease R [Geobacillus ka... 447 e-123
gi|16080414|ref|NP_391241.1| ribonuclease R [Bacillus subti... 446 e-123
gi|15894003|ref|NP_347352.1| FUSION ribonuclease and riboso... 446 e-123
gi|56964768|ref|YP_176499.1| ribonuclease R [Bacillus claus... 444 e-123
gi|15616115|ref|NP_244420.1| ribonuclease R [Bacillus halod... 440 e-121
gi|118442907|ref|YP_877499.1| ribonuclease R [Clostridium n... 437 e-120
gi|46908622|ref|YP_015011.1| ribonuclease R, putative [List... 437 e-120
gi|20807463|ref|NP_622634.1| Exoribonuclease [Thermoanaerob... 436 e-120
gi|47096836|ref|ZP_00234417.1| ribonuclease R, putative [Li... 435 e-120
gi|16804487|ref|NP_465972.1| hypothetical protein lmo2449 [... 435 e-120
gi|116873813|ref|YP_850594.1| ribonuclease R, putative [Lis... 435 e-120
gi|153197245|ref|ZP_01941515.1| hypothetical protein LMRG_0... 435 e-120
gi|153175701|ref|ZP_01931005.1| hypothetical protein LMIG_0... 434 e-120
gi|51891477|ref|YP_074168.1| ribonulease R [Symbiobacterium... 433 e-119
gi|16801605|ref|NP_471873.1| hypothetical protein lin2543 [... 433 e-119
gi|150015522|ref|YP_001307776.1| ribonuclease R [Clostridiu... 432 e-119
gi|106893573|ref|ZP_01360698.1| 3'-5' exoribonuclease, VacB... 432 e-119
gi|23099883|ref|NP_693349.1| ribonulease R [Oceanobacillus ... 432 e-119
gi|146296343|ref|YP_001180114.1| ribonuclease R [Caldicellu... 431 e-119
gi|125972670|ref|YP_001036580.1| ribonuclease R [Clostridiu... 429 e-118
gi|153204022|ref|ZP_01944888.1| hypothetical protein LMSG_0... 429 e-118
gi|89211162|ref|ZP_01189538.1| 3'-5' exoribonuclease, VacB ... 429 e-118
gi|153855173|ref|ZP_01996357.1| hypothetical protein DORLON... 428 e-118
gi|153813799|ref|ZP_01966467.1| hypothetical protein RUMTOR... 427 e-117
gi|110803809|ref|YP_698614.1| ribonuclease R [Clostridium p... 426 e-117
gi|118725227|ref|ZP_01573870.1| ribonuclease R [Clostridium... 425 e-117
gi|110800238|ref|YP_695945.1| ribonuclease R [Clostridium p... 424 e-117
gi|27467483|ref|NP_764120.1| ribonuclease R [Staphylococcus... 424 e-116
gi|78044313|ref|YP_359161.1| ribonuclease R [Carboxydotherm... 423 e-116
gi|57866444|ref|YP_188043.1| exoribonuclease, VacB/RNase II... 423 e-116
gi|154503018|ref|ZP_02040078.1| hypothetical protein RUMGNA... 422 e-116
gi|18310278|ref|NP_562212.1| ribonuclease R [Clostridium pe... 422 e-116
gi|76796888|ref|ZP_00779237.1| 3'-5' exoribonuclease, VacB ... 422 e-116
gi|118744881|ref|ZP_01592867.1| ribonuclease R [Geobacter l... 421 e-115
gi|73663216|ref|YP_301997.1| exoribonuclease [Staphylococcu... 421 e-115
gi|114845546|ref|ZP_01455937.1| Ribonuclease R [Thermoanaer... 420 e-115
gi|57650122|ref|YP_185720.1| exoribonuclease, VacB/RNase II... 414 e-113
gi|68056142|ref|ZP_00540274.1| 3'-5' exoribonuclease, VacB ... 413 e-113
gi|82750488|ref|YP_416229.1| ribonuclease R [Staphylococcus... 413 e-113
gi|21282471|ref|NP_645559.1| ribonuclease R [Staphylococcus... 412 e-113
gi|70727106|ref|YP_254020.1| ribonuclease R [Staphylococcus... 412 e-113
gi|154484690|ref|ZP_02027138.1| hypothetical protein EUBVEN... 411 e-113
gi|15926457|ref|NP_373990.1| ribonuclease R [Staphylococcus... 410 e-112
gi|126654057|ref|ZP_01725884.1| ribonuclease R [Bacillus sp... 409 e-112
gi|114565845|ref|YP_752999.1| Exoribonuclease II [Syntropho... 408 e-112
gi|49483038|ref|YP_040262.1| putative ribonuclease R [Staph... 408 e-112
gi|150391304|ref|YP_001321353.1| ribonuclease R [Alkaliphil... 407 e-111
gi|145953657|ref|ZP_01802665.1| hypothetical protein CdifQ_... 406 e-111
gi|126700783|ref|YP_001089680.1| ribonuclease R [Clostridiu... 405 e-111
gi|156865771|gb|EDO59202.1| hypothetical protein CLOL250_00... 400 e-109
gi|110601044|ref|ZP_01389247.1| VacB and RNase II family 3'... 399 e-109
gi|148264740|ref|YP_001231446.1| ribonuclease R [Geobacter ... 393 e-107
gi|39996585|ref|NP_952536.1| ribonuclease R, putative [Geob... 392 e-107
gi|78222598|ref|YP_384345.1| 3'-5' exoribonuclease, VacB an... 391 e-107
gi|69247783|ref|ZP_00604488.1| 3'-5' exoribonuclease, VacB ... 386 e-105
gi|154248880|ref|YP_001409705.1| ribonuclease R [Fervidobac... 385 e-105
gi|83589142|ref|YP_429151.1| Ribonuclease R [Moorella therm... 385 e-105
gi|15643485|ref|NP_228531.1| vacB protein [Thermotoga marit... 385 e-105
gi|148269352|ref|YP_001243812.1| ribonuclease R [Thermotoga... 384 e-105
gi|29377102|ref|NP_816256.1| ribonuclease R [Enterococcus f... 382 e-104
gi|90962131|ref|YP_536047.1| Ribonuclease R 1 [Lactobacillu... 371 e-100
gi|116333316|ref|YP_794843.1| Exoribonuclease R [Lactobacil... 370 e-100
gi|42518802|ref|NP_964732.1| ribonuclease R [Lactobacillus ... 367 2e-99
gi|118587033|ref|ZP_01544464.1| ribonuclease R [Oenococcus ... 367 2e-99
gi|116491421|ref|YP_810965.1| Exoribonuclease R [Oenococcus... 367 2e-99
gi|77919746|ref|YP_357561.1| exoribonuclease RNase R [Pelob... 367 2e-99
gi|92090006|ref|ZP_01274919.1| 3'-5' exoribonuclease, VacB ... 366 3e-99
gi|145621752|ref|ZP_01777718.1| ribonuclease R [Petrotoga m... 365 6e-99
gi|150021389|ref|YP_001306743.1| ribonuclease R [Thermosiph... 365 6e-99
gi|148543630|ref|YP_001271000.1| ribonuclease R [Lactobacil... 364 1e-98
gi|110004071|emb|CAK98410.1| probable ribonuclease r protei... 363 2e-98
gi|146319045|ref|YP_001198757.1| Exoribonuclease R [Strepto... 362 4e-98
gi|104774567|ref|YP_619547.1| Exoribonuclease R [Lactobacil... 362 6e-98
gi|116514688|ref|YP_813594.1| Exoribonuclease R [Lactobacil... 360 2e-97
gi|81097425|ref|ZP_00875709.1| 3'-5' exoribonuclease, VacB ... 360 2e-97
gi|118579602|ref|YP_900852.1| ribonuclease R [Pelobacter pr... 359 3e-97
gi|58336785|ref|YP_193370.1| Ribonuclease R [Lactobacillus ... 359 4e-97
gi|154498393|ref|ZP_02036771.1| hypothetical protein BACCAP... 357 2e-96
gi|125624388|ref|YP_001032871.1| putative exoribonuclease R... 356 3e-96
gi|15672924|ref|NP_267098.1| ribonuclease [Lactococcus lact... 356 3e-96
gi|116511759|ref|YP_808975.1| Exoribonuclease R [Lactococcu... 356 3e-96
gi|156859113|gb|EDO52544.1| hypothetical protein BACUNI_041... 355 5e-96
gi|125718408|ref|YP_001035541.1| Exoribonuclease, VacB/Rnb ... 354 1e-95
gi|116494482|ref|YP_806216.1| Exoribonuclease R [Lactobacil... 353 2e-95
gi|116629932|ref|YP_815104.1| Exoribonuclease R [Lactobacil... 353 2e-95
gi|119897230|ref|YP_932443.1| exoribonuclease II [Azoarcus ... 353 3e-95
gi|157074861|gb|ABV09544.1| ribonuclease R [Streptococcus g... 353 3e-95
gi|154706980|ref|YP_001424555.1| ribonuclease R [Coxiella b... 352 4e-95
gi|29654398|ref|NP_820090.1| ribonuclease R [Coxiella burne... 351 8e-95
gi|149019567|ref|ZP_01834886.1| preprotein translocase subu... 351 1e-94
gi|15902922|ref|NP_358472.1| Exoribonuclease R [Streptococc... 351 1e-94
gi|153208459|ref|ZP_01946762.1| ribonuclease R [Coxiella bu... 351 1e-94
gi|95926461|ref|ZP_01309248.1| hypothetical protein CburR_0... 350 1e-94
gi|116624324|ref|YP_826480.1| ribonuclease R [Solibacter us... 350 2e-94
gi|148992889|ref|ZP_01822508.1| SsrA-binding protein [Strep... 350 2e-94
gi|149002527|ref|ZP_01827461.1| preprotein translocase subu... 350 3e-94
gi|116492266|ref|YP_804001.1| Exoribonuclease R [Pediococcu... 350 3e-94
gi|148988420|ref|ZP_01819867.1| preprotein translocase subu... 349 3e-94
gi|148998588|ref|ZP_01826028.1| SsrA-binding protein [Strep... 349 4e-94
gi|15900852|ref|NP_345456.1| exoribonuclease, VacB/Rnb fami... 349 5e-94
gi|86158854|ref|YP_465639.1| ribonuclease R [Anaeromyxobact... 348 5e-94
gi|81429021|ref|YP_396021.1| Exoribonuclease R, RNase II fa... 348 7e-94
gi|148984718|ref|ZP_01817986.1| preprotein translocase subu... 348 1e-93
gi|116618815|ref|YP_819186.1| Exoribonuclease R [Leuconosto... 347 1e-93
gi|82703074|ref|YP_412640.1| VacB and RNase II family 3'-5'... 347 1e-93
gi|149006346|ref|ZP_01830058.1| SsrA-binding protein [Strep... 347 2e-93
gi|149278034|ref|ZP_01884173.1| exoribonuclease II [Pedobac... 346 3e-93
gi|28377650|ref|NP_784542.1| ribonuclease R [Lactobacillus ... 346 3e-93
gi|75763004|ref|ZP_00742797.1| Exoribonuclease II [Bacillus... 346 3e-93
gi|56476098|ref|YP_157687.1| exoribonuclease RNase R (VacB ... 346 4e-93
gi|90416167|ref|ZP_01224099.1| ribonuclease R [marine gamma... 346 4e-93
gi|148358249|ref|YP_001249456.1| (exo)ribonuclease R [Legio... 345 6e-93
gi|126646883|ref|ZP_01719393.1| ribonuclease R [Algoriphagu... 345 7e-93
gi|110636884|ref|YP_677091.1| exoribonuclease II [Cytophaga... 344 1e-92
gi|54293054|ref|YP_125469.1| hypothetical protein lpl0091 [... 344 2e-92
gi|52840347|ref|YP_094146.1| (exo)ribonuclease R [Legionell... 344 2e-92
gi|54296088|ref|YP_122457.1| hypothetical protein lpp0106 [... 343 2e-92
gi|94970991|ref|YP_593039.1| Ribonuclease R [Acidobacteria ... 342 4e-92
gi|150003660|ref|YP_001298404.1| ribonuclease R [Bacteroide... 342 4e-92
gi|55822595|ref|YP_141036.1| exoribonuclease R [Streptococc... 342 5e-92
gi|55820704|ref|YP_139146.1| exoribonuclease R [Streptococc... 342 5e-92
gi|74316626|ref|YP_314366.1| exoribonuclease II [Thiobacill... 342 6e-92
gi|152979715|ref|YP_001345344.1| ribonuclease R [Actinobaci... 342 7e-92
gi|150009927|ref|YP_001304670.1| ribonuclease R [Parabacter... 341 1e-91
gi|24379988|ref|NP_721943.1| putative exoribonuclease R (RN... 340 2e-91
gi|156109782|gb|EDO11527.1| hypothetical protein BACOVA_027... 340 2e-91
gi|116627510|ref|YP_820129.1| Exoribonuclease R [Streptococ... 340 2e-91
gi|83815922|ref|YP_445650.1| ribonuclease R [Salinibacter r... 340 3e-91
gi|104783863|ref|YP_610361.1| exoribonuclease R [Pseudomona... 339 3e-91
gi|77411061|ref|ZP_00787415.1| exoribonuclease, VacB/Rnb fa... 339 3e-91
gi|30248367|ref|NP_840437.1| rnr; exoribonuclease RNAse R (... 339 4e-91
gi|95928777|ref|ZP_01311523.1| Ribonuclease R [Desulfuromon... 339 4e-91
gi|77405198|ref|ZP_00782296.1| exoribonuclease, VacB/Rnb fa... 339 5e-91
gi|108758783|ref|YP_632385.1| ribonuclease R [Myxococcus xa... 339 5e-91
gi|118139519|ref|YP_391756.2| Ribonuclease R [Thiomicrospir... 339 5e-91
gi|67157137|ref|ZP_00418499.1| VacB and RNase II family 3'-... 338 5e-91
gi|22537625|ref|NP_688476.1| exoribonuclease, VacB/Rnb fami... 338 6e-91
gi|146305678|ref|YP_001186143.1| ribonuclease R [Pseudomona... 338 7e-91
gi|71903068|ref|YP_279871.1| exoribonuclease II [Streptococ... 338 8e-91
gi|94268174|ref|ZP_01291109.1| 3'-5' exoribonuclease, VacB ... 338 8e-91
gi|90020701|ref|YP_526528.1| Exoribonuclease II [Saccharoph... 338 8e-91
gi|94988044|ref|YP_596145.1| exoribonuclease II [Streptococ... 338 1e-90
gi|21909888|ref|NP_664156.1| putative exoribonuclease R [St... 338 1e-90
gi|77166348|ref|YP_344873.1| Ribonuclease R [Nitrosococcus ... 338 1e-90
gi|70734079|ref|YP_257719.1| ribonuclease R [Pseudomonas fl... 337 1e-90
gi|28896413|ref|NP_802763.1| putative exoribonuclease R [St... 337 1e-90
gi|77408565|ref|ZP_00785301.1| exoribonuclease, VacB/Rnb fa... 337 1e-90
gi|86134792|ref|ZP_01053374.1| putative exoribonuclease [Te... 337 1e-90
gi|88801781|ref|ZP_01117309.1| ribonuclease R [Polaribacter... 337 1e-90
gi|25011590|ref|NP_735985.1| hypothetical protein gbs1548 [... 337 2e-90
gi|148826494|ref|YP_001291247.1| hypothetical protein CGSHi... 337 2e-90
gi|56808170|ref|ZP_00365951.1| COG0557: Exoribonuclease R [... 337 2e-90
gi|153807031|ref|ZP_01959699.1| hypothetical protein BACCAC... 337 2e-90
gi|146283973|ref|YP_001174126.1| ribonuclease R [Pseudomona... 336 3e-90
gi|19745621|ref|NP_606757.1| putative exoribonuclease R [St... 336 3e-90
gi|94993823|ref|YP_601921.1| Exoribonuclease II [Streptococ... 336 4e-90
gi|15674608|ref|NP_268782.1| putative exoribonuclease R [St... 335 4e-90
gi|119713687|gb|ABL97737.1| exoribonuclease [uncultured mar... 335 5e-90
gi|71910227|ref|YP_281777.1| exoribonuclease II [Streptococ... 335 5e-90
gi|68249455|ref|YP_248567.1| ribonuclease R [Haemophilus in... 335 5e-90
gi|139474267|ref|YP_001128983.1| putative exoribonuclease R... 335 5e-90
gi|145628237|ref|ZP_01784038.1| hypothetical protein CGSHi2... 335 6e-90
gi|29348486|ref|NP_811989.1| ribonuclease R [Bacteroides th... 335 6e-90
gi|94989924|ref|YP_598024.1| Exoribonuclease II [Streptococ... 335 6e-90
gi|114778676|ref|ZP_01453488.1| exoribonuclease II [Maripro... 335 7e-90
gi|46129169|ref|ZP_00155776.2| COG0557: Exoribonuclease R [... 335 8e-90
gi|145632230|ref|ZP_01787965.1| 23S rRNA (guanosine-2'-O-)-... 335 9e-90
gi|50913787|ref|YP_059759.1| Exoribonuclease II [Streptococ... 334 1e-89
gi|145637022|ref|ZP_01792686.1| hypothetical protein CGSHiH... 334 1e-89
gi|77456760|ref|YP_346265.1| 3'-5' exoribonuclease, VacB an... 334 1e-89
gi|59712921|ref|YP_205697.1| ribonuclease R [Vibrio fischer... 334 1e-89
gi|53715849|ref|YP_101841.1| ribonuclease R [Bacteroides fr... 334 2e-89
gi|145634716|ref|ZP_01790424.1| hypothetical protein CGSHiA... 333 2e-89
gi|106888097|ref|ZP_01355342.1| Exoribonuclease II [Clostri... 333 2e-89
gi|148828044|ref|YP_001292797.1| 23S rRNA (guanosine-2'-O-)... 333 3e-89
gi|91775979|ref|YP_545735.1| Ribonuclease R [Methylobacillu... 333 3e-89
gi|150026517|ref|YP_001297343.1| Ribonuclease R [Flavobacte... 333 3e-89
gi|120437635|ref|YP_863321.1| ribonuclease R [Gramella fors... 333 3e-89
gi|156972465|ref|YP_001443372.1| hypothetical protein VIBHA... 332 4e-89
gi|46133164|ref|ZP_00156716.2| COG0557: Exoribonuclease R [... 332 5e-89
gi|71733290|ref|YP_272874.1| ribonuclease R [Pseudomonas sy... 332 6e-89
gi|126662735|ref|ZP_01733734.1| ribonuclease R [Flavobacter... 331 8e-89
gi|152986148|ref|YP_001350985.1| ribonuclease R [Pseudomona... 331 9e-89
gi|91215345|ref|ZP_01252316.1| putative exoribonuclease [Ps... 331 9e-89
gi|38704239|ref|NP_313182.2| hypothetical protein ECs5155 [... 331 9e-89
gi|16272801|ref|NP_439021.1| virulence-associated protein [... 331 1e-88
gi|91227444|ref|ZP_01261808.1| ribonuclease R [Vibrio algin... 331 1e-88
gi|15804768|ref|NP_290809.1| putative enzyme [Escherichia c... 331 1e-88
gi|28872049|ref|NP_794668.1| ribonuclease R [Pseudomonas sy... 331 1e-88
gi|119471827|ref|ZP_01614160.1| RNase R, 3'-5' exoribonucle... 331 1e-88
gi|86148226|ref|ZP_01066523.1| Exoribonuclease R [Vibrio sp... 331 1e-88
gi|145629933|ref|ZP_01785715.1| 23S rRNA (guanosine-2'-O-)-... 330 2e-88
gi|116184713|ref|ZP_01474641.1| hypothetical protein VEx2w_... 330 2e-88
gi|88711638|ref|ZP_01105726.1| putative exoribonuclease [Fl... 330 2e-88
gi|153004313|ref|YP_001378638.1| ribonuclease R [Anaeromyxo... 330 2e-88
gi|15642594|ref|NP_232227.1| ribonuclease R [Vibrio cholera... 330 2e-88
gi|154490007|ref|ZP_02030268.1| hypothetical protein PARMER... 330 2e-88
gi|116190595|ref|ZP_01480332.1| hypothetical protein VchoM_... 330 2e-88
gi|83585083|ref|ZP_00923736.1| COG0557: Exoribonuclease R [... 330 2e-88
gi|156867626|gb|EDO60998.1| hypothetical protein CLOLEP_026... 330 3e-88
gi|121728988|ref|ZP_01681991.1| ribonuclease R [Vibrio chol... 330 3e-88
gi|71908585|ref|YP_286172.1| 3'-5' exoribonuclease, VacB an... 330 3e-88
gi|153839633|ref|ZP_01992300.1| ribonuclease R [Vibrio para... 330 3e-88
gi|27735249|sp|P30851|RNR_SHIFL Ribonuclease R (RNase R) (P... 329 3e-88
gi|537020|gb|AAA97075.1| vacB [Escherichia coli] 329 3e-88
gi|75212272|ref|ZP_00712312.1| COG0557: Exoribonuclease R [... 329 3e-88
gi|24115534|ref|NP_710044.1| putative enzyme [Shigella flex... 329 3e-88
gi|75188890|ref|ZP_00702157.1| COG0557: Exoribonuclease R [... 329 4e-88
gi|15600130|ref|NP_253624.1| exoribonuclease RNase R [Pseud... 328 6e-88
gi|26251071|ref|NP_757111.1| Ribonuclease R [Escherichia co... 328 6e-88
gi|116053086|ref|YP_793405.1| exoribonuclease RNase R [Pseu... 328 6e-88
gi|28899581|ref|NP_799186.1| ribonuclease R [Vibrio parahae... 328 6e-88
gi|82546580|ref|YP_410527.1| putative enzyme [Shigella boyd... 328 6e-88
gi|84323720|ref|ZP_00971788.1| COG0557: Exoribonuclease R [... 328 7e-88
gi|92113014|ref|YP_572942.1| Ribonuclease R [Chromohalobact... 328 7e-88
gi|74314664|ref|YP_313083.1| putative enzyme [Shigella sonn... 328 8e-88
gi|82779439|ref|YP_405788.1| putative enzyme [Shigella dyse... 328 9e-88
gi|56461043|ref|YP_156324.1| Exoribonuclease R [Idiomarina ... 328 9e-88
gi|26991559|ref|NP_746984.1| ribonuclease R [Pseudomonas pu... 328 1e-87
gi|75235875|ref|ZP_00720023.1| COG0557: Exoribonuclease R [... 328 1e-87
gi|84317621|ref|ZP_00966060.1| COG0557: Exoribonuclease R [... 328 1e-87
gi|126358428|ref|ZP_01715427.1| ribonuclease R [Pseudomonas... 327 1e-87
gi|148549962|ref|YP_001270064.1| ribonuclease R [Pseudomona... 327 1e-87
gi|91213728|ref|YP_543714.1| putative enzyme [Escherichia c... 327 2e-87
gi|118594776|ref|ZP_01552123.1| exoribonuclease II [Methylo... 327 2e-87
gi|88804559|ref|ZP_01120079.1| ribonuclease R [Robiginitale... 327 2e-87
gi|75179450|ref|ZP_00699454.1| COG0557: Exoribonuclease R [... 327 2e-87
gi|156932410|ref|YP_001436326.1| hypothetical protein ESA_0... 327 2e-87
gi|157085054|gb|ABV14732.1| hypothetical protein CKO_03653 ... 327 3e-87
gi|84393178|ref|ZP_00991942.1| Exoribonuclease R [Vibrio sp... 326 3e-87
gi|124267172|ref|YP_001021176.1| Exoribonuclease II [Methyl... 326 3e-87
gi|66043846|ref|YP_233687.1| 3'-5' exoribonuclease, VacB an... 326 3e-87
gi|85713281|ref|ZP_01044304.1| Exoribonuclease R [Idiomarin... 325 5e-87
gi|146298778|ref|YP_001193369.1| ribonuclease R [Flavobacte... 325 5e-87
gi|114331605|ref|YP_747827.1| ribonuclease R [Nitrosomonas ... 325 5e-87
gi|86131090|ref|ZP_01049689.1| putative exoribonuclease [Ce... 325 7e-87
gi|15603819|ref|NP_246893.1| VacB [Pasteurella multocida su... 324 1e-86
gi|88858912|ref|ZP_01133553.1| RNase R, 3'-5' exoribonuclea... 324 1e-86
gi|148981040|ref|ZP_01816260.1| Exoribonuclease R [Vibriona... 323 2e-86
gi|37681245|ref|NP_935854.1| exoribonuclease R [Vibrio vuln... 323 2e-86
gi|120611651|ref|YP_971329.1| ribonuclease R [Acidovorax av... 323 2e-86
gi|27364704|ref|NP_760232.1| Exoribonuclease R [Vibrio vuln... 323 3e-86
gi|118729265|ref|ZP_01577782.1| ribonuclease R [Delftia aci... 322 4e-86
gi|62182814|ref|YP_219231.1| putative exoribonuclease [Salm... 322 4e-86
gi|77361395|ref|YP_340970.1| RNase R, 3'-5' exoribonuclease... 322 6e-86
gi|119947020|ref|YP_944700.1| ribonuclease R [Psychromonas ... 322 7e-86
gi|119858815|ref|ZP_01640235.1| Ribonuclease R [Pseudomonas... 322 8e-86
gi|83856107|ref|ZP_00949636.1| putative exoribonuclease [Cr... 321 9e-86
gi|149192028|ref|ZP_01870255.1| Exoribonuclease R [Vibrio s... 321 1e-85
gi|121594906|ref|YP_986802.1| ribonuclease R [Acidovorax sp... 321 1e-85
gi|16763187|ref|NP_458804.1| ribonuclease R (RNase R) [Salm... 321 1e-85
gi|144575059|gb|AAZ43714.2| VACB-like ribonuclease II [Myco... 320 2e-85
gi|71894317|ref|YP_278425.1| VACB-like ribonuclease II [Myc... 320 2e-85
gi|152973050|ref|YP_001338196.1| RNase R [Klebsiella pneumo... 320 2e-85
gi|50122543|ref|YP_051710.1| ribonuclease R [Erwinia caroto... 320 2e-85
gi|51245758|ref|YP_065642.1| similar to ribonuclease R [Des... 320 3e-85
gi|52424528|ref|YP_087665.1| VacB protein [Mannheimia succi... 320 3e-85
gi|119474665|ref|ZP_01615018.1| ribonuclease R [marine gamm... 319 5e-85
gi|75242432|ref|ZP_00726194.1| COG0557: Exoribonuclease R [... 319 5e-85
gi|125624126|ref|YP_001032609.1| putative exoribonuclease R... 318 6e-85
gi|86144129|ref|ZP_01062466.1| putative exoribonuclease [Fl... 318 8e-85
gi|116512070|ref|YP_809286.1| Exoribonuclease R [Lactococcu... 318 9e-85
gi|83644547|ref|YP_432982.1| ribonuclease R [Hahella chejue... 318 1e-84
gi|91788562|ref|YP_549514.1| Ribonuclease R [Polaromonas sp... 318 1e-84
gi|121605337|ref|YP_982666.1| ribonuclease R [Polaromonas n... 317 1e-84
gi|94311030|ref|YP_584240.1| Ribonuclease R [Ralstonia meta... 317 1e-84
gi|71066655|ref|YP_265382.1| probable exoribonuclease RNase... 317 2e-84
gi|109900084|ref|YP_663339.1| ribonuclease R [Pseudoalterom... 317 2e-84
gi|93007244|ref|YP_581681.1| Ribonuclease R [Psychrobacter ... 316 3e-84
gi|114319741|ref|YP_741424.1| ribonuclease R [Alkalilimnico... 316 3e-84
gi|118051125|ref|ZP_01519674.1| ribonuclease R [Comamonas t... 316 3e-84
gi|46143701|ref|ZP_00134670.2| COG0557: Exoribonuclease R [... 315 5e-84
gi|145297769|ref|YP_001140610.1| ribonuclease R [Aeromonas ... 315 5e-84
gi|120555300|ref|YP_959651.1| ribonuclease R [Marinobacter ... 315 5e-84
gi|73541760|ref|YP_296280.1| 3'-5' exoribonuclease, VacB an... 315 9e-84
gi|15607021|ref|NP_214403.1| VacB protein (ribonuclease II ... 314 2e-83
gi|9107098|gb|AAF84789.1|AE004018_5 VacB protein [Xylella f... 314 2e-83
gi|34541350|ref|NP_905829.1| ribonuclease R [Porphyromonas ... 313 2e-83
gi|109897319|ref|YP_660574.1| ribonuclease R [Pseudoalterom... 313 2e-83
gi|54310421|ref|YP_131441.1| putative Exoribonuclease R [Ph... 313 2e-83
gi|119875574|ref|ZP_01642636.1| ribonuclease R [Stenotropho... 313 2e-83
gi|148654034|ref|YP_001281127.1| ribonuclease R [Psychrobac... 313 3e-83
gi|77747575|ref|NP_299269.2| VacB protein [Xylella fastidio... 313 3e-83
gi|117619104|ref|YP_855244.1| ribonuclease R [Aeromonas hyd... 313 4e-83
gi|146310027|ref|YP_001175101.1| VacB and RNase II family 3... 313 4e-83
gi|77973970|ref|ZP_00829513.1| COG0557: Exoribonuclease R [... 312 4e-83
gi|94676637|ref|YP_589004.1| ribonuclease R [Baumannia cica... 312 4e-83
gi|77977628|ref|ZP_00833072.1| COG0557: Exoribonuclease R [... 312 5e-83
gi|146329242|ref|YP_001209511.1| ribonuclease R [Dichelobac... 312 6e-83
gi|37528394|ref|NP_931739.1| ribonuclease R (RNase R) (VacB... 312 6e-83
gi|113460297|ref|YP_718357.1| exoribonuclease II (ribonucle... 312 7e-83
gi|156718758|ref|ZP_02060417.1| ribonuclease R [Hydrogenoba... 311 8e-83
gi|113868324|ref|YP_726813.1| Exoribonuclease R [Ralstonia ... 311 9e-83
gi|71275862|ref|ZP_00652146.1| 3'-5' exoribonuclease, VacB ... 311 1e-82
gi|90414466|ref|ZP_01222442.1| putative Exoribonuclease R [... 311 1e-82
gi|77956193|ref|ZP_00820319.1| COG0557: Exoribonuclease R [... 311 1e-82
gi|124003005|ref|ZP_01687856.1| ribonuclease R [Microscilla... 310 2e-82
gi|145600841|ref|YP_001164917.1| ribonuclease R [Yersinia p... 310 2e-82
gi|46156115|ref|ZP_00133381.2| COG0557: Exoribonuclease R [... 310 2e-82
gi|121608397|ref|YP_996204.1| ribonuclease R [Verminephroba... 310 2e-82
gi|16120715|ref|NP_404028.1| ribonuclease R [Yersinia pesti... 310 2e-82
gi|53803948|ref|YP_114408.1| ribonuclease R [Methylococcus ... 310 2e-82
gi|94493566|ref|ZP_01300769.1| hypothetical protein Rgryl_0... 310 3e-82
gi|17545947|ref|NP_519349.1| PROBABLE EXORIBONUCLEASE RNASE... 310 3e-82
gi|149907740|ref|ZP_01896487.1| putative Exoribonuclease R ... 310 3e-82
gi|89889727|ref|ZP_01201238.1| ribonuclease R [Flavobacteri... 310 3e-82
gi|126665196|ref|ZP_01736179.1| ribonuclease R [Marinobacte... 310 3e-82
gi|123440767|ref|YP_001004759.1| ribonuclease R [Yersinia e... 309 5e-82
gi|78066158|ref|YP_368927.1| 3'-5' exoribonuclease, VacB an... 309 5e-82
gi|153094064|gb|EDN74976.1| exoribonuclease R [Mannheimia h... 309 5e-82
gi|118757896|ref|ZP_01605627.1| ribonuclease R [Shewanella ... 309 5e-82
gi|83747960|ref|ZP_00944991.1| Ribonuclease R [Ralstonia so... 309 6e-82
gi|94984568|ref|YP_603932.1| Ribonuclease R [Deinococcus ge... 309 6e-82
gi|88704453|ref|ZP_01102167.1| ribonuclease R [gamma proteo... 308 6e-82
gi|42522037|ref|NP_967417.1| ribonuclease R [Bdellovibrio b... 308 7e-82
gi|134094503|ref|YP_001099578.1| RNase R, 3'-5' exoribonucl... 308 7e-82
gi|150383329|ref|ZP_01922158.1| ribonuclease R [Shewanella ... 308 7e-82
gi|71897947|ref|ZP_00680152.1| 3'-5' exoribonuclease, VacB ... 308 7e-82
gi|28056816|gb|AAO28688.1| truncated ribonuclease R [Xylell... 308 9e-82
gi|88794616|ref|ZP_01110323.1| ribonuclease R [Alteromonas ... 308 9e-82
gi|88810596|ref|ZP_01125853.1| ribonuclease R [Nitrococcus ... 308 1e-81
gi|124516385|gb|EAY57893.1| Exoribonuclease R [Leptospirill... 307 1e-81
gi|17646566|gb|AAL40978.1|AF447860_7 Rnr-like protein [Meth... 307 1e-81
gi|90581368|ref|ZP_01237164.1| putative Exoribonuclease R [... 307 2e-81
gi|89075976|ref|ZP_01162348.1| putative Exoribonuclease R [... 307 2e-81
gi|77961298|ref|ZP_00825139.1| COG0557: Exoribonuclease R [... 306 2e-81
gi|72080379|ref|YP_287437.1| VACB-like ribonuclease II [Myc... 306 3e-81
gi|77747666|ref|NP_779039.2| truncated ribonuclease R [Xyle... 306 3e-81
gi|144575249|gb|AAZ53414.2| VACB-like ribonuclease II [Myco... 306 4e-81
gi|121529901|ref|ZP_01662511.1| Exoribonuclease II [Ralston... 306 5e-81
gi|115525381|ref|YP_782292.1| ribonuclease R [Rhodopseudomo... 305 5e-81
gi|91200154|emb|CAJ73198.1| similar to ribonuclease R [Cand... 305 6e-81
gi|54020321|ref|YP_115553.1| hypothetical protein mhp038 [M... 305 6e-81
gi|71893392|ref|YP_278838.1| VACB-like ribonuclease II [Myc... 305 7e-81
gi|134295617|ref|YP_001119352.1| ribonuclease R [Burkholder... 305 7e-81
gi|149115217|ref|ZP_01841963.1| ribonuclease R [Shewanella ... 305 7e-81
gi|113947063|ref|ZP_01432729.1| Ribonuclease R [Shewanella ... 305 8e-81
gi|33151871|ref|NP_873224.1| ribonuclease r, virulence asso... 305 9e-81
gi|126175842|ref|YP_001051991.1| ribonuclease R [Shewanella... 305 9e-81
gi|107022619|ref|YP_620946.1| Ribonuclease R [Burkholderia ... 305 9e-81
gi|84357632|ref|ZP_00982446.1| COG0557: Exoribonuclease R [... 305 9e-81
gi|124547923|ref|ZP_01706730.1| ribonuclease R [Shewanella ... 305 9e-81
gi|144227433|gb|AAZ44127.2| VACB-like ribonuclease II [Myco... 305 1e-80
gi|148377474|ref|YP_001256350.1| Ribonuclease R (VacB-like ... 305 1e-80
gi|120600218|ref|YP_964792.1| ribonuclease R [Shewanella sp... 305 1e-80
gi|89094740|ref|ZP_01167675.1| ribonuclease R [Oceanospiril... 305 1e-80
gi|55980879|ref|YP_144176.1| exoribonuclease [Thermus therm... 304 1e-80
gi|153886732|ref|ZP_02007886.1| ribonuclease R [Ralstonia p... 304 1e-80
gi|118701118|ref|ZP_01559183.1| ribonuclease R [Burkholderi... 304 1e-80
gi|115351500|ref|YP_773339.1| ribonuclease R [Burkholderia ... 304 2e-80
gi|50365025|ref|YP_053450.1| virulence associated protein, ... 303 2e-80
gi|83721027|ref|YP_443038.1| ribonuclease R [Burkholderia t... 303 2e-80
gi|88798925|ref|ZP_01114507.1| ribonuclease R [Reinekea sp.... 303 2e-80
gi|89900761|ref|YP_523232.1| Ribonuclease R [Rhodoferax fer... 303 2e-80
gi|391901|dbj|BAA01777.1| ORF-2 [Shigella flexneri] 303 3e-80
gi|113971596|ref|YP_735389.1| ribonuclease R [Shewanella sp... 303 3e-80
gi|114770937|ref|ZP_01448405.1| ribonuclease R [alpha prote... 303 3e-80
gi|149369339|ref|ZP_01889191.1| exoribonuclease II [unident... 303 3e-80
gi|94500544|ref|ZP_01307075.1| ribonuclease R [Oceanobacter... 303 3e-80
gi|152981195|ref|YP_001353805.1| exoribonuclease RNAse R [J... 303 4e-80
gi|84361629|ref|ZP_00986286.1| COG0557: Exoribonuclease R [... 303 4e-80
gi|76809586|ref|YP_333367.1| ribonuclease R [Burkholderia p... 303 4e-80
gi|124895106|gb|EAY68986.1| Exoribonuclease R [Burkholderia... 303 4e-80
gi|118075374|ref|ZP_01543498.1| ribonuclease R [Shewanella ... 302 4e-80
gi|126452178|ref|YP_001066083.1| ribonuclease R [Burkholder... 301 7e-80
gi|46446682|ref|YP_008047.1| putative ribonuclease R [Candi... 301 9e-80
gi|46198862|ref|YP_004529.1| exoribonuclease II [Thermus th... 301 9e-80
gi|148244635|ref|YP_001219329.1| ribonuclease R [Candidatus... 301 1e-79
gi|114046192|ref|YP_736742.1| ribonuclease R [Shewanella sp... 301 1e-79
gi|15673187|ref|NP_267361.1| ribonuclease [Lactococcus lact... 301 1e-79
gi|53719487|ref|YP_108473.1| putative ribonuclease [Burkhol... 301 1e-79
gi|121997456|ref|YP_001002243.1| ribonuclease R [Halorhodos... 301 1e-79
gi|21673344|ref|NP_661409.1| ribonuclease II family protein... 300 2e-79
gi|71280490|ref|YP_271264.1| ribonuclease R [Colwellia psyc... 300 2e-79
gi|124385732|ref|YP_001026151.1| ribonuclease R [Burkholder... 300 2e-79
gi|53723480|ref|YP_102934.1| ribonuclease R [Burkholderia m... 300 2e-79
gi|118030682|ref|ZP_01502139.1| ribonuclease R [Burkholderi... 300 2e-79
gi|148259058|ref|YP_001233185.1| ribonuclease R [Acidiphili... 300 2e-79
gi|34498978|ref|NP_903193.1| probable ribonuclease R [Chrom... 300 3e-79
gi|118602540|ref|YP_903755.1| ribonuclease R [Candidatus Ru... 300 3e-79
gi|127514217|ref|YP_001095414.1| ribonuclease R [Shewanella... 299 4e-79
gi|24375423|ref|NP_719466.1| ribonuclease R [Shewanella one... 299 5e-79
gi|90408971|ref|ZP_01217103.1| ribonuclease R [Psychromonas... 298 6e-79
gi|77361883|ref|YP_341458.1| cold-shock RNAse R [Pseudoalte... 298 7e-79
gi|149377619|ref|ZP_01895357.1| ribonuclease R [Marinobacte... 298 7e-79
gi|110633706|ref|YP_673914.1| ribonuclease R [Mesorhizobium... 298 8e-79
gi|118038821|ref|ZP_01510224.1| ribonuclease R [Burkholderi... 298 9e-79
gi|118070247|ref|ZP_01538480.1| ribonuclease R [Serratia pr... 298 9e-79
gi|126643060|ref|YP_001086044.1| exoribonuclease R [Acineto... 298 1e-78
gi|114327467|ref|YP_744624.1| ribonuclease R [Granulibacter... 298 1e-78
gi|85058321|ref|YP_454023.1| ribonuclease R (RNase R) [Soda... 297 2e-78
gi|153820466|ref|ZP_01973133.1| ribonuclease R [Vibrio chol... 297 2e-78
gi|153010993|ref|YP_001372207.1| ribonuclease R [Ochrobactr... 297 2e-78
gi|145589452|ref|YP_001156049.1| ribonuclease R [Polynucleo... 297 2e-78
gi|117919149|ref|YP_868341.1| ribonuclease R [Shewanella sp... 297 2e-78
gi|88857115|ref|ZP_01131758.1| cold-shock RNAse R [Pseudoal... 296 3e-78
gi|150396154|ref|YP_001326621.1| ribonuclease R [Sinorhizob... 296 3e-78
gi|149926253|ref|ZP_01914515.1| putative ribonuclease R [Li... 296 4e-78
gi|87307997|ref|ZP_01090139.1| ribonuclease R [Blastopirell... 296 4e-78
gi|78186405|ref|YP_374448.1| 3'-5' exoribonuclease, VacB an... 296 5e-78
gi|15965052|ref|NP_385405.1| PUTATIVE EXORIBONUCLEASE II PR... 295 5e-78
gi|118718656|ref|ZP_01571189.1| ribonuclease R [Burkholderi... 295 8e-78
gi|91783278|ref|YP_558484.1| 3'-5' exoribonuclease, VacB an... 295 9e-78
gi|15888628|ref|NP_354309.1| hypothetical protein AGR_C_239... 294 2e-77
gi|87120579|ref|ZP_01076473.1| ribonuclease R [Marinomonas ... 293 2e-77
gi|33600960|ref|NP_888520.1| putative ribonuclease R [Borde... 293 3e-77
gi|21112591|gb|AAM40812.1| RNase R [Xanthomonas campestris ... 293 4e-77
gi|119502816|ref|ZP_01624901.1| exoribonuclease RNase R [ma... 293 4e-77
gi|33594397|ref|NP_882041.1| putative ribonuclease R [Borde... 292 4e-77
gi|77747816|ref|NP_636888.2| RNase R [Xanthomonas campestri... 292 5e-77
gi|33597116|ref|NP_884759.1| putative ribonuclease R [Borde... 292 6e-77
gi|91791875|ref|YP_561526.1| Ribonuclease R [Shewanella den... 292 6e-77
gi|17989010|ref|NP_541643.1| RIBONUCLEASE R [Brucella melit... 291 7e-77
gi|68553219|ref|ZP_00592598.1| 3'-5' exoribonuclease, VacB ... 291 8e-77
gi|144898222|emb|CAM75086.1| 3'-5' exoribonuclease, VacB an... 291 9e-77
gi|114564516|ref|YP_752030.1| ribonuclease R [Shewanella fr... 291 1e-76
gi|15805382|ref|NP_294076.1| ribonuclease [Deinococcus radi... 290 2e-76
gi|110596746|ref|ZP_01385036.1| VacB and RNase II family 3'... 290 2e-76
gi|148558486|ref|YP_001257592.1| ribonuclease R [Brucella o... 290 2e-76
gi|84623616|ref|YP_450988.1| RNase R [Xanthomonas oryzae pv... 290 2e-76
gi|67917883|ref|ZP_00511486.1| 3'-5' exoribonuclease, VacB ... 290 2e-76
gi|58581703|ref|YP_200719.1| RNase R [Xanthomonas oryzae pv... 290 3e-76
gi|118590181|ref|ZP_01547584.1| exoribonuclease protein [St... 290 3e-76
gi|13470989|ref|NP_102558.1| ribonuclease R [Mesorhizobium ... 290 3e-76
gi|119776199|ref|YP_928939.1| Exoribonuclease II [Shewanell... 289 4e-76
gi|110835054|ref|YP_693913.1| ribonuclease R [Alcanivorax b... 289 4e-76
gi|47459100|ref|YP_015962.1| vacb-like ribonuclease II [Myc... 289 4e-76
gi|23500349|ref|NP_699789.1| exoribonuclease, VacB/RNase II... 289 5e-76
gi|91977502|ref|YP_570161.1| Ribonuclease R [Rhodopseudomon... 289 6e-76
gi|121535394|ref|ZP_01667205.1| Exoribonuclease II [Thermos... 288 7e-76
gi|149179154|ref|ZP_01857723.1| ribonuclease R [Planctomyce... 288 8e-76
gi|83594533|ref|YP_428285.1| ribonuclease R [Rhodospirillum... 288 1e-75
gi|62317538|ref|YP_223391.1| exoribonuclease, VacB/RNase II... 288 1e-75
gi|154247787|ref|YP_001418745.1| ribonuclease R [Xanthobact... 288 1e-75
gi|77748594|ref|NP_641899.2| RNase R [Xanthomonas axonopodi... 288 1e-75
gi|86357271|ref|YP_469163.1| exoribonuclease protein [Rhizo... 288 1e-75
gi|84704170|ref|ZP_01017998.1| 3'-5' exoribonuclease, VacB ... 288 1e-75
gi|21107748|gb|AAM36435.1| RNase R [Xanthomonas axonopodis ... 288 1e-75
gi|78047163|ref|YP_363338.1| RNase R [Xanthomonas campestri... 287 2e-75
gi|15677073|ref|NP_274225.1| ribonuclease II family protein... 287 2e-75
gi|50086178|ref|YP_047688.1| exoribonuclease R [Acinetobact... 287 2e-75
gi|145219389|ref|YP_001130098.1| ribonuclease R [Prosthecoc... 286 2e-75
gi|119357755|ref|YP_912399.1| ribonuclease R [Chlorobium ph... 286 3e-75
gi|56698154|ref|YP_168526.1| ribonuclease R [Silicibacter p... 286 3e-75
gi|23016311|ref|ZP_00056068.1| COG0557: Exoribonuclease R [... 286 3e-75
gi|152995436|ref|YP_001340271.1| ribonuclease R [Marinomona... 286 3e-75
gi|115380647|ref|ZP_01467582.1| ribonuclease R [Stigmatella... 286 4e-75
gi|116251500|ref|YP_767338.1| putative ribonuclease R [Rhiz... 286 4e-75
gi|85715462|ref|ZP_01046443.1| 3'-5' exoribonuclease, VacB ... 286 5e-75
gi|42561375|ref|NP_975826.1| Ribonulease R [Mycoplasma myco... 285 5e-75
gi|39936188|ref|NP_948464.1| ribonuclease R [Rhodopseudomon... 285 7e-75
gi|83319777|ref|YP_424091.1| Rnase R (VacB) and RNase II fa... 285 7e-75
gi|126733867|ref|ZP_01749614.1| ribonuclease R [Roseobacter... 284 2e-74
gi|84684591|ref|ZP_01012492.1| ribonuclease R [Rhodobactera... 283 2e-74
gi|78188726|ref|YP_379064.1| Ribonuclease R [Chlorobium chl... 283 4e-74
gi|115423203|emb|CAJ49734.1| ribonuclease R [Bordetella avi... 283 4e-74
gi|121602334|ref|YP_989132.1| ribonuclease R [Bartonella ba... 283 4e-74
gi|126732712|ref|ZP_01748508.1| ribonuclease R [Sagittula s... 282 5e-74
gi|121634898|ref|YP_975143.1| putative ribonuclease [Neisse... 282 5e-74
gi|83855365|ref|ZP_00948895.1| ribonuclease R [Sulfitobacte... 282 6e-74
gi|86749538|ref|YP_486034.1| exoribonuclease R [Rhodopseudo... 282 7e-74
gi|83309976|ref|YP_420240.1| Exoribonuclease R [Magnetospir... 281 8e-74
gi|85704444|ref|ZP_01035546.1| ribonuclease R [Roseovarius ... 281 9e-74
gi|83941888|ref|ZP_00954350.1| ribonuclease R [Sulfitobacte... 281 9e-74
gi|86139455|ref|ZP_01058024.1| ribonuclease R [Roseobacter ... 281 1e-73
gi|83648223|ref|YP_436658.1| ribonuclease R [Hahella chejue... 281 1e-73
gi|59801215|ref|YP_207927.1| putative ribonuclease [Neisser... 281 1e-73
gi|15794292|ref|NP_284114.1| ribonuclease [Neisseria mening... 281 1e-73
gi|68550588|ref|ZP_00590033.1| 3'-5' exoribonuclease, VacB ... 281 1e-73
gi|78357640|ref|YP_389089.1| ribonuclease R [Desulfovibrio ... 280 3e-73
gi|84514594|ref|ZP_01001958.1| ribonuclease R [Loktanella v... 280 3e-73
gi|69936442|ref|ZP_00631268.1| 3'-5' exoribonuclease, VacB ... 278 7e-73
gi|75675905|ref|YP_318326.1| 3'-5' exoribonuclease, VacB an... 278 8e-73
gi|149201102|ref|ZP_01878077.1| ribonuclease R [Roseovarius... 278 1e-72
gi|126738607|ref|ZP_01754312.1| ribonuclease R [Roseobacter... 276 3e-72
gi|67939981|ref|ZP_00532458.1| 3'-5' exoribonuclease, VacB ... 276 3e-72
gi|26553786|ref|NP_757720.1| 3'-5' exoribonuclease RNase R ... 276 4e-72
gi|92117959|ref|YP_577688.1| Ribonuclease R [Nitrobacter ha... 276 5e-72
gi|83952814|ref|ZP_00961544.1| ribonuclease R [Roseovarius ... 275 6e-72
gi|99082834|ref|YP_614988.1| Ribonuclease R [Silicibacter s... 275 8e-72
>gi|19703943|ref|NP_603505.1| Exoribonuclease II [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19714117|gb|AAL94804.1| Exoribonuclease II [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 700
Score = 1254 bits (3245), Expect = 0.0, Method: Composition-based stats.
Identities = 700/700 (100%), Positives = 700/700 (100%)
Query: 1 MNLEKDLEKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRL 60
MNLEKDLEKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRL
Sbjct: 1 MNLEKDLEKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRL 60
Query: 61 SLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKS 120
SLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKS
Sbjct: 61 SLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKS 120
Query: 121 DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNKDLVAV 180
DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNKDLVAV
Sbjct: 121 DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNKDLVAV 180
Query: 181 EITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEID 240
EITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEID
Sbjct: 181 EITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEID 240
Query: 241 YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEA 300
YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEA
Sbjct: 241 YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEA 300
Query: 301 RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK 360
RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK
Sbjct: 301 RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK 360
Query: 361 SVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
SVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV
Sbjct: 361 SVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV
Sbjct: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
Query: 481 TLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
TLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH
Sbjct: 481 TLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
Query: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKA 600
FGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKA
Sbjct: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKA 600
Query: 601 EDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEEN 660
EDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEEN
Sbjct: 601 EDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEEN 660
Query: 661 YCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDDF 700
YCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDDF
Sbjct: 661 YCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDDF 700
>gi|148324442|gb|EDK89692.1| ribonuclease R [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 700
Score = 1217 bits (3149), Expect = 0.0, Method: Composition-based stats.
Identities = 658/700 (94%), Positives = 684/700 (97%)
Query: 1 MNLEKDLEKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRL 60
MNLEKDLEKIKELLKDVKYLTLDQITSFL+WSPKKKKDNK IILSWIDSGDL+MDKKHRL
Sbjct: 1 MNLEKDLEKIKELLKDVKYLTLDQITSFLDWSPKKKKDNKTIILSWIDSGDLVMDKKHRL 60
Query: 61 SLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKS 120
SLPENSGYVKGVFRIIKNKFAFVD+E+SEEKEGIFIPK+EFNNALDGDTVLVEITEKKKS
Sbjct: 61 SLPENSGYVKGVFRIIKNKFAFVDRENSEEKEGIFIPKDEFNNALDGDTVLVEITEKKKS 120
Query: 121 DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNKDLVAV 180
DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADN+DLVAV
Sbjct: 121 DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNRDLVAV 180
Query: 181 EITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEID 240
EITFWGDDDRKPEGKIIK+LGSSTNSKNMI+ALIYREGLSE+FSNEAMQQTKE+IKE+ID
Sbjct: 181 EITFWGDDDRKPEGKIIKVLGSSTNSKNMIEALIYREGLSEEFSNEAMQQTKEVIKEKID 240
Query: 241 YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEA 300
YSNRK+LT L IITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKK+TVLDLEA
Sbjct: 241 YSNRKDLTKLPIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKDTVLDLEA 300
Query: 301 RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK 360
RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK
Sbjct: 301 RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK 360
Query: 361 SVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
SVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILR KKFTRGSIDFELPELKV
Sbjct: 361 SVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRAKKFTRGSIDFELPELKV 420
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
+LDEDNNKVEKVLL+DRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV
Sbjct: 421 VLDEDNNKVEKVLLRDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
Query: 481 TLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
LNEIL+KFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDI H
Sbjct: 481 VLNEILAKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIGH 540
Query: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKA 600
FGL+SSHYTHFTSPIRRY+DLMVHRVLFS+IDNS+K K ADLDEIAQHISKTERVAMK
Sbjct: 541 FGLSSSHYTHFTSPIRRYADLMVHRVLFSSIDNSVKQLKLADLDEIAQHISKTERVAMKV 600
Query: 601 EDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEEN 660
EDESVRIKLVEYMQKRVGET NVMVTGFAQKK+FFETDEHIECSWD+TTAINYY F+EEN
Sbjct: 601 EDESVRIKLVEYMQKRVGETFNVMVTGFAQKKVFFETDEHIECSWDVTTAINYYVFNEEN 660
Query: 661 YCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDDF 700
YCM DT+SD VF LGDK+DVVLK+ADLLTLEI VVPLDDF
Sbjct: 661 YCMEDTNSDTVFRLGDKIDVVLKRADLLTLEITVVPLDDF 700
>gi|34764100|ref|ZP_00144977.1| Exoribonuclease II [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27886126|gb|EAA23425.1| Exoribonuclease II [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 701
Score = 1118 bits (2893), Expect = 0.0, Method: Composition-based stats.
Identities = 603/700 (86%), Positives = 654/700 (93%), Gaps = 2/700 (0%)
Query: 1 MNLEKDLEKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRL 60
MNLEKDLEK+KELLKDVKYLT +QI+SFL+W+ + KKD K I++SW+DSGDLI+ KK+R
Sbjct: 1 MNLEKDLEKVKELLKDVKYLTFEQISSFLDWTEQNKKDYKAILMSWVDSGDLILSKKNRF 60
Query: 61 SLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKS 120
SLPEN GYVKG+FRIIKN+FAFVD+EDSEEKEGIFIPKEEFNNALDGDTVLVE+TEKK +
Sbjct: 61 SLPENLGYVKGIFRIIKNRFAFVDREDSEEKEGIFIPKEEFNNALDGDTVLVELTEKKIN 120
Query: 121 DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNKDLVAV 180
DKGAEGRVVKIIE RKNTV+GILE+SK+FAFV+PTGSFG+DIYIPNS+I NA N DLVAV
Sbjct: 121 DKGAEGRVVKIIERRKNTVIGILERSKDFAFVMPTGSFGRDIYIPNSQIKNAANNDLVAV 180
Query: 181 EITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEII-KEEI 239
EITFWGD+ RKPEGK+IKILGSSTNSKNMI+ALIYREGLSEKFSNEAMQQT II +I
Sbjct: 181 EITFWGDNSRKPEGKVIKILGSSTNSKNMIEALIYREGLSEKFSNEAMQQTNSIIANSKI 240
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
DY+ RK+LTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVS+YVKK+TVLDLE
Sbjct: 241 DYTKRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLE 300
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
AR+RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKG VVNYEVYKSVI
Sbjct: 301 ARNRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVI 360
Query: 360 KSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELK 419
+SVHRMTYK VN ILDGDK+LINEYSDIYEMLKQMLELSKILR KK RGSIDFELPELK
Sbjct: 361 RSVHRMTYKAVNGILDGDKNLINEYSDIYEMLKQMLELSKILRAKKHKRGSIDFELPELK 420
Query: 420 VILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 479
V+LD+D KVEKV LKDRGEGEKIIEDFMIAANETVAERI+WLELASIYRTHEKPDREKI
Sbjct: 421 VVLDKDE-KVEKVYLKDRGEGEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKI 479
Query: 480 VTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIS 539
V LNEILSKFGYKIPNFDN+HPKQFQEIIERS++KETSMLVHKTIL +LKQARYTVEDI
Sbjct: 480 VKLNEILSKFGYKIPNFDNIHPKQFQEIIERSRNKETSMLVHKTILTSLKQARYTVEDIG 539
Query: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMK 599
HFGLASSHYTHFTSPIRRY+DLMVHRVLFSTIDNSIKPFKE DLDEIAQHISKTERVAMK
Sbjct: 540 HFGLASSHYTHFTSPIRRYADLMVHRVLFSTIDNSIKPFKEVDLDEIAQHISKTERVAMK 599
Query: 600 AEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEE 659
AEDESVRIKLVEYMQKRVGE L VMVTGFA +K+FFETDEHIECSWD+T + NYY FDEE
Sbjct: 600 AEDESVRIKLVEYMQKRVGEKLTVMVTGFAPRKVFFETDEHIECSWDVTISPNYYVFDEE 659
Query: 660 NYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
N+CM D +SD VF LGDKV+ VL++ADLLTLEI+V PL D
Sbjct: 660 NHCMVDRESDTVFNLGDKVEAVLERADLLTLEISVKPLKD 699
>gi|118480167|ref|YP_897318.1| ribonuclease R [Bacillus thuringiensis str. Al Hakam]
gi|118419392|gb|ABK87811.1| ribonuclease R [Bacillus thuringiensis str. Al Hakam]
Length = 806
Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats.
Identities = 270/657 (41%), Positives = 397/657 (60%), Gaps = 16/657 (2%)
Query: 37 KDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFV-DKEDSEEKEGIF 95
KD +++ + G +I + +R LPE V+G FAFV E + +F
Sbjct: 42 KDFVKALVTMEEKGLVIRTRSNRYGLPEKMNLVRGKLIGHARGFAFVVPDEKKTGDDDLF 101
Query: 96 IPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT 155
IP E N AL GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP
Sbjct: 102 IPPTELNGALHGDTVLARLSSQSSGSR-QEGSIVRILERGTKELVGTYTESKNFGFVIPD 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALI 214
+ DI++ S A V V+IT + ++ EG++I+ILG + I ++I
Sbjct: 161 NKRWTSDIFVLKSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVI 220
Query: 215 YREGLSEKFSNEAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEK 271
++ L F E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V K
Sbjct: 221 HKHHLPLAFPEEVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTK 279
Query: 272 LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEK 331
LENGNYKL V IADVSHYV++ + +D+EA R SVYLVDRV+PM P +SNGICSLN K
Sbjct: 280 LENGNYKLGVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPK 339
Query: 332 EEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEM 390
++LT SCEMEI+ GDVV +E+++SVIK+ RMTY DV +IL D D++LI Y + M
Sbjct: 340 VDRLTLSCEMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPM 399
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
K+M +L++ILR K+ RG+IDF+ E KV++DE+ K V+++DR EK+IE+FM+
Sbjct: 400 FKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMRDRSVSEKLIEEFMLV 458
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIE 509
ANETVAE +W+ + +YR HE P +K+ E ++ FGY + N +HP+ Q+I+E
Sbjct: 459 ANETVAEHFHWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILE 518
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR---- 565
+ + +++ +LR++KQARY E + HFGL++ YTHFTSPIRRY D +VHR
Sbjct: 519 MVQGQPEEVVISTVMLRSMKQARYDAESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRE 578
Query: 566 -VLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVM 624
++ +DN + L EIA+H S ER A++AE E+ +K EYM ++GE + M
Sbjct: 579 YIINGKVDNETQAKWREKLPEIAEHSSNMERRAVEAERETDELKKAEYMLDKIGEEYDGM 638
Query: 625 VTGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +F E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 639 ISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITI 695
>gi|52081942|ref|YP_080733.1| ribonuclease R [Bacillus licheniformis ATCC 14580]
gi|52787326|ref|YP_093155.1| Rnr [Bacillus licheniformis ATCC 14580]
gi|52005153|gb|AAU25095.1| ribonuclease R [Bacillus licheniformis ATCC 14580]
gi|52349828|gb|AAU42462.1| Rnr [Bacillus licheniformis DSM 13]
Length = 767
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 276/695 (39%), Positives = 421/695 (60%), Gaps = 19/695 (2%)
Query: 1 MNLEKDLEKIKELLKDVKY--LTLDQITSFLEWSPKKK-KDNKIIILSWIDSGDLIMDKK 57
M E+ ++K+ +K+ Y LT+ ++ LE + + K+ +++ + G ++ +
Sbjct: 1 MEKEEFMDKLLSFMKEEAYKPLTVQELEEMLEITDSDEYKELVKALVTLEEKGLVVRTRS 60
Query: 58 HRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEK 117
+R LPE +KG FAFV EDS + +FIP E N A++GDTVLV ++ +
Sbjct: 61 NRYGLPEKMNLIKGKVSAHAKGFAFVLPEDSSLDD-VFIPPSELNTAMNGDTVLVRLSTE 119
Query: 118 KKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKD 176
K EG +++IIE +VG ++KNF FVIP DI+IP A
Sbjct: 120 SGGTK-KEGAIIRIIERNIQKIVGTYTETKNFGFVIPDDKKITNDIFIPKHAKNGAVEGH 178
Query: 177 LVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQ---TKE 233
V V +T + + EG++I+ILG + I ++I++ GL F EAM+Q T +
Sbjct: 179 KVVVRLTSYPEGRMSAEGEVIEILGHKNDPGIDILSIIHKHGLPGDFPAEAMEQAGNTPD 238
Query: 234 IIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKE 293
I E+ D R++L + +I+TIDGADAKDLDDAV V KL+NG+YKL V IADVSHYV +
Sbjct: 239 TIDEK-DLEGRRDLRDQTIVTIDGADAKDLDDAVTVTKLKNGHYKLGVHIADVSHYVTEG 297
Query: 294 TVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYE 353
+ +D EA RG SVYLVDRV+PM P +SNGICSLN K ++LT SCEM I+ +G VV +E
Sbjct: 298 SPIDQEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTMSCEMLINPQGQVVEHE 357
Query: 354 VYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSID 412
+++SVIK+ RMTY DVN IL D D++L +Y + M K M +L+ ILR K+ RG++D
Sbjct: 358 IFQSVIKTTERMTYSDVNKILVDDDEELKQKYEALVPMFKDMEDLAAILRGKRMERGAVD 417
Query: 413 FELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHE 472
F+ E KV++DE+ K + V+L++R EK+IE+FM+ ANETVAE +W+ + IYR HE
Sbjct: 418 FDFKEAKVLVDEE-GKAKDVVLRERSTAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHE 476
Query: 473 KPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQA 531
PD+EK+ E ++ FGY + ++HPK Q ++E +D+ ++ +LR++KQA
Sbjct: 477 DPDQEKLQRFLEFVTTFGYVVKGTAGSIHPKALQSVLEEVRDRPEEAVISTVMLRSMKQA 536
Query: 532 RYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-----DNSIKPFKEADLDEI 586
+Y + + HFGL++ YTHFTSPIRRY DL+VHR++ + + D + + L EI
Sbjct: 537 KYDPQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIQGKTDEATREKWAEKLPEI 596
Query: 587 AQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWD 646
A+H S ER A+ AE E+ +K E+M ++GE + +++ +F E IE
Sbjct: 597 AEHTSNMERNAVDAERETDDLKKTEFMLDKIGEEFDGVISSVTNFGMFVELPNTIEGLVH 656
Query: 647 ITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ ++Y +DE++Y M + V+ +GD++ V
Sbjct: 657 VSFMTDDFYRYDEQHYAMIGERTGNVYRIGDEITV 691
>gi|89204994|ref|ZP_01183567.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R [Bacillus
weihenstephanensis KBAB4]
gi|89157008|gb|EAR77003.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R [Bacillus
weihenstephanensis KBAB4]
Length = 814
Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats.
Identities = 268/646 (41%), Positives = 393/646 (60%), Gaps = 16/646 (2%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEE-KEGIFIPKEEFNNALD 106
+ G +I + +R LPE V+G FAFV E+ + + +FIP E N AL
Sbjct: 53 EKGLVIRTRSNRYGLPEKMNLVRGKLIGHARGFAFVVPEEKKTGDDDLFIPPTELNGALH 112
Query: 107 GDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIP 165
GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP + DI+I
Sbjct: 113 GDTVLARVSAQSSGSR-QEGAIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFIL 171
Query: 166 NSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
S A V V+IT + ++ EG++I+ILG + I ++I++ L F
Sbjct: 172 KSASMGAVEGHKVVVKITGYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPE 231
Query: 226 EAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V KLENGNYKL V
Sbjct: 232 EVMEHANSVPETISEE-DIKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVH 290
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADVSHYV++ + +D+EA R SVYLVDRV+PM P +SNGICSLN K ++LT SCEME
Sbjct: 291 IADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEME 350
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKIL 401
I+ GDVV +E+++SVIK+ RMTY DV +IL D D+ LI Y + M K+M +L++IL
Sbjct: 351 INNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEALIERYEPLVPMFKEMGQLAQIL 410
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
R K+ RG+IDF+ E KV++DE+ K V+++DR EK+IE+FM+ ANETVAE +W
Sbjct: 411 REKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHW 469
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLV 520
+ + +YR HE P +K+ E ++ FGY + N +HP+ Q+I+E + + +++
Sbjct: 470 MNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEIVI 529
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR-----VLFSTIDNSI 575
+LR++KQARY + HFGL++ YTHFTSPIRRY D +VHR ++ +DN
Sbjct: 530 STVMLRSMKQARYDSNSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYIINGKVDNET 589
Query: 576 KPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFF 635
+ +L EIA+H S ER A++AE E+ +K EYM ++GE + M++ +F
Sbjct: 590 QAKWRENLPEIAEHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFV 649
Query: 636 ETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 650 ELPNTIEGLVHVSYLTDDYYRYDEKHFAMIGERTGNVFRIGDEITI 695
>gi|42784278|ref|NP_981525.1| ribonuclease R [Bacillus cereus ATCC 10987]
gi|42740209|gb|AAS44133.1| ribonuclease R [Bacillus cereus ATCC 10987]
Length = 806
Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats.
Identities = 269/657 (40%), Positives = 396/657 (60%), Gaps = 16/657 (2%)
Query: 37 KDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFV-DKEDSEEKEGIF 95
KD +++ + G +I + +R LPE V+G FAFV E + +F
Sbjct: 42 KDFVKALVTMEEKGLVIRTRSNRYGLPEKMNLVRGKLIGHARGFAFVVPDEKKTGDDDLF 101
Query: 96 IPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT 155
IP E N AL GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP
Sbjct: 102 IPPTELNGALHGDTVLARLSSQSSGSR-QEGSIVRILERGTKELVGTYTESKNFGFVIPD 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALI 214
+ DI++ S A V V+IT + ++ EG++I+ILG + I ++I
Sbjct: 161 NKRWTSDIFVLKSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVI 220
Query: 215 YREGLSEKFSNEAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEK 271
++ L F E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V K
Sbjct: 221 HKHHLPLAFPEEVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTK 279
Query: 272 LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEK 331
LENGNYKL V IADVSHYV++ + +D+EA R S+YLVDRV+PM P +SNGICSLN K
Sbjct: 280 LENGNYKLGVHIADVSHYVQEGSPIDVEAAERATSIYLVDRVIPMIPHRLSNGICSLNPK 339
Query: 332 EEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEM 390
++LT SCEMEI+ GDVV +E+++SVIK+ RMTY DV +IL D D++LI Y + M
Sbjct: 340 VDRLTLSCEMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPM 399
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
K+M +L++ILR K+ RG+IDF+ E KV++DE+ K V+++DR EK+IE+FM+
Sbjct: 400 FKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMRDRSVSEKLIEEFMLV 458
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIE 509
ANETVAE +W+ + +YR HE P +K+ E ++ FGY + N +HP+ Q+I+E
Sbjct: 459 ANETVAEHFHWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILE 518
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR---- 565
+ + +++ +LR++KQARY E + HFGL++ YTHFTSPIRRY D +VHR
Sbjct: 519 MVQGQPEEVVISTVMLRSMKQARYDAESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRE 578
Query: 566 -VLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVM 624
++ +DN + L EIA H S ER A++AE E+ +K EYM ++GE + M
Sbjct: 579 YIINGKVDNETQAKWREKLPEIADHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGM 638
Query: 625 VTGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +F E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 639 ISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITI 695
>gi|52140440|ref|YP_086389.1| ribonuclease R (RNase R) [Bacillus cereus E33L]
gi|51973909|gb|AAU15459.1| ribonuclease R (RNase R) [Bacillus cereus E33L]
Length = 810
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 269/657 (40%), Positives = 397/657 (60%), Gaps = 16/657 (2%)
Query: 37 KDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFV-DKEDSEEKEGIF 95
KD +++ + G +I + +R LPE V+G FAFV E + +F
Sbjct: 42 KDFVKALVTMEEKGLVIRTRSNRYGLPEKMNLVRGKLIGHARGFAFVVPDEKKTGDDDLF 101
Query: 96 IPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT 155
IP E N AL GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP
Sbjct: 102 IPPTELNGALHGDTVLARLSSQSSGSR-QEGSIVRILERGTKELVGTYTESKNFGFVIPD 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALI 214
+ DI++ S A V V+IT + ++ EG++I+ILG + I ++I
Sbjct: 161 NKRWTSDIFVLKSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVI 220
Query: 215 YREGLSEKFSNEAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEK 271
++ L F E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V K
Sbjct: 221 HKHHLPLAFPEEVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTK 279
Query: 272 LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEK 331
LENGNYKL V IADVSHYV++ + +D+EA R SVYLVDRV+PM P +SNGICSLN K
Sbjct: 280 LENGNYKLGVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPK 339
Query: 332 EEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEM 390
++LT SCEMEI+ GDVV +E+++SVIK+ RMTY DV +IL D D++LI Y + M
Sbjct: 340 VDRLTLSCEMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPM 399
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
K+M +L++ILR K+ RG+IDF+ E KV++DE+ K V+++DR EK+IE+FM+
Sbjct: 400 FKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMRDRSVSEKLIEEFMLV 458
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIE 509
ANETVAE +W+ + +YR HE P +K+ E ++ FGY + N +HP+ Q+I+E
Sbjct: 459 ANETVAEHFHWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILE 518
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR---- 565
+ + +++ +LR++KQARY + + HFGL++ YTHFTSPIRRY D +VHR
Sbjct: 519 MVQGQPEEVVISTVMLRSMKQARYDADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRE 578
Query: 566 -VLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVM 624
++ +DN + L EIA+H S ER A++AE E+ +K EYM ++GE + M
Sbjct: 579 YIINGKVDNETQAKWREKLPEIAEHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGM 638
Query: 625 VTGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +F E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 639 ISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITI 695
>gi|49481126|ref|YP_039117.1| ribonuclease R (RNase R) [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|49332682|gb|AAT63328.1| ribonuclease R (RNase R) [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 804
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 268/657 (40%), Positives = 397/657 (60%), Gaps = 16/657 (2%)
Query: 37 KDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFV-DKEDSEEKEGIF 95
KD +++ + G +I + +R LPE ++G FAFV E + +F
Sbjct: 42 KDFVKALVTMEEKGLVIRTRSNRYGLPEKMNLIRGKLIGHARGFAFVVPDEKKTGDDDLF 101
Query: 96 IPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT 155
IP E N AL GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP
Sbjct: 102 IPPTELNGALHGDTVLARLSSQSSGSR-QEGSIVRILERGTKELVGTYTESKNFGFVIPD 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALI 214
+ DI++ S A V V+IT + ++ EG++I+ILG + I ++I
Sbjct: 161 NKRWTSDIFVLKSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVI 220
Query: 215 YREGLSEKFSNEAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEK 271
++ L F E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V K
Sbjct: 221 HKHHLPLAFPEEVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTK 279
Query: 272 LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEK 331
LENGNYKL V IADVSHYV++ + +D+EA R SVYLVDRV+PM P +SNGICSLN K
Sbjct: 280 LENGNYKLGVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPK 339
Query: 332 EEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEM 390
++LT SCEMEI+ GDVV +E+++SVIK+ RMTY DV +IL D D++LI Y + M
Sbjct: 340 VDRLTLSCEMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPM 399
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
K+M +L++ILR K+ RG+IDF+ E KV++DE+ K V+++DR EK+IE+FM+
Sbjct: 400 FKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMRDRSVSEKLIEEFMLV 458
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIE 509
ANETVAE +W+ + +YR HE P +K+ E ++ FGY + N +HP+ Q+I+E
Sbjct: 459 ANETVAEHFHWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILE 518
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR---- 565
+ + +++ +LR++KQARY + + HFGL++ YTHFTSPIRRY D +VHR
Sbjct: 519 MVQGQPEEVVISTVMLRSMKQARYDADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRE 578
Query: 566 -VLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVM 624
++ +DN + L EIA+H S ER A++AE E+ +K EYM ++GE + M
Sbjct: 579 YIINGKVDNETQAKWREKLPEIAEHSSNMERRAVEAERETDELKKAEYMLDKIGEEYDGM 638
Query: 625 VTGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +F E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 639 ISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITI 695
>gi|89098803|ref|ZP_01171684.1| ribonuclease R [Bacillus sp. NRRL B-14911]
gi|89086479|gb|EAR65599.1| ribonuclease R [Bacillus sp. NRRL B-14911]
Length = 780
Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats.
Identities = 272/693 (39%), Positives = 420/693 (60%), Gaps = 17/693 (2%)
Query: 2 NLEKDLEKIKELLKDVKY--LTLDQIT-SFLEWSPKKKKDNKIIILSWIDSGDLIMDKKH 58
N+++ ++K+ +KD Y LT+ ++ +F KD ++ G ++ + +
Sbjct: 4 NIKQIVDKLLHFMKDEAYKPLTVQEMEEAFGIEDSSDFKDFVKALVVMEQKGLVVRTRSN 63
Query: 59 RLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKK 118
R LP+ +KG FAFV E+ + IFIP E NNA+ GD VL ++ +
Sbjct: 64 RYGLPDRMNLIKGKLSGHAKGFAFVIPEEPGLDD-IFIPPNETNNAMHGDIVLARVSSES 122
Query: 119 KSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDL 177
S + EG VV+I+E +VG +SKNF FV+P F DI+IP S A
Sbjct: 123 -SGQRREGTVVRILERGVQQIVGTYVESKNFGFVLPDDKKFTSDIFIPKSASKGAIEGHK 181
Query: 178 VAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIK- 236
V V++T + + + EG++++ILG + I ++I++ GL +F E ++Q +
Sbjct: 182 VVVKLTTYPEGRKSAEGEVLEILGHKNDPGVDILSVIHKHGLPMEFPKEVLEQANDTPDS 241
Query: 237 -EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETV 295
+E + NR++L + +I+TIDGADAKDLDDAV V KLENGNYKL V IADV++YV++ T
Sbjct: 242 IDESEIKNRRDLRDQTIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTYYVRENTP 301
Query: 296 LDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVY 355
+D EA R S+YLVDRV+PM P +SNGICSLN + ++LT SCEME+D G+VVN+E++
Sbjct: 302 IDQEAEERATSIYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEMDSSGEVVNHEIF 361
Query: 356 KSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFE 414
+SVIK+ RMTY DVN IL D D++L+ Y + M + M EL+ +LR K+ RG+IDF+
Sbjct: 362 QSVIKTTERMTYHDVNKILTDKDEELMKRYEPLVPMFQLMEELAAVLRKKRMGRGAIDFD 421
Query: 415 LPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKP 474
E KV++DE+ K V+L++R E++IE+FM+AANETVAE +W+++ IYR HE P
Sbjct: 422 FKESKVLVDEE-GKPSDVVLRERSVAERLIEEFMLAANETVAEHFHWMDVPFIYRIHEDP 480
Query: 475 DREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARY 533
+K+ E ++ FGY + N +HP+ QEIIE + M++ +LR+++QA+Y
Sbjct: 481 KEDKLRRFFEFITNFGYIVKGTANSVHPRALQEIIEEVQGTPEEMVISTVMLRSMQQAKY 540
Query: 534 TVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-----TIDNSIKPFKEADLDEIAQ 588
E + HFGL++ YTHFTSPIRRY DL+VHR++ + + + + + L +IA+
Sbjct: 541 DPESLGHFGLSTEFYTHFTSPIRRYPDLVVHRLIRTYLIEGDLSQATRERMNSRLPDIAE 600
Query: 589 HISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDIT 648
H S ER A++AE E+ +K EYM ++GE + +++ +F E IE ++
Sbjct: 601 HSSNMERRAVEAERETDELKKAEYMADKIGEEYDGIISSVTNFGMFVELPNTIEGLIHVS 660
Query: 649 TAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
+YY +DE ++ M + VF +GD++ V
Sbjct: 661 YMTDDYYRYDERHFAMIGEKTGNVFRIGDEITV 693
>gi|47567335|ref|ZP_00238048.1| exoribonuclease, VacB/RNase II family [Bacillus cereus G9241]
gi|47555956|gb|EAL14294.1| exoribonuclease, VacB/RNase II family [Bacillus cereus G9241]
Length = 793
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 268/657 (40%), Positives = 396/657 (60%), Gaps = 16/657 (2%)
Query: 37 KDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFV-DKEDSEEKEGIF 95
KD +++ + G +I + +R LPE ++G FAFV E + +F
Sbjct: 27 KDFVKALVTMEEKGLVIRTRSNRYGLPEKMNLIRGKLIGHARGFAFVVPDEKKTGDDDLF 86
Query: 96 IPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT 155
IP E N AL GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP
Sbjct: 87 IPPTELNGALHGDTVLARLSSQSSGSR-QEGSIVRILERGTKELVGTYTESKNFGFVIPD 145
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALI 214
+ DI++ S A V V+IT + ++ EG++I+ILG + I ++I
Sbjct: 146 NKRWTSDIFVLKSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVI 205
Query: 215 YREGLSEKFSNEAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEK 271
++ L F E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V K
Sbjct: 206 HKHHLPLAFPEEVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTK 264
Query: 272 LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEK 331
LENGNYKL V IADVSHYV++ + +D+EA R SVYLVDRV+PM P +SNGICSLN K
Sbjct: 265 LENGNYKLGVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPK 324
Query: 332 EEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEM 390
++LT SCEMEI+ GDVV +E+++SVIK+ RMTY DV +IL D D++LI Y + M
Sbjct: 325 VDRLTLSCEMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPM 384
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
K+M +L++ILR K+ RG+IDF+ E KV++DE+ K V++ DR EK+IE+FM+
Sbjct: 385 FKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMGDRSVSEKLIEEFMLV 443
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIE 509
ANETVAE +W+ + +YR HE P +K+ E ++ FGY + N +HP+ Q+I+E
Sbjct: 444 ANETVAEHFHWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILE 503
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR---- 565
+ + +++ +LR++KQARY + + HFGL++ YTHFTSPIRRY D +VHR
Sbjct: 504 MVQGQPEEVVISTVMLRSMKQARYDADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRE 563
Query: 566 -VLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVM 624
++ +DN + L EIA+H S ER A++AE E+ +K EYM ++GE + M
Sbjct: 564 YIINGKVDNETQAKWREKLPEIAEHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGM 623
Query: 625 VTGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +F E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 624 ISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITI 680
>gi|30023166|ref|NP_834797.1| Exoribonuclease II [Bacillus cereus ATCC 14579]
gi|29898726|gb|AAP11998.1| Exoribonuclease II [Bacillus cereus ATCC 14579]
Length = 808
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 268/657 (40%), Positives = 397/657 (60%), Gaps = 16/657 (2%)
Query: 37 KDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFV-DKEDSEEKEGIF 95
KD +++ + G +I + +R LPE ++G FAFV E + +F
Sbjct: 42 KDFVKALVTMEEKGLVIRTRSNRYGLPEKMNLIRGKLIGHARGFAFVVPDEKKTGDDDLF 101
Query: 96 IPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT 155
IP E N AL GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP
Sbjct: 102 IPPTELNGALHGDTVLARLSSQSSGSR-QEGSIVRILERGTKELVGTYTESKNFGFVIPD 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALI 214
+ DI++ S A V V+IT + ++ EG++I+ILG + I ++I
Sbjct: 161 NKRWTSDIFVLKSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVI 220
Query: 215 YREGLSEKFSNEAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEK 271
++ L F E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V K
Sbjct: 221 HKHHLPLAFPEEVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTK 279
Query: 272 LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEK 331
LENGNYKL V IADVSHYV++ + +D+EA R SVYLVDRV+PM P +SNGICSLN K
Sbjct: 280 LENGNYKLGVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPK 339
Query: 332 EEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEM 390
++LT SCEMEI+ GDVV +E+++SVIK+ RMTY DV +IL D D++LI Y + M
Sbjct: 340 VDRLTLSCEMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPM 399
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
K+M +L++ILR K+ RG+IDF+ E KV++DE+ K V+++DR EK+IE+FM+
Sbjct: 400 FKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMRDRSVSEKLIEEFMLV 458
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIE 509
ANETVAE +W+ + +YR HE P +K+ E ++ FGY + N +HP+ Q+I+E
Sbjct: 459 ANETVAEHFHWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILE 518
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR---- 565
+ + +++ +LR++KQARY + + HFGL++ YTHFTSPIRRY D +VHR
Sbjct: 519 MVQGQPEEVVISTVMLRSMKQARYDADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRE 578
Query: 566 -VLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVM 624
++ +DN + L EIA+H S ER A++AE E+ +K EYM ++GE + M
Sbjct: 579 YIINGKVDNETQAKWREKLPEIAEHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGM 638
Query: 625 VTGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +F E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 639 ISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITI 695
>gi|30265133|ref|NP_847510.1| ribonuclease R [Bacillus anthracis str. Ames]
gi|47778388|ref|YP_021992.2| ribonuclease r [Bacillus anthracis str. 'Ames Ancestor']
gi|49187943|ref|YP_031196.1| ribonuclease R [Bacillus anthracis str. Sterne]
gi|65317078|ref|ZP_00390037.1| COG0557: Exoribonuclease R [Bacillus anthracis str. A2012]
gi|30259810|gb|AAP28996.1| ribonuclease R [Bacillus anthracis str. Ames]
gi|47552093|gb|AAT34467.2| ribonuclease R [Bacillus anthracis str. 'Ames Ancestor']
gi|49181870|gb|AAT57246.1| ribonuclease R [Bacillus anthracis str. Sterne]
Length = 808
Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats.
Identities = 267/657 (40%), Positives = 397/657 (60%), Gaps = 16/657 (2%)
Query: 37 KDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFV-DKEDSEEKEGIF 95
KD +++ + G +I + +R LPE ++G FAFV E + +F
Sbjct: 42 KDFVKALVTMEEKGLVIRTRSNRYGLPEKMNLIRGKLIGHARGFAFVVPDEKKTGDDDLF 101
Query: 96 IPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT 155
IP E N AL GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP
Sbjct: 102 IPPTELNGALHGDTVLARLSSQSSGSR-QEGSIVRILERGTKELVGTYTESKNFGFVIPD 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALI 214
+ DI++ S A V V+IT + ++ EG++I+ILG + I ++I
Sbjct: 161 NKRWTSDIFVLKSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVI 220
Query: 215 YREGLSEKFSNEAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEK 271
++ L F E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V K
Sbjct: 221 HKHHLPLAFPEEVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTK 279
Query: 272 LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEK 331
LENGNYKL V IADVSHYV++ + +D+EA R SVYLVDRV+PM P +SNGICSLN K
Sbjct: 280 LENGNYKLGVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPK 339
Query: 332 EEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEM 390
++LT SCEMEI+ GDVV +E+++SVIK+ RMTY DV +IL D D++L+ Y + M
Sbjct: 340 VDRLTLSCEMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELMKRYEPLVPM 399
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
K+M +L++ILR K+ RG+IDF+ E KV++DE+ K V+++DR EK+IE+FM+
Sbjct: 400 FKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMRDRSVSEKLIEEFMLV 458
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIE 509
ANETVAE +W+ + +YR HE P +K+ E ++ FGY + N +HP+ Q+I+E
Sbjct: 459 ANETVAEHFHWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILE 518
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR---- 565
+ + +++ +LR++KQARY + + HFGL++ YTHFTSPIRRY D +VHR
Sbjct: 519 MVQGQPEEVVISTVMLRSMKQARYDADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRE 578
Query: 566 -VLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVM 624
++ +DN + L EIA+H S ER A++AE E+ +K EYM ++GE + M
Sbjct: 579 YIINGKVDNETQAKWREKLPEIAEHSSNMERRAVEAERETDELKKAEYMLDKIGEEYDGM 638
Query: 625 VTGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +F E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 639 ISSVTNFGLFVELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITI 695
>gi|153955985|ref|YP_001396750.1| Rnr [Clostridium kluyveri DSM 555]
gi|146348843|gb|EDK35379.1| Rnr [Clostridium kluyveri DSM 555]
Length = 709
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 274/697 (39%), Positives = 413/697 (59%), Gaps = 17/697 (2%)
Query: 8 EKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
E I + +K+ Y + + ++ K+ K I+ G ++ + +R +P+
Sbjct: 5 EAIVDFMKEQAYKPMNIKELERVFSVKKADVKNFKKIVDEIEREGAIVKTRTNRYGIPDR 64
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
G V G F+ + + FV D E + IF+P N A++GD V+V+IT++ ++K E
Sbjct: 65 MGLVTGKFQGHQKGYGFVIPYD--EGKDIFVPSSALNGAMNGDRVVVKITKQANTEKKCE 122
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPT-GSFGKDIYIPNSKIANADNKDLVAVEITF 184
G +++++E + V+G E S+NF FV+P +DI+IP + A+ D+V EIT
Sbjct: 123 GEIIRVLERANSKVIGTFENSRNFGFVVPEEKRIYQDIFIPKNCKKEAETGDIVIAEITQ 182
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI---DY 241
W D R PEGKI+ ILG I +I + L E+F + ++ E I E+I +Y
Sbjct: 183 WPDKRRNPEGKIVDILGKKGEKGIDILTIIKKNNLPEEFP-QKVESYAENIPEKIPDKEY 241
Query: 242 SNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEAR 301
R +L N+ +TIDG DAKDLDDAV +EKL +G+Y L V IADVS+YVK++ LD EA
Sbjct: 242 ERRMDLRNILTVTIDGEDAKDLDDAVSLEKLPDGSYYLGVHIADVSYYVKEKNPLDKEAL 301
Query: 302 HRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKS 361
RG SVYL+DRV+PM PK++SNGICSLN ++LT SC M+ID G V+ + + +SVI+S
Sbjct: 302 KRGTSVYLIDRVIPMLPKKLSNGICSLNPNIDRLTLSCFMKIDGNGKVIEHNIVESVIRS 361
Query: 362 VHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RMTY DV IL GD + I +Y ++ + K M EL +IL K+ RG+IDF+ E K+
Sbjct: 362 NERMTYTDVTKILKGDTETIEKYGNLVDTFKLMEELCRILNKKRMMRGAIDFDFEECKIT 421
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
L+E + K+ +RG +IIE+FM+ NET+AE ++W L ++R HE PD EK++
Sbjct: 422 LNELGVPI-KIEPYERGISNRIIEEFMLVCNETIAEHMFWTTLPFVFRVHENPDEEKLMH 480
Query: 482 LNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHF 541
NE + GY + ++HPK Q+II++ K K+ +V +LR++KQARY+ E I HF
Sbjct: 481 FNEFIHNLGYVVRWGKDVHPKTLQDIIDKVKGKKEETVVSTLMLRSMKQARYSPECIGHF 540
Query: 542 GLASSHYTHFTSPIRRYSDLMVHRVLFSTI-----DNSIKPFKEADLDEIAQHISKTERV 596
GLA+ +Y HFTSPIRRY DL++HR++ I DN IK + ++D A+ S ER+
Sbjct: 541 GLAAKYYCHFTSPIRRYPDLIIHRIIKEFINGQLTDNRIKRLVK-EVDYAARQSSDMERL 599
Query: 597 AMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYYA 655
A +AE E +K EYM R+GE N +++ +F E IE I+T +YY
Sbjct: 600 AQEAEREVDDLKKAEYMSTRIGEEFNGIISSVTNFGMFVEIPNTIEGLVHISTLEDDYYV 659
Query: 656 FDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+DE++ + + ++ LGD+V + + K DL EI
Sbjct: 660 YDEKHLSLIGERTKNIYKLGDEVRIYVSKVDLAAHEI 696
>gi|152977348|ref|YP_001376865.1| ribonuclease R [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152026100|gb|ABS23870.1| ribonuclease R [Bacillus cereus subsp. cytotoxis NVH 391-98]
Length = 792
Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats.
Identities = 269/646 (41%), Positives = 393/646 (60%), Gaps = 16/646 (2%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEE-KEGIFIPKEEFNNALD 106
++G ++ + +R LPE V+G FAFV E+ + + +FIP E N AL
Sbjct: 53 ETGLVVRTRSNRYGLPEKMNLVRGKLIGHARGFAFVVPEEKKTGDDDLFIPPTELNGALH 112
Query: 107 GDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIP 165
GDTVL I+ + + EG +++I+E +VG +SKNF FVIP + DI+IP
Sbjct: 113 GDTVLARISSQSSGSR-QEGTIIRIVERGTKELVGTYTESKNFGFVIPDNKRWTSDIFIP 171
Query: 166 NSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
S A V V+IT + + EG++I+ILG + I ++I++ L F
Sbjct: 172 KSASMGAVEGHKVVVKITSYPQNRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPE 231
Query: 226 EAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V KLENGNYKL V
Sbjct: 232 EVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVH 290
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADVSHYV + + +D+EA R SVYLVDRV+PM P +SNGICSLN K ++LT SCEME
Sbjct: 291 IADVSHYVHEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEME 350
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAI-LDGDKDLINEYSDIYEMLKQMLELSKIL 401
I+ GDVV +E+++SVIK+ RMTY DV +I D D++L+ Y + M K+M EL++IL
Sbjct: 351 INHLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELMERYKPLVPMFKEMAELAQIL 410
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
R K+ RG+IDF+ E KV++DE+ K V+L+DR EK+IE+FM+ ANETVAE +W
Sbjct: 411 REKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVLRDRSISEKLIEEFMLVANETVAEHFHW 469
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLV 520
+ + +YR HE+P +K+ E ++ FGY + N +HP+ Q+I+E + + ++
Sbjct: 470 MNVPFMYRIHEEPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEPVI 529
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR-----VLFSTIDNSI 575
+LR++KQARY E + HFGL++ YTHFTSPIRRY D +VHR ++ IDN
Sbjct: 530 STVMLRSMKQARYDAESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYIINGNIDNET 589
Query: 576 KPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFF 635
+ L +IA+H S ER A++AE E+ +K EYM ++GE + M++ +F
Sbjct: 590 QAKWHEKLPDIAEHSSNMERRAVEAERETDELKKAEYMLDKIGEEYDGMISSVTNFGLFV 649
Query: 636 ETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
E IE ++ +YY +DE+++ M + VF +GD++ +
Sbjct: 650 ELPNTIEGLVHVSYLTDDYYRYDEQHFAMIGERTGNVFRIGDEITI 695
>gi|148378235|ref|YP_001252776.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
gi|153931432|ref|YP_001382636.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
gi|153934693|ref|YP_001386188.1| ribonuclease R [Clostridium botulinum A str. Hall]
gi|148287719|emb|CAL81784.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
gi|152927476|gb|ABS32976.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
gi|152930607|gb|ABS36106.1| ribonuclease R [Clostridium botulinum A str. Hall]
Length = 725
Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats.
Identities = 277/653 (42%), Positives = 390/653 (59%), Gaps = 14/653 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G ++ + +P G V G + + F FV E EE+E IFIP N A+ D
Sbjct: 49 GQIVKTRTEHYGIPARMGLVLGKLQGHQKGFGFVIPE--EEREDIFIPASSMNGAMHTDR 106
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL +IT++ + K EG +++I+E TV+GI E SKNF FV+ +DI+IP
Sbjct: 107 VLAKITKESANGKRCEGEIIRILERGNKTVIGIYEDSKNFGFVVSDDKKIYQDIFIPKGD 166
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A +V EI + + R PEG++I+ILG+ + I +I + L E+F +
Sbjct: 167 KNGAKTGQVVIAEIVTYPEKRRNPEGRVIEILGNKEDKGIDILTIIKKNKLPEEFPPKVQ 226
Query: 229 Q---QTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
E I EE +Y R++L +L+I+TIDG DAKDLDDA+ +EKL NGNY L V IAD
Sbjct: 227 SYADNISEAIPEE-EYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIAD 285
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VSHYVK++ LD EA R SVYL+DRV+PM PK++SNGICSLN K ++LT SC MEID
Sbjct: 286 VSHYVKEKNPLDKEALKRATSVYLIDRVIPMLPKKLSNGICSLNPKIDRLTLSCFMEIDK 345
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIK 404
G VV++ V +S+IKS RMTY DV IL D D++ IN+YS++ + K M EL KIL K
Sbjct: 346 NGKVVDHRVVESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKK 405
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDF+ E K+ILDE +E + +R +IIE+FM+ NET+AE ++W L
Sbjct: 406 RLKRGAIDFDFEECKIILDEKGKPIE-IKPYERAIANRIIEEFMLVCNETIAEHMFWSNL 464
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
+YR HE PD EK++ NE + GY I +++HPK Q IIE+ K ++ +V +
Sbjct: 465 PFVYRIHEDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLL 524
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLD 584
LR+LKQARY+ E I HFGLA+ +Y HFTSPIRRY DL++HR++ I+ I + L
Sbjct: 525 LRSLKQARYSPECIGHFGLAARYYCHFTSPIRRYPDLIIHRIIKEYINGQIDDKRATKLT 584
Query: 585 EIAQHISK----TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEH 640
++ SK ERVA +AE E +K EYM +R+GE +++ +F E
Sbjct: 585 TEVEYASKQSSEMERVAQEAEREVDDLKKAEYMSERIGEEYEGIISSVTNFGMFVELPNT 644
Query: 641 IECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
IE I+T + +YY +DE + S ++ LGD V + + K DL + EI
Sbjct: 645 IEGLVHISTLSDDYYIYDERRLSLIGEASKNIYRLGDTVKIKVSKVDLFSHEI 697
>gi|138896635|ref|YP_001127088.1| Ribonuclease R [Geobacillus thermodenitrificans NG80-2]
gi|134268148|gb|ABO68343.1| Ribonuclease R [Geobacillus thermodenitrificans NG80-2]
Length = 755
Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats.
Identities = 261/644 (40%), Positives = 390/644 (60%), Gaps = 14/644 (2%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G ++ + +R +PE V+G FAFV E+ + IFIP E NA+ G
Sbjct: 50 EEGLVVRTRSNRYGVPERMNLVRGKVTGHAKGFAFVTPEEPG-MDDIFIPPSELKNAMHG 108
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
DTVLV + + + EG +V+I+E VVG +SK F FVIP DI+IP
Sbjct: 109 DTVLVRVQSESGGAR-REGTIVRILERGVKEVVGTYTESKYFGFVIPDDKRIVNDIFIPK 167
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
+ A V V +T + + EG++++ILG + I ++IY+ GL +F ++
Sbjct: 168 NAANGAVEGHKVVVRLTSYPEGRMSAEGEVVQILGHKNDPGVDILSVIYKHGLPLQFPDD 227
Query: 227 AMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ + + E D R++L I+TIDG DAKDLDDAV V KLENGNYKL V IA
Sbjct: 228 VIDHANRVPDVITEKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIA 287
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVSHYV++ + +D EA RG SVYLVDRV+PM P +SNGICSLN K ++LT SCEMEI
Sbjct: 288 DVSHYVEEGSPIDREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEIT 347
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRI 403
+G+VV++++++SVI++ RMTY DVN IL D D+ L +Y+ + M + M EL+ ILR
Sbjct: 348 PQGEVVSHDIFQSVIRTTERMTYSDVNKILVDKDEALREKYAPLVPMFELMAELADILRT 407
Query: 404 KKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE 463
K+ RG+IDF+ E KV++DE N K V+L++R E++IE+FM+ ANETVAE +WL
Sbjct: 408 KRMKRGAIDFDFKEAKVLVDE-NGKPYDVVLRERSVAERLIEEFMLVANETVAEHFHWLN 466
Query: 464 LASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHK 522
+ +YR HE P EK+ E ++ FGY + N +HP+ Q+I+E + + M++
Sbjct: 467 VPFMYRVHEDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVIST 526
Query: 523 TILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPFKEA 581
+LR++KQARY E + H+GL++ YTHFTSPIRRY DL+VHR++ + I+ + P +
Sbjct: 527 VMLRSMKQARYDAESLGHYGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGQMDPDTQQ 586
Query: 582 ----DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFET 637
L +IA+H S ER A++AE E+ +K E+M+ ++G + +++ +F E
Sbjct: 587 KWAEKLPDIAEHASNMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVEL 646
Query: 638 DEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
IE ++ +YY +DE NY M + K++ +GD++ V
Sbjct: 647 PNTIEGLVHVSYLTDDYYRYDERNYAMVGERTGKMYRIGDEITV 690
>gi|153939819|ref|YP_001389595.1| ribonuclease R [Clostridium botulinum F str. Langeland]
gi|152935715|gb|ABS41213.1| ribonuclease R [Clostridium botulinum F str. Langeland]
Length = 725
Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats.
Identities = 280/685 (40%), Positives = 401/685 (58%), Gaps = 14/685 (2%)
Query: 18 KYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIK 77
K + + ++ + + KD + ++ G ++ + +P G V G + +
Sbjct: 17 KPMNIKELKQVFGVTKHEYKDFEKMLRDMEKDGQIVKTRTEHYGIPSRMGLVLGKLQGHQ 76
Query: 78 NKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKN 137
+ FV E EE+E IFIP N A+ D VL +IT++ + K EG +++I+E
Sbjct: 77 KGYGFVIPE--EEREDIFIPASSMNGAMHTDRVLAKITKESANGKRCEGEIIRILERGNK 134
Query: 138 TVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKI 196
TV+GI E SKNF FV+ +DI+IP A +V EI + + R PEG+I
Sbjct: 135 TVIGIYEDSKNFGFVVSDDKKIYQDIFIPKGDKNGAKTGQVVIAEIVTYPEKRRNPEGRI 194
Query: 197 IKILGSSTNSKNMIDALIYREGLSEKFSNEAMQ---QTKEIIKEEIDYSNRKNLTNLSII 253
I+ILG + I +I + L E+F + E I EE +Y R++L +L+I+
Sbjct: 195 IEILGYKEDKGIDILTIIKKNKLPEEFPPKVQSYADNISEAIPEE-EYKRREDLRDLTIV 253
Query: 254 TIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRV 313
TIDG DAKDLDDA+ +EKL NGNY L V IADVSHYVK++ LD EA R SVYL+DRV
Sbjct: 254 TIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLDKEALKRATSVYLIDRV 313
Query: 314 LPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAI 373
+PM PK++SNGICSLN K ++LT SC MEID G VV++ V +S+IKS RMTY DV I
Sbjct: 314 IPMLPKKLSNGICSLNPKIDRLTLSCFMEIDKNGKVVDHRVVESIIKSTERMTYTDVTKI 373
Query: 374 L-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKV 432
L D D++ IN+YS++ + K M EL KIL K+ RG+IDF+ E K+ILDE +E +
Sbjct: 374 LRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFDFEECKIILDEKGKPIE-I 432
Query: 433 LLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYK 492
+R +IIE+FM+ NET+AE ++W L +YR HE PD EK++ NE + GY
Sbjct: 433 KPYERAIANRIIEEFMLVCNETIAEHMFWSNLPFVYRIHEDPDEEKLMHFNEFVHNLGYV 492
Query: 493 IPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFT 552
I +++HPK Q IIE+ K ++ +V +LR+LKQARY+ E I HFGLA+ +Y HFT
Sbjct: 493 IRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQARYSPECIGHFGLAARYYCHFT 552
Query: 553 SPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISK----TERVAMKAEDESVRIK 608
SPIRRY DL++HR++ I+ I + L ++ SK ERVA +AE E +K
Sbjct: 553 SPIRRYPDLIIHRIIKEYINGQIDDKRATRLTTEVEYASKQSSEMERVAQEAEREVDDLK 612
Query: 609 LVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYYAFDEENYCMRDTD 667
EYM +R+GE +++ +F E IE I+T + +YY +DE +
Sbjct: 613 KAEYMSERIGEEYEGIISSVTNFGMFVELPNTIEGLVHISTLSDDYYIYDERRLSLIGEA 672
Query: 668 SDKVFYLGDKVDVVLKKADLLTLEI 692
S ++ LGD V + + K DL + EI
Sbjct: 673 SKNIYRLGDTVKIKVSKVDLFSHEI 697
>gi|154687491|ref|YP_001422652.1| Rnr [Bacillus amyloliquefaciens FZB42]
gi|154353342|gb|ABS75421.1| Rnr [Bacillus amyloliquefaciens FZB42]
Length = 777
Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats.
Identities = 269/695 (38%), Positives = 416/695 (59%), Gaps = 19/695 (2%)
Query: 1 MNLEKDLEKIKELLKDVKY--LTLDQITSFLEWSPKKK-KDNKIIILSWIDSGDLIMDKK 57
M E ++++ +K+ Y LT+ ++ L + + K+ +++ ++G ++ +
Sbjct: 1 MEKEAFMDRLLAFMKEEAYKPLTVQELEEMLNITEADEFKELVKALVALEETGQIVRTRS 60
Query: 58 HRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEK 117
+R LPE VKG FAF+ ED+ + +FIP E N A++GD V+V + +
Sbjct: 61 NRYGLPEKMNLVKGKISAHAKGFAFLLPEDTSLSD-VFIPPNELNTAMNGDIVMVRLNSQ 119
Query: 118 KKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKD 176
+ EG V++I+E + VVG ++K+F FVIP DI+IP A
Sbjct: 120 SSGSR-QEGTVIRILERSIDRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANNGAAEGH 178
Query: 177 LVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQ---TKE 233
V V++T + + EG+I++ILG + I ++I++ GL F EAM+Q T +
Sbjct: 179 KVVVKLTSYPEGRMNAEGEIVEILGHKNDPGIDILSIIHKHGLPGDFPAEAMEQATSTPD 238
Query: 234 IIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKE 293
I E+ D +R++L + I+TIDGADAKDLDDAV V KL+NG+YKL V IADVSHYV +
Sbjct: 239 TIDEK-DIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTEN 297
Query: 294 TVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYE 353
+ +D EA RG SVYLVDRV+PM P +SNGICSLN K ++LT SCEM I+ +G V +E
Sbjct: 298 SPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHE 357
Query: 354 VYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSID 412
+++SVIK+ RMTY DVN IL + D +L Y + M K M L++ILR K+ RG++D
Sbjct: 358 IFQSVIKTTERMTYSDVNRILTEDDAELKERYEPLVPMFKDMERLAEILRAKRMDRGAVD 417
Query: 413 FELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHE 472
F+ E KV++DE+ V+ V++++R EK+IE+FM+ ANETVAE +W+ + IYR HE
Sbjct: 418 FDFKEAKVLVDEE-GAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHE 476
Query: 473 KPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQA 531
+P+ EK+ E ++ FGY + ++HP+ Q I++ +D+ ++ +LR++KQA
Sbjct: 477 EPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSMKQA 536
Query: 532 RYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-----DNSIKPFKEADLDEI 586
+Y + + HFGLA+ YTHFTSPIRRY DL+VHR++ + + D + + L EI
Sbjct: 537 KYDPQSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINGQSDEATQEKWAERLPEI 596
Query: 587 AQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWD 646
A H S ER A+ AE E+ +K EYM ++GE + M++ +F E IE
Sbjct: 597 ADHTSTMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVH 656
Query: 647 ITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +YY FDE+++ M + V+ +GD++ V
Sbjct: 657 VSFMTDDYYRFDEQHFAMIGERTGNVYRIGDEITV 691
>gi|28210140|ref|NP_781084.1| exoribonuclease II [Clostridium tetani E88]
gi|28202576|gb|AAO35021.1| exoribonuclease II [Clostridium tetani E88]
Length = 708
Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats.
Identities = 278/696 (39%), Positives = 416/696 (59%), Gaps = 14/696 (2%)
Query: 8 EKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
E + E +K+ Y + L ++ + +D K ++ G ++ + +PE
Sbjct: 5 ETLIEFMKEQAYKPMNLKELAKVFNIKGDEIEDFKKVLDYMEKDGLVVKTRTEYYGVPER 64
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
G + G + + +AF+ ED + + +FIP N A++GD V+V+ ++ + K +E
Sbjct: 65 MGLIVGKIQGHQRGYAFLIPED--DIQDVFIPASGLNGAMNGDKVVVKTFKEVREGKKSE 122
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIP-TGSFGKDIYIPNSKIANADNKDLVAVEITF 184
G V++I+ T++G E SKNF FV+P +DIYIP +A A + D+V EIT
Sbjct: 123 GEVIRILNRANKTIIGTFEDSKNFGFVVPDEKRIYQDIYIPKGNVAGAHSGDIVIAEITK 182
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYS 242
W + R PEGKI++ILG I +I + L E+F + + E E +Y
Sbjct: 183 WPEKRRSPEGKIVEILGKKGEKGIDILTIIKKYNLPEEFPQKVQSYLDGVPNEINEEEYK 242
Query: 243 NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
NR +L ++ IITIDG DAKDLDDA+ +EKL NGN+ L V IADVSHYVK++ LD EA
Sbjct: 243 NRLDLRDIKIITIDGEDAKDLDDAISIEKLPNGNFYLGVHIADVSHYVKEKNPLDKEALK 302
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RG SVYLVDRV+PM PKE+SNGICSLN K ++LT SC MEID G V+ ++V +SVI S
Sbjct: 303 RGTSVYLVDRVIPMLPKELSNGICSLNPKVDRLTLSCFMEIDKTGKVIAHKVAESVINSS 362
Query: 363 HRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RMTY DVN IL D D++LI +Y + E K M EL K+L K+ RG+IDF+ E K+I
Sbjct: 363 ERMTYTDVNKILKDNDQELIKKYDYLMENFKSMEELCKVLYKKRINRGAIDFDFEECKII 422
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
LDED V+ + +R ++IE+FM+ NET+AE ++W + +YR HE+PD EK+
Sbjct: 423 LDEDGKPVD-IKPYEREIANRMIEEFMLVCNETIAEYMFWSNIPFVYRIHEEPDLEKLQH 481
Query: 482 LNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHF 541
NE + GY I +HPK Q+++E+ + K+ ++++ +LR+LKQA+Y+ E I HF
Sbjct: 482 FNEFVYNLGYTIKYSKEVHPKSLQQVVEKVRGKKEEVVINTLLLRSLKQAKYSPECIGHF 541
Query: 542 GLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK----EADLDEIAQHISKTERVA 597
GLA+ +Y HFTSPIRRY DL++HR++ I N I + E ++ + S+ ER+A
Sbjct: 542 GLAARYYCHFTSPIRRYPDLIIHRIIKEYIKNGISEKRVKKLEGEVSSASIQSSEMERLA 601
Query: 598 MKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI-NYYAF 656
+AE E +K EYM +R+GE N +++ +F E +E I+T + +YY +
Sbjct: 602 EEAEREVDDLKKAEYMSERIGEVYNGIISSVTAFGLFVELPNTVEGLIHISTLLDDYYVY 661
Query: 657 DEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
DE + + K++ LGD+V + ++K DL + EI
Sbjct: 662 DERGLRLVGEKTKKMYRLGDEVKIKVEKVDLDSYEI 697
>gi|56421579|ref|YP_148897.1| ribonuclease R [Geobacillus kaustophilus HTA426]
gi|56381421|dbj|BAD77329.1| ribonuclease R [Geobacillus kaustophilus HTA426]
Length = 758
Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats.
Identities = 265/649 (40%), Positives = 389/649 (59%), Gaps = 24/649 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G ++ + +R +PE V+G FAFV E+ + IFIP E NA+ G
Sbjct: 50 EEGLVVRTRSNRYGVPERMNLVRGKVIGHPKGFAFVTPEEPGLDD-IFIPPSELKNAMHG 108
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
DTVLV + + S EG +V+I+E VVG +SK F FVIP DI+IP
Sbjct: 109 DTVLVRV-QADSSGARREGTIVRILERGVKEVVGTYTESKYFGFVIPDDKRIVNDIFIPK 167
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
+ A V +T + + EG++++ILG + I A+IY+ GL +F +
Sbjct: 168 NAANGAVEGHKVVARLTSYPEGRMSAEGEVVQILGHKNDPGVDILAIIYKYGLPLQFPED 227
Query: 227 AMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
++Q + + E D R++L I+TIDG DAKDLDDAV V KLENGNYKL V IA
Sbjct: 228 VIEQANRVPDVITEKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIA 287
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV++ + +D EA RG SVYLVDRV+PM P +SNGICSLN K ++LT SCEMEI
Sbjct: 288 DVSYYVEEGSPIDREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEIT 347
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRI 403
+G+VV +E++ SVI++ RMTY DVN IL D D+ L +Y+ + M + M EL+ ILR
Sbjct: 348 PQGEVVRHEIFPSVIRTAERMTYSDVNKILVDKDEILREKYAPLVPMFELMAELADILRA 407
Query: 404 KKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE 463
K+ RG+IDF+ E KV++DE N K V+L++R E++IE+FM+AANETVAE +WL
Sbjct: 408 KRMKRGAIDFDFKEAKVLVDE-NGKPYDVVLRERSVAERLIEEFMLAANETVAEHFHWLN 466
Query: 464 LASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHK 522
+ IYR HE P EK+ E ++ FGY + N +HP+ Q+I+E + + M++
Sbjct: 467 VPFIYRVHEDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVIST 526
Query: 523 TILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEAD 582
+LR++KQARY E + H+GL++ YTHFTSPIRRY DL+VHR++ + + N + D
Sbjct: 527 VMLRSMKQARYDAESLGHYGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLING-----QMD 581
Query: 583 LD----------EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKK 632
LD EIA+H S ER A++AE E+ +K E+M+ ++G + +++
Sbjct: 582 LDTQQKWAEKLPEIAEHASDMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFG 641
Query: 633 IFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
+F E IE ++ +YY +DE +Y + + K++ +GD++ V
Sbjct: 642 LFVELPNTIEGLVHVSYLTDDYYRYDERHYALIGERTGKMYRIGDEITV 690
>gi|16080414|ref|NP_391241.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
gi|7674332|sp|O32231|RNR_BACSU Ribonuclease R (RNase R) (VacB protein homolog)
gi|2635874|emb|CAB15366.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
Length = 779
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 267/695 (38%), Positives = 416/695 (59%), Gaps = 19/695 (2%)
Query: 1 MNLEKDLEKIKELLKDVKY--LTLDQITSFLEWSPKKK-KDNKIIILSWIDSGDLIMDKK 57
M E +EK+ +K+ Y LT+ ++ L + ++ K+ +++ + G ++ +
Sbjct: 1 MEKEAFMEKLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRS 60
Query: 58 HRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEK 117
R +PE +KG FAF+ ED+ + +FIP E N A++GD V+V + +
Sbjct: 61 DRYGIPEKMNLIKGKISAHAKGFAFLLPEDTSLSD-VFIPPNELNTAMNGDIVMVRLNSQ 119
Query: 118 KKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKD 176
+ EG V++I+E VVG +++NF FVIP DI+IP + A
Sbjct: 120 SSGSR-QEGTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGH 178
Query: 177 LVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQ---TKE 233
V V++T + + EG++ ILG + I ++I++ GL +F +AM+Q T +
Sbjct: 179 KVVVKLTSYPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPD 238
Query: 234 IIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKE 293
I E+ D +R++L + I+TIDGADAKDLDDAV V KL++G+YKL V IADVSHYV +
Sbjct: 239 TIDEK-DLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTEN 297
Query: 294 TVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYE 353
+ +D EA RG SVYLVDRV+PM P +SNGICSLN K ++LT SCEM I+ +G V +E
Sbjct: 298 SPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHE 357
Query: 354 VYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSID 412
+++SVIK+ RMTY DVN IL D D++L +Y + M K M L++ILR K+ RG++D
Sbjct: 358 IFQSVIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVD 417
Query: 413 FELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHE 472
F+ E KV++D D V+ V++++R EK+IE+FM+ ANETVAE +W+ + IYR HE
Sbjct: 418 FDFKEAKVLVD-DEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHE 476
Query: 473 KPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQA 531
+P+ EK+ E ++ FGY + N+HP+ Q I++ +D+ ++ +LR++KQA
Sbjct: 477 EPNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQA 536
Query: 532 RYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-----TIDNSIKPFKEADLDEI 586
+Y + + HFGL++ YTHFTSPIRRY DL+VHR++ + +D + + L +I
Sbjct: 537 KYDPQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLPDI 596
Query: 587 AQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWD 646
A+H S ER A+ AE E+ +K EYM ++GE + M++ +F E IE
Sbjct: 597 AEHTSSMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVH 656
Query: 647 ITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++ +YY FDE+++ M + VF +GD++ V
Sbjct: 657 VSFMTDDYYRFDEQHFAMIGERTGNVFRIGDEITV 691
>gi|15894003|ref|NP_347352.1| FUSION ribonuclease and ribosomal protein S1 domain [Clostridium
acetobutylicum ATCC 824]
gi|15023595|gb|AAK78692.1|AE007586_9 FUSION ribonuclease and ribosomal protein S1 domain [Clostridium
acetobutylicum ATCC 824]
Length = 730
Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats.
Identities = 269/697 (38%), Positives = 410/697 (58%), Gaps = 16/697 (2%)
Query: 8 EKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
+ I E +++ Y + + +++ + K K ++ G +I ++ +PE
Sbjct: 5 DNILEFMREQAYKPMNIKELSEVFDIGKADYKIFKKLLKDMEKEGLIIKNRTDHFGVPEK 64
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
G VKG + F FV E E++ ++IP N AL+GD V+ +I ++ S K E
Sbjct: 65 MGLVKGSLQGNAKGFGFVIPE--EDRPDVYIPSINMNGALNGDKVVAKILKESDSGKKCE 122
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITF 184
G +++I+E TVVG+ E S+NF FV+ + +D++IP + A + D+V EIT
Sbjct: 123 GEIIRILERANKTVVGVYEDSRNFGFVVADDARIPQDVFIPKGEKNGAKSGDVVVAEITV 182
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI---DY 241
W R PEGKI++I+GS I +I + L EKF E +++ E I EI +Y
Sbjct: 183 WPKKRRNPEGKIVEIIGSKGEKGVDILTIIKKHKLPEKFP-EKVERFAEGIPNEIPESEY 241
Query: 242 SNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEAR 301
R+++ ++ ++TIDG DAKDLDDAV +EKL NGN+KL V IADVS+YV+++ LD EA
Sbjct: 242 KRRRDIRDVKMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVSNYVREDNPLDKEAL 301
Query: 302 HRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKS 361
R SVYL+DRV+PM PK++SNGICSLN ++++L SC MEID G V+ +E+++S+IK+
Sbjct: 302 KRATSVYLIDRVIPMLPKKLSNGICSLNPRQDRLAMSCFMEIDPTGKVIQHEIFESIIKT 361
Query: 362 VHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
RMTY DV IL D D++ I + +Y+ K M EL+ IL K+ RG+IDF+ E K+
Sbjct: 362 NERMTYTDVTKILRDHDEETIKAFEYLYDDFKNMEELASILNKKRLLRGAIDFDFEESKI 421
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
L+E VE V +R +IIE+FM+ NET+AE YW + +YR HE+PD EK+
Sbjct: 422 TLNELGKPVE-VKPYERAVANRIIEEFMLVCNETIAEHFYWANIPFVYRVHEEPDSEKLE 480
Query: 481 TLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
NE + GY + +HPKQ Q++IE+ K K+ +V +LR+LKQARY+ E H
Sbjct: 481 RFNEFIHNLGYAVRWGSEVHPKQLQDVIEKIKGKKEETVVSTLLLRSLKQARYSPECSGH 540
Query: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKE----ADLDEIAQHISKTERV 596
FGLA+ +Y HFTSPIRRY DL++HR++ I+ + + ++D + S+ ERV
Sbjct: 541 FGLAARYYCHFTSPIRRYPDLIIHRIMKEYINGRMDEKRSKKLIGEVDYASMQSSEMERV 600
Query: 597 AMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI-NYYA 655
A +AE E +K EYM RVGE + +++ IF + IE I+ +YY
Sbjct: 601 AQEAEREVDSLKKAEYMADRVGEEFDGIISSVTNFGIFVQLANTIEGLVHISELTDDYYV 660
Query: 656 FDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+DE+ + + K++ LGD+ + + K + + EI
Sbjct: 661 YDEKYLSLVGERTKKIYKLGDEARIKVDKVSVDSHEI 697
>gi|56964768|ref|YP_176499.1| ribonuclease R [Bacillus clausii KSM-K16]
gi|56911011|dbj|BAD65538.1| ribonuclease R [Bacillus clausii KSM-K16]
Length = 777
Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats.
Identities = 255/644 (39%), Positives = 394/644 (61%), Gaps = 15/644 (2%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G ++ + +R +PE V+G + FAFV E+ EE I++P+ A++G
Sbjct: 50 EEGSIVRTRTNRYGIPEKMNLVRGRVQGHAKGFAFVLPENGEED--IYVPQGSLAGAMNG 107
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VLV + E+ + AEG+V++IIE + VVG ++ ++A V+ D + N
Sbjct: 108 DIVLVRMDERTSGAR-AEGKVIRIIERKVTEVVGEYKQFSSYALVVADDKRISADFLVVN 166
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
+ A + V IT + + E +I ++LG + I ++IY+ G+ + FS E
Sbjct: 167 GQEKGAADGHKVIATITKYPEGRFGGEAEIKEVLGHKNDPGMDILSIIYKYGIPQSFSEE 226
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
A+ Q + E E D R++L N I+TIDGADAKDLDDAV V+KLENG++ L V IA
Sbjct: 227 ALAQAANVPDEITEADLQGRRDLRNEQIVTIDGADAKDLDDAVQVKKLENGHFLLGVHIA 286
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVSHYV++ + +D EA R SVYLVDRV+PM P +SNGICSLN K ++LT SC+MEID
Sbjct: 287 DVSHYVEEGSPIDKEASDRATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCQMEID 346
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRI 403
G VVN+E+++SVI++ RMTY DVN IL + D+DL Y + M + M +L++ILR
Sbjct: 347 ENGGVVNHEIFQSVIRTTERMTYSDVNKILVEQDEDLRERYETLVPMFEAMEQLAQILRD 406
Query: 404 KKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE 463
K+F RG+IDF+ E KV+++E+ K V+L++R EK+IE+FM+AANETVAE +WL+
Sbjct: 407 KRFARGAIDFDFKEAKVLVNEE-GKATDVVLRERSVAEKLIEEFMLAANETVAEHFHWLK 465
Query: 464 LASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHK 522
L +YR HE PD +K + E ++ FGY + N +HP+ Q ++E + M++ +
Sbjct: 466 LPFVYRIHEDPDADKFNSFLEFITGFGYVVRGTANTVHPRALQALLEEISGEPEEMVISR 525
Query: 523 TILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-----DNSIKP 577
+LR++KQA+Y V + HFGL++ YTHFTSPIRRY DL+VHR++ + + D
Sbjct: 526 VMLRSMKQAKYDVHPVGHFGLSADFYTHFTSPIRRYPDLLVHRLIRTYLIKGKTDRKTTA 585
Query: 578 FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFET 637
+ L + H S+ ER A+ AE ++ +K +YM+ ++GET +++G +F E
Sbjct: 586 KWQEVLPGLTAHASEMERRAIDAERDTDSVKKAQYMEDKIGETFTGIISGVTNFGLFVEL 645
Query: 638 DEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
+ +E ++ +YY +D+++Y M S VF +GD+++V
Sbjct: 646 ENTVEGLVHVSYLTDDYYHYDQKHYAMIGERSGTVFRIGDELEV 689
>gi|15616115|ref|NP_244420.1| ribonuclease R [Bacillus halodurans C-125]
gi|10176177|dbj|BAB07272.1| ribonuclease R [Bacillus halodurans C-125]
Length = 771
Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats.
Identities = 256/645 (39%), Positives = 397/645 (61%), Gaps = 16/645 (2%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ + +R +PE ++GV + FAFV E+ E +++ + +A++G
Sbjct: 50 EKGLLVRTRSNRYGVPEKMNLLRGVVQGHAKGFAFVIPEE-EGHSDVYVSHVDLESAMNG 108
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D V+V + + EG+V++I+E + V+G + + V+ DI I N
Sbjct: 109 DRVIVRLHPHSTGTR-PEGKVIRILERGVSEVIGTYVDHQTYGLVVADDKRIPNDILIVN 167
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
+ + V V+IT + + EG++I ILG + I ++IY+ G+ + F E
Sbjct: 168 PEAQGLVDGHKVIVKITKYPEGRMSAEGEVISILGHKNDPGMDILSIIYKYGIPQAFPEE 227
Query: 227 AMQQTKEIIKEEID---YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAI 283
+QQ + I +EID NR++L + ++TIDGADAKDLDDAV+V +L NGN+KL V I
Sbjct: 228 VLQQAQNI-PDEIDAGEIKNRRDLRDEPLVTIDGADAKDLDDAVHVSRLPNGNFKLGVHI 286
Query: 284 ADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEI 343
ADVS+YVK+++ +DLEA RG SVYLVDRV+PM P +SNGICSLN + ++LT SCEMEI
Sbjct: 287 ADVSYYVKEKSPIDLEAAERGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEI 346
Query: 344 DLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILR 402
G VVN+E+++SVI++ RMTY DVN IL + +++L N Y + M + M EL+ ILR
Sbjct: 347 TRDGQVVNHEIFQSVIRTNERMTYHDVNKILVEKEEELRNRYELLVPMFEDMEELAAILR 406
Query: 403 IKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWL 462
K+F RG+IDF+ E KV++DE+ K V++++RG EK+IE+FM+AANETVAE +WL
Sbjct: 407 KKRFGRGAIDFDFKEAKVLVDEE-GKPSDVVIRERGVAEKLIEEFMLAANETVAEHFHWL 465
Query: 463 ELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVH 521
+L +YR HE PD EK+ E ++ FGY + N +HP+ Q+++E + + ++
Sbjct: 466 KLPFMYRIHEDPDSEKLGRFLEFITNFGYVVRGTANTVHPRALQKLLEEVRGEPEEQVIS 525
Query: 522 KTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-----TIDNSIK 576
+LR+++QA+Y + HFGL++ YTHFTSPIRRY DL+VHR++ +D +
Sbjct: 526 TVMLRSMQQAKYDPTSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIREYLIKGNVDEETQ 585
Query: 577 PFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE 636
L EIA+H S+ ER A+ AE E+ +K ++M+ ++GET +++G IF E
Sbjct: 586 EKWRERLPEIARHCSEMERRAVDAERETDDVKKAQFMEDKIGETFTGIISGVTNFGIFVE 645
Query: 637 TDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
+ IE ++ +YY +DE++Y M S VF +GD+++V
Sbjct: 646 LENTIEGLVHVSYLTDDYYRYDEKHYAMIGERSGNVFRIGDEIEV 690
>gi|118442907|ref|YP_877499.1| ribonuclease R [Clostridium novyi NT]
gi|118133363|gb|ABK60407.1| ribonuclease R [Clostridium novyi NT]
Length = 745
Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats.
Identities = 273/685 (39%), Positives = 406/685 (59%), Gaps = 14/685 (2%)
Query: 18 KYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIK 77
K + + ++ S + K K +I + G +I + + +PE G V G + +
Sbjct: 17 KPMDIQELAKIFGISKRDMKSFKELIKTMEKEGSIIKTRTNHYGIPEKMGLVVGRLQGHQ 76
Query: 78 NKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKN 137
+ FV +D + +F+ N A+ GD V+ ++ +++ + K EG ++++ E
Sbjct: 77 RGYGFVIPDD--DSPDVFVISSYMNGAMHGDRVVAQVLKEENNGKRREGEIIRVTERANE 134
Query: 138 TVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKI 196
T++G+ E SKNF FV+P +DI+IP A N D+V V IT W + R PEG++
Sbjct: 135 TIIGVFEASKNFGFVVPEEKRIHQDIFIPKEHTKGAKNGDVVIVNITQWPEKRRNPEGRV 194
Query: 197 IKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEID---YSNRKNLTNLSII 253
+++LG I +I + L E+F + +Q + I +EID R++L ++ ++
Sbjct: 195 VEVLGKKGEKGIDILTIIKKYKLPEEFPAK-VQSYVDNIPQEIDPEEAKGREDLRDVVMV 253
Query: 254 TIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRV 313
TIDG DAKDLDDAV +EKL+NGNY L V IADVSHYVK+++ LD EA R SVYL+++V
Sbjct: 254 TIDGEDAKDLDDAVSIEKLDNGNYLLGVHIADVSHYVKEKSPLDKEALKRATSVYLINKV 313
Query: 314 LPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAI 373
+PM PKE+SNGICSLN K ++L +C MEI+ KG VVNY + KSVIK+ RMTY DV +
Sbjct: 314 IPMLPKELSNGICSLNPKVDRLAMTCFMEINNKGKVVNYRITKSVIKTNERMTYTDVTKM 373
Query: 374 L-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKV 432
L D D+ I +Y D+Y+ K M EL +IL K+ +RG+IDFE E K+ILD DN K V
Sbjct: 374 LRDKDEATIEKYKDLYKYFKLMEELCEILYNKRISRGAIDFEFEESKIILD-DNGKPIDV 432
Query: 433 LLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYK 492
+R +IIE+FM+ NETVAE +YW ++ +YR HE PD EK+ E GY
Sbjct: 433 KPYERAIANRIIEEFMLVCNETVAEHMYWTKIPFVYRIHEDPDEEKLQKFREFAYNLGYF 492
Query: 493 IPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFT 552
I +HPK QEIIE ++ K+ +V+ +LR+LKQARY + + HFGLA+ +Y HFT
Sbjct: 493 IKPTKEVHPKALQEIIESARGKKEETVVNTLLLRSLKQARYAPQCVGHFGLAAKYYCHFT 552
Query: 553 SPIRRYSDLMVHRVLFSTIDNSI--KPFK--EADLDEIAQHISKTERVAMKAEDESVRIK 608
SPIRRY DL++HR++ ++D I K FK E +D + S ER+AM+AE E +K
Sbjct: 553 SPIRRYPDLIIHRIIKESLDGLIDEKRFKSLENKVDYASVQSSDMERLAMEAEREVDDLK 612
Query: 609 LVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENY-CMRDTD 667
EYM +++GE +V+ +F + IE I+T + Y +E++ C+
Sbjct: 613 KAEYMSEKIGEEYTGIVSSVTNFGMFVQLPNTIEGLVHISTMDDDYYVYDEDHLCLVGEK 672
Query: 668 SDKVFYLGDKVDVVLKKADLLTLEI 692
V+ LGD+V + + + DL + EI
Sbjct: 673 HKNVYRLGDEVKIKVDRVDLGSYEI 697
>gi|46908622|ref|YP_015011.1| ribonuclease R, putative [Listeria monocytogenes str. 4b F2365]
gi|47093651|ref|ZP_00231407.1| ribonuclease R, putative [Listeria monocytogenes str. 4b H7858]
gi|153168527|ref|ZP_01928370.1| hypothetical protein LMHG_01394 [Listeria monocytogenes FSL N1-017]
gi|46881894|gb|AAT05188.1| putative ribonuclease R [Listeria monocytogenes str. 4b F2365]
gi|47017986|gb|EAL08763.1| ribonuclease R, putative [Listeria monocytogenes str. 4b H7858]
gi|133726298|gb|EBA27996.1| hypothetical protein LMHG_01394 [Listeria monocytogenes FSL N1-017]
Length = 783
Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats.
Identities = 265/658 (40%), Positives = 405/658 (61%), Gaps = 17/658 (2%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
DSG ++ +K+R +LPE VKG FR + F FV E+ +E + IFIP E +A++G
Sbjct: 41 DSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEE-KEMDDIFIPPNEVKDAMNG 99
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGI-LEKSKNFAFVIPTGS--FGKDIYI 164
D V IT K+K D AEG + KI+E + +VG +E V+P FG+
Sbjct: 100 DLVFATIT-KRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEID 158
Query: 165 PNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFS 224
+ D ++ VE+T + + G + I+G + I ++I++ G+S F
Sbjct: 159 LEDGLKPVDGHKVI-VELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFP 217
Query: 225 NEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
E M+Q + + ++ D NR++L + IITIDGADAKDLDDAV V++L NGN+KL V
Sbjct: 218 EEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVH 277
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADV+HYV + + LD+EA+ RG SVYLVDRV+PM P ++SNGICSLN + ++ T SCEME
Sbjct: 278 IADVTHYVTEGSPLDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEME 337
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKIL 401
ID +G VVN+E+++S+IK+ RMTY DVN IL + D+ L +Y+ I ML++M +L++IL
Sbjct: 338 IDEEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEIL 397
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
R K+ RG+IDF+ E +V++DED + E V++++R GE +IE+FM+AANETVAE +W
Sbjct: 398 RRKREKRGAIDFDFKEARVVVDEDGHP-EAVVMRERSAGEHLIEEFMLAANETVAEHFHW 456
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLV 520
+++ IYR HE P +K+ E ++ FG + N +HP Q+++E K K M+V
Sbjct: 457 MDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVV 516
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKP-- 577
+LR+++QA+Y HFGL++ YTHFTSPIRRY DL+VHR++ I+ ++P
Sbjct: 517 STVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPET 576
Query: 578 --FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFF 635
+ +L EIA+H SK ER A++AE E+ +K E+M +VGE +++ +F
Sbjct: 577 LEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFI 636
Query: 636 ETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
E IE ++ +Y+ F + M + +++ +GD+V+V + K D+ EI
Sbjct: 637 ELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREI 694
>gi|20807463|ref|NP_622634.1| Exoribonuclease [Thermoanaerobacter tengcongensis MB4]
gi|20515989|gb|AAM24238.1| Exoribonucleases [Thermoanaerobacter tengcongensis MB4]
Length = 708
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats.
Identities = 279/705 (39%), Positives = 419/705 (59%), Gaps = 16/705 (2%)
Query: 8 EKIKELLK--DVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
E++ +LL+ D K +++I L ++K + + G + K+ + +LPE
Sbjct: 5 ERLLQLLREEDYKPSKIEEIMDMLHIDYNQRKILEATLKEMEKEGLVFKTKRGKYALPER 64
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
G V+G + F+ E+ K+ IFIP N A+DGD VLV + E + K E
Sbjct: 65 LGLVRGRIDGHPRGYGFLIPEEQGIKD-IFIPISGMNGAMDGDLVLVRVIEGAEG-KSQE 122
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITF 184
G VVKI++ T+VG EK+KNF FVIP +D++IP + A V V IT
Sbjct: 123 GEVVKILKRANTTIVGTYEKNKNFGFVIPDNKKIHQDVFIPKGEDKGAKTGMKVVVRITK 182
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYS 242
W + R PEG+II++LG + + +++ + E F E +++ +E+ +E E +
Sbjct: 183 WPEGRRSPEGEIIEVLGYKGDPGIDVKSILRSYDIPETFPKEVLKEAEELPEEIPEKEKK 242
Query: 243 NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
R +LT L +TIDG DAKDLDDAVYVE+L NGNY L V+IADVSHYVK+ T LD EA
Sbjct: 243 RRVDLTKLKFVTIDGEDAKDLDDAVYVERLPNGNYLLYVSIADVSHYVKEGTNLDKEALR 302
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RG SVY +DRV+PM P ++SNGICSLN EE+L+ + +MEI+ +G++V++++++S+I+S
Sbjct: 303 RGCSVYFLDRVIPMLPPKLSNGICSLNPGEERLSLTVKMEINTRGEIVDHDIFESIIESK 362
Query: 363 HRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RMTY V IL + D++LI YS + E K M EL+ +L K+ RGS+DF+ PE KVI
Sbjct: 363 ERMTYTSVYKILEENDEELIKRYSHLVEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVI 422
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
+DE V+ V + +R KIIE+FM+AANETVAE ++WL + +YR HE PD EK++
Sbjct: 423 VDEKGRPVDIVKV-ERNIAHKIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKLLA 481
Query: 482 LNEILSKFGYKIPNFD--NLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIS 539
N+ + GY I + +HPK Q++I + + K +V +LR+LK+ARY+ EDI
Sbjct: 482 FNKFIHNLGYHIKGVEGGEIHPKALQDLIRQVRGKSEQKVVETLLLRSLKRARYSPEDIG 541
Query: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHI----SKTER 595
H+ LA+ +YTHFTSPIRRY DL++HR++ I+ + ++ + I + I S+ ER
Sbjct: 542 HYALAAKYYTHFTSPIRRYPDLVIHRIIKEYINGKLTEKRQRHYNRILEDIAARASERER 601
Query: 596 VAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYY 654
A AE E +K VEYM +VG +++ F E D +E D+ + +YY
Sbjct: 602 AAEAAEREIEELKKVEYMADKVGNVYKGIISNVTSYGFFVELDNTVEGLVDVASLEDDYY 661
Query: 655 AFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
FD E Y + + KV+ +G +V V + D+ EI V +++
Sbjct: 662 VFDPERYVLVGERTKKVYSIGKEVYVKVAHVDVDNREIDFVLVEE 706
>gi|47096836|ref|ZP_00234417.1| ribonuclease R, putative [Listeria monocytogenes str. 1/2a F6854]
gi|47014813|gb|EAL05765.1| ribonuclease R, putative [Listeria monocytogenes str. 1/2a F6854]
Length = 783
Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats.
Identities = 264/658 (40%), Positives = 403/658 (61%), Gaps = 17/658 (2%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
DSG ++ +K+R +LPE VKG FR + F FV E+ +E + IFIP E +A++G
Sbjct: 41 DSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEE-KEMDDIFIPPNEVKDAMNG 99
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGI-LEKSKNFAFVIPTGS--FGKDIYI 164
D V IT K+K D AEG + KI+E + +VG +E V+P FG+
Sbjct: 100 DLVFATIT-KRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEID 158
Query: 165 PNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFS 224
+ D ++ VE+T + + G + I+G + I ++I++ G+S F
Sbjct: 159 LEDGLKPVDGHKVI-VELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFP 217
Query: 225 NEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
E M+Q + + ++ D NR++L + IITIDGADAKDLDDAV V++L NGN+KL V
Sbjct: 218 EEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVH 277
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADV+HYV + + LD+EA+ RG SVYLVDRV+PM P ++SNGICSLN + ++ T SCEME
Sbjct: 278 IADVTHYVTEGSPLDIEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEME 337
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKIL 401
I+ +G VVN+E+++S+IK+ RMTY DVN IL + D+ L +Y+ I ML+ M L++IL
Sbjct: 338 INQEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEIL 397
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
R K+ RG+IDF+ E +V++DED + E V++++R GE +IE+FM+AANETVAE +W
Sbjct: 398 RRKREKRGAIDFDFKEARVVVDEDGHP-EAVVMRERSAGEHLIEEFMLAANETVAEHFHW 456
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLV 520
+++ IYR HE P +K+ E ++ FG + N +HP Q+++E K K M+V
Sbjct: 457 MDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVV 516
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKP-- 577
+LR+++QA+Y HFGL++ YTHFTSPIRRY DL+VHR++ I+ ++P
Sbjct: 517 STVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPET 576
Query: 578 --FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFF 635
+ +L EIA+H SK ER A++AE E+ +K E+M +VGE +++ +F
Sbjct: 577 LEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFI 636
Query: 636 ETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
E IE ++ +Y+ F + M + +++ +GD+V+V + K D+ EI
Sbjct: 637 ELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREI 694
>gi|16804487|ref|NP_465972.1| hypothetical protein lmo2449 [Listeria monocytogenes EGD-e]
gi|16411937|emb|CAD00527.1| lmo2449 [Listeria monocytogenes]
Length = 793
Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats.
Identities = 265/658 (40%), Positives = 403/658 (61%), Gaps = 17/658 (2%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
DSG ++ +K+R +LPE VKG FR + F FV E+ +E + IFIP E +A++G
Sbjct: 51 DSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEE-KEMDDIFIPPNEVKDAMNG 109
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGI-LEKSKNFAFVIPTGS--FGKDIYI 164
D V IT K+K D AEG + KI+E + +VG +E V+P FG+
Sbjct: 110 DLVFATIT-KRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEID 168
Query: 165 PNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFS 224
+ D ++ VE+T + + G + I+G + I ++I++ G+S F
Sbjct: 169 LEDGLKPVDGHKVI-VELTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFP 227
Query: 225 NEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
E M+Q + + ++ D NR++L + IITIDGADAKDLDDAV V++L NGN+KL V
Sbjct: 228 EEVMEQVSKAPDLVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVH 287
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADV+HYV + + LD+EA+ RG SVYLVDRV+PM P ++SNGICSLN + ++ T SCEME
Sbjct: 288 IADVTHYVTEGSPLDIEAQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEME 347
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKIL 401
ID +G VVN+E+++S+IK+ RMTY DVN IL + D+ L +Y+ I ML+ M L++IL
Sbjct: 348 IDQEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEIL 407
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
R K+ RG+IDF+ E +V++DED + E V++++R GE +IE+FM+AANETVAE +W
Sbjct: 408 RRKREKRGAIDFDFKEARVVVDEDGHP-EAVVMRERSAGEHLIEEFMLAANETVAEHFHW 466
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLV 520
+++ IYR HE P +K+ E ++ FG + N +HP Q+++E K K M+V
Sbjct: 467 MDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVV 526
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKP-- 577
+LR+++QA+Y HFGL++ YTHFTSPIRRY DL+VHR++ I+ ++P
Sbjct: 527 STVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPET 586
Query: 578 --FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFF 635
+ +L EIA+H SK ER A++AE E+ +K E+M +VGE +++ +F
Sbjct: 587 LEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFI 646
Query: 636 ETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
E IE ++ +Y+ F + M + +++ +GD+V+V + K D+ EI
Sbjct: 647 ELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREI 704
>gi|116873813|ref|YP_850594.1| ribonuclease R, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742691|emb|CAK21815.1| rnr [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 793
Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats.
Identities = 274/701 (39%), Positives = 417/701 (59%), Gaps = 20/701 (2%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWI---DSGDLIMDKKHRLSLPE 64
EKI LL T +E + D K+++ + + DSG ++ +K+R +LPE
Sbjct: 8 EKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPE 67
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
VKG FR + F FV E+ +E + IFIP E +A++GD V IT K+K D A
Sbjct: 68 KMDLVKGTFRAHERGFGFVLPEE-KEMDDIFIPPNEVKDAMNGDLVFATIT-KRKGDNLA 125
Query: 125 EGRVVKIIEHRKNTVVGI-LEKSKNFAFVIPTGS--FGKDIYIPNSKIANADNKDLVAVE 181
EG + KI+E + +VG +E V+P FG+ + D ++ VE
Sbjct: 126 EGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVI-VE 184
Query: 182 ITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI--IKEEI 239
+T + + G + I+G + I ++I++ G+S F E M+Q + + +
Sbjct: 185 LTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIAFPEEVMEQVSKAPDVVDSS 244
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
D NR++L + IITIDGADAKDLDDAV V++L NGN+KL V IADV+HYV + + LD+E
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A+ RG SVYLVDRV+PM P ++SNGICSLN + ++ T SCEMEID G VVN+E+++S+I
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTISCEMEIDQDGHVVNHEIFESII 364
Query: 360 KSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPEL 418
K+ RMTY DVN IL + D+ L +Y+ I ML+ M L++ILR K+ RG+IDF+ E
Sbjct: 365 KTTERMTYTDVNDILVEKDEVLREKYAPIVPMLEAMQHLAEILRHKREKRGAIDFDFKEA 424
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
+V++DED + E V++++R GE +IE+FM+AANETVAE +W+++ IYR HE P +K
Sbjct: 425 RVVVDEDGHP-EAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDK 483
Query: 479 IVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
+ E ++ FG + N +HP Q+++E K K M+V +LR+++QA+Y
Sbjct: 484 LARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVS 543
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKP----FKEADLDEIAQHISK 592
HFGL++ YTHFTSPIRRY DL+VHR++ I+ ++P + +L EIA+H SK
Sbjct: 544 AGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETIEKRAEELPEIAEHSSK 603
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A++AE E+ +K E+M +VGE +++ +F E IE ++
Sbjct: 604 MERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKG 663
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+Y+ F + M + +++ +GD+V+V + K D+ EI
Sbjct: 664 DYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREI 704
>gi|153197245|ref|ZP_01941515.1| hypothetical protein LMRG_01799 [Listeria monocytogenes 10403S]
gi|127633296|gb|EBA22713.1| hypothetical protein LMRG_01799 [Listeria monocytogenes 10403S]
Length = 793
Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats.
Identities = 274/701 (39%), Positives = 419/701 (59%), Gaps = 20/701 (2%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWI---DSGDLIMDKKHRLSLPE 64
EKI LL T +E + D K+++ + + DSG ++ +K+R +LPE
Sbjct: 8 EKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPE 67
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
VKG FR + F FV E+ +E + IFIP E +A++GD V IT K+K D A
Sbjct: 68 KMDLVKGTFRAHERGFGFVLPEE-KEMDDIFIPPNEVKDAMNGDLVFATIT-KRKGDNLA 125
Query: 125 EGRVVKIIEHRKNTVVGI-LEKSKNFAFVIPTGS--FGKDIYIPNSKIANADNKDLVAVE 181
EG + KI+E + +VG +E V+P FG+ + D ++ VE
Sbjct: 126 EGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVI-VE 184
Query: 182 ITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI--IKEEI 239
+T + + G + I+G + I ++I++ G+S F E M+Q + + ++
Sbjct: 185 LTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDS 244
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
D NR++L + IITIDGADAKDLDDAV V++L NGN+KL V IADV+HYV + + LD+E
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A+ RG SVYLVDRV+PM P ++SNGICSLN + ++ T SCEMEID +G VVN+E+++S+I
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 360 KSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPEL 418
K+ RMTY DVN IL + D+ L +Y+ I ML+ M L++ILR K+ RG+IDF+ E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMENLAEILRRKREKRGAIDFDFKEA 424
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
+V++DED + E V++++R GE +IE+FM+AANETVAE +W+++ IYR HE P +K
Sbjct: 425 RVVVDEDGHP-EAVVIRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDK 483
Query: 479 IVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
+ E ++ FG + N +HP Q+++E K K M+V +LR+++QA+Y
Sbjct: 484 LARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVS 543
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKP----FKEADLDEIAQHISK 592
HFGL++ YTHFTSPIRRY DL+VHR++ I+ ++P + +L EIA+H SK
Sbjct: 544 AGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSK 603
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A++AE E+ +K E+M +VGE +++ +F E IE ++
Sbjct: 604 MERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKG 663
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+Y+ F + M + +++ +GD+V+V + K D+ EI
Sbjct: 664 DYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREI 704
>gi|153175701|ref|ZP_01931005.1| hypothetical protein LMIG_01522 [Listeria monocytogenes FSL N3-165]
gi|153184973|ref|ZP_01935621.1| hypothetical protein LMOG_01541 [Listeria monocytogenes J0161]
gi|153192108|ref|ZP_01939153.1| hypothetical protein LMPG_01235 [Listeria monocytogenes J2818]
gi|126942485|gb|EBA20224.1| hypothetical protein LMOG_01541 [Listeria monocytogenes J0161]
gi|127764436|gb|EBA24968.1| hypothetical protein LMPG_01235 [Listeria monocytogenes J2818]
gi|133729126|gb|EBA30824.1| hypothetical protein LMIG_01522 [Listeria monocytogenes FSL N3-165]
Length = 793
Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats.
Identities = 273/701 (38%), Positives = 419/701 (59%), Gaps = 20/701 (2%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWI---DSGDLIMDKKHRLSLPE 64
EKI LL T +E + D K+++ + + DSG ++ +K+R +LPE
Sbjct: 8 EKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPE 67
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
VKG FR + F FV E+ +E + IFIP E +A++GD V IT K+K D A
Sbjct: 68 KMDLVKGTFRAHERGFGFVLPEE-KEMDDIFIPPNEVKDAMNGDLVFATIT-KRKGDNLA 125
Query: 125 EGRVVKIIEHRKNTVVGI-LEKSKNFAFVIPTGS--FGKDIYIPNSKIANADNKDLVAVE 181
EG + KI+E + +VG +E V+P FG+ + D ++ VE
Sbjct: 126 EGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVI-VE 184
Query: 182 ITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI--IKEEI 239
+T + + G + I+G + I ++I++ G+S F E M+Q + + ++
Sbjct: 185 LTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDS 244
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
D NR++L + IITIDGADAKDLDDAV V++L NGN+KL V IADV+HYV + + LD+E
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A+ RG SVYLVDRV+PM P ++SNGICSLN + ++ T SCEMEI+ +G VVN+E+++S+I
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESII 364
Query: 360 KSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPEL 418
K+ RMTY DVN IL + D+ L +Y+ I ML+ M L++ILR K+ RG+IDF+ E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
+V++DED + E V++++R GE +IE+FM+AANETVAE +W+++ IYR HE P +K
Sbjct: 425 RVVVDEDGHP-EAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDK 483
Query: 479 IVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
+ E ++ FG + N +HP Q+++E K K M+V +LR+++QA+Y
Sbjct: 484 LARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVS 543
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKP----FKEADLDEIAQHISK 592
HFGL++ YTHFTSPIRRY DL+VHR++ I+ ++P + +L EIA+H SK
Sbjct: 544 AGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSK 603
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A++AE E+ +K E+M +VGE +++ +F E IE ++
Sbjct: 604 MERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKG 663
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+Y+ F + M + +++ +GD+V+V + K D+ EI
Sbjct: 664 DYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREI 704
>gi|51891477|ref|YP_074168.1| ribonulease R [Symbiobacterium thermophilum IAM 14863]
gi|51855166|dbj|BAD39324.1| ribonulease R [Symbiobacterium thermophilum IAM 14863]
Length = 834
Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats.
Identities = 255/696 (36%), Positives = 393/696 (56%), Gaps = 18/696 (2%)
Query: 8 EKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
E+I E +++ Y + ++ L K+ + ++ +G+++ + R PE
Sbjct: 3 ERIAEFIREQAYKPMGFAELAEALGIPEKQHARLRKVLEEMERAGEVVRTRTERYGAPER 62
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
V G + FAFV D E +FI +E A D V+ I ++D E
Sbjct: 63 MNLVVGRLQGHPRGFAFV-IPDHPGFEDVFIGREALGGAWHNDRVIARIHVPSRADGRPE 121
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITF 184
G V++I+E VVG E SK+ A+V+P +DIYIP A + + V V+I
Sbjct: 122 GEVIRILERANARVVGTFETSKHLAYVVPDDKRLPEDIYIPKGMTNGARSGEKVVVQIVR 181
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI----IKEEID 240
W D R EG++++ LG + I ++I + GL E F +Q+ +++ +E ++
Sbjct: 182 WPDARRGAEGRVVERLGMKGDVGVDIVSIIRKHGLPEAFPAAVLQEAEQVPEAVTEEALN 241
Query: 241 YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEA 300
R++L + +I+TIDG DAKDLDDAV V +L ++L V IADV+ YV + + LD EA
Sbjct: 242 EPGRRDLRDWTIVTIDGEDAKDLDDAVSVVRLAPDRWQLGVHIADVAAYVPEGSALDREA 301
Query: 301 RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK 360
RG SVYL DRV+PM P +SNGICSLN ++LT SC MEID +G+V +Y ++ SVI+
Sbjct: 302 YRRGTSVYLADRVVPMLPPRLSNGICSLNPGVDRLTLSCVMEIDGRGEVRSYAIFPSVIR 361
Query: 361 SVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
+ R+TY VNAIL+ + + M ++M EL +LR ++ RG++DF+LPE KV
Sbjct: 362 TAARLTYTRVNAILNDEPGAAAGLEHLVPMCREMAELMAVLRERRMRRGALDFDLPEAKV 421
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
L+E + VL DRG E+IIE+FM+ ANETVAE EL +YR HE P +K+
Sbjct: 422 KLNEQGWPTD-VLRVDRGIAERIIEEFMLVANETVAEHCSTRELPVLYRVHEPPASDKVA 480
Query: 481 TLNEILSKFGY--KIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDI 538
L+E L FGY ++P ++ PK Q++ +KD+ L+ +LR +KQARY+ E +
Sbjct: 481 GLSEFLQLFGYNLRMPRDGSVAPKDLQKVTLWAKDRPEENLIGSVLLRTMKQARYSEERL 540
Query: 539 SHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDN------SIKPFKEADLDEIAQHISK 592
HFGLA+ +Y HFTSPIRRY DL+VHRVL + + + ++ E + + AQH S+
Sbjct: 541 GHFGLAAEYYCHFTSPIRRYPDLVVHRVLRAHLQHPKALPAKLRSRWERKMPDAAQHCSE 600
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A +AE E++ +K EYM +R+GE +++G + + +E ++T
Sbjct: 601 RERAAAEAERETIELKKAEYMSERIGERFEGIISGVTPWGFYVQLPNTVEGLVHVSTLTD 660
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+YY F E+Y + + + F LGD+V V + + D+
Sbjct: 661 DYYHFHPEHYALMGERTRRRFRLGDRVMVRVSRVDV 696
>gi|16801605|ref|NP_471873.1| hypothetical protein lin2543 [Listeria innocua Clip11262]
gi|16415065|emb|CAC97770.1| lin2543 [Listeria innocua]
Length = 793
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 273/701 (38%), Positives = 419/701 (59%), Gaps = 20/701 (2%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWI---DSGDLIMDKKHRLSLPE 64
EKI LL T +E + D K+++ + + DSG ++ +K+R +LPE
Sbjct: 8 EKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPE 67
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
VKG FR + F FV E+ +E + IFIP E +A++GD V IT K+K D A
Sbjct: 68 KMDLVKGTFRAHERGFGFVLPEE-KEMDDIFIPPNEVKDAMNGDLVFATIT-KRKGDNLA 125
Query: 125 EGRVVKIIEHRKNTVVGI-LEKSKNFAFVIPTGS--FGKDIYIPNSKIANADNKDLVAVE 181
EG + KI+E + +VG +E V+P FG+ + D ++ VE
Sbjct: 126 EGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVI-VE 184
Query: 182 ITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI--IKEEI 239
+T + + G + I+G + I ++I++ G+S F E M+Q + + ++
Sbjct: 185 LTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIAFPEEVMEQVSKAPDVVDDS 244
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
D NR++L + IITIDGADAKDLDDAV V++L NGN+KL V IADV+HYV + + LD E
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDKE 304
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A+ RG SVYLVDRV+PM P ++SNGICSLN + ++ T SCEMEID +G VVN+E+++S+I
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 360 KSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPEL 418
K+ RMTY DVN IL + D+ L +Y+ I ML+ M L++ILR K+ RG+IDF+ E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
+V++DE+ + E+V++++R GE +IE+FM+AANETVAE +W+++ IYR HE P +K
Sbjct: 425 RVVVDEEGHP-EEVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDK 483
Query: 479 IVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
+ E ++ FG + N +HP Q+++E K K M+V +LR+++QA+Y
Sbjct: 484 LARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVS 543
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKP----FKEADLDEIAQHISK 592
HFGL++ YTHFTSPIRRY DL+VHR++ I+ ++P + +L EIA+H SK
Sbjct: 544 AGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSK 603
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A++AE E+ +K E+M +VGE +++ +F E IE ++
Sbjct: 604 MERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKG 663
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+Y+ F + M + +++ +GD+V+V + K D+ EI
Sbjct: 664 DYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREI 704
>gi|150015522|ref|YP_001307776.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
gi|149901987|gb|ABR32820.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
Length = 755
Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats.
Identities = 271/639 (42%), Positives = 382/639 (59%), Gaps = 13/639 (2%)
Query: 64 ENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG 123
E G + G + F F+ E+ +K+ +FIP N A++GD + V +T + K
Sbjct: 87 EEEGLIIGSLQSHSKGFGFLIPEEEGQKD-VFIPSNCINGAMNGDKISVRVTREDTKTKK 145
Query: 124 AEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEI 182
EG VV+IIE +VG+ E SKNF FV+ KD++I A++ D+V V+I
Sbjct: 146 REGEVVEIIERNTTRIVGVYEDSKNFGFVVSEDPRISKDVFISKKDRNGANDGDVVTVKI 205
Query: 183 TFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEID-- 240
T W +++RK EG + ++LG + I +I + GL E+FS E +Q+ E I +EID
Sbjct: 206 TKWPEENRKAEGVVTEVLGRKGDRGIDILMIIKKLGLPEEFS-EKVQKYAEGISDEIDEE 264
Query: 241 -YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
Y R++L +L ++TIDG DAKDLDDAV +EKL NGN+KL V IADV+HYVK+ + LD E
Sbjct: 265 EYKGRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVTHYVKENSPLDKE 324
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A R SVYL+DRV+PM P+++SNGICSLN + ++LT +C MEID KG VV++E+ +SVI
Sbjct: 325 ALKRATSVYLIDRVVPMLPRKLSNGICSLNPRVDRLTLTCFMEIDHKGKVVDHEIVESVI 384
Query: 360 KSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPEL 418
K+ RMTYKDV IL D D++LI Y + + K M EL ILR K+ RG+IDFE+ E
Sbjct: 385 KTNERMTYKDVTKILRDNDEELIKRYDYLVDDFKMMEELCGILRNKRTKRGAIDFEIAEA 444
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
K+ L+E +E + DR ++IE+FM+AANETVAE ++ L +YR HE PD EK
Sbjct: 445 KITLNELGKPIE-IKPYDREISNRMIEEFMLAANETVAEHMFGTHLPFVYRIHESPDEEK 503
Query: 479 IVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDI 538
+ E + GY I + + PK FQEI+E+ K K +V +LR++ QARY E
Sbjct: 504 LAKFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKNEETVVSTLLLRSMMQARYAPECS 563
Query: 539 SHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEI----AQHISKTE 594
HFGLA+ +Y HFTSPIRRY DL +HR++ + + + L I A+ S+ E
Sbjct: 564 GHFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYLHGEVDGTRINKLKNIVGYAAKQSSEME 623
Query: 595 RVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTA-INY 653
R A AE E +K EYMQ+R+G+ +++ IF E IE IT +Y
Sbjct: 624 RKAQDAEREVDDLKKAEYMQERIGQEFEGIISSVTSFGIFVELPNTIEGLVHITDLDDDY 683
Query: 654 YAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
Y F+E N + + K++ LGDKV V D+ EI
Sbjct: 684 YIFNEANLSLIGERTKKLYKLGDKVKVECVNVDITNREI 722
>gi|106893573|ref|ZP_01360698.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Clostridium sp. OhILAs]
gi|106775309|gb|EAT31868.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Clostridium sp. OhILAs]
Length = 705
Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats.
Identities = 264/700 (37%), Positives = 403/700 (57%), Gaps = 14/700 (2%)
Query: 8 EKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
EK+ E + + Y + +++ + K+++D ++ + G +I +K R PE
Sbjct: 5 EKLLEFMYETAYNPMLEEELMDVFDIERKQREDFSKLLEDMVKEGLIIKTRKKRFGTPER 64
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
G + G + + FV D E +FIP N A++ D V+ I + +E
Sbjct: 65 MGLILGKLQGHHRGYGFV-ISDRPEVPDVFIPANFMNGAMNNDRVIARINTVNSETRKSE 123
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITF 184
G V++I+ VVG+ E S+NF FV+P DI+I ++ A D V EIT
Sbjct: 124 GEVIRILSRANTEVVGVYEDSRNFGFVVPDDPRINADIFISKNETNGAKEGDKVVCEITK 183
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYS 242
W + R PEG+I +I+G + I +++ + L+ F E Q I E E +
Sbjct: 184 WPEARRNPEGRITEIIGHKNDVGTDILSVMKKYKLNPDFPEEVDMQVGNIADEVLEEEKK 243
Query: 243 NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
+R +L ++ ++TIDGADAKDLDDAV +E+L NGNYKL V IADV+HYV++ T LD EA
Sbjct: 244 HRVDLRSIQMVTIDGADAKDLDDAVSIEQLSNGNYKLGVHIADVTHYVREGTPLDKEALE 303
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RG SVYLVDRV+PM P+++SNGICSLN K ++LT S MEID +G VVN+E+ + +I
Sbjct: 304 RGTSVYLVDRVIPMLPRKLSNGICSLNPKVDRLTLSVFMEIDHRGRVVNHEIVEGLININ 363
Query: 363 HRMTYKDVNAILDGDKDLINE-YSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RM Y+DV+ IL+ D + + E Y+D EM K M +LS ILR + RG+IDF+ PE KVI
Sbjct: 364 ERMVYEDVSDILEKDDEKLKEKYADFLEMFKNMEKLSLILRKHRENRGAIDFDFPEAKVI 423
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
LD D K V +R +IIE+FM+ NETVAE YW + +YR HE P EK+
Sbjct: 424 LD-DKGKPIDVKKYERRIANRIIEEFMLVCNETVAEYFYWQNVPFVYRVHEDPSLEKLEE 482
Query: 482 LNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
N+ + FGY + + +HPK QE++++ + + L++ +LR+LK+ARY ++ H
Sbjct: 483 FNKFIHNFGYHLKGLNTEIHPKSLQELLKKLEGTKEERLINTLMLRSLKKARYAGHNLGH 542
Query: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDE----IAQHISKTERV 596
FGLA+ +Y HFTSPIRRY DL +HR++ ++ + + +L+ IA S ERV
Sbjct: 543 FGLAAQYYCHFTSPIRRYPDLEIHRIIKESLHGKLVGKRLEELNAKVPIIADQSSTRERV 602
Query: 597 AMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI-NYYA 655
A +AE E+V +K EYM ++GE +++G +F E D IE +++ + +YY
Sbjct: 603 ADEAERETVDLKKAEYMADKIGEEYEGIISGVTSFGMFVELDNTIEGLIRLSSLVDDYYI 662
Query: 656 FDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVV 695
+D E++ + K++ +GD + + + + D+ EI V
Sbjct: 663 YDSEHHLLLGERKKKIYRMGDTIKIKVSRVDIAQKEIDFV 702
>gi|23099883|ref|NP_693349.1| ribonulease R [Oceanobacillus iheyensis HTE831]
gi|22778114|dbj|BAC14384.1| ribonulease R [Oceanobacillus iheyensis HTE831]
Length = 744
Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats.
Identities = 251/640 (39%), Positives = 395/640 (61%), Gaps = 15/640 (2%)
Query: 53 IMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLV 112
+ +K+R LP+ VKG ++ FAF+ ED K+ ++I + +A++GD VLV
Sbjct: 57 VRTRKNRFGLPDKMNLVKGNIQMHAKGFAFLIAEDENSKD-VYIHANDMGSAMNGDKVLV 115
Query: 113 EITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIAN 171
+ + EG+V++I+E VVG E +++F FVI DI+IP +
Sbjct: 116 RLEKPYSDGARPEGKVIRILERAVIQVVGTYEDNRSFGFVIADDKRIPSDIFIPKANTHG 175
Query: 172 ADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQT 231
A V I+ + + EG+II ILG + I ++I++ G+ F + ++Q
Sbjct: 176 AVQGHKVIARISKYPEGRNSAEGEIIHILGHKNDPGIDILSIIHKHGIQVDFPEDVLEQA 235
Query: 232 KEIIKEEI---DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSH 288
++ EEI + + R++L N +I+TIDGADAKDLDDAV V+KL NGNYKL V IADVSH
Sbjct: 236 QQT-PEEIHPDEINGRRDLRNETIVTIDGADAKDLDDAVTVKKLSNGNYKLGVYIADVSH 294
Query: 289 YVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGD 348
YVK+E+ +D EA RG SVYLVDRV+PM P +SNGICSLN K ++LT CEMEI+ +G
Sbjct: 295 YVKEESPIDREALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLGCEMEINHQGQ 354
Query: 349 VVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFT 407
VV +E+++SVI S RMTY DVN IL D D++L ++Y + M ++M L+ ILR K+F
Sbjct: 355 VVEHEIFQSVIHSTERMTYSDVNKILVDQDEELRDKYEPLVPMFEEMENLASILREKRFG 414
Query: 408 RGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASI 467
RG+IDF+ E +V++D D + V +++R E++IE+FM+AANET+AE +W+++ I
Sbjct: 415 RGAIDFDFKEAQVLVD-DMGRPTDVAIRERSVAERLIEEFMLAANETIAEHFHWMDVPFI 473
Query: 468 YRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILR 526
+R HE+PD K+ + L+ G + ++HP++ Q++I+ + + M+V K +LR
Sbjct: 474 HRIHEEPDEGKLEKFFDFLAGLGISVKGTAGDIHPQELQKVIDSIRGEPEEMIVSKLMLR 533
Query: 527 ALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-----TIDNSIKPFKEA 581
+++QA+Y + I HFGLA+ YTHFTSPIRRY DL+VHR++ + +D+ ++
Sbjct: 534 SMQQAKYDPQSIGHFGLATDFYTHFTSPIRRYPDLIVHRLIRTYLIEKKMDSKTLKHWKS 593
Query: 582 DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHI 641
+ EIA+H S+ ER A+ AE ++ +K EYM+ ++GE +++ +F E + +
Sbjct: 594 RMPEIARHTSERERRAVDAERDTDEMKKAEYMKDKIGEEFTGLISSVTNFGMFVELENTV 653
Query: 642 ECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
E ++ +YY FDE + + + ++ +GD+VDV
Sbjct: 654 EGLIHVSYLTDDYYHFDERSQALIGERTANIYRVGDEVDV 693
>gi|146296343|ref|YP_001180114.1| ribonuclease R [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145409919|gb|ABP66923.1| ribonuclease R [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 726
Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats.
Identities = 280/704 (39%), Positives = 405/704 (57%), Gaps = 18/704 (2%)
Query: 3 LEKDLEKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRL 60
E+ ++I L+++ Y +T +I L W+ K + K I+ G ++ K+ R
Sbjct: 22 FEEKKQEIWGLIREESYHPMTFSEILDILGWNEKDELLLKRILDELEQEGKIVRTKRGRY 81
Query: 61 SLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKS 120
L E GV + F F+ D+ I+I E N A+ GD VLV+
Sbjct: 82 GLAEEMNLFVGVLEVNPRGFGFL-VPDNPNIPDIYISAENMNGAMHGDRVLVKALSLPVE 140
Query: 121 DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVA 179
K EG V +I++ VVG E SKNF FVIP DIYIP S A V
Sbjct: 141 GKRIEGYVERILKRGITKVVGRYEDSKNFGFVIPDDQRITYDIYIPKSGKNKAKTGQKVV 200
Query: 180 VEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI----I 235
VEIT + + R PEG+II+ILG I ++I + L E+F E +++ + I +
Sbjct: 201 VEITRYPEKRRNPEGRIIEILGYENAKGVDILSIIKKYELEEEFPKEVLKEVENIPDVVL 260
Query: 236 KEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETV 295
+EEI+ R +L + +I TIDG DAKD DDAV ++KL NGNY L V IADVSHYVK T
Sbjct: 261 EEEIE--GRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTH 318
Query: 296 LDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVY 355
LD EA RG SVYLVDRV+PM P ++SNGICSLN ++LTFS MEID G+VV ++++
Sbjct: 319 LDREAFRRGTSVYLVDRVIPMLPFKLSNGICSLNPNVDRLTFSVLMEIDKNGNVVKHDIF 378
Query: 356 KSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFE 414
+SVI+S RMTY +V IL + DKDL+ Y I E L+ M EL+ ILR K+ RG++DF+
Sbjct: 379 ESVIRSKERMTYTNVTKILKEEDKDLLKRYEHIREDLELMRELALILREKRMKRGALDFD 438
Query: 415 LPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKP 474
E KVILD++ ++ + + KIIE+FM+ NETVA +WL + +YR HE+P
Sbjct: 439 FDETKVILDKNGRPID-IRRYELTISNKIIEEFMLICNETVANHFFWLNVPFLYRVHEEP 497
Query: 475 DREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARY 533
D EKI E + GY + N +HPK Q I+E+S+ ++H LR+LK+ARY
Sbjct: 498 DIEKIYQFAEFIYNMGYVLKGISNKIHPKALQAILEQSRGTPEERVIHTLCLRSLKKARY 557
Query: 534 TVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADL----DEIAQH 589
E++ HFGL++ +Y HFTSPIRRY DL++HR++ + + K L EIA+
Sbjct: 558 CEENLGHFGLSTDYYCHFTSPIRRYPDLVIHRIMKDVLKGKMTEKKAERLRRKMPEIAKW 617
Query: 590 ISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT 649
S+ E++A +AE E+V +K VE+M ++G+ +++ F E + IE +++
Sbjct: 618 TSQREQIAEEAERETVELKKVEFMTDKIGQVFEGIISNVTPFGFFVELENTIEGLVRVSS 677
Query: 650 -AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+YY F+E+ Y + S KV+ +GDKV V + A++ +I
Sbjct: 678 LEDDYYVFNEKTYQLIGEKSKKVYKIGDKVKVRVISANIALRQI 721
>gi|125972670|ref|YP_001036580.1| ribonuclease R [Clostridium thermocellum ATCC 27405]
gi|125712895|gb|ABN51387.1| ribonuclease R [Clostridium thermocellum ATCC 27405]
Length = 757
Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats.
Identities = 261/656 (39%), Positives = 392/656 (59%), Gaps = 11/656 (1%)
Query: 52 LIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVL 111
+ ++K+R +PE V G + ++ + F+ +D K+ IFIP N A+ D V+
Sbjct: 52 IFKNRKNRYGVPERMNLVCGYLQGNEHGYGFLIPDDENMKD-IFIPSGGLNGAMHKDRVI 110
Query: 112 VEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIA 170
I +K DK AEG ++KI++ TVVG E SK F FV+P DI+IP +I
Sbjct: 111 ARINKKGIGDKRAEGEIIKIVKRANKTVVGTFESSKYFGFVVPDDPRISGDIFIPKDEIN 170
Query: 171 NADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQ 230
A + V EI W + R EG+II+I+G + I ++I L E F E +++
Sbjct: 171 GAKSGQKVVAEIVVWPEKRRNAEGRIIEIIGDKDEPGSDILSIIKAYNLREDFPEEVIRE 230
Query: 231 TKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSH 288
K I + E R++L +L+++TIDG DAKDLDDAV +E+L NGNY+L V IADVS+
Sbjct: 231 AKSISQTVTEDMIKGRRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSY 290
Query: 289 YVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGD 348
YVK+ + LD EA RG SVYLVDRV+PMFPKE+SNGICSLN K ++L F+ MEID G
Sbjct: 291 YVKEGSPLDKEALKRGTSVYLVDRVIPMFPKELSNGICSLNPKVDRLAFTVMMEIDKSGR 350
Query: 349 VVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFT 407
VV++E+++SVI RMTY DV IL + D+ LI Y + + M EL+ ILR K+
Sbjct: 351 VVDHEIFESVINVNERMTYTDVYKILEENDEGLIERYKYLCDTFHTMKELALILRKKRMD 410
Query: 408 RGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASI 467
RG+IDF E K++LDE +E V + IIE+FM+ NETVAE +W +
Sbjct: 411 RGAIDFNFDEAKIVLDEKGVPIE-VKRYEMTIANNIIEEFMLVCNETVAEHFFWTNTPFV 469
Query: 468 YRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRA 527
YR HE PD +KI +E + GY + + +HPK Q+++E+++ + ++ +LR+
Sbjct: 470 YRIHEDPDPDKIEAFSEFVHNLGYTLKGINKIHPKALQDVLEKARGTKEETIISTVMLRS 529
Query: 528 LKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKE----ADL 583
L++ARY+ + HFGLA+ +Y HFTSPIRRY DL++HR++ + ++ P +E + L
Sbjct: 530 LQKARYSHINSGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKEYLKGTVNPEREDLLNSRL 589
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIEC 643
EIA+ S+ ER A +AE E+ +K VE+M+K G+ +++ +F E + IE
Sbjct: 590 PEIAKLCSERERAAEEAERETEELKKVEFMKKHEGQVFEGIISNVTSFGMFVELENTIEG 649
Query: 644 SWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLD 698
I++ +YY +++++Y + S KV+ +GD V+V+L KAD+ I +D
Sbjct: 650 LVRISSLEDDYYVYNDKSYSLIGERSRKVYRIGDVVNVMLIKADVAARRIEFTIVD 705
>gi|153204022|ref|ZP_01944888.1| hypothetical protein LMSG_01661 [Listeria monocytogenes HPB2262]
gi|133734434|gb|EBA36132.1| hypothetical protein LMSG_01661 [Listeria monocytogenes HPB2262]
Length = 793
Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 268/685 (39%), Positives = 409/685 (59%), Gaps = 20/685 (2%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWI---DSGDLIMDKKHRLSLPE 64
EKI LL T +E + D K+++ + + DSG ++ +K+R +LPE
Sbjct: 8 EKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPE 67
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
VKG FR + F FV E+ +E + IFIP E +A++GD V IT K+K D A
Sbjct: 68 KMDLVKGTFRAHERGFGFVLPEE-KEMDDIFIPPNEVKDAMNGDLVFATIT-KRKGDNLA 125
Query: 125 EGRVVKIIEHRKNTVVGI-LEKSKNFAFVIPTGS--FGKDIYIPNSKIANADNKDLVAVE 181
EG + KI+E + +VG +E V+P FG+ + D ++ VE
Sbjct: 126 EGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVI-VE 184
Query: 182 ITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI--IKEEI 239
+T + + G + I+G + I ++I++ G+S F E M+Q + + ++
Sbjct: 185 LTEYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDS 244
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
D NR++L + IITIDGADAKDLDDAV V +L NGN+KL V IADV+HYV + + LD+E
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLSNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A+ RG SVYLVDRV+PM P ++SNGICSLN + ++ T SCEMEID +G VVN+E+++S+I
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 360 KSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPEL 418
K+ RMTY DVN IL + D+ L +Y+ I ML++M L++ILR K+ RG+IDF+ E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
+V++DED + E V++++R GE +IE+FM+AANETVAE +W+++ IYR HE P +K
Sbjct: 425 RVVVDEDGHP-EAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDK 483
Query: 479 IVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
+ E ++ FG + N +HP Q+++E K K M+V +LR+++QA+Y
Sbjct: 484 LARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVS 543
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKP----FKEADLDEIAQHISK 592
HFGL++ YTHFTSPIRRY DL+VHR++ I+ ++P + +L EIA+H SK
Sbjct: 544 AGHFGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSK 603
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A++AE E+ +K E+M +VGE +++ +F E IE ++
Sbjct: 604 MERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKG 663
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGD 676
+Y+ F + M + +++ +GD
Sbjct: 664 DYFKFHQNQLAMIGERTGQIYRIGD 688
>gi|89211162|ref|ZP_01189538.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Halothermothrix orenii H 168]
gi|89159258|gb|EAR78930.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Halothermothrix orenii H 168]
Length = 706
Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 265/659 (40%), Positives = 391/659 (59%), Gaps = 19/659 (2%)
Query: 34 KKKKDNKIIILSW----IDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSE 89
K +KD K I ++ + G L + + +PE + G FAF+ +D
Sbjct: 29 KIEKDQKGIFINLLKKLVKEGLLFKTQDGKYGIPEKMDLIPGRIEGNPRGFAFLIPDDPT 88
Query: 90 EKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNF 149
++ IFI E A+ D V V + ++K K EG VVKIIE + VVG LEKSK F
Sbjct: 89 -RDDIFISLENLKGAMHNDRVFVRLLSRQKG-KNREGEVVKIIERANHQVVGNLEKSKYF 146
Query: 150 AFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKN 208
FV+P D++IP ++ A V EIT W + R PEGKIIKILGS
Sbjct: 147 GFVVPDNKRIFYDVFIPKEELNGARQNQKVVAEITRWPEKKRNPEGKIIKILGSRGERGV 206
Query: 209 MIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDA 266
I+ +IY+ GL ++F E +++ K I E + D R++L + ++TIDGADAKDLDDA
Sbjct: 207 DIEGIIYQLGLPQEFDYEVLEEAKSIPLEISKGDLKGRRDLRAMPMVTIDGADAKDLDDA 266
Query: 267 VYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGIC 326
V +E++++ +L V IADVSHYVK+++ LD EA RG S+YLVDRV+PM P+ +SNGIC
Sbjct: 267 VSIEEVDDNQVRLGVHIADVSHYVKEDSALDREALKRGTSIYLVDRVIPMLPERLSNGIC 326
Query: 327 SLNEKEEKLTFSCEMEIDLKG-DVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEY 384
SLN +++LT S + L+ ++ YE+ SVIK+ +R+TY +V IL +K I +Y
Sbjct: 327 SLNPNQDRLTMSVFITYQLEPFKLMEYEIVPSVIKTNYRLTYDEVREILVHKNKAAIQKY 386
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
D LK M +L K LR ++ RGSIDF++PE+KVIL+ED V+ ++ + G E++I
Sbjct: 387 RDFVPYLKLMNKLRKRLREERVARGSIDFDMPEVKVILNEDGKPVD-IINRVHGIPEQLI 445
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E+FMIAAN VAE +YW ++ IYR H++PD ++ NE + FGY + +N +HP++
Sbjct: 446 EEFMIAANRVVAEDMYWRQIPFIYRVHDQPDHGRMADFNEFIHNFGYHLKGVNNEIHPRE 505
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
QE+++ + + L+ + +LR++KQA Y+ ++I HFGLA +YTHFTSPIRRY DLM+
Sbjct: 506 LQELLQLVEGRPEERLITRILLRSMKQAVYSDQNIGHFGLALDYYTHFTSPIRRYPDLMI 565
Query: 564 HRVLFSTIDNSIKPFK-----EADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVG 618
HR++ I P + E L E+A+H S ER AM+AE +SV +K VEYM+ + G
Sbjct: 566 HRIIKEVIKKGYLPARRQEELEEKLFEVAEHSSLQERKAMEAERDSVDLKKVEYMKDKTG 625
Query: 619 ETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGD 676
E ++ G F E D +E + +YY + EE + + + K + GD
Sbjct: 626 EEYEGIINGVTNFGFFVELDNTVEGLIHVENLEDDYYHYVEEQHALIGERTRKTYRFGD 684
>gi|153855173|ref|ZP_01996357.1| hypothetical protein DORLON_02370 [Dorea longicatena DSM 13814]
gi|149752342|gb|EDM62273.1| hypothetical protein DORLON_02370 [Dorea longicatena DSM 13814]
Length = 741
Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats.
Identities = 261/638 (40%), Positives = 393/638 (61%), Gaps = 20/638 (3%)
Query: 69 VKGVFRIIKNKFAFV--DKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEG 126
+ GVFR F FV D+ DSE+ +FI ++ A DGD V + +T K+ + EG
Sbjct: 95 LTGVFRASLKGFGFVVLDEGDSED---VFIGADDTCGAFDGDHVEIVLT-KEPEGRSREG 150
Query: 127 RVVKIIEHRKNTVVGI--LEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEIT 183
++VKI+E + VVG+ ++ K F FVIP +DI++P K A + V VE+T
Sbjct: 151 KIVKILERGLSKVVGLYRMKPGKKFGFVIPDNQRLDQDIFVPIEKSRGAVDGHKVVVELT 210
Query: 184 FWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIK--EEIDY 241
+G++ +KPEGKI++I+G + I +++ L +F ++ ++Q + + K E D
Sbjct: 211 SYGENGKKPEGKIVEIIGHLNDPGTDIMSIVKGYNLPVEFPDKVLRQAERVAKPVSEADM 270
Query: 242 SNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEAR 301
+ RK+L + ++TIDG DAKDLDDAV + K E NY L V IADV++YV++ + LD EA
Sbjct: 271 NGRKDLRDWQMVTIDGEDAKDLDDAVSLVK-EGENYILGVHIADVTNYVQENSALDREAL 329
Query: 302 HRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKS 361
RG SVYLVDRV+PM P +SNG+CSLN E++L SC M +D GDV+ +E+ ++VI
Sbjct: 330 ERGTSVYLVDRVIPMLPHTLSNGMCSLNAGEDRLALSCIMTVDPSGDVIAHEIAETVIHV 389
Query: 362 VHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
RM+Y V IL D D+ I EY ++ M ++M ELS ILR ++ RGSIDF+ PE K+
Sbjct: 390 DRRMSYTSVKKILTDHDEAEILEYKELVPMFERMQELSGILRARRKKRGSIDFDFPETKM 449
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
ILDE+ ++ + DR KIIEDFM+ ANETVAE YW EL +YRTHE PD EKI
Sbjct: 450 ILDENGKPID-IKPYDRNVATKIIEDFMLLANETVAEDYYWQELPFVYRTHEAPDEEKIR 508
Query: 481 TLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIS 539
TL ++ FGY + + + PK+ Q+++ + +D ++ + LR++KQA+YT E+
Sbjct: 509 TLATFINNFGYSMHIGVNEIRPKEIQKLLTKVEDTPEEAMISRLALRSMKQAKYTAENDG 568
Query: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK----EADLDEIAQHISKTER 595
HFGLA+++YTHFTSPIRRY DL +HR++ + + K ++ L E+A+ S+ ER
Sbjct: 569 HFGLAANYYTHFTSPIRRYPDLQIHRIIKDNLRGRMNESKIEHYQSILPEVAKRSSEMER 628
Query: 596 VAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI-NYY 654
A +AE E++++K VEYMQ +GE + +++G + ++ E IE +T ++Y
Sbjct: 629 RADEAERETIKLKKVEYMQAHIGEEFDGVISGITKWGMYVELPNTIEGLVHVTNMTDDHY 688
Query: 655 AFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
++EE Y M + KV+ LG+ + V + AD L I
Sbjct: 689 EYNEERYEMIGMHTRKVYKLGEALRVQVLDADRLMRTI 726
>gi|153813799|ref|ZP_01966467.1| hypothetical protein RUMTOR_00005 [Ruminococcus torques ATCC 27756]
gi|145848195|gb|EDK25113.1| hypothetical protein RUMTOR_00005 [Ruminococcus torques ATCC 27756]
Length = 735
Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats.
Identities = 263/702 (37%), Positives = 415/702 (59%), Gaps = 28/702 (3%)
Query: 3 LEKDLEKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRL 60
EK + + + + D Y + + +I L+ +++++ + ++ + ++ G + + K+ +
Sbjct: 37 FEKRKKVLFDFINDDLYVPMKIKEIAVVLQIPGEQRQELREVLDALVEEGKITISKRGKY 96
Query: 61 SLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKS 120
+ ++ +KG+F+ F FV ED + IFIP+E NA GD V IT +
Sbjct: 97 TC-GHTERLKGIFQANARGFGFVTPEDGTDD--IFIPEECLGNAFQGDEVEYIITSAP-A 152
Query: 121 DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVA 179
K EG++V II H +VG+ EK K+F FV P + DIYIP+ + A V
Sbjct: 153 GKRREGKIVGIISHGVTHIVGLYEKCKSFGFVRPDNCRYVNDIYIPSGREMGAVTGHKVV 212
Query: 180 VEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIK--E 237
VE+T +G + KPEGK+ +I+G + I +++ G+ +F + + Q + K
Sbjct: 213 VEMTSYGGEHMKPEGKVTQIIGHVNDPGTDILSIVMDLGIKTEFPEKVLNQAVRVGKPVS 272
Query: 238 EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLD 297
E D + RK+LTN+ ++TID DAKDLDDAV VE+ + NY L V IADV++YV++++ LD
Sbjct: 273 EADRAGRKDLTNVKMVTIDSEDAKDLDDAVSVER-DGENYVLGVHIADVTNYVQEKSALD 331
Query: 298 LEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKS 357
EA RG SVYL DRV+PM P +SNG+CSLN EE+L SC M I KG+++++E+ +S
Sbjct: 332 REALERGTSVYLADRVIPMLPHILSNGVCSLNAGEERLALSCIMTISPKGEMISHEITES 391
Query: 358 VIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPE 417
VI RM+Y V+A+L+ D+ + EY M+ M ELS+++R K+ RG+IDF+ PE
Sbjct: 392 VICVDKRMSYNKVSAVLEQDEQALREYEGFVPMIWMMKELSELIRQKRGKRGAIDFDFPE 451
Query: 418 LKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDRE 477
K++LDED +E V DR +IIEDFM+ ANETVAE +W E+ +YRTHE PD +
Sbjct: 452 TKIVLDEDGKPIE-VKPYDRNPATEIIEDFMLMANETVAEEFFWREIPFLYRTHEAPDED 510
Query: 478 KIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
+I L+ ++ FGY I + + PK+ Q+++E+ + K L+ + LR++KQARYT E+
Sbjct: 511 RIRQLSAFVNSFGYHIHVGNEIRPKEIQKLLEKVEGKPEEDLISRLTLRSMKQARYTTEN 570
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-----DNSIKPFKEADLDEIAQHISK 592
HFGLA+ +YTHFTSPIRRY DL +HR++ + +N + + E L ++A S+
Sbjct: 571 TGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKENLRGRFDENRAEHYSEL-LQQVAAQCSE 629
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE------HIECSWD 646
ER A +AE E V++K EYM+ +GE + +++G + + E + H+ WD
Sbjct: 630 RERRAEEAEREVVKLKKAEYMRDHIGEEFDGVISGVTKWGAYVELENTVEGLAHVADMWD 689
Query: 647 ITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLL 688
++Y F E++Y + + K + G KV + + AD L
Sbjct: 690 -----DHYEFYEQSYELVGEHTGKTYKPGQKVRICVTDADKL 726
>gi|110803809|ref|YP_698614.1| ribonuclease R [Clostridium perfringens SM101]
gi|110684310|gb|ABG87680.1| ribonuclease R [Clostridium perfringens SM101]
Length = 751
Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats.
Identities = 264/690 (38%), Positives = 401/690 (58%), Gaps = 12/690 (1%)
Query: 20 LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNK 79
+T+ +++ + + K K + + G + D++ R L + G + G +I +N
Sbjct: 19 MTMLELSKIFNINKAEYKQFKKVFKALEAEGLIARDEEDRFGLIDKVGLIPGKIQIHQNG 78
Query: 80 FAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTV 139
F F+ D E +FIPK N A++GD VL ++ ++ + K EG +V+I E +
Sbjct: 79 FGFL-IPDEEGVTDVFIPKNALNEAMNGDRVLGKVVKESQEGKRREGEIVRITERVNTKI 137
Query: 140 VGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRK-PEGKII 197
+GI E +K+F FV+P DI+I A ++V VEIT W D RK PEG ++
Sbjct: 138 IGIYEDNKSFGFVLPQDQRIQNDIFISKKDRNGAKKGNVVVVEITKWPDGRRKNPEGVVV 197
Query: 198 KILGSSTNSKNMIDALIYREGLSEKFSNE--AMQQTKEIIKEEIDYSNRKNLTNLSIITI 255
+ILG+ + I +I + L E+F + A + E + R +L ++ ++TI
Sbjct: 198 EILGNRGDLGLDIITVIKKYALPEEFPPQVLAFAEEISEEIPESEIKRRTDLRDVKMVTI 257
Query: 256 DGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLP 315
DG DAKDLDDAV +E+L NGNYKL V IADV+HYVK+ LD EA R SVYLVDRV+P
Sbjct: 258 DGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKRATSVYLVDRVIP 317
Query: 316 MFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL- 374
M PK++SNGICSLN + ++L +C MEID KG+VVNY +++SVIK+ RMTY DV IL
Sbjct: 318 MLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNYSIHESVIKTNERMTYTDVTKILR 377
Query: 375 DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLL 434
D DK+LI Y D+ + K M EL KIL ++ RG+IDFE E K+ILDE ++ +
Sbjct: 378 DNDKELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIILDEKGKPID-IKP 436
Query: 435 KDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP 494
+R +IIE+FM+ NET+AE + E+ +YR HE+PD EK+ GY
Sbjct: 437 YERAIANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKLQRFKNFAYSLGYLFN 496
Query: 495 NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSP 554
+ + P+ Q+++E K K M+++ +LR++ QARY+ + HFGLA+ +Y HFTSP
Sbjct: 497 FGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAGHFGLAAEYYCHFTSP 556
Query: 555 IRRYSDLMVHRVLFSTIDNSIKPFKEADL----DEIAQHISKTERVAMKAEDESVRIKLV 610
IRRY DL +HR++ I+ I P + L D ++ S+ ER+A +AE E+ +K
Sbjct: 557 IRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMERIAQEAERETNDLKKA 616
Query: 611 EYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYYAFDEENYCMRDTDSD 669
EYM+ R+GE + +++ F E +E +T+ +YY +DEEN + +
Sbjct: 617 EYMKDRIGEIFDGIISSVTGFGAFVELPNTVEGLVHVTSFRDDYYIYDEENLQLIGERTK 676
Query: 670 KVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
KV+ LG+KV V+ + ++ T E+ ++D
Sbjct: 677 KVYKLGEKVKVLCSRVEMDTREVYFEIVED 706
>gi|118725227|ref|ZP_01573870.1| ribonuclease R [Clostridium cellulolyticum H10]
gi|118665459|gb|EAV72078.1| ribonuclease R [Clostridium cellulolyticum H10]
Length = 788
Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats.
Identities = 261/706 (36%), Positives = 403/706 (57%), Gaps = 15/706 (2%)
Query: 2 NLEKDLEKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHR 59
+LE+ E+I ++D Y L ++ L+ + + ++ + G + R
Sbjct: 3 DLEERKERIVAFMRDKAYKPLLFKELRMVLDVPEEDIELFTQVMDELEEEGRVFKTHGKR 62
Query: 60 LSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKK 119
+P V G + + + F+ +D E E +FIP + N A+ D V+ + +K
Sbjct: 63 YGVPSRLNLVTGRIQGHERGYGFLIPDD-ELMEDVFIPADSLNGAMHNDRVVARVNKKSS 121
Query: 120 SDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLV 178
SD+ EG +++I++ T+VG E S +F FV+P DI++ S+ A V
Sbjct: 122 SDRKMEGEIIRILKRANTTLVGTFENSMSFGFVVPDNKRISGDIFVSKSEFHGAKKGQKV 181
Query: 179 AVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI---I 235
VEI + + R EG++I+I+G + I ++I L E F + + Q I +
Sbjct: 182 VVEILKYPEARRNAEGRVIEIIGDRNETGVDILSIIKSYNLEEDFPEDVLNQANSIGDTV 241
Query: 236 KEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETV 295
EE+ R++L L ++TIDG DAKDLDDAV +E LENGNY+L V IADV++YV + +
Sbjct: 242 TEEM-IQGRRDLRGLRMVTIDGEDAKDLDDAVSIETLENGNYRLGVHIADVTNYVTENSP 300
Query: 296 LDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVY 355
LDLEA RG SVYLVDRV+PM P+++SNGICSLN ++L+FS ++ID G N+E++
Sbjct: 301 LDLEALDRGTSVYLVDRVIPMLPRKLSNGICSLNPHVDRLSFSVMIDIDKNGKAYNHEIF 360
Query: 356 KSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFE 414
+SVI RMTY +V IL + D++LI YS + ++M EL+ ILR K+F RG+IDF+
Sbjct: 361 ESVINIDERMTYTNVYKILEENDQELIKRYSHVVSDFQKMKELALILRKKRFQRGAIDFD 420
Query: 415 LPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKP 474
E +V++DE ++ V + +IIE+FM+A NETVAE +W +YR HE P
Sbjct: 421 FDEARVVIDEKGKPID-VKRYEITIANQIIEEFMLACNETVAEHFFWTNTPFVYRIHEDP 479
Query: 475 DREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYT 534
D EKI LNE L GY I + +HP+ Q+++E+ K ++ +LR+L++ARY+
Sbjct: 480 DEEKIHNLNEFLYNLGYSIKGINKIHPRALQDLLEKVKGTRHERIISTAMLRSLQKARYS 539
Query: 535 VEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK----EADLDEIAQHI 590
E HFGLA+ +Y HFTSPIRRY DL++HR++ + + K E L EIA+
Sbjct: 540 NESTGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKLYLKGGMSEEKINHLEGILPEIAKQC 599
Query: 591 SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT- 649
S+ ER A +AE ES +K VEYM+ GE ++ +F E D IE +++
Sbjct: 600 SERERAADEAERESEDLKKVEYMKAHEGEIFEGIIANVTSFGMFIELDNTIEGLVRMSSM 659
Query: 650 AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVV 695
+YY ++E +YC+ + K++ +GD V V+L KAD+ +I +
Sbjct: 660 EDDYYNYNESHYCLVGERTRKIYRIGDSVKVILAKADVAARKIEFI 705
>gi|110800238|ref|YP_695945.1| ribonuclease R [Clostridium perfringens ATCC 13124]
gi|110674885|gb|ABG83872.1| ribonuclease R [Clostridium perfringens ATCC 13124]
Length = 751
Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats.
Identities = 263/690 (38%), Positives = 400/690 (57%), Gaps = 12/690 (1%)
Query: 20 LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNK 79
+T+ +++ + + K K + + G + D++ R L + G + G +I +
Sbjct: 19 MTMLELSKIFNINKAEYKQFKKVFKALEAEGLIARDEEDRFGLIDKVGLIPGKIQIHQKG 78
Query: 80 FAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTV 139
F F+ D E +FIPK N A++GD VL ++ ++ + K EG +V+I E V
Sbjct: 79 FGFL-IPDEEGVTDVFIPKNALNGAMNGDRVLGKVVKESQEGKRREGEIVRITERVNTKV 137
Query: 140 VGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRK-PEGKII 197
+GI E +K+F FV+P DI+I A ++V VEIT W D RK PEG ++
Sbjct: 138 IGIYEDNKSFGFVLPQDQRIQNDIFISKKDRNGAKKGNVVVVEITKWPDGRRKNPEGVVV 197
Query: 198 KILGSSTNSKNMIDALIYREGLSEKFSNE--AMQQTKEIIKEEIDYSNRKNLTNLSIITI 255
+ILG+ + I +I + L E+F + A + E + R +L ++ ++TI
Sbjct: 198 EILGNRGDLGLDIITVIKKYALPEEFPPQVLAFAEEISEEIPESEIKRRTDLRDVKMVTI 257
Query: 256 DGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLP 315
DG DAKDLDDAV +E+L NGNYKL V IADV+HYVK+ LD EA R SVYLVDRV+P
Sbjct: 258 DGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKRATSVYLVDRVIP 317
Query: 316 MFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL- 374
M PK++SNGICSLN + ++L +C MEID KG+VVN+ +++SVIK+ RMTY DV IL
Sbjct: 318 MLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNERMTYTDVTKILR 377
Query: 375 DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLL 434
D DK+LI Y D+ + K M EL KIL ++ RG+IDFE E K+ILDE ++ +
Sbjct: 378 DNDKELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIILDEKGKPID-IKP 436
Query: 435 KDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP 494
+R +IIE+FM+ NET+AE + E+ +YR HE+PD EK+ GY
Sbjct: 437 YERAIANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKLQRFKNFAYSLGYSFN 496
Query: 495 NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSP 554
+ + P+ Q+++E K K M+++ +LR++ QARY+ + HFGLA+ +Y HFTSP
Sbjct: 497 FGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAGHFGLAAEYYCHFTSP 556
Query: 555 IRRYSDLMVHRVLFSTIDNSIKPFKEADL----DEIAQHISKTERVAMKAEDESVRIKLV 610
IRRY DL +HR++ I+ I P + L D ++ S+ ER+A +AE E+ +K
Sbjct: 557 IRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMERIAQEAERETNDLKKA 616
Query: 611 EYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYYAFDEENYCMRDTDSD 669
EYM+ R+GE + +++ F E +E +T+ +YY +DEEN + +
Sbjct: 617 EYMKDRIGEIFDGIISSVTGFGAFVELPNTVEGLVHVTSFRDDYYIYDEENLQLIGERTK 676
Query: 670 KVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
KV+ LG+KV V+ + ++ T E+ ++D
Sbjct: 677 KVYKLGEKVKVLCSRVEMDTREVYFEIVED 706
>gi|27467483|ref|NP_764120.1| ribonuclease R [Staphylococcus epidermidis ATCC 12228]
gi|27315026|gb|AAO04162.1|AE016745_261 ribonuclease R [Staphylococcus epidermidis ATCC 12228]
Length = 792
Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 265/650 (40%), Positives = 399/650 (61%), Gaps = 20/650 (3%)
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
NS +KG K FAF+ ED +E + IFIP + N ALDGDTV+VEI + + KG
Sbjct: 69 NSKLIKGTLSQNKKGFAFLRPED-DEMDDIFIPPTKINRALDGDTVIVEIQKSRGEHKGK 127
Query: 125 -EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEI 182
EG V I +H VVG ++K+F FV+P +DI+IP + A + V V+I
Sbjct: 128 IEGEVKSIEKHSVTQVVGTYSEAKHFGFVLPDDKRIMQDIFIPKGQNLGAVDGHKVLVQI 187
Query: 183 TFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI--IKEEID 240
T + D PEG + ILG + I ++IY+ G+ +F ++ +Q+ +E+ + E +
Sbjct: 188 TKYADSTDNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDDVLQEAEEVPDVIEPSE 247
Query: 241 YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEA 300
R++L + ITIDGADAKDLDDA+ V+KL+NGN +L V+IADVS+YVK+ + LD EA
Sbjct: 248 IEGRRDLRDELTITIDGADAKDLDDAIAVKKLKNGNTELTVSIADVSYYVKEGSALDKEA 307
Query: 301 RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK 360
R SVYLVDRV+PM P +SNGICSLN +E++LT SC MEI+ +G+VV +E++ SVI
Sbjct: 308 YDRATSVYLVDRVIPMIPHRLSNGICSLNPEEDRLTLSCRMEINERGEVVKHEIFDSVIH 367
Query: 361 SVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELS-KILRIKKFTRGSIDFELPEL 418
S +RMTY VN I+ D D ++ ++Y D+ ML +LS +++R++K RG IDF++ E
Sbjct: 368 SNYRMTYDAVNKIITDQDSEIRSQYKDLTPMLDLAQDLSNRLIRMRK-RRGEIDFDINEA 426
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
KV+++++ E VL+++RGEGE++IE FM+AANETVAE LE+ IYR HE+P ++
Sbjct: 427 KVLVNDEGIPTE-VLMRERGEGERLIESFMLAANETVAEHFNKLEVPFIYRVHEQPKSDR 485
Query: 479 IVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
+ + ++ FG I +++HP Q I E + + M++ +LR+++QA Y +
Sbjct: 486 LRQFFDFITNFGIMIKGTGEDIHPTTLQNIQEEVEGRPEQMVISTMMLRSMQQAHYDDVN 545
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPFK----EADLDEIAQHISK 592
+ HFGL++ +YTHFTSPIRRY DL VHR++ I+NS+ + E L E+A+H S+
Sbjct: 546 LGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIENSMDKKEIRHWEETLPELAEHTSQ 605
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A++AE ++ +K EYM + +G+ +++ A +F E IE I
Sbjct: 606 RERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHIANMTD 665
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD----LLTLEIAVVPL 697
+YY FDE + KVF +GD V V + D ++ +I +PL
Sbjct: 666 DYYHFDERQMALIGERQAKVFRIGDAVKVKVTHVDVEERMIDFQIVGMPL 715
>gi|78044313|ref|YP_359161.1| ribonuclease R [Carboxydothermus hydrogenoformans Z-2901]
gi|77996428|gb|ABB15327.1| ribonuclease R [Carboxydothermus hydrogenoformans Z-2901]
Length = 724
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 270/659 (40%), Positives = 399/659 (60%), Gaps = 23/659 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G++ + K + LPE V+G + FAF+ ED EK+ +FI A+ D
Sbjct: 47 GEVYVTKAGKYGLPEQMNMVRGKIQGHPKGFAFLIPED-REKQDVFISPTNLKGAMHNDR 105
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIP-----TGSFGKDIYI 164
VLV ++ EG VVKI+E TVVG + +++ V P TG+ I I
Sbjct: 106 VLVRYLPFSDGNR-PEGEVVKILERANKTVVGSFYRRRHYGLVEPDDERITGA----III 160
Query: 165 P-NSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKF 223
P K A N + V VEIT + PEGKII+ILG + + + A+I + GL + F
Sbjct: 161 PLGKKGVKAKNGEKVVVEITAYPRKGELPEGKIIEILGDPEDQETRLKAIIKKYGLLDSF 220
Query: 224 SNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIV 281
E +++ + I +E + +R++L I+TID DAKDLDDAV ++KL NGNY+L V
Sbjct: 221 KPETIKEARAISQEIGPEELKSRRDLRGEMIVTIDDEDAKDLDDAVSLKKLPNGNYQLGV 280
Query: 282 AIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEM 341
IADVS+YV++ + LD EA RG SVYL +VLPM P E+SNGICSLN + ++LT S M
Sbjct: 281 HIADVSYYVREGSALDKEALERGTSVYLAGKVLPMLPPELSNGICSLNPRVDRLTLSVVM 340
Query: 342 EIDLKGDVVNYEVYKSVIKSVHRMTYKDV-NAILDGDKDLINEYSDIYEMLKQMLELSKI 400
EI G+VV++E++ SVIK+ R+TY V A+LD D E D+ ML++M L+ I
Sbjct: 341 EITPAGEVVSHEIFPSVIKTRARLTYTIVKKAVLDKDPKAREELGDLVPMLEEMANLAMI 400
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
LR ++ RG+IDF+LPE KVILD D +V ++ ++R ++IE+FM+ NETVAER +
Sbjct: 401 LRKRRLERGAIDFDLPEAKVILD-DKGEVVDIVRRERNIAHQLIEEFMLITNETVAERFF 459
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN--LHPKQFQEIIERSKDKETSM 518
W E+ +YR HE PD KI +L E L FGY + + HP++FQ ++E+ ++
Sbjct: 460 WQEVPFLYRIHEDPDEGKIQSLKEFLRLFGYNLKGGRDGKYHPREFQRLLEKVAGRKEER 519
Query: 519 LVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPF 578
+++ +LR++KQARY+ E I HFGLA+ +YTHFTSPIRRY DLM+HR++ ++ + P
Sbjct: 520 VINAVMLRSMKQARYSAERIWHFGLAAEYYTHFTSPIRRYPDLMIHRIIREVLEGKLTPR 579
Query: 579 KEADLDEI----AQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+EA L +I A+H S+ ER AM+AE ESV +++VE+M + G + +++G F
Sbjct: 580 REAKLAKILPKVAKHSSEMERRAMEAERESVEMRMVEFMVGKEGTEYDAIISGVTSFGFF 639
Query: 635 FETDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+ IE ++T +YY +DE++Y + + KVF LGD+V V L K + ++ EI
Sbjct: 640 VQLPNLIEGLVRVSTLEDDYYLYDEKSYALIGRRTKKVFRLGDEVRVRLVKVNTVSREI 698
>gi|57866444|ref|YP_188043.1| exoribonuclease, VacB/RNase II family [Staphylococcus epidermidis
RP62A]
gi|57637102|gb|AAW53890.1| exoribonuclease, VacB/RNase II family [Staphylococcus epidermidis
RP62A]
Length = 792
Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats.
Identities = 264/649 (40%), Positives = 394/649 (60%), Gaps = 18/649 (2%)
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
NS +KG K FAF+ ED +E + IFIP + N ALDGDTV+VEI + + KG
Sbjct: 69 NSKLIKGTLSQNKKGFAFLRPED-DEMDDIFIPPTKINRALDGDTVIVEIQKSRGEHKGK 127
Query: 125 -EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEI 182
EG V I +H VVG ++K+F FV+P +DI+IP + A + V V+I
Sbjct: 128 IEGEVKSIEKHSVTQVVGTYSEAKHFGFVLPDDKRIMQDIFIPKGQNLGAVDGHKVLVQI 187
Query: 183 TFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI--IKEEID 240
T + D PEG + ILG + I ++IY+ G+ +F ++ +Q+ +E+ + E +
Sbjct: 188 TKYADSTDNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDDVLQEAEEVPDVIEPSE 247
Query: 241 YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEA 300
R++L + ITIDGADAKDLDDA+ V+KL+NGN +L V+IADVS+YVK+ + LD EA
Sbjct: 248 IEGRRDLRDELTITIDGADAKDLDDAIAVKKLKNGNTELTVSIADVSYYVKEGSALDKEA 307
Query: 301 RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK 360
R SVYLVDRV+PM P +SNGICSLN +E++LT SC MEI+ +G+VV +E++ SVI
Sbjct: 308 YDRATSVYLVDRVIPMIPHRLSNGICSLNPEEDRLTLSCRMEINERGEVVKHEIFDSVIH 367
Query: 361 SVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELK 419
S +RMTY VN I+ D D ++ ++Y D+ ML +LS L + RG IDF++ E K
Sbjct: 368 SNYRMTYDAVNKIITDQDSEIRSQYKDLTPMLDLAQDLSNRLIHMRKRRGEIDFDINEAK 427
Query: 420 VILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKI 479
V+++++ E VL+++RGEGE++IE FM+AANETVAE LE+ IYR HE+P +++
Sbjct: 428 VLVNDEGIPTE-VLMRERGEGERLIESFMLAANETVAEHFNKLEVPFIYRVHEQPKSDRL 486
Query: 480 VTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDI 538
+ ++ FG I +++HP Q I E + + M++ +LR+++QA Y ++
Sbjct: 487 RQFFDFITNFGIMIKGTGEDIHPTTLQSIQEEVEGRPEQMVISTMMLRSMQQAHYDDVNL 546
Query: 539 SHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPFK----EADLDEIAQHISKT 593
HFGL++ +YTHFTSPIRRY DL VHR++ I+NS+ + E L E+A+H S+
Sbjct: 547 GHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIENSMDKKEIRHWEETLPELAEHTSQR 606
Query: 594 ERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI-N 652
ER A++AE ++ +K EYM + +G+ +++ A +F E IE I +
Sbjct: 607 ERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHIANMTDD 666
Query: 653 YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD----LLTLEIAVVPL 697
YY FDE + KVF +GD V V + D ++ +I +PL
Sbjct: 667 YYHFDERQMALIGERQAKVFRIGDTVKVKVTHVDVEERMIDFQIVGMPL 715
>gi|154503018|ref|ZP_02040078.1| hypothetical protein RUMGNA_00840 [Ruminococcus gnavus ATCC 29149]
gi|153796372|gb|EDN78792.1| hypothetical protein RUMGNA_00840 [Ruminococcus gnavus ATCC 29149]
Length = 713
Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats.
Identities = 268/701 (38%), Positives = 415/701 (59%), Gaps = 18/701 (2%)
Query: 3 LEKDLEKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRL 60
EK + I +L+ D Y + L +I L+ +++ + K ++ + G + + KK +
Sbjct: 11 FEKRKKVIYDLICDDLYVPMKLKEIAMLLQIPREQRNELKEVLEALEADGKIYVSKKGKY 70
Query: 61 SLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKS 120
+ Y+KG+F+ F FV +ED E+ +FIP+E N A GD V IT K
Sbjct: 71 -VKGQPQYLKGIFQANLRGFGFVLREDEED---VFIPEENINGAFQGDEVEFLIT-KSPE 125
Query: 121 DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVA 179
+ EG++V+++ H V+G+ EKSK+F FV P F KDIYIP K A V
Sbjct: 126 GRRKEGKIVRVVSHGTTKVIGLYEKSKSFGFVRPDNQRFLKDIYIPAGKEKGAMTGHKVV 185
Query: 180 VEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE-- 237
VE+T +G ++ KPEGK+++I+G + I +++ + +F + + Q + + K+
Sbjct: 186 VELTSYGGENMKPEGKVVEIIGHINDPGTDIMSIVKGYDMPVEFPEKVLNQAERVGKDVS 245
Query: 238 EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLD 297
E D + R +L + ++TIDG DAKDLDDAV + ++ENG +KL V IADV++YV++++ LD
Sbjct: 246 EADMAGRMDLRDWQMVTIDGEDAKDLDDAVSLTEVENG-WKLGVHIADVTNYVQEKSALD 304
Query: 298 LEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKS 357
EA RG SVYL DRV+PM P ++SNGICSLN E +L SC M +D KG++V++ + ++
Sbjct: 305 REALKRGTSVYLADRVIPMLPHKLSNGICSLNAGENRLALSCIMTVDKKGEIVDHVIAET 364
Query: 358 VIKSVHRMTYKDVNAILDG-DKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELP 416
VI+ RM+Y V IL+ D+ +Y + M +QM E+S +LR ++ RG+IDF+ P
Sbjct: 365 VIRVDQRMSYTSVAKILEAQDEQERQKYEKLVPMFEQMAEVSGLLRERRKKRGAIDFDFP 424
Query: 417 ELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDR 476
E K+ILDE VE + +R K+IEDFM+AANETVAE +W E+ +YRTHE P+
Sbjct: 425 ETKMILDEQGRPVE-LKPYERNVATKMIEDFMLAANETVAEEYFWREIPFLYRTHEAPEE 483
Query: 477 EKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVE 536
+K+ L+ ++ FGY I + + PK+ Q+++E+ + L+ + LR++KQARYT E
Sbjct: 484 DKVKKLSTFINNFGYHIHMGNEIRPKEIQKLLEKVEGTPQEALISRLALRSMKQARYTPE 543
Query: 537 DISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK----EADLDEIAQHISK 592
+ HFGLA+ +YTHFTSPIRRY DL +HR++ + + + E L E+A S+
Sbjct: 544 NAGHFGLAAQYYTHFTSPIRRYPDLQIHRIIKENLRGRLSDDRMAHYEKILQEVATQSSE 603
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A +AE E+V++K VEYMQ R+GE +++G + + E IE +
Sbjct: 604 MERRAEEAERETVKLKKVEYMQDRIGEEFEGVISGITKWGAYVELPNTIEGLVHVVNMKD 663
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
++Y + EE Y + V+ LG +V V + AD L I
Sbjct: 664 DHYEYREEQYELVGEHFRNVYKLGQRVRVRVLGADRLQRTI 704
>gi|18310278|ref|NP_562212.1| ribonuclease R [Clostridium perfringens str. 13]
gi|18144958|dbj|BAB81002.1| ribonuclease R [Clostridium perfringens str. 13]
Length = 751
Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats.
Identities = 265/699 (37%), Positives = 405/699 (57%), Gaps = 14/699 (2%)
Query: 13 LLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVK 70
L+K+ Y +T+ +++ + + K K + + G + D++ R L + G +
Sbjct: 10 LMKEEAYRPMTMLELSKIFNINKAEYKQFKKVFKALEAEGLIARDEEDRFGLIDKVGLIP 69
Query: 71 GVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVK 130
G +I + F F+ D E +FIPK N A++GD VL ++ ++ + K EG +V+
Sbjct: 70 GKIQIHQKGFGFL-IPDEEGVTDVFIPKNALNGAMNGDRVLGKVVKESQEGKRCEGEIVR 128
Query: 131 IIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDD 189
I E V+GI E +K+F FV+P DI+I A ++V VEIT W D
Sbjct: 129 ITERVNTKVIGIYEDNKSFGFVLPQDQRIQNDIFISKKDRNGAKKGNVVVVEITKWPDGR 188
Query: 190 RK-PEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE--AMQQTKEIIKEEIDYSNRKN 246
RK PEG +++ILG+ + I +I + L E+F + A + E + R +
Sbjct: 189 RKNPEGVVVEILGNRGDLGLDIITVIKKYALPEEFPPQVLAFAEEISEEIPESEIKRRTD 248
Query: 247 LTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNS 306
L ++ ++TIDG DAKDLDDAV +E+L NGNYKL V IADV+HYVK+ LD EA R S
Sbjct: 249 LRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKRATS 308
Query: 307 VYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMT 366
VYLVDRV+PM PK++SNGICSLN + ++L +C MEID KG+VVN+ +++SVIK+ RMT
Sbjct: 309 VYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNERMT 368
Query: 367 YKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDED 425
Y DV IL D D++LI Y D+ + K M EL KIL ++ RG+IDFE E K+ILDE
Sbjct: 369 YTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIILDEK 428
Query: 426 NNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEI 485
++ + +R +IIE+FM+ NET+AE + E+ +YR HE+PD EK+
Sbjct: 429 GKPID-IKPYERAIANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKLQRFKNF 487
Query: 486 LSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLAS 545
GY + + P+ Q+++E K K M+++ +LR++ QARY+ + HFGLA+
Sbjct: 488 AYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAGHFGLAA 547
Query: 546 SHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADL----DEIAQHISKTERVAMKAE 601
+Y HFTSPIRRY DL +HR++ I+ I P + L D ++ S+ ER+A +AE
Sbjct: 548 EYYCHFTSPIRRYPDLQIHRIIKEYINKKIDPKRAKRLLSIVDSASKQSSEMERIAQEAE 607
Query: 602 DESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYYAFDEEN 660
E+ +K EYM+ R+GE + +++ F E +E +T+ +YY +DEEN
Sbjct: 608 RETNDLKKAEYMKDRIGEIFDGIISSVTGFGAFVELPNTVEGLVHVTSFRDDYYIYDEEN 667
Query: 661 YCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
+ + KV+ LG+KV V+ + ++ T E+ ++D
Sbjct: 668 LQLIGERTKKVYKLGEKVKVLCSRVEMDTREVYFEIVED 706
>gi|76796888|ref|ZP_00779237.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Thermoanaerobacter ethanolicus ATCC 33223]
gi|76587733|gb|EAO64156.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Thermoanaerobacter ethanolicus ATCC 33223]
Length = 722
Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats.
Identities = 272/683 (39%), Positives = 407/683 (59%), Gaps = 16/683 (2%)
Query: 8 EKIKELLKDVKYL--TLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
E++ EL+++ Y +++I L +K + I+ G + K+ + +LPE
Sbjct: 7 ERLLELMREENYKPSKIEEIMKILGIDYSQKSILEKILKEMEKEGLVFKTKRGKYALPER 66
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
VKG + F+ EDS K+ IFIP N A+ DTVLV +T K+ K E
Sbjct: 67 LDLVKGKIEFHSRGYGFLIPEDSNIKD-IFIPVSGMNGAMHDDTVLVRVT-KRVDGKSEE 124
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITF 184
G VVKI++ T+VG EKSKNF FV+P +DI+IP + A V IT
Sbjct: 125 GEVVKILKRANTTIVGTYEKSKNFGFVVPDNKKIHQDIFIPKGEDKGAKTGMKVVARITK 184
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEIDYSNR 244
W + R PEG+II++LG + + ++I + E F E +++ +EI E + N+
Sbjct: 185 WPEGRRSPEGEIIEVLGYKGDPGIDVMSIIRAYDIPEVFPKEVLKEAEEIPTEIPEEENK 244
Query: 245 K--NLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
+ +LT+L +TIDG DAKDLDDAV V+KL++GNY L V+IADVSHYVK+ LD EA
Sbjct: 245 RRVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALK 304
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RG SVY +DRV+PM P ++SNGICSLN +EE+LT + +M+I+ +G+VV++E+++S+IKS
Sbjct: 305 RGCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSK 364
Query: 363 HRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RMTY +V +L + D++L Y + E K M EL+ +L K+ RGS+DF+ PE KVI
Sbjct: 365 ERMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVI 424
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
+DE ++ V+ +R +IIE+FM+ ANETVAE ++W+ + +YR HE PD EK++
Sbjct: 425 VDEKGKPID-VVKVERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKLIA 483
Query: 482 LNEILSKFGYKIPNFD--NLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIS 539
N+ + GY I + +HPK QE+I + + K +V +LR+LK+ARY+ EDI
Sbjct: 484 FNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPEDIG 543
Query: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEAD----LDEIAQHISKTER 595
H+ LA+ +YTHFTSPIRRY DL++HR++ I+ + ++ L++IA S+ ER
Sbjct: 544 HYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGKLTKKRQRHYNRILNDIALKSSERER 603
Query: 596 VAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYY 654
A AE E +K VEYM R+G +++ F E D +E D+ + +YY
Sbjct: 604 AAEAAEREIEELKKVEYMADRIGNVYKGIISNVTNYGFFVELDNTVEGLVDVASLEDDYY 663
Query: 655 AFDEENYCMRDTDSDKVFYLGDK 677
FD E Y + S KV+ +G +
Sbjct: 664 HFDPERYVLIGEKSKKVYSIGKE 686
>gi|118744881|ref|ZP_01592867.1| ribonuclease R [Geobacter lovleyi SZ]
gi|118682189|gb|EAV88602.1| ribonuclease R [Geobacter lovleyi SZ]
Length = 756
Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats.
Identities = 258/665 (38%), Positives = 382/665 (57%), Gaps = 25/665 (3%)
Query: 36 KKDNKIIILSWIDSGDLIMDKKHRLSLP--ENSGYVKGVFRIIKNKFAFVDKEDSEEKEG 93
K + K I+ + SG+++ + +R +LP +NSG V+G I ++ + FV E E
Sbjct: 38 KNELKQIVDDLVRSGEILRLRGNRYTLPGADNSGTVQGSISIHRDGYGFVKPESGGED-- 95
Query: 94 IFIPKEEFNNALDGDTVLVEITEKKKSDKGA-EGRVVKIIEHRKNTVVGILEKSKNFAFV 152
IFIP + NNAL GD V V EK +S +G EGRVV ++E + +VG L++S+ A V
Sbjct: 96 IFIPGKNINNALHGDKVSVR-AEKSRSQRGKLEGRVVAVLERANSRIVGRLQQSRRGATV 154
Query: 153 IPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMID 211
+P G +P + + A + V +E+T W R PEGK+++ILG + +
Sbjct: 155 VPEELRIGTFFTVPANAVNGAVDGQQVVIEVTAWPVGGRPPEGKVVEILGWPDDPDVEVQ 214
Query: 212 ALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYV 269
+I + L F E + + + I + + D +R +L L +TIDG AKD DDAV +
Sbjct: 215 TVIRKFDLPHTFEPETLAEAQAIPSQVGKNDLKDRVDLRKLPTVTIDGETAKDFDDAVSI 274
Query: 270 EKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLN 329
+ E N++L V+IADVSHY++ ++LD EA RG SVY DR +PM P+ +SNGICSLN
Sbjct: 275 RQ-EGHNFRLWVSIADVSHYIEPGSMLDREAYLRGTSVYFPDRCIPMLPERLSNGICSLN 333
Query: 330 EKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDV-NAILDGDKDLINEYSDIY 388
++LT + EM D +G ++ Y SVIKS R+TY V I+DGD+ ++ E +
Sbjct: 334 PHLDRLTMTAEMLFDQQGRMLESSFYSSVIKSDARLTYTKVKQVIIDGDEKVLEEDRGLA 393
Query: 389 EMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFM 448
ML QM EL+ IL+ + RGSIDF+LPE ++IL + E ++ +R ++IE+FM
Sbjct: 394 PMLLQMKELALILQTMRRQRGSIDFDLPEPEIILGL-TGQTEAIIKSERNLAHQLIEEFM 452
Query: 449 IAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEI 507
+AANE VA + E+A IYR HE PD K+ + + FG+ + D + P Q +
Sbjct: 453 LAANEAVARFVSGQEMAFIYRVHEPPDPTKLTAFRDFILPFGFTLEMQGDRVEPSAMQRL 512
Query: 508 IERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL 567
I ++ K LV+ +LR +KQARY E++ HFGLASS YTHFTSPIRRY DL+VHR+L
Sbjct: 513 ISDAEGKPEERLVNYGLLRCMKQARYAAENLKHFGLASSCYTHFTSPIRRYPDLIVHRLL 572
Query: 568 FSTIDNSI-----KPFKEAD-----LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRV 617
++ K +E D L E A+H S ERVAM+AE + V +K +++MQ R+
Sbjct: 573 RLALERKAGTLGKKGQRELDRIGSTLSEAAEHTSTRERVAMEAERDIVELKKLQFMQGRI 632
Query: 618 GETLNVMVTGFAQKKIFFETDE-HIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLG 675
G+ + + G A F E E +E I+T A + Y FDE+N+ + S + +G
Sbjct: 633 GQEFDGFIAGVAGFGCFVELSEVFVEGLVHISTLADDLYNFDEQNHALIGRRSGRTLRIG 692
Query: 676 DKVDV 680
D V V
Sbjct: 693 DPVRV 697
>gi|73663216|ref|YP_301997.1| exoribonuclease [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
gi|72495731|dbj|BAE19052.1| exoribonuclease [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 796
Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats.
Identities = 258/637 (40%), Positives = 388/637 (60%), Gaps = 16/637 (2%)
Query: 64 ENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG 123
+ S +KG K FAF+ E+ E+ + IFIP + N A+DGDTVLVE+ + K KG
Sbjct: 69 KQSKLIKGKLSQNKKGFAFLRPEE-EDMDDIFIPPTKINRAMDGDTVLVEVHQSKGEHKG 127
Query: 124 A-EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVE 181
EG V I H VVG ++++F FV+P +DI+IP + A + V V+
Sbjct: 128 KLEGEVKTIETHSVTQVVGTYSEARHFGFVLPDDKRIMQDIFIPKGQNLGAVDGHKVLVQ 187
Query: 182 ITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEIDY 241
IT + D PEG + ILG + I ++IY+ G+ +F + + + E + + I+
Sbjct: 188 ITKYADGTDNPEGIVSAILGHKNDPGVDILSIIYQHGIEIEFPDNVLAEA-EAVPDHIEP 246
Query: 242 SN---RKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDL 298
S R++L + ITIDGADAKDLDDA+ V+KL NG+ +L V+IADVS+YV +++ LD
Sbjct: 247 SQIEGRRDLRDELTITIDGADAKDLDDAISVKKLSNGHTQLTVSIADVSYYVTEDSALDK 306
Query: 299 EARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSV 358
EA R SVYLVDRV+PM P +SNGICSLN + ++LT SC+MEID +GDVV++E++ SV
Sbjct: 307 EAYSRATSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCQMEIDERGDVVDHEIFDSV 366
Query: 359 IKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPE 417
I S +RMTY +VN I+ D D + N+YS++ ML +LS+ L + RG IDF++ E
Sbjct: 367 IHSNYRMTYDEVNEIITDQDTETRNQYSEVTPMLDLAQDLSQRLIHMRRRRGEIDFDINE 426
Query: 418 LKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDRE 477
KV+++E+ + V ++ RGEGE++IE FM+AANET+AE LE+ IYR HE+P E
Sbjct: 427 AKVLVNEEGIPTD-VEMRQRGEGERLIESFMLAANETIAEHFDRLEVPFIYRVHEQPKSE 485
Query: 478 KIVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVE 536
++ + ++ FG I +++HP Q+I + + + M++ +LR+++QARY
Sbjct: 486 RLRQFFDFVTNFGLMIKGTGEDIHPSTLQKIQQEVEGQPEQMVISTMMLRSMQQARYDDV 545
Query: 537 DISHFGLASSHYTHFTSPIRRYSDLMVHR-----VLFSTIDNSIKPFKEADLDEIAQHIS 591
++ HFGL++ +YTHFTSPIRRY DL+VHR ++ ++D K EA L EIA+H S
Sbjct: 546 NLGHFGLSAEYYTHFTSPIRRYPDLIVHRLIRKYIIEQSMDRKEKNKWEALLPEIAEHTS 605
Query: 592 KTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI 651
+ ER A++AE ++ +K EYM + +GE +++ A +F E IE ++
Sbjct: 606 QRERRAIEAERDTDELKKAEYMVQHIGEEFEGIISSVANFGMFIELPNTIEGMVHVSNMT 665
Query: 652 -NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+YY FDE M KVF +GD V + + D+
Sbjct: 666 DDYYHFDERQMAMIGERQAKVFRIGDPVQIKVINVDV 702
>gi|114845546|ref|ZP_01455937.1| Ribonuclease R [Thermoanaerobacter ethanolicus X514]
gi|114804427|gb|EAU56277.1| Ribonuclease R [Thermoanaerobacter ethanolicus X514]
Length = 722
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 271/683 (39%), Positives = 406/683 (59%), Gaps = 16/683 (2%)
Query: 8 EKIKELLKDVKYL--TLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
E++ EL+++ Y +++I L +K + I+ G + K+ + +LPE
Sbjct: 7 ERLLELMREENYKPSKIEEIMKILGIDYSQKSILEKILKEMEKEGLVFKTKRGKYALPER 66
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
VKG + F+ EDS K+ IFIP N A+ DTVLV +T K+ K E
Sbjct: 67 LDLVKGKIEFHSRGYGFLIPEDSNIKD-IFIPVSGMNGAMHDDTVLVRVT-KRVDGKSEE 124
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITF 184
G VVKI++ T+VG EKSKNF FV+P +DI+IP + A V IT
Sbjct: 125 GEVVKILKRANTTIVGTYEKSKNFGFVVPDNKKIHQDIFIPKGEDKGAKTGMKVVARITK 184
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEIDYSNR 244
W + R PEG+II++LG + + ++I + E F E +++ +EI E + +
Sbjct: 185 WPEGRRSPEGEIIEVLGYKGDPGIDVMSIIRAYDIPEVFPKEVLKEAEEIPTEIPEEEKK 244
Query: 245 K--NLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
+ +LT+L +TIDG DAKDLDDAV V+KL++GNY L V+IADVSHYVK+ LD EA
Sbjct: 245 RRVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALK 304
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RG SVY +DRV+PM P ++SNGICSLN +EE+LT + +M+I+ +G+VV++E+++S+IKS
Sbjct: 305 RGCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSK 364
Query: 363 HRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RMTY +V +L + D++L Y + E K M EL+ +L K+ RGS+DF+ PE KVI
Sbjct: 365 ERMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVI 424
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
+DE ++ V+ +R +IIE+FM+ ANETVAE ++W+ + +YR HE PD EK++
Sbjct: 425 VDEKGKPID-VVKVERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKLIA 483
Query: 482 LNEILSKFGYKIPNFD--NLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIS 539
N+ + GY I + +HPK QE+I + + K +V +LR+LK+ARY+ EDI
Sbjct: 484 FNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPEDIG 543
Query: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEAD----LDEIAQHISKTER 595
H+ LA+ +YTHFTSPIRRY DL++HR++ I+ + ++ L++IA S+ ER
Sbjct: 544 HYALATQYYTHFTSPIRRYPDLIIHRIIKEYINGKLTKKRQRHYNRILNDIALKSSERER 603
Query: 596 VAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYY 654
A AE E +K VEYM R+G +++ F E D +E D+ + +YY
Sbjct: 604 AAEAAEREIEELKKVEYMADRIGNVYKGIISNVTNYGFFVELDNTVEGLVDVASLEDDYY 663
Query: 655 AFDEENYCMRDTDSDKVFYLGDK 677
FD E Y + S KV+ +G +
Sbjct: 664 HFDPERYVLIGEKSKKVYSIGKE 686
>gi|57650122|ref|YP_185720.1| exoribonuclease, VacB/RNase II family [Staphylococcus aureus subsp.
aureus COL]
gi|87161515|ref|YP_493465.1| ribonuclease R [Staphylococcus aureus subsp. aureus USA300]
gi|88194563|ref|YP_499359.1| ribonuclease R, putative [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151220961|ref|YP_001331783.1| ribonuclease R [Staphylococcus aureus subsp. aureus str. Newman]
gi|57284308|gb|AAW36402.1| exoribonuclease, VacB/RNase II family [Staphylococcus aureus subsp.
aureus COL]
gi|87127489|gb|ABD22003.1| ribonuclease R [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87202121|gb|ABD29931.1| ribonuclease R, putative [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150373761|dbj|BAF67021.1| ribonuclease R [Staphylococcus aureus subsp. aureus str. Newman]
Length = 790
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 267/658 (40%), Positives = 384/658 (58%), Gaps = 20/658 (3%)
Query: 56 KKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEIT 115
KKH S S +KG K FAF+ ED E+ E IFIP + N ALDGDTV+VEI
Sbjct: 62 KKH--SYRGQSKLIKGTLSQNKKGFAFLRPED-EDMEDIFIPPTKINRALDGDTVIVEIH 118
Query: 116 EKKKSDKGA-EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANAD 173
+ K KG EG V I +H VVG ++++F FVIP +DI+IP + A
Sbjct: 119 QSKGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAV 178
Query: 174 NKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKE 233
+ V V+IT + D PEG I ILG + I ++IY+ G+ +F +E +Q+ +
Sbjct: 179 DGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEA 238
Query: 234 IIK--EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVK 291
+ E + R +L + ITIDGADAKDLDDA+ V+KL NGN +L V+IADVS+YV
Sbjct: 239 VPDHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVT 298
Query: 292 KETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVN 351
+ + LD EA R SVYLVDRV+PM P +SNGICSLN ++LT SC MEID G VV
Sbjct: 299 EGSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDASGRVVK 358
Query: 352 YEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGS 410
+E++ SVI S +RMTY VN I+ + D ++ +Y++I ML +LS L + RG
Sbjct: 359 HEIFDSVIHSDYRMTYDAVNQIITEKDPNIREQYNEITPMLDLAQDLSNRLIQMRKRRGE 418
Query: 411 IDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRT 470
IDF++ E KV+++ED + V L+ RGEGE++IE FM+ ANETVAE L++ IYR
Sbjct: 419 IDFDISEAKVLVNEDGIPTD-VQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRV 477
Query: 471 HEKPDREKIVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALK 529
HE+P +++ + ++ FG I +++HP Q++ E + + M++ +LR+++
Sbjct: 478 HEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQ 537
Query: 530 QARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----STIDNSIKPFKEADLD 584
QA Y ++ HFGL++ +YTHFTSPIRRY DL VHR++ ++DN E L
Sbjct: 538 QAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLP 597
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECS 644
E+A+H SK ER A++AE ++ +K EYM + +G+ +V+ A +F E IE
Sbjct: 598 ELAEHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGM 657
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD----LLTLEIAVVPL 697
I +YY F+E + KVF +GD V V + D L+ +I +PL
Sbjct: 658 VHIANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPL 715
>gi|68056142|ref|ZP_00540274.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Exiguobacterium sibiricum 255-15]
gi|68007234|gb|EAM86504.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Exiguobacterium sibiricum 255-15]
Length = 785
Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats.
Identities = 270/709 (38%), Positives = 411/709 (57%), Gaps = 25/709 (3%)
Query: 8 EKIKELL-KDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIM-DKKHRLSLPEN 65
E+I E++ + + L++DQ+T LE + + I L+ ++ LI + ++
Sbjct: 5 ERILEVIGAEERPLSIDQLTKKLELTDTAQFKELIRTLNELEDEALIARTRSNKYGTLAQ 64
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
G V G + + F FV ED + IF+P E N +GD VLV++ + E
Sbjct: 65 IGQVAGKISVHQRGFGFVSPEDGSAGD-IFLPAPELGNVYNGDRVLVKVFAESNGGDRRE 123
Query: 126 GRVVKIIEHRKNTVVGILEKSK----NFAFVIPTGSFGKDIYIP---NSKIANADNKDLV 178
G+++KI+ VG K + A++ P S K ++P N A + V
Sbjct: 124 GKLLKILSRGPADFVGTFVSPKGRIESIAYIEPDDS--KLTFLPVVANEDTLGAVDGHKV 181
Query: 179 AVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE- 237
IT + D K+++I+G + I +++++ G++ FS+ A+ + +I +
Sbjct: 182 LARITKYPDGRYAGTAKVLQIIGHKNDPGVDILSIVHKHGINVDFSDAAIAEANDIPDQI 241
Query: 238 -EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVL 296
E D R +L +TIDGADAKDLDDAV+V+KL NGNY+L V IADVSHYVK+++ L
Sbjct: 242 DEKDIVGRVDLRKEVTVTIDGADAKDLDDAVHVKKLSNGNYELGVHIADVSHYVKEDSPL 301
Query: 297 DLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYK 356
D EAR RG SVYLVDRV+PM P +SNGICSLN ++LT SC MEID G VVN+E+ +
Sbjct: 302 DEEARERGTSVYLVDRVIPMIPHRLSNGICSLNPHVDRLTLSCIMEIDQNGAVVNHEILQ 361
Query: 357 SVIKSVHRMTYKDVNAILD-GDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFEL 415
SVIK+ RMTY DV I++ D++++ +Y D+ QM EL+ ILR ++ RG+I+F+
Sbjct: 362 SVIKTTERMTYTDVRKIIEREDEEVVAKYHDLVANFDQMAELAAILRERRSRRGAINFDF 421
Query: 416 PELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPD 475
PE KV+++E+ K +++L++R EK+IE+FM+AANETVAE + +L +YR H++P
Sbjct: 422 PEAKVLVNEE-GKTSEIILRERSVAEKLIEEFMLAANETVAEHVQHQKLPFMYRIHDEPK 480
Query: 476 REKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYT 534
E++ T + ++ FG + +++ PK Q I+ + + +V +LR+L+QA+Y
Sbjct: 481 AERLDTFFKFIANFGINVERKGESVAPKTLQSILNAVEGEPEEAVVSTVMLRSLQQAKYD 540
Query: 535 VEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEAD-----LDEIAQH 589
VE I HFGL++ YTHFTSPIRRY DLMVHR+L I + K K D L EIA H
Sbjct: 541 VEPIGHFGLSTDFYTHFTSPIRRYPDLMVHRLLREYIIFNDKSQKTQDRYSAILPEIADH 600
Query: 590 ISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT 649
SK ER A+ AE E+ +K EYM++ +GET +V+G +F E IE I
Sbjct: 601 ASKRERRAVDAERETNALKKAEYMEQHIGETFEGVVSGVTNFGMFVELPNTIEGLVHIQA 660
Query: 650 AI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLK--KADLLTLEIAVV 695
++Y +DE NY + + + F +GD V++ + D T++ AVV
Sbjct: 661 MTDDFYRYDEANYQLMGERTKQQFRIGDVVEIKVTGVNIDEKTIDFAVV 709
>gi|82750488|ref|YP_416229.1| ribonuclease R [Staphylococcus aureus RF122]
gi|82656019|emb|CAI80424.1| ribonuclease R [Staphylococcus aureus RF122]
Length = 790
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 268/658 (40%), Positives = 383/658 (58%), Gaps = 20/658 (3%)
Query: 56 KKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEIT 115
KKH S S +KG K FAF+ ED ++ E IFIP + N ALDGDTV+VEI
Sbjct: 62 KKH--SSKGQSKLIKGTLSQNKKGFAFLRPED-KDMEDIFIPPTKINRALDGDTVIVEIH 118
Query: 116 EKKKSDKGA-EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANAD 173
+ K KG EG V I +H VVG ++++F FVIP +DI+IP + A
Sbjct: 119 QSKGEHKGKIEGEVKSIEKHSVTQVVGTYSQARHFGFVIPDDKRIMQDIFIPKGQSLGAV 178
Query: 174 NKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKE 233
+ V V+IT + D PEG I ILG + I ++IY+ G+ +F +E +Q+ +
Sbjct: 179 DGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEA 238
Query: 234 IIK--EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVK 291
E+ + R +L N ITIDGADAKDLDDA+ V+KL NGN +L V+IADVS+YV
Sbjct: 239 TPDNIEDSEIKGRHDLRNELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVT 298
Query: 292 KETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVN 351
+ + LD EA R SVYLVDRV+PM P +SNGICSLN ++LT SC MEID G VV
Sbjct: 299 EGSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDDSGRVVK 358
Query: 352 YEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGS 410
+E++ SVI S +RMTY VN I+ + D + +Y++I ML +LS L + RG
Sbjct: 359 HEIFDSVIHSDYRMTYDAVNQIITENDPTIREQYNEITPMLDLAQDLSNRLIQMRKRRGE 418
Query: 411 IDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRT 470
IDF++ E KV+++ED + V L+ RGEGE++IE FM+ ANETVAE L++ IYR
Sbjct: 419 IDFDISEAKVLVNEDGIPTD-VQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRV 477
Query: 471 HEKPDREKIVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALK 529
HE+P +++ + ++ FG I +++HP Q++ E + + M++ +LR+++
Sbjct: 478 HEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQ 537
Query: 530 QARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----STIDNSIKPFKEADLD 584
QA Y ++ HFGL++ +YTHFTSPIRRY DL VHR++ ++DN E L
Sbjct: 538 QAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLP 597
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECS 644
E+A+H SK ER A++AE ++ +K EYM + +G+ +V+ A +F E IE
Sbjct: 598 ELAEHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGM 657
Query: 645 WDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD----LLTLEIAVVPL 697
I N YY F+E + KVF +GD V V + D L+ +I +PL
Sbjct: 658 VHIANMTNDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPL 715
>gi|21282471|ref|NP_645559.1| ribonuclease R [Staphylococcus aureus subsp. aureus MW2]
gi|49485652|ref|YP_042873.1| putative ribonuclease R [Staphylococcus aureus subsp. aureus
MSSA476]
gi|21203908|dbj|BAB94607.1| ribonuclease R [Staphylococcus aureus subsp. aureus MW2]
gi|32170296|emb|CAD91948.1| ribonuclease R [Staphylococcus aureus]
gi|32170298|emb|CAD91949.1| ribonuclease R [Staphylococcus aureus]
gi|32170300|emb|CAD91950.1| ribonuclease R [Staphylococcus aureus]
gi|32170302|emb|CAD91951.1| ribonuclease R [Staphylococcus aureus]
gi|32170304|emb|CAD91952.1| ribonuclease R [Staphylococcus aureus]
gi|32170306|emb|CAD91953.1| ribonuclease R [Staphylococcus aureus]
gi|32170308|emb|CAD91954.1| ribonuclease R [Staphylococcus aureus]
gi|32170310|emb|CAD91955.1| ribonuclease R [Staphylococcus aureus]
gi|32170312|emb|CAD91956.1| ribonuclease R [Staphylococcus aureus]
gi|32170314|emb|CAD91957.1| ribonuclease R [Staphylococcus aureus]
gi|32170316|emb|CAD91958.1| ribonuclease R [Staphylococcus aureus]
gi|32170318|emb|CAD91959.1| ribonuclease R [Staphylococcus aureus]
gi|49244095|emb|CAG42521.1| putative ribonuclease R [Staphylococcus aureus subsp. aureus
MSSA476]
Length = 790
Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 267/658 (40%), Positives = 384/658 (58%), Gaps = 20/658 (3%)
Query: 56 KKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEIT 115
KKH S +S +KG K FAF+ ED E+ E IFIP + N ALDGDTV+VEI
Sbjct: 62 KKH--SSKGHSKLIKGTLSQNKKGFAFLRPED-EDMEDIFIPPTKINRALDGDTVIVEIH 118
Query: 116 EKKKSDKGA-EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANAD 173
+ K KG EG V I +H VVG ++++F FVIP +DI+IP + A
Sbjct: 119 QSKGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAV 178
Query: 174 NKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKE 233
+ V V+IT + D PEG I ILG + I ++IY+ G+ +F +E +Q+ +
Sbjct: 179 DGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEA 238
Query: 234 IIK--EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVK 291
+ E + R +L + ITIDGADAKDLDDA+ V+KL NGN +L V+IADVS+YV
Sbjct: 239 VPDHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVT 298
Query: 292 KETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVN 351
+ + LD EA R SVYLVDRV+PM P +SNGICSLN ++LT SC MEID G VV
Sbjct: 299 EGSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDASGRVVK 358
Query: 352 YEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGS 410
+E++ SVI S +RMTY VN I+ + D ++ +Y +I ML +LS L + RG
Sbjct: 359 HEIFDSVIHSDYRMTYDAVNQIITEKDPNIREQYKEITPMLDLAQDLSNRLIQMRKRRGE 418
Query: 411 IDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRT 470
IDF++ E KV+++ED + V L+ RGEGE++IE FM+ ANETVAE L++ IYR
Sbjct: 419 IDFDINEAKVLVNEDGIPTD-VQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRV 477
Query: 471 HEKPDREKIVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALK 529
HE+P +++ + ++ FG I +++HP Q++ E + + M++ +LR+++
Sbjct: 478 HEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQ 537
Query: 530 QARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----STIDNSIKPFKEADLD 584
QA Y ++ HFGL++ +YTHFTSPIRRY DL VHR++ ++DN E L
Sbjct: 538 QAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLP 597
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECS 644
E+A+H SK ER A++AE ++ +K EYM + +G+ +V+ A +F E IE
Sbjct: 598 ELAEHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGM 657
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD----LLTLEIAVVPL 697
I +YY F+E + KVF +GD V V + D L+ +I +PL
Sbjct: 658 VHIANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPL 715
>gi|70727106|ref|YP_254020.1| ribonuclease R [Staphylococcus haemolyticus JCSC1435]
gi|68447830|dbj|BAE05414.1| ribonuclease R [Staphylococcus haemolyticus JCSC1435]
Length = 792
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 263/650 (40%), Positives = 391/650 (60%), Gaps = 20/650 (3%)
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
NS +KG K FAF+ + + E+ + IFIP + N ALDGD V+VEI + K KG
Sbjct: 70 NSKLIKGTLSQNKKGFAFL-RPELEDMDDIFIPPTKINRALDGDIVIVEIQKSKGEHKGK 128
Query: 125 -EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEI 182
EG V I +H VVG ++K+F FVIP +DI+IP + A + V V+I
Sbjct: 129 IEGEVKSIEKHSVTQVVGTYSEAKHFGFVIPDDKRIMQDIFIPKGQSLGAVDGHKVLVQI 188
Query: 183 TFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--- 239
T + D PEG I ILG + I ++IY+ G+ +F + +++ E + EEI
Sbjct: 189 TKYADGTDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDNVLKEA-EAVPEEIKPD 247
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
+ R +L + ITIDGADAKDLDDA+ V+KL+NG+ +L V+IADVS+YVK+++ LD E
Sbjct: 248 EIKGRTDLRDELTITIDGADAKDLDDAISVKKLKNGHTELTVSIADVSYYVKEDSELDKE 307
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A R SVYLVDRV+PM P +SNGICSLN + ++LT SC MEI+ +G+VVN++++ SVI
Sbjct: 308 AYDRATSVYLVDRVIPMIPHRLSNGICSLNPEVDRLTLSCRMEINERGEVVNHDIFDSVI 367
Query: 360 KSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPEL 418
S +RMTY VN I+ + D+ +Y +I ML +LS L + RG IDF++ E
Sbjct: 368 HSNYRMTYDAVNQIITEKAPDVRKQYQEITPMLDLAQDLSNRLIQMRKRRGEIDFDISEA 427
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
KV+++ + + V+L++RGEGE++IE FM+AANETVAE LE+ IYR HE+P ++
Sbjct: 428 KVLVNNEGLPTD-VVLRERGEGERLIESFMLAANETVAEHFNKLEVPFIYRVHEQPKSDR 486
Query: 479 IVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
+ + ++ FG I +++HP Q I E + + M++ +LR+++QA Y +
Sbjct: 487 LRQFFDFITNFGIMIKGTGEDIHPSTLQSIQEEVEGRSEQMVISTMMLRSMQQAHYDDTN 546
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPFK----EADLDEIAQHISK 592
+ HFGL++ +YTHFTSPIRRY DL VHR++ IDNS+ + E L E+A+H S+
Sbjct: 547 LGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIDNSMNNKELHKWEDKLPELAEHTSQ 606
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI- 651
ER A++AE ++ +K EYM + +G+ +V+ A +F E IE I+
Sbjct: 607 RERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHISNMTD 666
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD----LLTLEIAVVPL 697
+YY FDE + KVF +GD+V V + D ++ +I +PL
Sbjct: 667 DYYQFDERQMALIGERQAKVFRIGDQVTVKVTHVDVDERMIDFQIVGMPL 716
>gi|154484690|ref|ZP_02027138.1| hypothetical protein EUBVEN_02407 [Eubacterium ventriosum ATCC
27560]
gi|149734538|gb|EDM50455.1| hypothetical protein EUBVEN_02407 [Eubacterium ventriosum ATCC
27560]
Length = 706
Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats.
Identities = 254/654 (38%), Positives = 383/654 (58%), Gaps = 26/654 (3%)
Query: 44 LSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNN 103
+S G ++ K+H Y++G F F FV+ E +E FIP+++ N
Sbjct: 56 ISITKKGKYVITKEH---------YIEGYFISNDRGFGFVEVEGQDED--YFIPEDKVNG 104
Query: 104 ALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDI 162
A D VL+++ E ++ K E RVVK++ H VVG +KSK F +V+P +DI
Sbjct: 105 AFHHDMVLIQV-EDSQTGKRKEARVVKVLSHEIQQVVGYFQKSKTFGYVLPDNQKIAQDI 163
Query: 163 YIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEK 222
YIP A V V+IT +G + RKPEGKII+I+G + I +++ + +
Sbjct: 164 YIPGKDTMGAVTGHKVVVQITDYGTNGRKPEGKIIEIIGHINDPGVDIISIVKNYDIPTE 223
Query: 223 FSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F E M+Q + I E E D RK++ + +TIDG DAKDLDDAV + K E+G Y L
Sbjct: 224 FPEEVMKQIENIPDEVPEEDKVGRKDIRDWQTVTIDGEDAKDLDDAVTLTK-EDGIYTLG 282
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVSHYV + + LD EA RG SVYLVDRV+PM P ++SNGICSLN ++L SC
Sbjct: 283 VHIADVSHYVTENSPLDKEAVKRGTSVYLVDRVIPMIPHKLSNGICSLNHDVDRLALSCI 342
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSK 399
M+I+ KG+++++E+ +S+I RMTY V I+ D + + + Y D+ M + M ELS+
Sbjct: 343 MKINEKGEIIDHEIVESLINVNERMTYTAVKEIIVDKNPETMERYKDLVPMFELMAELSE 402
Query: 400 ILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERI 459
ILR +++ RG+IDFE PE K+ L++ + + DR + KIIEDFM+AANET+AE
Sbjct: 403 ILRERRYKRGAIDFEFPECKIKLNQGGKPIS-IEPYDRNKATKIIEDFMLAANETIAEDF 461
Query: 460 YWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSM 518
YW +L +YR HE+PD EK+ L ++ FGY + + + +HPK+ Q++++ +
Sbjct: 462 YWRQLPFVYRNHEEPDMEKVSQLTTFINNFGYSVKMSKEQIHPKELQKLLKNIEGTPEEA 521
Query: 519 LVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS---- 574
L+ + LR++K+A YT E HFGLA+ +Y HFTSPIRRY DL +HR++ ++N
Sbjct: 522 LISRITLRSMKRAEYTPECKGHFGLAAKYYCHFTSPIRRYPDLQIHRIIKEALNNKLTDK 581
Query: 575 -IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
I F L E+ ++ S TER A AE ++ ++K EYM +GE +++G I
Sbjct: 582 HISHFNHI-LPEVTKNCSITERRADDAERDTEKLKKAEYMMGYIGEEYEGVISGVTNFGI 640
Query: 634 FFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
+ E +E ++ + ++Y +DE Y M + K + LG KV + ++ AD
Sbjct: 641 YVELPNTVEGLIHVSNMMDDHYIYDENTYSMTGERTKKTYKLGQKVKIRVEAAD 694
>gi|15926457|ref|NP_373990.1| ribonuclease R [Staphylococcus aureus subsp. aureus N315]
gi|57634620|ref|NP_371304.2| ribonuclease R [Staphylococcus aureus subsp. aureus Mu50]
gi|148267240|ref|YP_001246183.1| ribonuclease R [Staphylococcus aureus subsp. aureus JH9]
gi|150393289|ref|YP_001315964.1| ribonuclease R [Staphylococcus aureus subsp. aureus JH1]
gi|156979108|ref|YP_001441367.1| hypothetical protein SAHV_0777 [Staphylococcus aureus subsp. aureus
Mu3]
gi|13700671|dbj|BAB41968.1| ribonuclease R [Staphylococcus aureus subsp. aureus N315]
gi|32170258|emb|CAD91929.1| ribonuclease R [Staphylococcus aureus]
gi|32170260|emb|CAD91930.1| ribonuclease R [Staphylococcus aureus]
gi|32170262|emb|CAD91931.1| ribonuclease R [Staphylococcus aureus]
gi|32170264|emb|CAD91932.1| ribonuclease R [Staphylococcus aureus]
gi|32170266|emb|CAD91933.1| ribonuclease R [Staphylococcus aureus]
gi|32170268|emb|CAD91934.1| ribonuclease R [Staphylococcus aureus]
gi|32170270|emb|CAD91935.1| ribonuclease R [Staphylococcus aureus]
gi|32170272|emb|CAD91936.1| ribonuclease R [Staphylococcus aureus]
gi|32170274|emb|CAD91937.1| ribonuclease R [Staphylococcus aureus]
gi|32170276|emb|CAD91938.1| ribonuclease R [Staphylococcus aureus]
gi|32170278|emb|CAD91939.1| ribonuclease R [Staphylococcus aureus]
gi|32170280|emb|CAD91940.1| ribonuclease R [Staphylococcus aureus]
gi|32170282|emb|CAD91941.1| ribonuclease R [Staphylococcus aureus]
gi|32170284|emb|CAD91942.1| ribonuclease R [Staphylococcus aureus]
gi|32170286|emb|CAD91943.1| ribonuclease R [Staphylococcus aureus]
gi|32170288|emb|CAD91944.1| ribonuclease R [Staphylococcus aureus]
gi|32170290|emb|CAD91945.1| ribonuclease R [Staphylococcus aureus]
gi|32170292|emb|CAD91946.1| ribonuclease R [Staphylococcus aureus]
gi|32170294|emb|CAD91947.1| ribonuclease R [Staphylococcus aureus]
gi|32170320|emb|CAD91960.1| ribonuclease R [Staphylococcus aureus]
gi|46395522|dbj|BAB56942.2| ribonuclease R [Staphylococcus aureus subsp. aureus Mu50]
gi|147740309|gb|ABQ48607.1| ribonuclease R [Staphylococcus aureus subsp. aureus JH9]
gi|149945741|gb|ABR51677.1| ribonuclease R [Staphylococcus aureus subsp. aureus JH1]
gi|156721243|dbj|BAF77660.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
Length = 790
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 266/658 (40%), Positives = 383/658 (58%), Gaps = 20/658 (3%)
Query: 56 KKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEIT 115
KKH S +S +KG K FAF+ ED E+ E IFIP + N ALDGDTV+VEI
Sbjct: 62 KKH--SSKGHSKLIKGTLSQNKKGFAFLRPED-EDMEDIFIPPTKINRALDGDTVIVEIH 118
Query: 116 EKKKSDKGA-EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANAD 173
+ K KG EG V I +H VVG ++++F FVIP +DI+IP + A
Sbjct: 119 QSKGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAV 178
Query: 174 NKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKE 233
+ V V+IT + D PEG I ILG + I ++IY+ G+ +F +E +Q+ +
Sbjct: 179 DGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEA 238
Query: 234 IIK--EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVK 291
+ E + R +L + ITIDGADAKDLDDA+ V+KL NGN +L V+IADVS+YV
Sbjct: 239 VPDHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVT 298
Query: 292 KETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVN 351
+++ LD EA R SVYLVDRV+PM P +SNGICSLN ++LT SC MEID G VV
Sbjct: 299 EDSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPHVDRLTLSCRMEIDASGRVVK 358
Query: 352 YEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGS 410
+E++ SVI S +RMTY VN I+ + D ++ +Y +I ML +LS L + RG
Sbjct: 359 HEIFDSVIHSDYRMTYDAVNQIITEKDPNIREQYKEITPMLDLAQDLSNRLIQMRKRRGE 418
Query: 411 IDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRT 470
IDF++ E KV+++E + V L+ RGEGE++IE FM+ ANETVAE L + IYR
Sbjct: 419 IDFDISEAKVLVNEVGIPTD-VQLRQRGEGERLIESFMLIANETVAEHFSKLNVPFIYRV 477
Query: 471 HEKPDREKIVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALK 529
HE+P +++ + ++ FG I +++HP Q++ E + + M++ +LR+++
Sbjct: 478 HEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQ 537
Query: 530 QARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----STIDNSIKPFKEADLD 584
QA Y ++ HFGL++ +YTHFTSPIRRY DL VHR++ ++DN E L
Sbjct: 538 QAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLP 597
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECS 644
E+A+H SK ER A++AE ++ +K EYM + +G+ +V+ A +F E IE
Sbjct: 598 ELAEHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGM 657
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD----LLTLEIAVVPL 697
I +YY F+E + KVF +GD V V + D L+ +I +PL
Sbjct: 658 VHIANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPL 715
>gi|126654057|ref|ZP_01725884.1| ribonuclease R [Bacillus sp. B14905]
gi|126589462|gb|EAZ83608.1| ribonuclease R [Bacillus sp. B14905]
Length = 731
Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats.
Identities = 242/603 (40%), Positives = 364/603 (60%), Gaps = 13/603 (2%)
Query: 89 EEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKN 148
E + +FIP E N A++GD VL+ + ++ D+ EG V K++E + + VG + ++
Sbjct: 2 EGMDDVFIPPHEINGAINGDIVLIRVLKESFGDR-REGTVTKVVERGQTSFVGTFQANRG 60
Query: 149 FAFVI-PTGSFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSK 207
F FV+ DI+I A + V VE+ W +D + G I KILG +
Sbjct: 61 FGFVVLDDKKLPMDIFIAKGDTLGAVDGHKVVVEVATWPEDLKSATGYITKILGHKNDPG 120
Query: 208 NMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDD 265
I +++Y+ + +F +E + + + + E D R++L + +I+TIDGADAKDLDD
Sbjct: 121 VDILSILYKHDIPPEFPDEVIAAAQRVPDDITEADLVGRRDLRHETIVTIDGADAKDLDD 180
Query: 266 AVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGI 325
AV V K +G YKL V IADVS+YV + +V+DLEA R SVYL DRV+PM P +SNGI
Sbjct: 181 AVTVIKNVDGTYKLGVHIADVSYYVTQGSVIDLEAYDRATSVYLTDRVIPMIPHRLSNGI 240
Query: 326 CSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEY 384
CSLN + ++LT SCEM ID G+V+++E+++SVIK+ RMTYKDV IL + D+ LI Y
Sbjct: 241 CSLNPQVDRLTLSCEMIIDASGNVISHEIFQSVIKTTERMTYKDVYKILEEQDEALIKRY 300
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ M K M ELS ILR K+ +RG+IDF+ E KVI++E+ V+ + +++R EK+I
Sbjct: 301 EPLVPMFKNMAELSGILRRKRESRGAIDFDFKESKVIVNEEGWPVD-IEIRERTVAEKLI 359
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
EDFM+AANETVAE +W+ + IYR HE P EK+ E ++ FG I N +HPK
Sbjct: 360 EDFMLAANETVAEHFHWMNVPFIYRIHEDPKPEKLQRFFEFVTNFGILIKGTGNTVHPKA 419
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q++++ + ++ +LR+++QA+Y E + HFGL++ YTHFTSPIRRY DL+V
Sbjct: 420 LQDVLKAIEGMPEEPVISTMLLRSMQQAKYYPESLGHFGLSTDFYTHFTSPIRRYPDLIV 479
Query: 564 HRVLFSTI---DNSIKPFKE--ADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVG 618
HR++ + + D S + + +DEIA H S+ ER A+ AE ++ +K +YM ++G
Sbjct: 480 HRLIRTYLINKDTSRETVAQWGMAMDEIADHTSERERRAVDAERDTDALKKAQYMSDKIG 539
Query: 619 ETLNVMVTGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDK 677
E +V+ IF E IE I+ +YY FD+ M +++ F +GD+
Sbjct: 540 EEFEGIVSSITNFGIFVELPNTIEGLVHISNMTDDYYRFDDRQMIMIGERTNRQFRIGDE 599
Query: 678 VDV 680
V V
Sbjct: 600 VTV 602
>gi|114565845|ref|YP_752999.1| Exoribonuclease II [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114336780|gb|ABI67628.1| Exoribonuclease II [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 705
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 261/649 (40%), Positives = 372/649 (57%), Gaps = 17/649 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G+++ + + LPE VKG+ I K F + + + E +F+ ++ N A+ D
Sbjct: 50 GEIVKTRAGKFGLPEMMNLVKGIIHISKKGFGVLVPDKAGLGE-VFVYGKKLNGAMHNDR 108
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFG-KDIYIPNSK 168
V+V I EK + + EG V++I+ +VG K ++ V+P S IY+ S+
Sbjct: 109 VMVRIQEKGYNGQRPEGTVIRILARNTRELVGTFTKGRHLLQVVPDDSRQIYPIYVKASR 168
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A D V V I+ W + D+ EGKI+++LG + + L + GL +F + M
Sbjct: 169 KWKAKEGDKVLVRISSWPERDKVAEGKIVEVLGRKGEAGVDLKVLAKKHGLRLEFPDNVM 228
Query: 229 QQTK----EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
++ + E+ EEI S R++L ++TIDG DAKDLDDAV +EK G YKL V IA
Sbjct: 229 EEARNVAVEVNAEEI--SRRRDLREWRMVTIDGEDAKDLDDAVSIEKTSKG-YKLGVHIA 285
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVSHYVK++ LD EA RG SVYL+D+VLPM P E+SN ICSLN + E+L SC M+ID
Sbjct: 286 DVSHYVKEDCKLDREAFKRGTSVYLIDKVLPMLPVELSNNICSLNPQVERLAISCIMDID 345
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRI 403
G VV+YE+ KSVI+ RMTY DVN IL D L Y ++ E M ELS ILR
Sbjct: 346 SWGQVVDYEIVKSVIQINERMTYSDVNRILADNPPALKERYGELVEDFFLMKELSDILRR 405
Query: 404 KKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE 463
+ RG +DF+ PE KVI+DE+ +E V +RG GE +IEDFMI ANE VAE ++ L
Sbjct: 406 SRLNRGMLDFDFPESKVIVDEEGFPLE-VKRAERGPGEMLIEDFMIKANEVVAEHLHNLG 464
Query: 464 LASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKT 523
L +YR HEKPD E I LN++L+ FG+KI + P FQ I+ K + ++
Sbjct: 465 LPVLYRVHEKPDEEAISELNKVLAVFGHKIKG-HKVSPMLFQGILADIKGQPEEQMISLM 523
Query: 524 ILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADL 583
ILR++K A Y E HFGLAS +Y HFTSPIRRY DL+VHRVL S +D + K++ L
Sbjct: 524 ILRSMKHASYLPEPRGHFGLASPYYCHFTSPIRRYPDLIVHRVLSSLLDGGMTTRKKSSL 583
Query: 584 DE----IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE 639
++ + S E A +AE E + +K +YM + VG+ + ++ F +
Sbjct: 584 EKKMTIYGEQSSLQEMKAEEAERELLDVKKAQYMSQFVGDEFSARISSVQAFGFFVALEN 643
Query: 640 HIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+E I++ A +YY F + Y +R S + F +GD+V V L + D+
Sbjct: 644 TVEGLVHISSIADDYYLFSDRTYTLRGRHSGRKFAIGDQVRVQLVRVDV 692
>gi|49483038|ref|YP_040262.1| putative ribonuclease R [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49241167|emb|CAG39845.1| putative ribonuclease R [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 790
Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats.
Identities = 263/658 (39%), Positives = 384/658 (58%), Gaps = 20/658 (3%)
Query: 56 KKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEIT 115
KKH S S +KG K FAF+ +D E+ E IFIP + N ALDGDTV+VEI
Sbjct: 62 KKH--SSKGQSKLIKGTLSQNKKGFAFLRPKD-EDMEDIFIPPTKINRALDGDTVIVEIH 118
Query: 116 EKKKSDKGA-EGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANAD 173
+ K KG EG V I +H VVG ++++F FVIP +DI+IP + A
Sbjct: 119 QSKGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAV 178
Query: 174 NKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKE 233
+ V V+IT + D PEG I ILG + I ++IY+ G+ +F +E +++ +
Sbjct: 179 DGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLEEAEA 238
Query: 234 IIK--EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVK 291
+ E + R +L + ITIDGADAKDLDDA+ V+KL NG+ +L V+IADVS+YV
Sbjct: 239 VPDHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGHTQLTVSIADVSYYVT 298
Query: 292 KETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVN 351
+++ LD EA R SVYLVDRV+PM P +SNGICSLN ++LT SC MEID G VV
Sbjct: 299 EDSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPHVDRLTLSCRMEIDASGRVVK 358
Query: 352 YEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGS 410
+E++ SVI S +RMTY VN I+ + D ++ +Y +I ML +LS L + RG
Sbjct: 359 HEIFDSVIHSDYRMTYDAVNQIITEKDPNIREQYKEITPMLDLAQDLSNRLIQMRKRRGE 418
Query: 411 IDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRT 470
IDF++ E KV+++ED + V L+ RGEGE++IE FM+ ANETVAE L++ IYR
Sbjct: 419 IDFDISEAKVLVNEDGIPTD-VQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRV 477
Query: 471 HEKPDREKIVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHKTILRALK 529
HE+P +++ + ++ FG I +++HP Q++ E + + M++ +LR+++
Sbjct: 478 HEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQ 537
Query: 530 QARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----STIDNSIKPFKEADLD 584
QA Y ++ HFGL++ +YTHFTSPIRRY DL VHR++ ++DN E L
Sbjct: 538 QAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLP 597
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECS 644
E+A+H SK ER A+++E ++ +K EYM + +G+ +V+ A +F E IE
Sbjct: 598 ELAEHTSKRERRAIESERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGM 657
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD----LLTLEIAVVPL 697
I +YY F+E + KVF +GD V V + D L+ +I +PL
Sbjct: 658 VHIANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPL 715
>gi|150391304|ref|YP_001321353.1| ribonuclease R [Alkaliphilus metalliredigens QYMF]
gi|149951166|gb|ABR49694.1| ribonuclease R [Alkaliphilus metalliredigens QYMF]
Length = 706
Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats.
Identities = 247/697 (35%), Positives = 403/697 (57%), Gaps = 14/697 (2%)
Query: 8 EKIKELLKDVKYLTL--DQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
+KI E +++ Y + +++ L+ + + KD ++ G +I +K R +PE
Sbjct: 5 DKIVEFMRESAYSPMLENELMESLDINKGESKDFSKLLDEMEQEGFIIKTRKKRFGVPER 64
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
G + G + F F+ ++ EE + +F+P N AL D V+ ++ K +E
Sbjct: 65 MGLIVGRLQGHVKGFGFIISDNPEEDD-VFVPANLMNGALHNDRVIARVSVPTTQSKRSE 123
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITF 184
G +++I+ +VG E S++F FV+ DI++ S+ A N D V IT
Sbjct: 124 GDIIRILVRANEEIVGTYEDSRSFGFVVADDVKINVDIFVSKSEANGAKNGDKVVCAITK 183
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEIDYS-- 242
W R PEGK+I+I+G ++ I A++ + L+ F + K++ E D
Sbjct: 184 WPGARRNPEGKVIEIIGHKDDAGTDILAIMRKHKLNPNFPQAVEAEIKDLPDEVPDSEKK 243
Query: 243 NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
+R +L +L ++TIDGADAKDLDDAV +E+LE GNY+L V IADV+HYV++ET LD EA
Sbjct: 244 DRVDLRDLQMVTIDGADAKDLDDAVSIERLEEGNYRLGVHIADVTHYVREETALDKEALA 303
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
R SVYLVDRV+PM P+++SNG+CSLN K ++L S ME+ G VV +E+ +S+IK+
Sbjct: 304 RATSVYLVDRVIPMLPRKLSNGLCSLNPKVDRLALSVFMEVASNGKVVKHEIVESIIKTD 363
Query: 363 HRMTYKDVNAILD-GDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RM Y++V+ IL+ D +L +Y + + + M +L+ ILR ++ RG+IDF+ E KV+
Sbjct: 364 ERMIYEEVSDILEHDDAELKQKYDYLVQDFQWMEKLATILRGRREERGAIDFDFDESKVL 423
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
LD D + V +R +IIE+FM+ NETVAE YW+ + IYR HE P E++
Sbjct: 424 LD-DKGRPYDVKKLERRVANRIIEEFMLVCNETVAEHFYWMNIPFIYRVHEDPSAERLEE 482
Query: 482 LNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
N+ + FGY + +HPK Q+++++ K K+ +++ +LR+LK+ARY+ + + H
Sbjct: 483 FNKFIHNFGYHLKGLTTEIHPKALQDLLKKIKGKKEETVINTLMLRSLKKARYSAQSLGH 542
Query: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDE----IAQHISKTERV 596
FGLA+ +Y+HFTSPIRRY DL +HR++ ++ + + L + +A+ S ERV
Sbjct: 543 FGLAADYYSHFTSPIRRYPDLEIHRIIKESLKGKLSQKRIDKLSQTVPVVAEQSSTRERV 602
Query: 597 AMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT-AINYYA 655
A +AE E+ +K EYM +R+GE +++G +F E IE +++ A +YY
Sbjct: 603 ADEAERETEDLKKCEYMAERIGEIHEGIISGVTSFGMFVELGNTIEGMIRLSSLADDYYI 662
Query: 656 FDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+ E++ + + K F +GD++ + + K + EI
Sbjct: 663 YHSESHSLIGERTKKTFRIGDEIKIQVAKVTVAQREI 699
>gi|145953657|ref|ZP_01802665.1| hypothetical protein CdifQ_04003660 [Clostridium difficile
QCD-32g58]
Length = 675
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 274/659 (41%), Positives = 386/659 (58%), Gaps = 20/659 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G + KK ++ P GY G F K F FV+ D E + +FI + N A+
Sbjct: 13 EDGYICFTKKGKIVSPNQMGYFVGKFVSHKKGFGFVE-SDVEYTQDLFISSDNINGAMHN 71
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D V+ EI +K AEGR+VK+I+ +VG + SK F FV P F KDIYIP
Sbjct: 72 DRVMAEIVVPATEEKRAEGRIVKVIKREITRIVGTFQSSKTFGFVTPDNKKFTKDIYIPK 131
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
+ A + D V EIT W +DRKPEGKII+ILG ID++I GL E+F +
Sbjct: 132 KHFSGAVDNDKVVCEITVWPQEDRKPEGKIIEILGQKGERGVEIDSIIREHGLPEEFPKK 191
Query: 227 AMQQTK----EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
+Q+ + EI +EEI R++L +L+I TIDG DAKDLDDA+ +E L NGN+KL V
Sbjct: 192 VLQEAEAVAVEIPQEEI--KRRRDLRDLNIFTIDGDDAKDLDDAISIEVLPNGNFKLGVH 249
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADV+HYV+++ LD EA R SVYLVD+V+PM PK +SNG+CSLN E+KLT S ME
Sbjct: 250 IADVTHYVREKNKLDKEALKRATSVYLVDKVIPMLPKTLSNGVCSLNPFEDKLTLSIFME 309
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKD-LINEYSDIYEMLKQMLELSKIL 401
ID KG+VV +E+ +SVI S RMTY +V+ IL+ D + L + + E K L+KIL
Sbjct: 310 IDHKGNVVKHEICESVINSKARMTYTEVSDILEKDDEKLKKTFEHVVEDFKNAEILAKIL 369
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLK--DRGEGEKIIEDFMIAANETVAERI 459
++ RG+IDF PE K+IL N K E V +K +R KIIE+FM+ +NET+AE
Sbjct: 370 MSRREKRGAIDFNFPEAKIIL---NGKGEVVDIKPYERRISNKIIEEFMLISNETIAEHF 426
Query: 460 YWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSM 518
YW+ + +YR HE P EK+ L++ +S FGY I + + +HPK Q IIE+ K K+
Sbjct: 427 YWMGIPFVYRIHETPSLEKMEELSKFISTFGYIIKGDKEEVHPKALQGIIEKIKGKKEEG 486
Query: 519 LVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPF 578
+ +LR+LKQA+Y+ E HFGLA+ Y HFTSPIRRY DL +HR++ +++N I
Sbjct: 487 AISTIMLRSLKQAKYSPECSGHFGLAAKFYCHFTSPIRRYPDLQIHRIIKESLNNKISGK 546
Query: 579 KEADLDEIAQHI----SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
++ L I + S+ ER A AE + YM+ +VG+ +V+ IF
Sbjct: 547 RQEQLTTIVDYASVQSSEKERKAELAERDVHDFYKALYMKDKVGQEFEGVVSSVTSFGIF 606
Query: 635 FETDEHIECSWDITTA-INYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
E D IE + +YY +DE +Y + + K + +GD V + ++ ++ EI
Sbjct: 607 VELDNTIEGLIRLANMNDDYYIYDESSYSVLGERTKKSYKIGDLVKIKVESVNVDFKEI 665
>gi|126700783|ref|YP_001089680.1| ribonuclease R [Clostridium difficile 630]
gi|115252220|emb|CAJ70060.1| ribonuclease R [Clostridium difficile 630]
Length = 711
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 273/659 (41%), Positives = 386/659 (58%), Gaps = 20/659 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G + KK ++ P GY G F K F FV+ D E + +FI + N A+
Sbjct: 49 EDGYICFTKKGKIVSPNQMGYFVGKFVSHKKGFGFVE-SDVEYTQDLFISSDNINGAMHN 107
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D V+ EI +K AEGR+VK+I+ +VG + SK F FV P F KDIYIP
Sbjct: 108 DRVMAEIVVPATEEKRAEGRIVKVIKREITRIVGTFQSSKTFGFVTPDNKKFTKDIYIPK 167
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
+ A + D V EIT W +DRKPEGKII+ILG ID++I GL E+F +
Sbjct: 168 KHFSGAVDNDKVVCEITVWPQEDRKPEGKIIEILGQKGERGVEIDSIIREHGLPEEFPKK 227
Query: 227 AMQQTK----EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
+Q+ + EI +EEI R++L +L+I TIDG DAKDLDDA+ +E L NGN+KL V
Sbjct: 228 VLQEAEAVAVEIPQEEI--KRRRDLRDLNIFTIDGDDAKDLDDAISIEVLPNGNFKLGVH 285
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADV+HYV+++ LD EA R SVYLVD+V+PM PK +SNG+CSLN E+KLT S ME
Sbjct: 286 IADVTHYVREKNKLDKEALKRATSVYLVDKVIPMLPKTLSNGVCSLNPFEDKLTLSIFME 345
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKD-LINEYSDIYEMLKQMLELSKIL 401
ID KG+VV +E+ +SVI S RMTY +V+ IL+ D + L + + E K L++IL
Sbjct: 346 IDHKGNVVKHEICESVINSKARMTYTEVSDILEKDDEKLKKTFEHVVEDFKNAEILARIL 405
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLK--DRGEGEKIIEDFMIAANETVAERI 459
++ RG+IDF PE K+IL N K E V +K +R KIIE+FM+ +NET+AE
Sbjct: 406 MSRREKRGAIDFNFPEAKIIL---NGKGEVVDIKPYERRISNKIIEEFMLISNETIAEHF 462
Query: 460 YWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSM 518
YW+ + +YR HE P EK+ L++ +S FGY I + + +HPK Q IIE+ K K+
Sbjct: 463 YWMGIPFVYRIHETPSLEKMEELSKFISTFGYIIKGDKEEVHPKALQGIIEKIKGKKEEG 522
Query: 519 LVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPF 578
+ +LR+LKQA+Y+ E HFGLA+ Y HFTSPIRRY DL +HR++ +++N I
Sbjct: 523 AISTIMLRSLKQAKYSPECSGHFGLAAKFYCHFTSPIRRYPDLQIHRIIKESLNNKISGK 582
Query: 579 KEADLDEIAQHI----SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
++ L I + S+ ER A AE + YM+ +VG+ +V+ IF
Sbjct: 583 RQEQLTTIVDYASVQSSEKERKAELAERDVHDFYKALYMKDKVGQEFEGVVSSVTSFGIF 642
Query: 635 FETDEHIECSWDITTA-INYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
E D IE + +YY +DE +Y + + K + +GD V + ++ ++ EI
Sbjct: 643 VELDNTIEGLIRLANMNDDYYIYDESSYSVLGERTKKSYKIGDLVKIKVESVNVDFKEI 701
>gi|156865771|gb|EDO59202.1| hypothetical protein CLOL250_00261 [Clostridium sp. L2-50]
Length = 728
Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats.
Identities = 255/704 (36%), Positives = 398/704 (56%), Gaps = 18/704 (2%)
Query: 8 EKIKELLKDVKY--LTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPEN 65
E I L+ D Y L ++ L+ + K D I+ +D G + K +
Sbjct: 11 ENIYTLINDDDYRPLKFKELCYLLQIGGRDKDDLLEILNELVDEGRIEKTSKGKYQ-KLG 69
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
G + G F + F FV E KE F+P++ A D VL+ + + + E
Sbjct: 70 KGVLVGTFISNQRGFGFVRVEGY--KEDFFVPQKYTMGAFHNDKVLIRVASGNRG-RSTE 126
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIP-TGSFGKDIYIPNSKIANADNKDLVAVEITF 184
V +I+E +VG +K++NF FVIP G DI+IP K A V VEIT
Sbjct: 127 AHVERILERGLKQLVGTYQKNRNFGFVIPDNGKLDSDIFIPEKKSMGAVTGHKVVVEITN 186
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYS 242
+G+ + EG++++ILG + + + +++ + F + M + K I E + +
Sbjct: 187 YGEKSKSAEGRVVEILGHINDPETDVLSVVRDLDIPVDFPDVVMAEVKNIPDEVTSKEMA 246
Query: 243 NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
R +L L +TIDG DAKDLDDA+ + + ENG YKL V IADV+HYV++ + LD EA
Sbjct: 247 GRTDLRQLQTVTIDGEDAKDLDDAITLYE-ENGLYKLGVHIADVTHYVRENSPLDKEALK 305
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RG S YL+D+V+PM P ++SNGICSLNE +++LT SC M+ID G ++N+++ +SVI
Sbjct: 306 RGTSCYLIDKVIPMLPHKLSNGICSLNEGKDRLTLSCLMDIDANGKIINHKICESVINVD 365
Query: 363 HRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RM+Y V+AI+ D D +Y ++ M + ML +S++LR + RGSIDF+ E K+
Sbjct: 366 RRMSYTSVSAIVEDHDPAETEKYKELVPMFELMLHVSELLRTIRHERGSIDFDFDESKIT 425
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
+DED +V + + +R +IIEDFM+AANET+AE +W ++ YR HE PD E++
Sbjct: 426 VDED-GQVSYIGVYERRRSNQIIEDFMLAANETIAEDYFWQQIPFEYRIHEAPDTERVKQ 484
Query: 482 LNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
L+ ++SKFGY + +N+HPK+FQ+++ + + + L+ + LR ++QARY+ E H
Sbjct: 485 LSILISKFGYYFKASKENIHPKEFQKLLSKIEGEPCENLISRMTLRTMRQARYSTECEGH 544
Query: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTI----DNSIKPFKEADLDEIAQHISKTERV 596
FGL+ +Y HFTSPIRRY DL +HR++ I D+ +A L +++ S+ ER
Sbjct: 545 FGLSCKYYCHFTSPIRRYPDLQIHRIIKDNIHGRLDDRRLSHYDAILPKVSDDNSRKERR 604
Query: 597 AMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI-NYYA 655
A +AE + R+K VEYM+ +GE +++G + IF E IE D++T ++Y
Sbjct: 605 AEEAERQVERLKKVEYMEHHIGEEFEGIISGVINRGIFVELPNTIEGFVDVSTLYDDFYV 664
Query: 656 FDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
+ ++ Y M + K + +GD V V +K AD + I V D
Sbjct: 665 YSQDEYAMIGESTGKKYSIGDTVKVKVKLADKQSRRIEFVIRSD 708
>gi|110601044|ref|ZP_01389247.1| VacB and RNase II family 3'-5' exoribonucleases:Ribonuclease R
[Geobacter sp. FRC-32]
gi|110548221|gb|EAT61444.1| VacB and RNase II family 3'-5' exoribonucleases:Ribonuclease R
[Geobacter sp. FRC-32]
Length = 758
Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats.
Identities = 251/675 (37%), Positives = 380/675 (56%), Gaps = 16/675 (2%)
Query: 32 SPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEK 91
S ++ K II ++D G L+ + LP + + G + ++ + FV E+ E+
Sbjct: 32 SKAERPKFKAIIDGFVDEGALLRLRGRLFILPASGTGLTGKLSVHRDGYGFVMPEEGED- 90
Query: 92 EGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAF 151
+FIP + GD V V+I KK+ K EGR+VK +E + +VG EK +
Sbjct: 91 --VFIPARYLRENMHGDRVEVQIVAKKRDGK-QEGRIVKTLERGFSKLVGRFEKGAKVSR 147
Query: 152 VIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMI 210
VIP GKDI IP A N +V EIT + R EG+II++LG + +
Sbjct: 148 VIPDEVRIGKDIIIPAKAAGKATNGQVVVAEITSYAGAGRSMEGRIIEVLGWPDEPEVEV 207
Query: 211 DALIYREGLSEKFSNEAMQQTKEIIK--EEIDYSNRKNLTNLSIITIDGADAKDLDDAVY 268
+I + L + F ++ + + + ++ + R +L +TIDG AKD DDAV
Sbjct: 208 QTIIRKHELPDVFPPSVLKAARAVPETIQDSELEGRTDLRGQLTVTIDGETAKDFDDAVS 267
Query: 269 VEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSL 328
V+K G +L V+IADVSHYVK + LD EA RG SVY DR +PM P+E+SNGICSL
Sbjct: 268 VKKEGKGAIRLWVSIADVSHYVKPGSPLDKEAYLRGTSVYFPDRCIPMLPEELSNGICSL 327
Query: 329 NEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAI-LDGDKDLINEYSDI 387
N + ++LT + EM D G ++ Y SVI+SV R+TY V I +D D +L+ EY+++
Sbjct: 328 NPQVDRLTMTAEMLFDGSGTILEAAFYPSVIRSVARLTYTKVKKIVVDNDPELVKEYAEL 387
Query: 388 YEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDF 447
LK M EL+ L K+ RGSIDF+LPE +++LD + ++ +R KIIE+F
Sbjct: 388 VPELKTMEELALRLMAKRRKRGSIDFDLPEPEILLDLTGG-ITAIVRAERNLAHKIIEEF 446
Query: 448 MIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQE 506
M+AANE VA I EL +YR HE P+ K+ E + FGY++ + + P +FQ
Sbjct: 447 MLAANEAVASHIEERELPFLYRIHETPEFAKLQDFKEFIFNFGYELRLQEEKVSPGEFQR 506
Query: 507 IIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRV 566
I+++++ K ++++ +LR +KQARY+ E++ HFGLA++ YTHFTSPIRRY DL+VHR+
Sbjct: 507 ILDQAQGKPEERMINEVLLRCMKQARYSAENVGHFGLAAASYTHFTSPIRRYPDLVVHRI 566
Query: 567 LFSTIDNSI----KPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
L + I + + L E H SK ERVAM+AE E V +K ++YMQ +VGE L+
Sbjct: 567 LKKQLAKKIGEKDRENLASTLPETGLHTSKRERVAMEAEREIVELKKMQYMQDKVGEELD 626
Query: 623 VMVTGFAQKKIFFETDE-HIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++TG A F E E +E I+T ++Y + E+ + + S ++ +GD V +
Sbjct: 627 GIITGVASFGFFVELVEIFVEGMVHISTLKQDFYEYVEKQHALIGERSRTIYRIGDPVRI 686
Query: 681 VLKKADLLTLEIAVV 695
+ L ++ V
Sbjct: 687 RVAAVSLEKKQVEFV 701
>gi|148264740|ref|YP_001231446.1| ribonuclease R [Geobacter uraniumreducens Rf4]
gi|146398240|gb|ABQ26873.1| ribonuclease R [Geobacter uraniumreducens Rf4]
Length = 763
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 252/670 (37%), Positives = 373/670 (55%), Gaps = 21/670 (3%)
Query: 40 KIIILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKE 99
K II +++ G L+ K LP + + G + ++ + FV E KE IFIP
Sbjct: 40 KEIIDGFVEDGVLVRLKGRLYVLPTETAGIVGKLTVHRDGYGFVIPEAG--KEDIFIPAR 97
Query: 100 EFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SF 158
+ GD V V I KK+ K EGR+VK +E +VG E ++ F VIP
Sbjct: 98 YLRENMHGDKVEVRIVAKKRDGK-QEGRIVKTVERGFTKIVGRFESAREFGRVIPDEVRI 156
Query: 159 GKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREG 218
+DI IP A N +V EIT + + EG+I+++LG + + +I +
Sbjct: 157 NRDILIPIKASGKAQNGQVVVAEITSYPVAGKGLEGRIVEVLGWPDEPEVEVQTIIRKYD 216
Query: 219 LSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGN 276
L F EA+ + + + D R +L +TIDG A+D DDAV V++ GN
Sbjct: 217 LPYIFPAEALSGARAVSQSVTAADLEGRTDLRGRPTVTIDGETARDFDDAVSVKREGKGN 276
Query: 277 YKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLT 336
+L V+IADVSHYVK + +D EA RG SVY DR +PM P+E+SNGICSLN ++LT
Sbjct: 277 IRLWVSIADVSHYVKPGSPIDREAYLRGTSVYFPDRCIPMLPEELSNGICSLNPTVDRLT 336
Query: 337 FSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDV-NAILDGDKDLINEYSDIYEMLKQML 395
+ EM G+++ Y SVIKS R+TY V N +++ D+ L EY D+ LK M
Sbjct: 337 VTAEMLFGPSGEMLQASFYPSVIKSAARLTYTIVKNILVEKDQKLCEEYEDLVADLKVME 396
Query: 396 ELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETV 455
EL+ L K+ RGSIDF+LPE +++LD + ++ +R KIIE+ M+AANE V
Sbjct: 397 ELALRLMTKRKKRGSIDFDLPEPEILLDMQGGTL-AIIRAERNLAHKIIEECMLAANEAV 455
Query: 456 AERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDK 514
A I + S+YR HE PD K+ E + FGY++ +++ P +FQ ++++++ K
Sbjct: 456 ASHIEERHIPSLYRVHETPDFAKLQDFREFVFNFGYELRLKEESVEPGEFQRLLDQAEGK 515
Query: 515 ETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS 574
++++ +LR +KQARY+ E++ HFGLA++ YTHFTSPIRRY DL+VHR+L + I
Sbjct: 516 PEERMINEVLLRCMKQARYSAENLGHFGLAAASYTHFTSPIRRYPDLVVHRILKTLIG-- 573
Query: 575 IKPFKEAD-------LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTG 627
K F E + L E A H SK ERVAM+AE E V +K ++YM+ ++GE + ++TG
Sbjct: 574 -KKFSEKEKEQLAETLPETAVHTSKRERVAMEAEREIVELKKMQYMRDKIGEEFDGIITG 632
Query: 628 FAQKKIFFETDE-HIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKA 685
A F E E IE I+T ++Y + E+ + + S VF +GD+V V +
Sbjct: 633 VAAFGFFVELVELFIEGMVHISTLKQDFYQYVEKQHSLIGEQSRTVFRIGDRVRVRVAAV 692
Query: 686 DLLTLEIAVV 695
L +I V
Sbjct: 693 SLEKKQIEFV 702
>gi|39996585|ref|NP_952536.1| ribonuclease R, putative [Geobacter sulfurreducens PCA]
gi|39983466|gb|AAR34859.1| ribonuclease R, putative [Geobacter sulfurreducens PCA]
Length = 763
Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats.
Identities = 229/647 (35%), Positives = 367/647 (56%), Gaps = 15/647 (2%)
Query: 47 IDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALD 106
+ +GDL+ + +R ++P V+G + + FV E + +++P L
Sbjct: 46 VSAGDLVKQRGNRYAVPSEETVVRGRLVTHREGYGFVVPEGGGDD--VYVPARYLGGNLH 103
Query: 107 GDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIP 165
GD V V + K+ K EGR+++ IE +VG + + FV P + +DI +P
Sbjct: 104 GDVVEVRVESFKRGGK-KEGRIIRTIERGLKRIVGRFDTAGGVGFVQPDDTRITRDIAVP 162
Query: 166 NSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
A + +V E+T W + +K EG+I+++LGS + + + +I + L +F
Sbjct: 163 QKAWGGARSGQVVVAELTAWPTERKKAEGRIVEVLGSPDDPEVEVLTIIRKHDLPYEFPV 222
Query: 226 EAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAI 283
+ + + + +E D + R +L +TIDG A+D DDAV V++ + G+ +L V+I
Sbjct: 223 DVLTEARSTPQEVRRGDVAKRVDLRERLTVTIDGETARDFDDAVSVQREKGGDIRLWVSI 282
Query: 284 ADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEI 343
ADVSHYVK + LD EA RG SVY DR +PM P+E+SNGICSLN + E+LT + EM
Sbjct: 283 ADVSHYVKPGSALDREAYLRGTSVYFPDRCIPMLPEELSNGICSLNPQVERLTLTAEMLF 342
Query: 344 DLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILR 402
G + + Y SVI+S R+TY V +L DGD + I + + L+ M EL+ L
Sbjct: 343 TRSGAIKSSSFYPSVIRSAARLTYTTVRKVLVDGDPEAIKANRHLVDDLEVMKELALRLM 402
Query: 403 IKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWL 462
K+ RGSIDF+LPE +++LD V+ ++ +R +IIE+FM+AANE VA I
Sbjct: 403 EKRKKRGSIDFDLPEPQIVLDLQGEMVD-IIRSERNLAHRIIEEFMLAANEAVASHIEER 461
Query: 463 ELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVH 521
+ S+YR HE PD K+ E + FGY + D + P + Q +I+ ++ K +++
Sbjct: 462 GIPSLYRVHEPPDPTKLTDFREFIFNFGYAFRMDGDRVDPHELQRLIDEAEGKPEERMIN 521
Query: 522 KTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKE- 580
+ +LR +KQARY+ E++ HFGLA+ YTHFTSPIRRY DL+VHR+L + ++ ++
Sbjct: 522 EVLLRCMKQARYSHENLGHFGLAARCYTHFTSPIRRYPDLVVHRILKDILAGAMTEKEQE 581
Query: 581 ---ADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE- 636
A L E A+ S+ ER+AM+AE E V +K ++M++RVGET +TG + F E
Sbjct: 582 RLAAALPETAEQTSRRERLAMEAEREIVALKKAQFMKERVGETFEGYITGVSSFGFFVEL 641
Query: 637 TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVL 682
D +E ++T N +Y ++E+ + + + + F +GD+V V++
Sbjct: 642 IDLFVEGMVHVSTLANDFYRYEEKRHSLVGERTKETFRIGDRVSVLV 688
>gi|78222598|ref|YP_384345.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R [Geobacter
metallireducens GS-15]
gi|78193853|gb|ABB31620.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R [Geobacter
metallireducens GS-15]
Length = 759
Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats.
Identities = 235/660 (35%), Positives = 365/660 (55%), Gaps = 15/660 (2%)
Query: 47 IDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALD 106
+ G L+ + +R +L + V G + + FV E + ++IP ++
Sbjct: 46 VTDGHLVRLRGNRYALADGENLVTGRLTCHPDGYGFVIPEGGGDD--VYIPARALAGSMH 103
Query: 107 GDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIP 165
GDTV V + E K+ EGR+V+ + + VVG E+ K F V+P + + I I
Sbjct: 104 GDTVEVRV-ETFKAGGKKEGRIVRTVTRGQTRVVGRFEQLKGFGVVVPDETRISQQIVIS 162
Query: 166 NSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
I A V EIT + + R+PEG+I+++LG + + + +I + GL +F
Sbjct: 163 QQGIGRAKGGQTVVAEITAYPTEKRRPEGRIVEVLGWPDDPEVEVRTIIAKHGLPFEFPA 222
Query: 226 EAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAI 283
E + + + + + E D R +L + +TIDG A+D DDAV V K GN +L V+I
Sbjct: 223 EVLDEARAVPQAIGEKDLQGRTDLREIVTVTIDGETARDFDDAVAVRKERGGNIRLWVSI 282
Query: 284 ADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEI 343
ADVSHYVK + LD EA RG SVY DR +PM P+E+SNGICSLN + E+LT + EM
Sbjct: 283 ADVSHYVKPDAPLDREAYLRGTSVYFPDRCIPMLPEELSNGICSLNPRVERLTMTAEMLF 342
Query: 344 DLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILR 402
G + Y SVIKS R+TY V IL DGD + + + ++ L+ M EL++ L
Sbjct: 343 TRSGTMKEATFYPSVIKSDARLTYTIVKKILVDGDAEAMAAHQELVPHLEVMRELAQSLT 402
Query: 403 IKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWL 462
K+ RGSIDF+LPE ++ILD V+ ++ +R +IIE+FM+AANE VA I
Sbjct: 403 EKRRKRGSIDFDLPEPQIILDLQGETVD-IIQAERNLAHRIIEEFMLAANEAVASHIEAK 461
Query: 463 ELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVH 521
+ S+YR HE PD K++ E + FG+ D + P + Q ++ ++ +++
Sbjct: 462 GIPSLYRVHEPPDPAKLIDFQEFIFNFGFHFRMEGDRVEPAEIQRLLVETEGTPEERMIN 521
Query: 522 KTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK-- 579
+ +LR +KQARY+ E++ HFGLA+ YTHFTSPIRRY DL+VHR+L + + I +
Sbjct: 522 QVLLRCMKQARYSHENLGHFGLAARCYTHFTSPIRRYPDLVVHRILKALLAGKITDKEIA 581
Query: 580 --EADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE- 636
E L E A+ S+ ERVAM+AE E V +K ++M +++GE + +TG +F E
Sbjct: 582 RLETTLPETAEQTSRRERVAMEAEREIVALKKAQFMLQKIGEDFDGYITGVTSFGLFVEL 641
Query: 637 TDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVV 695
T+ +E I+T +YY + E+ + + + + + +GDKV V + + ++ V
Sbjct: 642 TEIFVEGMVHISTMGDDYYRYVEKQHSLVGERTKETYRIGDKVRVTVAAVSIEKKQVEFV 701
>gi|69247783|ref|ZP_00604488.1| 3'-5' exoribonuclease, VacB and RNase II [Enterococcus faecium DO]
gi|68194712|gb|EAN09194.1| 3'-5' exoribonuclease, VacB and RNase II [Enterococcus faecium DO]
Length = 785
Score = 386 bits (991), Expect = e-105, Method: Composition-based stats.
Identities = 247/661 (37%), Positives = 385/661 (58%), Gaps = 34/661 (5%)
Query: 52 LIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVL 111
++ +KK ++ LP ++G FR + F FV + E++ I+IPKE A+DGDTV
Sbjct: 55 IVFNKKGKVKLPLKPILIEGTFRANERGFGFVTID--PEEDDIYIPKEATGFAMDGDTVA 112
Query: 112 VEITEKKKSD--KGAEGRVVKIIEHRKNTVVGI--------LEKSKNFAFVIPTGSFGKD 161
++I ++ +D +GAEG+VV+I + + G ++++ + VIP KD
Sbjct: 113 IDIMKRANTDMDRGAEGKVVEIRDRATTQLAGEFVAYSEEEIQETDLYGVVIP-----KD 167
Query: 162 IYIPNSKIANAD------NKDLVAVEITFWGDDDRKP--EGKIIKILGSSTNSKNMIDAL 213
+ K+ A + +V +E+T + + EG I +++G + I ++
Sbjct: 168 RKLNQFKVYAAAEGVRPVDGSIVLIELTHYPEKGYATSLEGIIKQVIGHKNDPGMDILSI 227
Query: 214 IYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEK 271
+ G+ KF ++ + + E+ + E D + R++L N I+TIDG DAKDLDDAV V+K
Sbjct: 228 VVANGIPTKFPDDVLSEADEVPDQISEKDITGRRDLRNQLIVTIDGEDAKDLDDAVTVKK 287
Query: 272 LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEK 331
L+NGNY L V IADVS+YV + + LD EA RG SVYL DRV+PM P+ +SNGICSLN
Sbjct: 288 LDNGNYFLGVHIADVSYYVTQGSQLDREAYERGTSVYLTDRVIPMIPQRLSNGICSLNPH 347
Query: 332 EEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEM 390
+LT SCEMEID G VV+++++ SVI++ RMTY VN IL D D++ + Y+ + M
Sbjct: 348 VPRLTMSCEMEIDPNGQVVSHDIFPSVIQTTERMTYTAVNQILEDQDEETMQRYAQLVPM 407
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
++M EL +IL + RG+I FE E K+++D + + + L+ RG GE++IE FM+A
Sbjct: 408 FQEMGELHRILETMRIKRGAISFEDREAKILVDAEGHP-NDIQLRSRGIGERLIESFMLA 466
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFD-NLHPKQFQEIIE 509
ANETVAE L L IYR HE+P EK+ + S G + + PK Q +IE
Sbjct: 467 ANETVAEHYNKLNLPFIYRIHEQPKEEKMQRFFDFASALGILVRGTKGTITPKDLQHVIE 526
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS 569
+DK + +++ +LR+++QARY+ ++ H+GLA+ +YTHFTSPIRRY DL+VHR++ S
Sbjct: 527 GVEDKPEAAVINTMLLRSMQQARYSEDNFGHYGLAADYYTHFTSPIRRYPDLIVHRLIRS 586
Query: 570 TIDNSIKPFKE---ADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVT 626
++ + + A+L EIA H SK ER A++ E E +K E+M +VGE + +++
Sbjct: 587 YSEDKSESNQSSWAAELPEIADHSSKMERRAVETEREVDSMKKAEFMMDKVGEEFDGIIS 646
Query: 627 GFAQKKIFFETDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKA 685
+ +F E +E I +Y+ F E + + + F +G KV V + KA
Sbjct: 647 SVVKFGLFIELPNTVEGLIHINELKQDYFHFVENHLALVGERTGLTFKIGQKVRVKVVKA 706
Query: 686 D 686
D
Sbjct: 707 D 707
>gi|154248880|ref|YP_001409705.1| ribonuclease R [Fervidobacterium nodosum Rt17-B1]
gi|154152816|gb|ABS60048.1| ribonuclease R [Fervidobacterium nodosum Rt17-B1]
Length = 766
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 258/660 (39%), Positives = 380/660 (57%), Gaps = 18/660 (2%)
Query: 47 IDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALD 106
I+ G + D R L + + +V + FV ED +E I +P E+ N A+
Sbjct: 47 INIGYIFKDDNGRYQLSKGNLFVGTIEFTRSGNLTFVTTEDGQE---IAVPIEKTNLAMH 103
Query: 107 GDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIP 165
D V V+I K + EGRVVKI+E VG+ E FA++IP + +P
Sbjct: 104 KDKVQVQIIGKWY--ELPEGRVVKILERGIKKFVGVFETRGQFAYIIPDDPKLPFEFKVP 161
Query: 166 NSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
I A V EIT + R PE K++++LG + ++ + L +F +
Sbjct: 162 IEDINGAKPGMKVVAEITKYPSIKRGPEAKVVEVLGKVEDPATDFPTVVVKHDLPVQFPD 221
Query: 226 EAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAI 283
+ M++ ++ + E D R + N I+TIDG DAKD DDAV+V+KL NGNY L V I
Sbjct: 222 DVMEEVSKLPDKVSEKDLEGRWDFRNEVIVTIDGLDAKDFDDAVHVKKLPNGNYLLGVHI 281
Query: 284 ADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEI 343
ADVSHYVK T LD EA +R S+YL DRV+PM P ++SNG+CSL + E++L S MEI
Sbjct: 282 ADVSHYVKPNTALDREAFNRATSIYLADRVIPMLPFKLSNGLCSLVQGEDRLVMSLLMEI 341
Query: 344 DLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRI 403
D KG+VV+Y+V VI+S R+ Y DVNA L+G + ++ D+ E + M EL ILR
Sbjct: 342 DKKGEVVDYKVGNGVIRSYRRLVYDDVNAFLEGRPEG-DKLKDLAEHIYLMKELKDILRE 400
Query: 404 KKFTRGSI-DFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWL 462
+ RG+I D E E+K+ILDE + ++ ++ + RGE E IIE+FMI ANETVAE +
Sbjct: 401 NRRRRGAILDIEGDEVKIILDEKGHAID-IVPRKRGESEVIIEEFMIKANETVAEIFHNA 459
Query: 463 ELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHK 522
++ IYR HE+PD + + L LS G + +HPK QE++E++KD + +
Sbjct: 460 DIPFIYRIHEQPDFDTLFQLKNYLSAIGINMKLPQQIHPKILQELLEKTKDHPLRSSIQR 519
Query: 523 TILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDN----SIKPF 578
++R++K+A Y+ +I HFGLAS YTHFTSPIRRY DL+VHR+L ++ S K
Sbjct: 520 LLVRSMKRAIYSPSNIGHFGLASEAYTHFTSPIRRYPDLIVHRLLKKYLETGGSISKKEM 579
Query: 579 K--EADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE 636
K E L++ + H SK ERVA +AE + +K ++Y+ K +GE V+VT A+ +F E
Sbjct: 580 KNIEKYLEKASIHCSKRERVADEAEWDYEALKKIDYISKHIGEVYKVVVTSVAKFGLFVE 639
Query: 637 T-DEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVV 695
D++I I+T +YY +DE+ + S K++ +GD + + KAD + +EI V
Sbjct: 640 IPDKYISGLIHISTLDDYYFYDEQKSILTGKHSGKIYRIGDVLYAKVVKADKVRMEIDFV 699
>gi|83589142|ref|YP_429151.1| Ribonuclease R [Moorella thermoacetica ATCC 39073]
gi|83572056|gb|ABC18608.1| Ribonuclease R [Moorella thermoacetica ATCC 39073]
Length = 770
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 238/652 (36%), Positives = 376/652 (57%), Gaps = 19/652 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G ++ +K + LPE G V G + +AFV D +++E ++I N A+ GD
Sbjct: 46 GYIVRTRKDKYGLPEKMGLVSGRLQASPRGYAFVVPLD-KDREDLYIGALNINGAMHGDL 104
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + EG ++++++ VVG + ++N FVIP + +DI IP
Sbjct: 105 VLARVL-PGTTGRRQEGEIIRVLQRVNKRVVGTFDATRNLDFVIPDDARLHQDIIIPAGA 163
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A ++D V VEIT W + R PEG++I++LG + + ++I + GL +F E +
Sbjct: 164 SLEARDRDKVVVEITRWPEARRSPEGRVIQVLGQTGAPGVDVLSIIKKYGLETEFPPEVI 223
Query: 229 QQTKEIIK--EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ +EI + E + + R++L + ++TIDGADA+DLDDAV +E+ +G+Y L V IADV
Sbjct: 224 REAEEIPRDLEPGELAKRRDLRDWRLVTIDGADARDLDDAVSLERRPDGSYLLGVHIADV 283
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
S YV++ LD EA +RG SVY VDRV+PM P +SN ICSLN E++L + M I
Sbjct: 284 SFYVREGRPLDREAFNRGTSVYFVDRVIPMLPARLSNDICSLNAGEDRLAITALMTISPA 343
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G V +YE++ SVI+ RMTY DV IL D D +L+ Y ++ + M L+ ILR ++
Sbjct: 344 GTVKDYELFPSVIRVRERMTYDDVRRILEDKDPELMERYRELVPDFQLMARLAAILRRRR 403
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+IDF+ PE KV LD+ V ++ + R E IIE+FMI ANE VA +Y L +
Sbjct: 404 RRRGAIDFDFPEAKVKLDDQGLPV-AIIPRHRTVAEGIIEEFMIVANEVVARHLYELAVP 462
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDN-LHPKQFQEIIERSKDKETSMLVHKT 523
++YR HE+P +K+ LN L+ FG I PN + + P+ FQEI+ K + ++
Sbjct: 463 AVYRVHEEPAPDKLEALNTFLAYFGLHIKPNREGRVRPRAFQEILAAVKGRPEERVISTV 522
Query: 524 ILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADL 583
+LR++ ARY + + HFGLAS +Y HFTSPIRRY DL+VHR+L T S F +
Sbjct: 523 MLRSMMHARYAGDCLGHFGLASPYYCHFTSPIRRYPDLVVHRILRETW--SPAGFSAERM 580
Query: 584 DEIAQHI-------SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE 636
+++ + S+ E++A +AE ES+ +K V+YM++ VG T +++G F E
Sbjct: 581 AQLSAFVALAAVQASEREKLAEEAERESLDMKKVQYMERHVGATFAGVISGVVPYGFFVE 640
Query: 637 TDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+ +E ++T +YY + E+ + + K + +G V V++ + +
Sbjct: 641 LENTVEGLVHVSTLTDDYYHYQEDQLALVGEHTGKSYRIGQPVTVLVTRVSV 692
>gi|15643485|ref|NP_228531.1| vacB protein [Thermotoga maritima MSB8]
gi|7674335|sp|Q9WZI1|RNR_THEMA Ribonuclease R (RNase R) (VacB protein homolog)
gi|4981247|gb|AAD35804.1|AE001743_6 vacB protein [Thermotoga maritima MSB8]
Length = 710
Score = 385 bits (988), Expect = e-105, Method: Composition-based stats.
Identities = 278/704 (39%), Positives = 389/704 (55%), Gaps = 33/704 (4%)
Query: 10 IKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSGYV 69
+KEL K + T +Q E K +K+ +I S L D K SGYV
Sbjct: 23 LKELYKKFRAKTREQRKKVREVVKKLEKEGRIFRDSRGRYRKLGEDLKVGTIEFTRSGYV 82
Query: 70 KGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVV 129
AFV +D EE I +P E+ A+ D V+VEIT + GRVV
Sbjct: 83 -----------AFVITDDFEE---IAVPVEDTKYAMHKDRVVVEITGTWRGL--PRGRVV 126
Query: 130 KIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDD 188
+++E VVG+ + F FV+P D Y+ I A V EI +
Sbjct: 127 RVLERGLKRVVGVFDHKGTFGFVVPDDPKIAYDFYVAPENIDGAKPNQKVIAEILKYPSP 186
Query: 189 DRKPEGKIIKILGSSTNSKNMIDALIYREGLSE--KFSNEAMQQTKEIIKE--EIDYSNR 244
+ PE K++K+LG + + ++I + L E +F E +++ I + D R
Sbjct: 187 GKNPEAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREANAIPARVRKKDLVGR 246
Query: 245 KNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRG 304
K+L + I+TIDG DAKD DDA+ VEKL NGNY L V IADVSHYVK+ + LD EA RG
Sbjct: 247 KDLRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRG 306
Query: 305 NSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHR 364
SVYL+D V+PM P +SNGICSL E +++LT S EMEID G VV Y+VY SVIKS R
Sbjct: 307 TSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVIKSKKR 366
Query: 365 MTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSI-DFELPELKVILD 423
M Y+ VN L+ D + EY +++ +EL++ILR + RG+I D E E+KVILD
Sbjct: 367 MIYERVNEFLE-DPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDEVKVILD 425
Query: 424 EDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLN 483
E N +V ++ + RG EK+IE+FMI ANETVAE L +YR HE+PD E I L
Sbjct: 426 E-NGQVVDIVPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDPETIFQLK 484
Query: 484 EILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGL 543
L G + +HP Q+++E+ KD V + ++R++K+A Y+ +I HFGL
Sbjct: 485 NYLEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAVNIGHFGL 544
Query: 544 ASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS-------IKPFKEADLDEIAQHISKTERV 596
AS YTHFTSPIRRY DL+VHR+L ++ + I+ F + L +IA+H S+ ERV
Sbjct: 545 ASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEKFSKV-LPKIAKHCSRRERV 603
Query: 597 AMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEH-IECSWDITTAINYYA 655
A +AE + V +K VEY+ + +GE NV+VT + +F E E I I+T +YY
Sbjct: 604 ADEAEWDLVAMKKVEYIARHIGEVFNVVVTNITKFGLFVEIPEKSISGLVHISTLDDYYY 663
Query: 656 FDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
+DE + KVF LGD + + +AD + EI V +++
Sbjct: 664 YDETRNMLIGKRKGKVFRLGDVLKAKVVRADKIRGEIDFVLVEE 707
>gi|148269352|ref|YP_001243812.1| ribonuclease R [Thermotoga petrophila RKU-1]
gi|147734896|gb|ABQ46236.1| ribonuclease R [Thermotoga petrophila RKU-1]
Length = 710
Score = 384 bits (987), Expect = e-105, Method: Composition-based stats.
Identities = 256/626 (40%), Positives = 364/626 (58%), Gaps = 19/626 (3%)
Query: 88 SEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSK 147
++E E I +P E+ A+ D V+VEI + GRVVK++E VVG+ +
Sbjct: 87 TDEFEEIAVPVEDTKYAMHKDRVVVEIAGTWRGL--PRGRVVKVLERGLTRVVGVFDHKG 144
Query: 148 NFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNS 206
F FV+P D Y+ I A V EI + + PE K++K+LG +
Sbjct: 145 TFGFVVPDDPKIAYDFYVAPENIDGAKPNQKVIAEILKYPSPGKNPEAKVVKVLGDLDDP 204
Query: 207 KNMIDALIYREGLSE--KFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKD 262
+ ++I + L E +F E +++ I + + D RK+L + I+TIDG DAKD
Sbjct: 205 SIDLPSVIVKHDLPEPGEFPEEVIREANSIPAKVRKKDLVGRKDLRDKVIVTIDGEDAKD 264
Query: 263 LDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEIS 322
DDA+ VEKL NGNY L V IADVSHYVK+ + LD EA RG SVYL+D V+PM P +S
Sbjct: 265 FDDAISVEKLSNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTSVYLIDTVIPMLPFRLS 324
Query: 323 NGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLIN 382
NGICSL E +++LT S EMEID G VV Y+VY SVIKS RM Y+ VN L+ D +
Sbjct: 325 NGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVIKSKKRMIYERVNEFLE-DPSSMK 383
Query: 383 EYSDIYEMLKQMLELSKILRIKKFTRGSI-DFELPELKVILDEDNNKVEKVLLKDRGEGE 441
EY +++ +EL++ILR + RG+I D E E+KVILDE N +V ++ + RG E
Sbjct: 384 EYEPFKDLIYNAVELAEILREARRKRGAILDIESDEVKVILDE-NGQVVDIVPRKRGIAE 442
Query: 442 KIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHP 501
K+IE+FMI ANETVAE L +YR HE+PD E I L L G + N+HP
Sbjct: 443 KLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDPETIFQLRNYLEAMGIRANFPQNIHP 502
Query: 502 KQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDL 561
Q+++E+ KD V + ++R++K+A Y+ +I HFGLAS YTHFTSPIRRY DL
Sbjct: 503 GMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAVNIGHFGLASYAYTHFTSPIRRYPDL 562
Query: 562 MVHRVLFSTIDNS-------IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQ 614
+VHR+L ++ + I+ F + L +IA+H S+ ERVA +AE + V +K VEY+
Sbjct: 563 VVHRLLKLYLEQNGYFTPEQIEKFSKV-LPKIAKHCSRRERVADEAEWDLVAMKKVEYIA 621
Query: 615 KRVGETLNVMVTGFAQKKIFFETDEH-IECSWDITTAINYYAFDEENYCMRDTDSDKVFY 673
+ +GE +V+VT + +F E E I I+T +YY +DE + +VF
Sbjct: 622 RHIGEVFDVVVTNITKFGLFVEIPEKSISGLVHISTLDDYYYYDETRNMLIGKRKGRVFR 681
Query: 674 LGDKVDVVLKKADLLTLEIAVVPLDD 699
LGD + V + +AD + EI V +++
Sbjct: 682 LGDVLKVKVMRADKIRGEIDFVLVEE 707
>gi|29377102|ref|NP_816256.1| ribonuclease R [Enterococcus faecalis V583]
gi|29344568|gb|AAO82326.1| ribonuclease R [Enterococcus faecalis V583]
Length = 789
Score = 382 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 249/660 (37%), Positives = 389/660 (58%), Gaps = 26/660 (3%)
Query: 55 DKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEI 114
+KK ++ LP ++G FR + F FV D EE + ++IPKE N A+DGDTVL+++
Sbjct: 58 NKKGKVLLPMKDLLIEGTFRANERGFGFVTI-DPEEPD-VYIPKEATNFAMDGDTVLIDV 115
Query: 115 TEKKK--SDKGAEGRVVKIIEHRKNTVVGI--------LEKSKNFAFVIPTGSFGKD--I 162
+ SD+GAEG+V +I E + VVG + + + ++IP +
Sbjct: 116 IQHADPFSDRGAEGKVKEIKERAVSQVVGEFVAYSEEEMAEMGLYGYMIPKDKKLNQYTV 175
Query: 163 YIPNSKIANADNKDLVAVEITFWGDDDRKP--EGKIIKILGSSTNSKNMIDALIYREGLS 220
I I D ++A EIT++ D + EG + +++G + I +++ G+
Sbjct: 176 SIAPEGIKPVDGSIVIA-EITYYPDQEYPTSMEGLVKQVIGHKNDPGMDILSIVVAHGIP 234
Query: 221 EKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYK 278
F +E + + ++ + E D R++L + I+TIDG DAKDLDDAV V+KL NGN+
Sbjct: 235 TAFPDEVLAEADQVPETIAESDLVGRRDLRDQLIVTIDGEDAKDLDDAVTVQKLANGNFF 294
Query: 279 LIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFS 338
L V IADVS+YV + + LD+EA RG SVYL DRV+PM P+ +SNGICSLN +LT S
Sbjct: 295 LGVHIADVSYYVTEGSQLDMEAYERGTSVYLTDRVVPMIPQRLSNGICSLNPHVPRLTMS 354
Query: 339 CEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDK-DLINEYSDIYEMLKQMLEL 397
CEMEI +G+V+++E+++SVI++ RMTY VN IL+ K + + Y ++ M K+M EL
Sbjct: 355 CEMEITPEGEVISHEIFQSVIQTTERMTYTAVNEILEEQKPETLERYKELVPMFKEMGEL 414
Query: 398 SKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAE 457
IL + RG+I FE E KV++DE N + +LL+ RG GE++IE FM+AANETVA
Sbjct: 415 HHILEEMRMRRGAISFEDREAKVLVDE-NGHPKDILLRTRGVGERLIESFMLAANETVAR 473
Query: 458 RIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKET 516
+ L+L IYR HE+P EK+ + + G + +N+ PK Q+++E+ ++K
Sbjct: 474 HYHDLKLPFIYRIHEQPKEEKMQRFFDFAAVLGILVKGTKENISPKDLQKVLEQVENKPE 533
Query: 517 SMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIK 576
++++ +LR+++QA+Y+ ++ H+GLA+ +YTHFTSPIRRY DL+VHR++ S + +
Sbjct: 534 EVVINTMLLRSMQQAKYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRSYSQDQSE 593
Query: 577 PFKEA---DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+E L EIA H S ER A+ AE E +K E+M +VGET + +++ + I
Sbjct: 594 KNQEKWNEALPEIANHSSSMERRAVDAEREVDAMKKAEFMVDKVGETYDGIISSVTKFGI 653
Query: 634 FFETDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
F E IE + +Y+ F E + + + +G KV + ++KAD T E+
Sbjct: 654 FVELPNTIEGLIHVNNLKQDYFHFIENHMALVGERTGMTLKIGQKVQIRVEKADPETREV 713
>gi|90962131|ref|YP_536047.1| Ribonuclease R 1 [Lactobacillus salivarius subsp. salivarius
UCC118]
gi|90821325|gb|ABD99964.1| Ribonuclease R 1 [Lactobacillus salivarius subsp. salivarius
UCC118]
Length = 799
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 247/663 (37%), Positives = 376/663 (56%), Gaps = 31/663 (4%)
Query: 55 DKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEI 114
D L + E+ +GVF F FV +D EE + FI + AL+GD V+VE+
Sbjct: 60 DDTFSLIVKESPKTFEGVFHANDRGFGFVSVDD-EELDDFFISPTQTLAALNGDRVVVEM 118
Query: 115 TEKKKSD--KGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANA 172
+ + K EG+V++II+H VVG + ++P G G +++ + K++N
Sbjct: 119 ISEGDPEISKRPEGKVIEIIDHALTQVVGEFRVDPDE--IMPDGYIGT-VHLKDKKLSNI 175
Query: 173 D-----------NKDLVAVEITFWGDDDRKP--EGKIIKILGSSTNSKNMIDALIYREGL 219
+++ +IT + + +K++G+ + I ++Y+ +
Sbjct: 176 KCFIEEKGLHPVPGEVILADITSYPTQTLPNIIKAVAVKVIGNVNDPGMDILEIVYQHNI 235
Query: 220 SEKFSNEAMQQTKEI---IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGN 276
+F E ++Q +I + EE + R +LT+ ++TID ++KDLDDAV V KL NGN
Sbjct: 236 PTEFPEEVLEQISKIPDYVTEE-EKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGN 294
Query: 277 YKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLT 336
Y L V IADVSHYVK +T LD EA RG SVYL DRV+PM P ++SNGICSLN E+L
Sbjct: 295 YHLGVHIADVSHYVKPKTPLDKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLA 354
Query: 337 FSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINE-YSDIYEMLKQML 395
+CEMEI+ G+VVN++++ SVIKS RMTYK +N IL+ D + E Y+D+ M K M
Sbjct: 355 MTCEMEINADGEVVNHKIFPSVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMA 414
Query: 396 ELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETV 455
EL KIL + RG+IDF+ PE K+I+DE + ++ + L++RG E+++E FM+AANETV
Sbjct: 415 ELHKILVKMRKRRGAIDFDAPEAKIIVDELGHPID-IELRERGTSERMVESFMLAANETV 473
Query: 456 AERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDK 514
A L + +YR HE P EKI T E L+ G ++ N + PK Q I+++ K
Sbjct: 474 AAHYNKLHVPFVYRIHETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGK 533
Query: 515 ETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDN- 573
+V +LR+++QA+Y+ + + HFGLA+ YTHFTSPIRRY DLMVHR++ +N
Sbjct: 534 PEEAMVSTMLLRSMQQAKYSPDPLGHFGLAAKDYTHFTSPIRRYPDLMVHRLIRYYKENG 593
Query: 574 ---SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQ 630
++ LDEI H S+ ER A+ AE ++ +K E+M RVGET +V+ +
Sbjct: 594 TSEQVQEKYRDKLDEITLHSSQMERQAIDAERDTDAMKKAEFMADRVGETFPAVVSSVTK 653
Query: 631 KKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLT 689
+F + +E I+ +YY F E+ + S + F +G ++V L ++
Sbjct: 654 FGMFIALENTVEGLIHISEMKDDYYVFLEKQMALVGRHSKRTFKIGQPIEVKLINVNVEQ 713
Query: 690 LEI 692
EI
Sbjct: 714 KEI 716
>gi|116333316|ref|YP_794843.1| Exoribonuclease R [Lactobacillus brevis ATCC 367]
gi|116098663|gb|ABJ63812.1| Exoribonuclease R [Lactobacillus brevis ATCC 367]
Length = 797
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 234/648 (36%), Positives = 364/648 (56%), Gaps = 31/648 (4%)
Query: 69 VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE--KKKSDKGAEG 126
+ G+F F FV ++++ + +I + AL+GDTV +EI +S KG EG
Sbjct: 72 LTGIFHGNDKGFGFVAYDENKIEPDAYIAPDNTLRALNGDTVKIEIIRPGDPRSGKGPEG 131
Query: 127 RVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGK-----------DIYIPNSKIANADNK 175
+V +I+EH VVG ++ + A G G+ Y+ N + N
Sbjct: 132 KVTEIVEHHYEQVVGEFMQTDDDA-----GYLGQVRLTDKKVMKYKFYVTNVGL-NPTPG 185
Query: 176 DLVAVEITFWGDDDRKPE--GKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKE 233
++V EIT + + G +++GS + I ++Y+ + +F E MQ E
Sbjct: 186 EVVTAEITEYPSAEHPDAMVGIAKQVIGSVDDPGIDILQVVYQHNIPSEFPEEVMQAADE 245
Query: 234 IIKEEI--DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVK 291
I + + R+++T+ ++TIDG +KDLDDAV V KL NGNY L V IADVSHYVK
Sbjct: 246 IPDHVLPEETKGREDITDQDLVTIDGESSKDLDDAVTVWKLPNGNYHLGVHIADVSHYVK 305
Query: 292 KETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVN 351
++++LD EA RG SVYL DRV+PM P+ +SNGICSLNE E +L SC+MEID G+VV
Sbjct: 306 EDSILDKEAYKRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCDMEIDQSGNVVK 365
Query: 352 YEVYKSVIKSVHRMTYKDVNAILDG-DKDLINEYSDIYEMLKQMLELSKILRIKKFTRGS 410
+ ++ SV++S RMTY VN +L+ D+ ++ Y ++ M + M +L +IL + RG+
Sbjct: 366 HRIHPSVMRSKARMTYTAVNQVLEAHDQLTMDRYKELVPMFEDMGDLHRILVKHRKQRGA 425
Query: 411 IDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRT 470
IDF+ E ++I+D + ++ V L+ RG E++IE FM+AANETVAE + ++ +YR
Sbjct: 426 IDFDDREAEIIVDAQGHAID-VQLRTRGIAERMIESFMLAANETVAEHYFRAKVPFLYRV 484
Query: 471 HEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALK 529
HE PD +++ + E L+ FG + N L PK Q ++++ K +V +LR+LK
Sbjct: 485 HETPDGDRVKSFFEFLTAFGINVKGDPNHLRPKMLQGVLKQVAGKPEETMVSVMMLRSLK 544
Query: 530 QARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEAD----LDE 585
QARY + + HFGL + YTHFTSPIRRY D MVHR++ D+ I + L+E
Sbjct: 545 QARYADQSLGHFGLGAEFYTHFTSPIRRYPDTMVHRMIHYYEDHGINDASKQKFAPILEE 604
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSW 645
I H S+ ER A+ AE ++ +K+ EYM VGE + +V+ + +F E IE
Sbjct: 605 IGVHTSEAERRAIDAERDTNDMKMAEYMADHVGEEFDAVVSSVMKFGMFVELPNTIEGLI 664
Query: 646 DIT-TAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
I+ +YY + E+ + ++ + + +G ++ V + D EI
Sbjct: 665 HISRMQDDYYEYVEKYMALVGRNTRRTYRIGQEIRVKVIHVDKEQSEI 712
>gi|42518802|ref|NP_964732.1| ribonuclease R [Lactobacillus johnsonii NCC 533]
gi|41583088|gb|AAS08698.1| ribonuclease R [Lactobacillus johnsonii NCC 533]
Length = 780
Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats.
Identities = 258/696 (37%), Positives = 395/696 (56%), Gaps = 38/696 (5%)
Query: 22 LDQITSFLEWSPKKKKDNKIIILSWID-SGDLIMDKKHRLSLPENSGYVKGVFRIIKNKF 80
+DQ+ + L S + + + L++++ S ++ D + + L + + +G F+ F
Sbjct: 25 VDQLENDLSRSQRLNFPDLVKALTFLEHSKKIVTDGQGKYQLNQLNTVAEGTFKANDKGF 84
Query: 81 AFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKK--SDKGAEGRVVKIIEHRKNT 138
FV + D E E FI K A+DGD V V+I + KG EG++ +I E T
Sbjct: 85 GFV-RFDDESMEDAFIDKHNTKFAIDGDRVKVKIIAGANPWNGKGPEGKIEEITERGVET 143
Query: 139 VVG--------ILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNK------DLVAVEITF 184
+VG +++ S + +V+ ++ + KI DN D+V + IT
Sbjct: 144 LVGEFHPYSDEVVKSSGFYGYVV-----SENRKLKKYKINITDNGVKPQMGDMVKISITK 198
Query: 185 WGDDDRKPEGKIIKIL--GSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI---IKEEI 239
+ D+D+ E + + +L G+ + I +++ + + EAM Q I + EE
Sbjct: 199 YPDEDQPDEMQGVALLTIGNKNDPGVDIMSIVVDNDIRTDWPEEAMDQANNIPDHVTEE- 257
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
+ S R ++T+ +TIDG D+KD DDAV V KL NGNY L V IADVSHYVK+ T LD E
Sbjct: 258 EKSKRVDITDQPAVTIDGDDSKDFDDAVVVWKLPNGNYHLGVHIADVSHYVKEGTPLDKE 317
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A RGNS YLVDRV+PM P +SNGICSLNE E+L SC+MEI +G V Y +Y SV+
Sbjct: 318 AFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVERLVLSCDMEITPEGKRVGYRIYPSVM 377
Query: 360 KSVHRMTYKDVNAILDGD--KDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPE 417
KS R+TY +VN +LD + + L +Y+D ML +M +L IL K+ RG+IDFE PE
Sbjct: 378 KSHGRLTYNNVNKVLDPNNHEKLEQKYADAASMLHEMADLHNILYKKRHQRGAIDFEEPE 437
Query: 418 LKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDRE 477
K+++D D K ++L +RG EK+IE FM+ ANETVAE Y +YR HE PD+E
Sbjct: 438 AKIVVD-DKGKPTDIVLHERGTAEKMIESFMLMANETVAEDYYKKHTPFLYRVHETPDQE 496
Query: 478 KIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVE 536
K+ + E +S FG + + +++ PK Q+I+ +++ +V +LR+LKQA Y+ E
Sbjct: 497 KMQSFFEFVSAFGLNVKADPNDVKPKDLQKIVAKTEGTPEEAVVQMMMLRSLKQAHYSPE 556
Query: 537 DISHFGLASSHYTHFTSPIRRYSDLMVHRVLF----STIDNSIKPFKEADLDEIAQHISK 592
+ HFGLA+ +YTHFTSPIRRYSDLMVHR++ +D I+ +A L ++A+ S
Sbjct: 557 PLGHFGLAAKYYTHFTSPIRRYSDLMVHRMIHEYANENMDQDIQKHFKAQLPDVAEQTST 616
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTA-I 651
ER ++ E +K+ E+M +VG+T + +V+ +F + +E I+
Sbjct: 617 QERKSIDTERSVNDLKMTEFMADKVGQTFDAIVSSVTSFGMFIQLPNTVEGLIHISNLND 676
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+YY FDE++ + +S K F +G + V L +AD+
Sbjct: 677 DYYNFDEKSLTLTGRNSHKQFKIGMPIKVKLIRADV 712
>gi|118587033|ref|ZP_01544464.1| ribonuclease R [Oenococcus oeni ATCC BAA-1163]
gi|118432554|gb|EAV39289.1| ribonuclease R [Oenococcus oeni ATCC BAA-1163]
Length = 726
Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 241/658 (36%), Positives = 353/658 (53%), Gaps = 35/658 (5%)
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
+ ++ G F F FV + E ++ +FI N A+ D VL I K +
Sbjct: 8 SENFINGTFVANPKGFGFVKTD--EGQDDLFIGHSNTNLAMQSDEVLASIIHPGKDGRVP 65
Query: 125 EGRVVKIIEHRKNTVVGILEKSKNFAFV-----------IPTGSFGKDI-----YIPNSK 168
EG++ KI+ H VVGI N + I T +F + Y+ + K
Sbjct: 66 EGKIEKILSHANQEVVGIFRSGVNENDLPNRSNLNPNDYIGTITFNDEKLQEYKYLVDKK 125
Query: 169 IANADNKDLVAVEITFWGDDDRKPE---GKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
++D V + + DR P G + ++G S I ++Y + +
Sbjct: 126 GLQPQDRDSVTATTSQFPTSDR-PNLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSNYPE 184
Query: 226 EAMQQTKEIIK----EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIV 281
+A QQ K I + + + R + + +ITIDGAD KD+DDAV V KL NGNY L V
Sbjct: 185 DAAQQAKNIPQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGV 244
Query: 282 AIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEM 341
IADVS+YV +T LD EA RG SVYL DRV+PM P EISNGI SLN E++L SCEM
Sbjct: 245 HIADVSNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCEM 304
Query: 342 EIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKIL 401
EI+ +G VV +++ S+I+S RMTY +N ILDGD+ +Y+D+ EM+ QM +L KIL
Sbjct: 305 EINQEGQVVKHKIQPSIIRSHARMTYDSINKILDGDQAETAKYADLSEMIHQMGDLHKIL 364
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
+ RG+I+FE E ++I+D + + VL++DRG GE++IE FM+AANETVAE
Sbjct: 365 AAMRKKRGAIEFETDEAEIIVDAKGHPTD-VLVRDRGIGERMIESFMLAANETVAEHFDH 423
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLV 520
L + +YR HE P+ +K+V E + G+ I + NL PK FQ ++ M++
Sbjct: 424 LHVPFLYRVHEVPEGDKVVNFFEFMRAIGHPIKADPKNLRPKDFQAALDAVAGLPEEMMI 483
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----FSTIDNSI 575
+LRA KQA Y+ + I HFG+A+ YTHFTSPIRRY DL+VHR++ F T +S
Sbjct: 484 QTMMLRATKQAHYSPQPIGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGTGPSST 543
Query: 576 KPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFF 635
+ L +I S+ ER A+ AE + +K EYM+ +G+ + +V + +F
Sbjct: 544 DAVR-GKLPQIGIDTSERERRAVDAERATNDMKFAEYMEDHIGDIYDGVVNSALKFGLFI 602
Query: 636 ETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
IE I+T + Y +DE + ++F +G KV V + A+ T +I
Sbjct: 603 SLPNTIEGLAHISTMKDDIYQYDETRQALIGRTKHRIFAIGQKVKVRVINANKETRKI 660
>gi|116491421|ref|YP_810965.1| Exoribonuclease R [Oenococcus oeni PSU-1]
gi|116092146|gb|ABJ57300.1| Exoribonuclease R [Oenococcus oeni PSU-1]
Length = 726
Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 241/658 (36%), Positives = 353/658 (53%), Gaps = 35/658 (5%)
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGA 124
+ ++ G F F FV + E ++ +FI N A+ D VL I K +
Sbjct: 8 SENFINGTFVANPKGFGFVKTD--EGQDDLFIGHSNTNLAMQSDEVLASIIHPGKDGRVP 65
Query: 125 EGRVVKIIEHRKNTVVGILEKSKNFAFV-----------IPTGSFGKDI-----YIPNSK 168
EG++ KI+ H VVGI N + I T +F + Y+ + K
Sbjct: 66 EGKIEKILSHANQEVVGIFRSGVNENDLPNRSNLNPNDYIGTITFNDEKLQEYKYLVDKK 125
Query: 169 IANADNKDLVAVEITFWGDDDRKPE---GKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
++D V + + DR P G + ++G S I ++Y + +
Sbjct: 126 GLQPQDRDSVTATTSQFPTSDR-PNLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSNYPE 184
Query: 226 EAMQQTKEIIK----EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIV 281
+A QQ K I + + + R + + +ITIDGAD KD+DDAV V KL NGNY L V
Sbjct: 185 DAAQQAKNIPQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGV 244
Query: 282 AIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEM 341
IADVS+YV +T LD EA RG SVYL DRV+PM P EISNGI SLN E++L SCEM
Sbjct: 245 HIADVSNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCEM 304
Query: 342 EIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKIL 401
EI+ +G VV +++ S+I+S RMTY +N ILDGD+ +Y+D+ EM+ QM +L KIL
Sbjct: 305 EINQEGQVVKHKIQPSIIRSHARMTYDSINKILDGDQAETAKYADLSEMIHQMGDLHKIL 364
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
+ RG+I+FE E ++I+D + + VL++DRG GE++IE FM+AANETVAE
Sbjct: 365 AAMRKKRGAIEFETDEAEIIVDAKGHPTD-VLVRDRGIGERMIESFMLAANETVAEHFDH 423
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLV 520
L + +YR HE P+ +K+V E + G+ I + NL PK FQ ++ M++
Sbjct: 424 LHVPFLYRVHEVPEGDKVVNFFEFMRAIGHPIKADPKNLRPKDFQAALDAVAGLPEEMMI 483
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----FSTIDNSI 575
+LRA KQA Y+ + I HFG+A+ YTHFTSPIRRY DL+VHR++ F T +S
Sbjct: 484 QTMMLRATKQAHYSPQPIGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGTGPSST 543
Query: 576 KPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFF 635
+ L +I S+ ER A+ AE + +K EYM+ +G+ + +V + +F
Sbjct: 544 DAVR-GKLPQIGIDTSERERRAVDAERATNDMKFAEYMEDHIGDIYDGVVNSALKFGLFI 602
Query: 636 ETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
IE I+T + Y +DE + ++F +G KV V + A+ T +I
Sbjct: 603 SLPNTIEGLAHISTMKDDIYQYDETRQALIGRTKHRIFAIGQKVKVRVINANKETRKI 660
>gi|77919746|ref|YP_357561.1| exoribonuclease RNase R [Pelobacter carbinolicus DSM 2380]
gi|77545829|gb|ABA89391.1| exoribonuclease RNase R [Pelobacter carbinolicus DSM 2380]
Length = 720
Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats.
Identities = 232/701 (33%), Positives = 378/701 (53%), Gaps = 15/701 (2%)
Query: 1 MNLEKDLEKIKELLKDV-KYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHR 59
MNL D + +K L ++ K L+ QI S + S +++ ++ S D G + +K
Sbjct: 1 MNLTPD-DLLKLLSQNRGKPLSGRQIVSQFQLSRDQRQHALRMLDSLADEGLVRRVRKGL 59
Query: 60 LSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKK 119
SLP +S V G + + + FV E + + + +FIP +DGD V V + ++
Sbjct: 60 FSLPRSSEMVVGKVSVHRQGYGFVIPEAAGQAD-VFIPARYMREVMDGDRVAVRV--QRS 116
Query: 120 SDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLV 178
S G EGRV++++ T+VG + V+P+ + I + + +A DLV
Sbjct: 117 SRGGYEGRVLRVLSRAHQTIVGTYRPGHGYGMVLPSDPALSHGIMLLSPAPGDAHAGDLV 176
Query: 179 AVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI---I 235
V I + P G ++++LG + + I A Y+ L +FS ++Q + I +
Sbjct: 177 VVSIAQYPGRREPPRGVMVEVLGDPADPQVEILAAAYKFNLPREFSTATLEQARSIAPVV 236
Query: 236 KEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETV 295
+EE D + R++L + +TIDG AKD DDAV V + G +L VAIADV HYV ++
Sbjct: 237 REE-DLAGREDLRSTLFVTIDGETAKDFDDAVAVSREPGGCMRLWVAIADVGHYVAPDSP 295
Query: 296 LDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVY 355
+D +A+ RG SVY LPM P+ +SNGICSLN ++L + EM D +G ++ +
Sbjct: 296 IDRDAKERGTSVYFPGSCLPMLPEALSNGICSLNPGVDRLVLTAEMLFDKQGVMLESRFF 355
Query: 356 KSVIKSVHRMTYKDVNAILDGDKDLINEYSD-IYEMLKQMLELSKILRIKKFTRGSIDFE 414
+VI S R+TY++V +L SD + L M EL+ L+ +F RGS+DF+
Sbjct: 356 HAVICSKARLTYREVADVLAAGAIHNPALSDPLISQLHHMSELASRLQAMRFRRGSLDFD 415
Query: 415 LPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKP 474
LPE +++LD + +++L +R ++IE+FM+AANE VA+ + + +YR HE P
Sbjct: 416 LPEPEIVLDL-QGRPDQILRAERTVAHRLIEEFMLAANEAVAKFLSDRNIPLLYRIHESP 474
Query: 475 DREKIVTLNEILSKFGYK-IPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARY 533
+ EK+ L+ + D++ P Q ++E +D+ +V++ +LR++KQARY
Sbjct: 475 EVEKLFAFQTFLAHLNIGLVVTDDSVSPTVLQGVLETVRDRPEERMVNQFLLRSMKQARY 534
Query: 534 TVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKT 593
+ +++ HFGLAS Y HFTSPIRRY DL+VHR+L + S + +L+E+ S+
Sbjct: 535 SSDNLGHFGLASDCYCHFTSPIRRYPDLVVHRILSRALSTSKRSSATVNLEELGDLTSQK 594
Query: 594 ERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECSWDITTAI- 651
ER AM+AE + V ++ ++M +VG+ + V IF E D +E + T
Sbjct: 595 ERRAMEAERDIVALRRCQFMADKVGQVFDACVADVQPFGIFVELKDVFVEGLVHVATLTD 654
Query: 652 NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+YY FDEE + + K+F +G+ V V L K +L E+
Sbjct: 655 DYYEFDEELHRLVGQRRRKIFRIGEVVTVQLVKVNLERREL 695
>gi|92090006|ref|ZP_01274919.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Lactobacillus reuteri 100-23]
gi|91803213|gb|EAS88099.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Lactobacillus reuteri 100-23]
Length = 801
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 238/646 (36%), Positives = 364/646 (56%), Gaps = 45/646 (6%)
Query: 71 GVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKK--SDKGAEGRV 128
G F F FVD + + ++I + +AL+GD V V+I K SD+G EG+V
Sbjct: 74 GTFHGNDKGFGFVDYD--PDLPDMYINPDHTLHALNGDQVEVKILRPAKAGSDQGPEGQV 131
Query: 129 VKIIEHRKNTVVG--------------ILEKSKNFAFVIPTGSFGKDIYIPNSKIANADN 174
+I+EH+ VVG IL K K + Y+ + + D
Sbjct: 132 TRIVEHKYENVVGEFKQATIGDDYIGEILLKDKKLS--------QYHFYVTDKGLKPLDG 183
Query: 175 KDLVAVEITFWGDDDRKPE---GKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQT 231
+ + A T+ +D PE G + +++G I ++IY + +F E M+Q
Sbjct: 184 QVVTATVETY--PNDEAPEVMTGAVTEVIGDKDEPGIDIMSVIYAHDVPHEFPKEVMEQA 241
Query: 232 KEI----IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVS 287
+I + EE R ++T+ ++TID ++KDLDDAV K++NG+Y L V IADV+
Sbjct: 242 NKIPLHVLPEE--KKGRVDITDQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVT 299
Query: 288 HYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKG 347
HYVK T LD EA RG SVYL DRV+PM PK +SNGICSLN EE+L SCEMEID +G
Sbjct: 300 HYVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRLSNGICSLNPNEERLAMSCEMEIDEQG 359
Query: 348 DVVNYEVYKSVIKSVHRMTYKDVNAILDG-DKDLINEYSDIYEMLKQMLELSKILRIKKF 406
+VN+ +++SV+KS RMTYK VN IL+ D + +Y D+ M + M E+ K+L +
Sbjct: 360 KIVNHRIFQSVMKSHARMTYKAVNKILESHDAKTMKQYEDLVPMFETMGEIHKLLLKNRK 419
Query: 407 TRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS 466
RG+IDFE PE K+I+DE + + + L++RG E++IE FM+AANETVAE + +
Sbjct: 420 KRGAIDFEAPEAKIIVDEKGHPTD-IQLRNRGLSERMIESFMLAANETVAEHYFKERVPF 478
Query: 467 IYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+YR HE PD ++I + + L+ FG + + N+ P Q++++ +V +L
Sbjct: 479 LYRIHETPDSDRIKSFVDFLAVFGIDVHGDIKNVKPGMLQKVLKDVAGTPEEQMVQVMML 538
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-FSTIDNSIKPFKEA--- 581
R+++QA+Y+ E++ HFGL + +YTHFTSPIRRY D VHR++ + +P K+
Sbjct: 539 RSMQQAKYSDEELGHFGLGAKYYTHFTSPIRRYPDDTVHRLIKWYEEHGKNEPAKDHWRD 598
Query: 582 DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHI 641
L EIA+H S TER + E + +K EYM+ VGET + +V+ + +F E +
Sbjct: 599 KLPEIAEHTSVTERRGIDTERDVDSMKKAEYMEDHVGETFDAVVSSVMKFGLFVELPNTV 658
Query: 642 ECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
E I+ +YY + E++ + +S ++F +G + V L +AD
Sbjct: 659 EGLVHISVMKDDYYEYSEKHMALIGRNSHRIFQMGQPIKVKLVRAD 704
>gi|145621752|ref|ZP_01777718.1| ribonuclease R [Petrotoga mobilis SJ95]
gi|144947776|gb|EDJ82804.1| ribonuclease R [Petrotoga mobilis SJ95]
Length = 737
Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats.
Identities = 264/717 (36%), Positives = 395/717 (55%), Gaps = 27/717 (3%)
Query: 4 EKDLEK-IKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSL 62
E +LEK I E++ + + S +K + I+ + G +I D +++
Sbjct: 3 EDNLEKQILEIIDKNPTIQKELYESLNALEKSEKAQIRKILNKLLSEGKIIKDSQNQYRK 62
Query: 63 PENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDK 122
+ + V + AFV D E I + E +L D VLVEI K + K
Sbjct: 63 LDENMAVGTIEFTKSGNMAFVQCSDGSE---IAVKVENSGISLHKDLVLVEIIGKWRDLK 119
Query: 123 GAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT-GSFGKDIYIPNSKIANADNKDLVAVE 181
EGRVV+I++ VVG + F FVIP D Y+ I A N +V +
Sbjct: 120 --EGRVVRILKRELKYVVGEFVRKGIFGFVIPIDAKINTDFYVAPEGIGKAKNGQIVKAK 177
Query: 182 ITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEK--FSNEAMQQTKEIIKE-- 237
IT + +KPE +I+ +LG + + +I++ GL E F + +Q+ KE+ K+
Sbjct: 178 ITKYQSPTKKPEVEIVDVLGDKDDPSIDLPIVIFKHGLPEPGYFPPKVLQEAKELPKKLS 237
Query: 238 EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLD 297
E + + RK+ +I TIDG AKD DDAV ++KL+NGNY L V IADVSHYVK + LD
Sbjct: 238 ENEINGRKDFRKETIFTIDGDTAKDFDDAVGIKKLDNGNYLLGVHIADVSHYVKSNSALD 297
Query: 298 LEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKS 357
EA RG SVYL+D V+PM P E+SN ICSL E E++LT S MEID G++VN ++Y
Sbjct: 298 REAYKRGTSVYLIDTVIPMLPFELSNWICSLVEGEDRLTMSLLMEIDPYGNLVNSKIYNG 357
Query: 358 VIKSVHRMTYKDVNAILDGD--KDLINEYSDIYEMLKQMLELSKILRIKKFTRGS-IDFE 414
VI+S R+TY+ VN +L + +++ E + L+ M EL ++L K+ RGS ID E
Sbjct: 358 VIRSAKRLTYRKVNELLSDNCSEEVKKEIEFLKPELEMMRELMELLSEKRKERGSIIDIE 417
Query: 415 LPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKP 474
E+ DE V+ ++ +RG EK+IE+FM+ ANETVA L IYR HE P
Sbjct: 418 SNEVHFEFDE-KGYVKDIIPVERGLSEKMIEEFMVLANETVASYFDVQGLPFIYRIHENP 476
Query: 475 DREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYT 534
D + ++ L L G + N+HPK QEI+E++K+ S + ++R++K+A Y+
Sbjct: 477 DPDVLLQLRNYLDMLGINVKFPQNIHPKVLQEILEKTKNHPLSKNIQMMLVRSMKRALYS 536
Query: 535 VEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKPFKEADLDEIA 587
E++ HFGLASS YTHFTSPIRRY DL+VHR+L I IK + E L EIA
Sbjct: 537 EENVGHFGLASSSYTHFTSPIRRYPDLVVHRLLKEFIKYKGTLSKKEIKKYSEM-LPEIA 595
Query: 588 QHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDI 647
++ S+ ERVA +AE + + +K VEY+ + +GE V +TG + +F E + +
Sbjct: 596 KNSSEMERVADQAEWDLIDMKKVEYISRHIGEVFWVYITGVTRFGLFVEIPQKMISGLIH 655
Query: 648 TTAI--NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPL--DDF 700
+ + +YY +DE + ++ + V+ +GDK+ + +AD + E+ +P DDF
Sbjct: 656 ISELSDDYYIYDERDNTLKGERTGNVYRIGDKLQAKVVRADKIGTEVDFIPYTEDDF 712
>gi|150021389|ref|YP_001306743.1| ribonuclease R [Thermosipho melanesiensis BI429]
gi|149793910|gb|ABR31358.1| ribonuclease R [Thermosipho melanesiensis BI429]
Length = 704
Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats.
Identities = 243/644 (37%), Positives = 374/644 (58%), Gaps = 22/644 (3%)
Query: 63 PENSGYVKGVFRIIKN-KFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSD 121
P ++ G +N AFV EE I +P E+ NA+ D V+VEI E K D
Sbjct: 62 PITKNHIVGTIEFTRNGTIAFVWTSSGEE---IAVPVEKAGNAIHKDKVIVEI-EGKWYD 117
Query: 122 KGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAV 180
EGRV+KIIEH +VG + + AF+IP D Y+P NA V
Sbjct: 118 I-PEGRVIKIIEHGLKKIVGTFQPVRKAAFLIPDDPKIQYDFYVPIEFFNNAKPGQKVVG 176
Query: 181 EITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI- 239
+I + + P K++++LG + + +I + ++ F ++ M++ I ++ +
Sbjct: 177 KIIKYPTPTKNPVAKVVEVLGYADDPATDFPTVIVKHDINLSFPDDVMKEAANIPEKVLP 236
Query: 240 -DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDL 298
+ RK+ + I+TIDG+DAKD DDAV V+KL+NGNY L V IADVSHYVK+ + LD
Sbjct: 237 KELKKRKDFRDELIVTIDGSDAKDFDDAVSVKKLKNGNYLLGVHIADVSHYVKEGSALDK 296
Query: 299 EARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSV 358
EA RG S+YL+DRV+PM P ++S+GICSL + E++L S MEI+ +G V+NYEV +
Sbjct: 297 EAFFRGTSIYLIDRVIPMLPFKLSHGICSLVQGEDRLVMSLIMEINKEGKVINYEVTPGI 356
Query: 359 IKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSI-DFELPE 417
I+S R+ Y DVN + +G K+ I + D+ + L M EL ILR + RG+I D E E
Sbjct: 357 IRSKRRLVYDDVNDLFEGKKEAIEKIGDLKDTLLLMKELKNILRNARKKRGAILDIEGGE 416
Query: 418 LKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDRE 477
+K+ILDE + ++ ++ + RGE E IIE+FMI ANET+AE + L +YR HEKP+ +
Sbjct: 417 VKIILDEKGHAID-IIPRKRGETETIIEEFMIKANETIAEIFHKYNLPFVYRIHEKPEPD 475
Query: 478 KIVTLNEILSKFG--YKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTV 535
I+ L LS G +K+P + + QE++E++ + + K ++R++K+A Y+
Sbjct: 476 TIIQLKNYLSAIGIDFKVPQ--KITSRILQELLEKTSNHPLRDSIEKLLVRSMKRAVYSS 533
Query: 536 EDISHFGLASSHYTHFTSPIRRYSDLMVHRVL------FSTIDNSIKPFKEADLDEIAQH 589
+I HFGLAS YTHFTSPIRRY DL+VHR++ + K L +IA +
Sbjct: 534 TNIGHFGLASYAYTHFTSPIRRYPDLIVHRLIKKFLSKKDKLSKKQKKLLNDKLAKIAAY 593
Query: 590 ISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECSWDIT 648
SK ERVA +AE + V +K ++Y+ +GET +V++T + +F E +++I I+
Sbjct: 594 SSKRERVADEAEWDYVALKKIDYISNHIGETFDVVITSVTKFGLFVEIIEKNISGLIHIS 653
Query: 649 TAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
T +YY +DEE + + K++ +GDK+ + A+ ++I
Sbjct: 654 TLDDYYLYDEEKSILVGKRNGKIYKIGDKLKAKVVNANKTRMQI 697
>gi|148543630|ref|YP_001271000.1| ribonuclease R [Lactobacillus reuteri F275]
gi|148530664|gb|ABQ82663.1| ribonuclease R [Lactobacillus reuteri F275]
Length = 801
Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats.
Identities = 237/646 (36%), Positives = 362/646 (56%), Gaps = 45/646 (6%)
Query: 71 GVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKK--SDKGAEGRV 128
G F F FVD + + ++I + AL+GD V V++ K SD+G EG+V
Sbjct: 74 GTFHGNDKGFGFVDYD--PDLPDMYINPDHTLYALNGDQVEVKVLRPAKAGSDQGPEGQV 131
Query: 129 VKIIEHRKNTVVG--------------ILEKSKNFAFVIPTGSFGKDIYIPNSKIANADN 174
+I+EH+ VVG IL K K + Y+ + + D
Sbjct: 132 TRIVEHKYENVVGEFKQATIGDDYIGEILLKDKKLS--------QYHFYVTDKGLKPLDG 183
Query: 175 KDLVAVEITFWGDDDRKPE---GKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQT 231
+ + A T+ D PE G + +++G I ++IY + +F E M+Q
Sbjct: 184 QVVTATVETY--PSDEAPEVMTGAVTEVIGDKDEPGIDIMSVIYAHDVPHEFPKEVMEQA 241
Query: 232 KEI----IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVS 287
+I + EE R ++T+ ++TID ++KDLDDAV K++NG+Y L V IADV+
Sbjct: 242 NKIPLHVLPEE--KKGRVDITDQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVT 299
Query: 288 HYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKG 347
HYVK T LD EA RG SVYL DRV+PM PK +SNGICSLN EE+L SCEMEID +G
Sbjct: 300 HYVKPGTPLDQEAFKRGTSVYLTDRVVPMLPKRLSNGICSLNPNEERLAMSCEMEIDEQG 359
Query: 348 DVVNYEVYKSVIKSVHRMTYKDVNAILDG-DKDLINEYSDIYEMLKQMLELSKILRIKKF 406
+VN+ +++SV+KS RMTYK VN IL+ D + +Y D+ M + M E+ K+L +
Sbjct: 360 KIVNHRIFQSVMKSHARMTYKAVNKILESHDAKTMKQYEDLVPMFETMGEIHKLLLKNRK 419
Query: 407 TRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS 466
RG+IDFE PE K+I+DE + + + L++RG E++IE FM+AANETVAE + +
Sbjct: 420 KRGAIDFEAPEAKIIVDEKGHPTD-IQLRNRGLSERMIESFMLAANETVAEHYFKERVPF 478
Query: 467 IYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+YR HE PD ++I + + L+ FG + + N+ P Q++++ +V +L
Sbjct: 479 LYRIHETPDSDRIKSFVDFLAVFGIDVHGDIKNVKPGMLQKVLKDVAGTPEEQMVQVMML 538
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-FSTIDNSIKPFKEA--- 581
R+++QA+Y+ E++ HFGL + +YTHFTSPIRRY D VHR++ + +P K+
Sbjct: 539 RSMQQAKYSDEELGHFGLGAKYYTHFTSPIRRYPDDTVHRLIKWYEEHGKNEPAKDHWRD 598
Query: 582 DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHI 641
L EIA+H S TER + E + +K EYM+ VGET + +V+ + +F E +
Sbjct: 599 KLPEIAEHTSVTERRGIDTERDVDSMKKAEYMEDHVGETFDAVVSSVMKFGLFVELPNTV 658
Query: 642 ECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
E I+ +YY + E++ + +S ++F +G + V L +AD
Sbjct: 659 EGLVHISVMKDDYYEYSEKHMALIGRNSHRIFQMGQPIKVKLVRAD 704
>gi|110004071|emb|CAK98410.1| probable ribonuclease r protein [Spiroplasma citri]
Length = 705
Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats.
Identities = 253/675 (37%), Positives = 400/675 (59%), Gaps = 35/675 (5%)
Query: 35 KKKDNKIII--LSWIDSGDLI-MDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEK 91
K DNK+++ L +++ ++I + ++HR + Y++GV I K F F+ + +E +
Sbjct: 29 KIDDNKMLLKALVELENDNIIGVTQQHRFYYFDPKIYLRGVISINKKGFGFI--KINENQ 86
Query: 92 EGIFIPKEEFNNALDGDTVLVEITEKKKSD---KGAEGRVVKIIEHRKNTVVGILEKSKN 148
E ++ +++ NNALD D VL I +K+K+D K AE +V+K+++ VVG+++K+++
Sbjct: 87 EEYYVKQDDLNNALDQDQVLF-ILKKQKNDNNSKKAEAQVIKVLKRNNEYVVGVIKKNRH 145
Query: 149 FAFVIPTGSFGKDIYIPNSKIANADN---KDLVAVEITFWGDDDRKPEGKIIKILGSSTN 205
+ + ++I N D +V IT + + KII+I+G++
Sbjct: 146 QQKYLEI--LNNKLTQYRAEIINLDEAIENTIVKGIITSINSKNNLMQVKIIEIIGNTNQ 203
Query: 206 SKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEIDYS------NRKNLTNLSIITIDGAD 259
+ A+++ + KF+ EA+ + +I + ID + +R++L +TIDG D
Sbjct: 204 VGVDVLAILHEFNIRTKFNEEALTEANQI-NQNIDVATMLANKSRRDLQTEMFVTIDGND 262
Query: 260 AKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPK 319
+KD DDA+ V+K +NGNY L+VAIADV+HY + LD EA RG SVYL+DRV+PM P+
Sbjct: 263 SKDFDDAILVKKNQNGNYLLLVAIADVAHYAPHNSYLDKEAFERGCSVYLIDRVVPMLPE 322
Query: 320 EISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKD 379
++SNGICSLN E +LT CEMEID +G VVN +Y++VI S R+TY +VN + +K+
Sbjct: 323 KLSNGICSLNPFEPRLTLICEMEIDQQGHVVNSSIYEAVIISKARLTYDEVNKLFCQEKN 382
Query: 380 LINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGE 439
I+ ++I +ML +L +IL KK G +DF+L E K ++D+ N K++ +++++R +
Sbjct: 383 HIS--AEIAQMLFLAQQLYQILVWKKEHDGVVDFDLDEPKFVVDK-NGKIKDIIVRERAD 439
Query: 440 GEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDN 498
EK+IE FMI ANETVAE IYW++L +YR H+KP +K+ L LS G I +N
Sbjct: 440 AEKLIESFMIRANETVAETIYWMDLPFVYRVHDKPKPKKLFDLYTQLSYLGLNIKGKLEN 499
Query: 499 LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRY 558
+H K Q+I+ + KDKE ++ +LR++++A+Y+ + HFGLAS YTHFTSPIRRY
Sbjct: 500 IHSKDLQQILNKLKDKENFKVISALVLRSMEKAKYSDINDGHFGLASWCYTHFTSPIRRY 559
Query: 559 SDLMVHRVLFSTIDNSIKPFKEADLDEI-------AQHISKTERVAMKAEDESVRIKLVE 611
DL+VHR+L + K DL++ +Q S E AM+ E E ++K E
Sbjct: 560 PDLVVHRLLKEYLFQG--KVKITDLEQTRAFVSHASQQSSLAELRAMECEREVDKMKEAE 617
Query: 612 YMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDK 670
YM+ ++G N ++ G IF E IE IT N YY FDE++ + K
Sbjct: 618 YMEDKIGYEYNGIIAGVTSFGIFVELPNTIEGLVHITDLKNDYYVFDEKSLKLIGERKRK 677
Query: 671 VFYLGDKVDVVLKKA 685
++LG KV + +KKA
Sbjct: 678 EYFLGKKVRIRVKKA 692
>gi|146319045|ref|YP_001198757.1| Exoribonuclease R [Streptococcus suis 05ZYH33]
gi|146321252|ref|YP_001200963.1| Exoribonuclease R [Streptococcus suis 98HAH33]
gi|145689851|gb|ABP90357.1| Exoribonuclease R [Streptococcus suis 05ZYH33]
gi|145692058|gb|ABP92563.1| Exoribonuclease R [Streptococcus suis 98HAH33]
Length = 789
Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats.
Identities = 241/703 (34%), Positives = 405/703 (57%), Gaps = 23/703 (3%)
Query: 9 KIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWID-SGDLIMDKKHRLSLP---- 63
+I +K+V +T+DQ+ S K + + ++S ++ S L+ D R++LP
Sbjct: 4 EIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEGSRQLVFDNAGRITLPAPKI 63
Query: 64 -ENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDK 122
+N ++G+FR K+ F FV + EE++ +F+ +++ N A++GD V V I + K
Sbjct: 64 SKNKVTLQGIFRAHKSGFGFVTID--EEEDDLFVSRDDVNFAIEGDRVEVAIKKVADRFK 121
Query: 123 G--AEGRVVKIIEHRKNTVVGIL---EKSKNFAFVIPTGS--FGKDIYIPNSKIANADNK 175
G AE V+ I+EH T VG++ E +A I + + + IYI S +
Sbjct: 122 GTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSKNQKIAQKIYIKKSPLV-LTGT 180
Query: 176 DLVAVEITFWGDDDRKPEGKIIK-ILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI 234
+++ V+I + + R I+ ++G + + ++ + +F +E + + +
Sbjct: 181 EILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEANRV 240
Query: 235 IKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKK 292
+ E D+ R +L + I TIDGADAKDLDDAV++++L+NGN +L V IADVS+YV +
Sbjct: 241 PESPSEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTE 300
Query: 293 ETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNY 352
+ LD EA RG SVY+ DRV+PM P+ +SNGICSLN ++LT S MEID KG VV +
Sbjct: 301 GSALDQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDCKGKVVKH 360
Query: 353 EVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSID 412
+ ++VIK+ RMTY DVN ++ G+K+ +++Y I ++ M++L + L ++ RG+++
Sbjct: 361 WIGQTVIKTTFRMTYSDVNDMIAGNKEKLDKYKTIVPSVELMVKLHETLETMRYKRGALN 420
Query: 413 FELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHE 472
F+ E K+I+++D V+ + L+ RG E++IE FM+AANE VAE L+L IYR HE
Sbjct: 421 FDTAEAKIIVNKDGLPVD-IQLRQRGIAERMIESFMLAANECVAEHFAKLDLPFIYRIHE 479
Query: 473 KPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQA 531
+P +K+ + + FG + ++ Q+++ER KD+ + +++ +LR+++QA
Sbjct: 480 EPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQA 539
Query: 532 RYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK--EADLDEIAQH 589
RY+ + H+GL + YTHFTSPIRRY DL+VHR++ N + + E + E+A+
Sbjct: 540 RYSEHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVREYGHNPSEKAEHFEQVIPELAKS 599
Query: 590 ISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT 649
S ER A+ AE E +K E+MQ+ VG+ + +V+ + +F E +E +T
Sbjct: 600 SSSLERRAIDAEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHVTN 659
Query: 650 AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
YY F E ++ S +VF +G + + L +AD +T EI
Sbjct: 660 LNEYYQFHERTLTLQGEKSGRVFRVGQPIRIKLTRADKMTGEI 702
>gi|104774567|ref|YP_619547.1| Exoribonuclease R [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423648|emb|CAI98602.1| Exoribonuclease R [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
Length = 789
Score = 362 bits (928), Expect = 6e-98, Method: Composition-based stats.
Identities = 247/666 (37%), Positives = 384/666 (57%), Gaps = 36/666 (5%)
Query: 52 LIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVL 111
+I D R L + + V+GVFR F FV + D EE + +FI + ALDGD V
Sbjct: 56 IITDGNGRYQLAKENTEVEGVFRANDKGFGFV-RLDDEEADDVFINSDATKLALDGDRVK 114
Query: 112 VEITEKKK--SDKGAEGRVVKIIEHRKNTVVG-------ILEKSKNFA-FVIPTGSFGKD 161
V+IT + KG EG+V +I+E +++VG + K +FA +VIPT K
Sbjct: 115 VKITAGGNPWNGKGPEGQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVIPTNKKFKK 174
Query: 162 --IYIPNSKIANADNKDLVAVEITFWGDDDRKPE--GKIIKILGSSTNSKNMIDALIYRE 217
+Y+ + + D+V V + + +D + G +++I+G+ + I +++
Sbjct: 175 YRVYVSENGLI-PQMGDMVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIMSIVAEH 233
Query: 218 GLSEKFSNEAMQQTKEI----IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLE 273
+ ++ +A++Q I +EE + R+++T+ +TIDG D+KD DDAV + KL+
Sbjct: 234 DIRTEWPEDALEQANAIPDHVTEEERHEAGRRDITDQPAVTIDGDDSKDFDDAVVLWKLD 293
Query: 274 NGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEE 333
NGNY L V IADV+HYVK+ T LD EA RGNS YLVDRV+PM P +SNGICSLNE +
Sbjct: 294 NGNYHLGVHIADVAHYVKEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVD 353
Query: 334 KLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDG---DKDLINEYSDIYEM 390
+L SC+MEI +G+ V+Y++Y +V++S R+TY VN L D DL ++Y + M
Sbjct: 354 RLVLSCDMEITPEGERVSYDIYPAVMRSHGRLTYNKVNQALRADVPDSDLEDKYVKVRPM 413
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
LK M L +IL ++ RGSIDFE PE K+I+DE V+ ++L RG EK+IE FM+
Sbjct: 414 LKDMAALHEILYKQRHARGSIDFEEPEAKIIVDEKGKPVD-IVLHSRGTAEKMIESFMLL 472
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKI---PNFDNLHPKQFQEI 507
ANETVAE Y ++ +YR HE P+ ++I E S FG + PN ++ P Q++
Sbjct: 473 ANETVAEAYYRKKVPFLYRVHETPEADRISRFFEFCSAFGLNVKADPN--DIKPLDLQKV 530
Query: 508 IERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL 567
+ ++ +V +LR+LKQA Y+ + + HFG+A+ +YTHFTSPIRRYSD MVHR++
Sbjct: 531 VTKTLGTSEESVVQMMMLRSLKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMVHRMI 590
Query: 568 FSTI-----DNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
+ + D+ + FKE +L E A S ER ++ E + +K+ EYM +VG
Sbjct: 591 HAYLEEGMGDDVKEHFKE-ELSEAADQTSMQERRSIDTERATNDLKMTEYMADQVGNKFE 649
Query: 623 VMVTGFAQKKIFFETDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+V+ +F + + +E I+ +YY++DE++ + + K + +G + VV
Sbjct: 650 AVVSSVTSFGMFVQLENTVEGLIHISNLKDDYYSYDEKSMTLTGRTTHKKYKVGMPIKVV 709
Query: 682 LKKADL 687
L A++
Sbjct: 710 LTNANV 715
>gi|116514688|ref|YP_813594.1| Exoribonuclease R [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116094003|gb|ABJ59156.1| Exoribonuclease R [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 789
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 245/666 (36%), Positives = 384/666 (57%), Gaps = 36/666 (5%)
Query: 52 LIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVL 111
+I D R L + + V+GVFR F FV + D EE + +FI + ALDGD V
Sbjct: 56 IITDGNGRYQLAKENTEVEGVFRANDKGFGFV-RLDDEEADDVFINSDATKLALDGDRVK 114
Query: 112 VEITEKKK--SDKGAEGRVVKIIEHRKNTVVG-------ILEKSKNFA-FVIPTGSFGKD 161
V+IT + KG EG+V +I+E +++VG + K +FA +VIPT K
Sbjct: 115 VKITAGGNPWNGKGPEGQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVIPTNKKFKK 174
Query: 162 --IYIPNSKIANADNKDLVAVEITFWGDDDRKPE--GKIIKILGSSTNSKNMIDALIYRE 217
+Y+ + + D+V V + + +D + G +++I+G+ + I +++
Sbjct: 175 YRVYVSENGLI-PQMGDMVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIMSIVAEH 233
Query: 218 GLSEKFSNEAMQQTKEI----IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLE 273
+ ++ +A++Q I +EE + R+++T+ +TIDG D+KD DDAV + KL+
Sbjct: 234 DIRTEWPEDALEQANAIPDHVTEEERHEAGRRDITDQPAVTIDGDDSKDFDDAVVLWKLD 293
Query: 274 NGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEE 333
NGNY L V IADV+HYVK+ T LD EA RGNS YLVDRV+PM P +SNGICSLNE +
Sbjct: 294 NGNYHLGVHIADVAHYVKEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVD 353
Query: 334 KLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDG---DKDLINEYSDIYEM 390
+L SC+MEI +G+ V+Y++Y ++++S R+TY VN L D DL ++Y + M
Sbjct: 354 RLVLSCDMEITPEGERVSYDIYPALMRSHGRLTYNKVNQALRADVPDSDLEDKYVKVRPM 413
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
LK M L ++L K+ RG+IDFE PE K+I+DE V+ ++L RG EK+IE FM+
Sbjct: 414 LKDMAALHEVLYKKRHARGAIDFEEPEAKIIVDEKGKPVD-IVLHSRGTAEKMIESFMLL 472
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKI---PNFDNLHPKQFQEI 507
ANETVAE Y ++ +YR HE P+ ++I E S FG + PN ++ P Q++
Sbjct: 473 ANETVAEAYYRKKVPFLYRVHETPEADRISRFFEFCSAFGLNVKADPN--DIKPLDLQKV 530
Query: 508 IERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL 567
+ ++ +V +LR+LKQA Y+ + + HFG+A+ +YTHFTSPIRRYSD MVHR++
Sbjct: 531 VTKTLGTSEESVVQMMMLRSLKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMVHRMI 590
Query: 568 FSTI-----DNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
+ + D+ + FKE +L E A S ER ++ E + +K+ EYM +VG
Sbjct: 591 HAYLEEGMGDDVKEHFKE-ELSEAADQTSMQERRSIDTERATNDLKMTEYMADQVGNKFE 649
Query: 623 VMVTGFAQKKIFFETDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+V+ +F + + +E I+ +YY++DE++ + + K + +G + VV
Sbjct: 650 AVVSSVTSFGMFVQLENTVEGLIHISNLKDDYYSYDEKSMTLTGRTTHKKYKVGMPIKVV 709
Query: 682 LKKADL 687
L A++
Sbjct: 710 LTNANV 715
>gi|81097425|ref|ZP_00875709.1| 3'-5' exoribonuclease, VacB and RNase II [Streptococcus suis
89/1591]
gi|80976532|gb|EAP40131.1| 3'-5' exoribonuclease, VacB and RNase II [Streptococcus suis
89/1591]
Length = 789
Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats.
Identities = 240/700 (34%), Positives = 406/700 (58%), Gaps = 27/700 (3%)
Query: 14 LKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWID-SGDLIMDKKHRLSLP-----ENSG 67
+K+V +T+DQ+ S K + + ++S ++ S L+ D R++LP +N
Sbjct: 9 IKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEGSRQLVFDNAGRITLPAPKISKNKV 68
Query: 68 YVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDK----G 123
++G+FR K+ F FV + EE++ +F+ +++ N A++GD V EI KK +D+
Sbjct: 69 TLQGIFRAHKSGFGFVTID--EEEDDLFVSRDDVNFAIEGDRV--EIAIKKVADRLKGTA 124
Query: 124 AEGRVVKIIEHRKNTVVGIL---EKSKNFAFVIPTGS--FGKDIYIPNSKIANADNKDLV 178
AE V+ I+EH T VG++ E +A I + + + IYI S + +++
Sbjct: 125 AEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSKNQKIAQKIYIKKSPLV-LTGTEIL 183
Query: 179 AVEITFWGDDDRKPEGKIIK-ILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE 237
V+I + + R I+ ++G + + ++ + +F +E + + + +
Sbjct: 184 KVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEANRVPES 243
Query: 238 --EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETV 295
E D++ R +L + I TIDGADAKDLDDAV++++L+NGN +L V IADVS+YV + +
Sbjct: 244 PSEQDFAGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSA 303
Query: 296 LDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVY 355
LD EA RG SVY+ DRV+PM P+ +SNGICSLN ++LT S MEID KG VV + +
Sbjct: 304 LDQEAIKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDRKGKVVKHWIG 363
Query: 356 KSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFEL 415
++VIK+ RMTY DVN ++ G+++ +++Y I ++ M++L + L ++ RG+++F+
Sbjct: 364 QTVIKTNFRMTYSDVNDMIAGNQEKLDKYKTIVPSVELMVKLHETLETMRYKRGALNFDT 423
Query: 416 PELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPD 475
E K+I+++D V+ + L+ RG E++IE FM+ ANE VAE L+L IYR HE+P
Sbjct: 424 AEAKIIVNKDGLPVD-IQLRQRGIAERMIESFMLVANECVAEHFAKLDLPFIYRIHEEPK 482
Query: 476 REKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYT 534
+K+ + + FG + ++ Q+++ER KD+ + +++ +LR+++QARY+
Sbjct: 483 SDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQARYS 542
Query: 535 VEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK--EADLDEIAQHISK 592
+ H+GL + YTHFTSPIRRY DL+VHR++ N + + E + E+A+ S
Sbjct: 543 EHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVRDYGHNPAEKAEHFEQVIPELAKSSSS 602
Query: 593 TERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAIN 652
ER A++AE E +K E+MQ+ VG+ + +V+ + +F E +E IT
Sbjct: 603 LERRAIEAEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHITNLNE 662
Query: 653 YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
YY F E ++ S +VF +G + + L +AD +T EI
Sbjct: 663 YYQFHERTLTLQGEKSGRVFRVGQPIRIKLTRADKMTGEI 702
>gi|118579602|ref|YP_900852.1| ribonuclease R [Pelobacter propionicus DSM 2379]
gi|118502312|gb|ABK98794.1| ribonuclease R [Pelobacter propionicus DSM 2379]
Length = 777
Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats.
Identities = 224/664 (33%), Positives = 353/664 (53%), Gaps = 23/664 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G+L+ + + +L + ++G ++ + FV + E IFIP+ A+ GDT
Sbjct: 48 GELVRFRGNSYALASAATSIRGKLSSHRDGYGFVTPQGGGED--IFIPQRHMRGAMHGDT 105
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
V V + EGR+ ++E + VVG E+++ A VIP + I IP
Sbjct: 106 VEVHAERSRMGGGKFEGRITSVVERGVSRVVGRYEETRRGAIVIPEETRLNLVIAIPPKG 165
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + V VE++ + R EG ++++LG + + + + I R L F+ + +
Sbjct: 166 RGLAQDGQQVVVELSSYPVGGRPAEGNVVEVLGWPDDPEVEVQSAIRRFDLPHVFAPDTL 225
Query: 229 QQTKEIIKEEI---DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
+ E I E + + + R +L L+ +TIDG A+D DDAV + + E N++L V+IAD
Sbjct: 226 AEA-EAIPETVPAQELAGRVDLRPLATVTIDGETARDFDDAVSLRR-EGDNFRLWVSIAD 283
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VSHYV+ ++ LD +A RG SVY DR +PM P+ +SNGICSLN E+LT + EM D
Sbjct: 284 VSHYVRPDSPLDRDAYLRGTSVYFPDRCIPMLPERLSNGICSLNPGVERLTMTAEMLFDR 343
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVN-AILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
G ++ Y +I S R+TY V I+D D++ + + ML +M EL+ IL
Sbjct: 344 DGSMLESSFYPGIIASAARLTYTQVKRVIVDQDRETADSLGTVTPMLLEMKELALILMGM 403
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RGSIDF+LPE +VI+ E ++ +R ++IE+FM+AANE VA I +
Sbjct: 404 RRKRGSIDFDLPESEVIIGL-TGLTEGIVRAERTLAHQLIEEFMLAANEAVALFIAEKGI 462
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKT 523
+YR HE PD K++ E FGY+ P + ++P Q ++E + + +++
Sbjct: 463 PLLYRIHENPDPAKLINFQEFAFGFGYEFPLKEERVNPADLQRLLESAAGRPEERMINYA 522
Query: 524 ILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRV---LFSTIDNSIKPFKE 580
+LR +KQARY E++ HFGLAS Y HFTSPIRRY DL+VHR+ L + +N E
Sbjct: 523 LLRCMKQARYAAENLHHFGLASRCYCHFTSPIRRYPDLVVHRILKALLALAENRGSKQAE 582
Query: 581 A-------DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+L E+ +H SK ERVAM+AE + V +K ++MQ+ +GE + +TG
Sbjct: 583 KRLSLATHNLSEVGEHTSKRERVAMEAERDIVELKKAQFMQQHLGEEFDGFITGVTGFGF 642
Query: 634 FFETDE-HIECSWDITTA-INYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLE 691
F E +E +E ++T + Y F E + + + +V +GD+ V + T
Sbjct: 643 FVELEELFVEGLVHVSTLDDDLYTFVENRHSLVGRNRGRVLRIGDRARVRVASVSPATRR 702
Query: 692 IAVV 695
I V
Sbjct: 703 IEFV 706
>gi|58336785|ref|YP_193370.1| Ribonuclease R [Lactobacillus acidophilus NCFM]
gi|58254102|gb|AAV42339.1| Ribonuclease R [Lactobacillus acidophilus NCFM]
Length = 782
Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats.
Identities = 247/663 (37%), Positives = 377/663 (56%), Gaps = 34/663 (5%)
Query: 52 LIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVL 111
+I D K + L + + V+G+F+ F FV K D EE + +F+ + A+DGD V
Sbjct: 56 IITDGKGQYQLAKENTIVEGIFKANDKGFGFV-KLDDEEADDVFVAADYTKYAIDGDRVK 114
Query: 112 VEITEKKK--SDKGAEGRVVKIIEHRKNTVVGIL-----EKSKNFAFVIPTGSFGKDIYI 164
V+IT + KG EG+V +I+E +++VG E+ K F+ S K ++
Sbjct: 115 VKITAGGNPWNGKGPEGQVEEILERGIDSLVGEFHPLTDEQKKVSHFIGYALSNNKKLH- 173
Query: 165 PNSKIANADNK------DLVAVEITFWGDDDRKPE---GKIIKILGSSTNSKNMIDALIY 215
++ ++N D+V V I + ++D PE G +I I+G+ + I +++
Sbjct: 174 -KYRVYLSENGLIPQMGDMVKVSIKDYPEEDY-PESMTGAVINIIGNKNDPGVDIMSIVS 231
Query: 216 REGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLE 273
+ ++ +AM+Q I E D R ++T+ +TIDG D+KD DDAV V KL
Sbjct: 232 AHDVRTEWPEDAMKQANAIPDHVTEGDKKGRVDITDQPAVTIDGDDSKDFDDAVVVWKLP 291
Query: 274 NGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEE 333
NGNY L V IADVSHYV + T L+ EA RGNS YLVDRV+PM P +SNGICSLNE E
Sbjct: 292 NGNYHLGVHIADVSHYVTENTPLNDEAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVE 351
Query: 334 KLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKD-LINEYSDIYEMLK 392
+L SC+MEI +G V Y++Y SV++S RMTY VN L GD D L ++Y + ML+
Sbjct: 352 RLVLSCDMEITPEGKRVGYKIYPSVMRSHGRMTYNKVNQTLKGDMDGLEDKYVKLRPMLE 411
Query: 393 QMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAAN 452
M +L L ++ RG+IDFE PE K+++D D K ++L +RG EK+IE FM+ AN
Sbjct: 412 DMADLHTALYKQRHKRGAIDFEEPEAKIVVD-DQGKPTDIVLHERGTAEKMIESFMLMAN 470
Query: 453 ETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKI---PNFDNLHPKQFQEIIE 509
ETVAE Y ++ +YR HE PD E+I T E S FG + PN ++ P Q+++
Sbjct: 471 ETVAEDFYKKQVPFLYRVHETPDAERIKTFFEFCSAFGLNVHADPN--DIKPLDLQKVVS 528
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS 569
++ +V +LR+LKQARY+ + + HFGLA+ +YTHFTSPIRRYSDLMVHR++ +
Sbjct: 529 KTTGTPEEAVVQMMMLRSLKQARYSEDALGHFGLAAEYYTHFTSPIRRYSDLMVHRMIHA 588
Query: 570 ----TIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMV 625
+ + E+ L ++A+ S ER ++ E E +K+ EYM +VG+ + +V
Sbjct: 589 YQEKGMSEETQKHFESYLPDVAEQTSTQERRSIDTEREVNDLKMTEYMADQVGQHFDAVV 648
Query: 626 TGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKK 684
+F + +E I+ ++Y+F+E++ + + K + +G + V L
Sbjct: 649 ASVTSFGMFIQLPNTVEGLIHISNLTDDFYSFNEKSMTLTGRGTHKQYKVGMPIKVTLIN 708
Query: 685 ADL 687
A++
Sbjct: 709 ANV 711
>gi|154498393|ref|ZP_02036771.1| hypothetical protein BACCAP_02382 [Bacteroides capillosus ATCC
29799]
gi|150272461|gb|EDM99646.1| hypothetical protein BACCAP_02382 [Bacteroides capillosus ATCC
29799]
Length = 710
Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats.
Identities = 225/637 (35%), Positives = 340/637 (53%), Gaps = 25/637 (3%)
Query: 69 VKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGDTVLVEITEKKKSDKGAE-G 126
+ GVF+ F F+ ED + +E FIP A DGD V + ++G
Sbjct: 10 ITGVFQGTSRGFGFLVPEDGKSREDDYFIPPRATGGAWDGDKVQASPDPEIPWEEGRRTA 69
Query: 127 RVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNKDLVAVEITFWG 186
VV++ E V G +EK ++ P + K + +AVE+ +G
Sbjct: 70 TVVRVTERANRFVTGTVEKLGRELWMRPDSDKLPGPIKISGKAKGVRIGEKIAVEMLGYG 129
Query: 187 DDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFS----NEAMQQTKEIIKEEIDYS 242
P G + + G + N ++ A++Y + +F + A + +E+ K+ + +
Sbjct: 130 TAKTPPMGALRETFGPAGNRESSTAAILYHYEIDPEFPPAVLDAAARAPREVEKDAL--T 187
Query: 243 NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
R +L N IITIDGA +KDLDDAV +E+ E G + L V IADVSHYV++++ LDLEA
Sbjct: 188 GRTDLRNRIIITIDGASSKDLDDAVSLERDEQGRWVLGVHIADVSHYVQEKSPLDLEAWE 247
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RG SVY DRV+PM P E+SNGICSLN ++LT SC M + G ++ + KSVI+S
Sbjct: 248 RGTSVYFADRVIPMLPVELSNGICSLNPGVDRLTISCFMTLAADGREEDHTICKSVIRST 307
Query: 363 HRMTYKDVNAILDG-DKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RMTY+D N +L G D DL Y++I ML+ M L+++L ++ RGS+D E E +I
Sbjct: 308 ERMTYEDCNKLLAGEDPDLEKRYNNILPMLRDMAVLARVLEKRRKLRGSLDLETSESYII 367
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
DE V+ + ++ +GE E +IE FM+AANE VA ++ ++YR HEKP ++K
Sbjct: 368 CDEHGKPVD-IKVRKQGESEALIESFMLAANECVARHLFDRHKPAVYRVHEKPSQDKAEG 426
Query: 482 LNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHF 541
L +L+ FGY D+ Q+I+E +K K + ++ +LR+L +ARY V+++ HF
Sbjct: 427 LKTMLAPFGYTFQEADSF---ALQKILEDTKGKPEAPIISTMVLRSLMKARYDVQNLGHF 483
Query: 542 GLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK-------EADLDEI----AQHI 590
GLA+ +Y HFTSPIRRY DLMVHRVL + + P E + + A
Sbjct: 484 GLAAKYYCHFTSPIRRYPDLMVHRVLTQVLADEANPANVGKTMPWEKRMASVAARAADQS 543
Query: 591 SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITT- 649
S+ E A AE E ++ + EYM VGET+ V+G + +F +E
Sbjct: 544 SQREVAAQNAEREIEKLYMAEYMLAHVGETMVGTVSGVTKFGLFVMLPSGVEGLISAEAL 603
Query: 650 AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
++Y D++ +R + +VF G + VV AD
Sbjct: 604 PRDHYHHDDQRMTLRGEHTGRVFSFGMPLTVVCAAAD 640
>gi|125624388|ref|YP_001032871.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493196|emb|CAL98161.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
MG1363]
Length = 819
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 250/702 (35%), Positives = 396/702 (56%), Gaps = 33/702 (4%)
Query: 18 KYLTLDQITSFLEWSPKKKKDNKIII--LSWIDSGDLI-MDKKHRLSLPENSG---YVKG 71
K L++++++ L + K KD K+ + L+ +++ L+ K ++ L E + G
Sbjct: 17 KALSVEELSVALHMN--KAKDYKVFVKTLASLEAEHLLHFTAKGKVELAEQEEAKVVISG 74
Query: 72 VFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG--AEGRVV 129
+FR F FV D++E + +FI + + ALDGD V +EI + S KG AEG VV
Sbjct: 75 IFRANAAGFGFVSI-DADEPD-VFIGRGQTGFALDGDEVFIEIDKNANSLKGTAAEGHVV 132
Query: 130 KIIEHRKNTVVGIL-----EKSKNFAFVIPTGSFGKDI----YIPNSKIANADNKDLVAV 180
+II H + VVG E+ + + S K I Y+ + + +NK +V V
Sbjct: 133 EIIRHELHQVVGTFVALNDEEKEQTGLIGFVKSRNKKIPYRVYLGDEGL-KPENKAIVRV 191
Query: 181 EITFWGDDD--RKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE- 237
EIT D + + +G + +I+G + + + ++ + +F E ++Q + +E
Sbjct: 192 EITHHPDKEFPQTMQGLVTEIIGQANDQGIDVLEVLASMDIVSEFPKEVLEQADSVPEEV 251
Query: 238 -EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVL 296
E + + R + N TIDGADAKDLDDAV+ ++L NGNY+L V IADVSHYV + + L
Sbjct: 252 PESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPL 311
Query: 297 DLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYK 356
D EA RG SVY+ DRV+PM P+ +SNGICSLN + +LT SC MEI +G VVNY++ +
Sbjct: 312 DKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRLNRLTQSCVMEISPEGRVVNYQISQ 371
Query: 357 SVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELP 416
S+IK+ RMTY VN ++ GDKD + +Y+ I + +K M+E+ IL + RG+IDF+
Sbjct: 372 SIIKTTERMTYDAVNQMIAGDKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDTV 431
Query: 417 ELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDR 476
E K+I++E +E + + RG E++IE FM+ ANETVA L IYR HE+P
Sbjct: 432 EAKIIVNEKGLPIE-IRKRSRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHEQPKA 490
Query: 477 EKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTV 535
+++ + + FG +I N + K Q +++ K + M++ +LR+++QARY+
Sbjct: 491 DRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQARYSE 550
Query: 536 EDISHFGLASSHYTHFTSPIRRYSDLMVHRVL----FSTIDNSIKPFKEADLDEIAQHIS 591
+ HFGLA+ +YTHFTSPIRRY DL+VHR++ I ++ E + EIA+H S
Sbjct: 551 NNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIPANLLQKWEEKIPEIAEHSS 610
Query: 592 KTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTAI 651
ER A+ AE E ++K E+M++ V E ++ + +F E + IE I+T
Sbjct: 611 HRERRAVDAEREVEKMKKAEFMEEHVDEEFEGIIASVTRFGMFIELENTIEGLVHISTLK 670
Query: 652 -NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+Y+ + E + + F +G + + + KAD +T EI
Sbjct: 671 GDYFTYHERMLALIGERTGLTFKIGQPIKIKVVKADKMTGEI 712
>gi|15672924|ref|NP_267098.1| ribonuclease [Lactococcus lactis subsp. lactis Il1403]
gi|18202798|sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 (RNase R 1) (VacB protein homolog 1)
gi|12723878|gb|AAK05040.1|AE006328_8 ribonuclease [Lactococcus lactis subsp. lactis Il1403]
Length = 817
Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats.
Identities = 240/646 (37%), Positives = 365/646 (56%), Gaps = 27/646 (4%)
Query: 69 VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG--AEG 126
+ G+FR F FV D+EE + +F+ + + ALDGD V +EI + + KG AEG
Sbjct: 72 ISGIFRANAAGFGFVSI-DAEEPD-VFVARGQTAFALDGDEVFIEIDKNANALKGTSAEG 129
Query: 127 RVVKIIEHRKNTVVGIL--------EKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDL 177
VV+II H + VVG E++ FV +Y+ N + +NK +
Sbjct: 130 HVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKSRNKKIPYRVYLENEGLI-PENKAI 188
Query: 178 VAVEITFWGDDD--RKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEII 235
V VEIT + D + + +G + +I+G + + + ++ + +F E + Q + +
Sbjct: 189 VRVEITHYPDKEFPQTMQGLVTEIIGQADDQGIDVLEVLASMDIVSEFPKEVLDQAEAVP 248
Query: 236 KE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKE 293
+E E + R + N TIDGADAKDLDDAV+ ++LENGNY+L V IADVSHYV +
Sbjct: 249 EEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTEN 308
Query: 294 TVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYE 353
+ LD EA RG SVY+ DRV+PM P+ +SNGICSLN + +LT SC MEI +G V+NY+
Sbjct: 309 SPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISPEGRVINYQ 368
Query: 354 VYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDF 413
+ +S+IK+ RMTY VN ++ GD+ + Y+ I + +K M+EL IL + RG+IDF
Sbjct: 369 ISQSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDF 428
Query: 414 ELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEK 473
+ E K+I++E +E + + RG E++IE FM+ ANETVA L IYR HE+
Sbjct: 429 DTVEAKIIVNEKGLPIE-IRKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHEQ 487
Query: 474 PDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQAR 532
P +++ + + FG +I N + K Q +++ K + M++ +LR+++QAR
Sbjct: 488 PKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQAR 547
Query: 533 YTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK-----EADLDEIA 587
Y+ + HFGLA+ +YTHFTSPIRRY DL+VHR L I P E + EIA
Sbjct: 548 YSENNEGHFGLAAENYTHFTSPIRRYPDLLVHR-LIREIGEGKTPANILQKWEDKIPEIA 606
Query: 588 QHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDI 647
+H S ER A+ AE E ++K E+M++ VGE ++ + +F E + IE I
Sbjct: 607 EHSSHRERRAVDAEREVEKMKKAEFMEEHVGEEYEGIIASVTRFGMFIELENTIEGLVHI 666
Query: 648 TTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+T +Y+ + E + S F +G + + + KAD +T EI
Sbjct: 667 STLKGDYFNYQERMLALIGERSGLTFKIGQPIKIKVVKADRMTGEI 712
>gi|116511759|ref|YP_808975.1| Exoribonuclease R [Lactococcus lactis subsp. cremoris SK11]
gi|116107413|gb|ABJ72553.1| Exoribonuclease R [Lactococcus lactis subsp. cremoris SK11]
Length = 810
Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats.
Identities = 237/645 (36%), Positives = 368/645 (57%), Gaps = 25/645 (3%)
Query: 69 VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG--AEG 126
+ G+FR F FV D++E + +FI + + ALDGD V +EI + S KG AEG
Sbjct: 65 ISGIFRANAAGFGFVSI-DADEPD-VFIGRGQTGFALDGDEVFIEIDKNANSLKGTAAEG 122
Query: 127 RVVKIIEHRKNTVVGIL-----EKSKNFAFVIPTGSFGKDI----YIPNSKIANADNKDL 177
VV+II H + VVG E+ + + S K I Y+ + + +NK +
Sbjct: 123 HVVEIIRHELHQVVGTFVALNDEEKEQTGLIGFVKSRNKKIPYRVYLGDEGL-KPENKAI 181
Query: 178 VAVEITFWGDDD--RKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEII 235
V VEIT + D + + +G + +I+G + + + ++ + +F E + Q +
Sbjct: 182 VRVEITHYPDKEFPQTMQGLVTEIIGQANDQGIDVLEVLASMDIVSEFPKEVLDQADSVP 241
Query: 236 KE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKE 293
+E E + + R + N TIDGADAKDLDDAV+ ++L NGNY+L V IADVSHYV +
Sbjct: 242 EEVPESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTEN 301
Query: 294 TVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYE 353
+ LD EA RG SVY+ DRV+PM P+ +SNGICSLN + +LT SC MEI +G VVNY+
Sbjct: 302 SPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRLNRLTQSCVMEISPEGRVVNYQ 361
Query: 354 VYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDF 413
+ +S+IK+ RMTY VN ++ G KD + +Y+ I + +K M+E+ IL + RG+IDF
Sbjct: 362 ISQSIIKTTERMTYDAVNQMIAGAKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDF 421
Query: 414 ELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEK 473
+ E K+I++E +E + + RG E++IE FM+ ANETVA L IYR HE+
Sbjct: 422 DTVEAKIIVNEKGLPIE-IRKRSRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHEQ 480
Query: 474 PDREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQAR 532
P +++ + + FG +I N + K Q ++++K + M++ +LR+++QAR
Sbjct: 481 PKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKNKGQPGEMVLSTMLLRSMQQAR 540
Query: 533 YTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL----FSTIDNSIKPFKEADLDEIAQ 588
Y+ + HFGLA+ +YTHFTSPIRRY DL+VHR++ I ++ E + EIA+
Sbjct: 541 YSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIPANLLQKWEEKIPEIAE 600
Query: 589 HISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDIT 648
H S ER A+ AE E ++K E+M++ V E ++ + +F E + IE I+
Sbjct: 601 HSSHRERRAVDAEREVEKMKKAEFMEEHVDEEFEGIIASVTRFGMFIELENTIEGLVHIS 660
Query: 649 TAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
T +Y+ + E + + F +G + + + KAD +T EI
Sbjct: 661 TLKGDYFTYHERMLALIGERTGLTFKIGQPIKIKVVKADKMTGEI 705
>gi|156859113|gb|EDO52544.1| hypothetical protein BACUNI_04161 [Bacteroides uniformis ATCC 8492]
Length = 714
Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats.
Identities = 227/661 (34%), Positives = 375/661 (56%), Gaps = 29/661 (4%)
Query: 43 ILSWIDSGDLIMD-KKHRLSLPENSGYVKGVFRIIKN-KFAFVDKEDSEEKEGIFIPKEE 100
ILS + D I + KH+ L + + G F+ N K +F+ + E IF+ +
Sbjct: 57 ILSELSMDDYITEVDKHKYKLNNHGVEMTGTFQRKSNGKNSFIPEGGGEP---IFVAERN 113
Query: 101 FNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFG 159
+A++ D V + K++ + AEG V++I+E +T VG LE +K++AF++ +
Sbjct: 114 SAHAMNNDKVRIAFYAKRRG-REAEGEVIEILERANDTFVGTLEVAKSYAFLVTENRTLA 172
Query: 160 KDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGL 219
DI+IP K+ D V++ W D + P G++I ILG + ++ + A++ GL
Sbjct: 173 NDIFIPKEKLKGGKTGDKAIVKVVEWPDKAKNPIGQVIDILGRAGDNTTEMHAILAEFGL 232
Query: 220 SEKFSNEAMQQTKEIIKEEI---DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGN 276
+ A+++ + I EI + + R++ ++ TID DAKD DDA+ + KL+ G
Sbjct: 233 PYVYP-AAVEKAADKIPAEISAEEIARREDFRGVTTFTIDPKDAKDFDDALSIRKLKGGL 291
Query: 277 YKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLT 336
+++ V IADV+HYVK+ ++D EA R SVYLVDR +PM P+ + N ICSL EEKL
Sbjct: 292 WEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLA 351
Query: 337 FSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLE 396
+S E+ KG+V N V +VIKS R TY++ I++ K D E + Q+ +
Sbjct: 352 YSVIFEMTEKGEVKNSRVVHTVIKSDRRFTYEEAQEIIETGK------GDFQEEVLQLDK 405
Query: 397 LSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVA 456
L+KILR +F G+I+F+ E+K +DE V V K+ + K+IE+FM+ AN TVA
Sbjct: 406 LAKILRENRFKAGAINFDRYEVKFEIDEKGKPVS-VYFKESKDANKLIEEFMLLANRTVA 464
Query: 457 ERIYWLELASI-----YRTHEKPDREKIVTLNEILSKFGYKIPNFDNLH--PKQFQEIIE 509
E+I + YR H+ PD EK+ L + +++FGYK+ K +++
Sbjct: 465 EKIGRVPKGKKAKVLPYRIHDLPDPEKLDNLAQFIARFGYKLRTSGTKTDISKSINHLLD 524
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS 569
+ K+ L+ +RA+++ARY+V ++ H+GLA +YTHFTSPIRRY D+MVHR+L
Sbjct: 525 DIQGKKEENLIETVSIRAMQKARYSVHNVGHYGLAFDYYTHFTSPIRRYPDMMVHRLLTK 584
Query: 570 TIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFA 629
+D + E + + +H S E++A AE S++ K VE+M +R+G+T + +++G
Sbjct: 585 YLDQGGRTVSEQKYEALCEHSSSMEQIASNAERASIKYKQVEFMTERLGQTFDGVISGVT 644
Query: 630 QKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
+ ++ E +E+ +C I +YY FDE+NYC+R +K++ LGD + + + +A+
Sbjct: 645 EWGLYVELNEN-KCEGMIPIRDLDDDYYEFDEKNYCLRGRRKNKIYSLGDAITIKVARAN 703
Query: 687 L 687
L
Sbjct: 704 L 704
>gi|125718408|ref|YP_001035541.1| Exoribonuclease, VacB/Rnb family, putative [Streptococcus sanguinis
SK36]
gi|125498325|gb|ABN44991.1| Exoribonuclease, VacB/Rnb family, putative [Streptococcus sanguinis
SK36]
Length = 782
Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats.
Identities = 245/706 (34%), Positives = 399/706 (56%), Gaps = 33/706 (4%)
Query: 10 IKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLI-MDKKHRLSLPENSGY 68
I E+L D + +++D++ + L K + + +S ++ I D K R+ L E
Sbjct: 5 ILEILNDKESISVDELAAALGKESSKDFSSLVKTISQMERKHQIRFDDKGRIELYEKKKQ 64
Query: 69 ----VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG- 123
+KGVF KN F FV +EE++ +F+ + + N+A+DGDTV V IT+ KG
Sbjct: 65 ERLTLKGVFHAHKNGFGFVTL--NEEEDDLFVGRNDVNHAIDGDTVEVVITKVADRIKGT 122
Query: 124 -AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDL 177
AE +++ I+EH + VG L EK K ++ + IY+ + D ++
Sbjct: 123 SAEAKIIDILEHSLTSAVGQLVLDEEKPKYAGYIRSKNQKISQPIYVKKPAMV-LDGTEV 181
Query: 178 VAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQ 230
+ V I D+ P K ++ ++G + + ++ + +F + +++
Sbjct: 182 LKVAI------DKYPTKKHDFFVASLVDVVGHVNDPGIDVLEVLESMDIVSEFPEKVLEE 235
Query: 231 TKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSH 288
+ + + E D + R +L TIDGADAKDLDDAV++++L+NGN++L V IADVS+
Sbjct: 236 AERVPEAPTESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSY 295
Query: 289 YVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGD 348
YVK+ + LD +A +R SVY+ DRV+PM P+ +SNGICSLN ++LT S MEID KG
Sbjct: 296 YVKEGSELDKDALNRATSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDAKGR 355
Query: 349 VVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTR 408
VV + ++VIK+ RMTY DVN I+ G+++ ++ I + M++L +IL +F R
Sbjct: 356 VVKNTITQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKR 415
Query: 409 GSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIY 468
G+++F+ E K++++++ V+ ++L+ RG E++IE FM+ ANETVAE L L IY
Sbjct: 416 GALNFDTNEAKIMVNKEGRPVD-IVLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIY 474
Query: 469 RTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQ-FQEIIERSKDKETSMLVHKTILRA 527
R HE+P EK+ + S FG +I N +Q Q+I+E KD+ ++ +LR+
Sbjct: 475 RIHEEPKAEKVQKFIDYASSFGIRIYGTANSMSQQALQDIMEAVKDQPYEDVLSMMLLRS 534
Query: 528 LKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPFKEADLDEI 586
++QARY+ + H+GLA+ YTHFTSPIRRY DL+VHR++ + I E + EI
Sbjct: 535 MQQARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVRDYSKSKEIAEHFEQVIPEI 594
Query: 587 AQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWD 646
A S ER A++AE E +K EYM++ VGE + +V+ + +F E +E
Sbjct: 595 ASQSSSRERRAIEAEREVEAMKKAEYMEEFVGEEFDGVVSSVVKFGLFVELPNTVEGLIH 654
Query: 647 ITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+T +Y+++E ++ S VF +G ++ + L +AD T EI
Sbjct: 655 VTNLPEFYSYNERTMTLQGEKSGVVFKVGQQIRIKLVRADKATGEI 700
>gi|116494482|ref|YP_806216.1| Exoribonuclease R [Lactobacillus casei ATCC 334]
gi|116104632|gb|ABJ69774.1| Exoribonuclease R [Lactobacillus casei ATCC 334]
Length = 789
Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats.
Identities = 233/644 (36%), Positives = 361/644 (56%), Gaps = 30/644 (4%)
Query: 69 VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSD--KGAEG 126
+ G+F + F FV ED + +++P + ALDGDTV V I + + + +G EG
Sbjct: 73 LTGIFHGNEKGFGFVAIEDQDND--VYVPSTSTDFALDGDTVEVRIVREARPNDTRGPEG 130
Query: 127 RVVKIIEHRKNTVVGILE--------KSKNFAFVIPTGSFGKD--IYIPNSKIANADNKD 176
+ K++E T+VG + KS V+ K+ +Y+ ++ D
Sbjct: 131 EITKVVERSLTTLVGEFKPFSDKDRAKSGFIGMVVSHEKKLKNFPVYVKDTGTM-PQLGD 189
Query: 177 LVAVEITFWGDDDRKPE---GKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKE 233
+ EIT + ++ P+ G +++ LG+ + I +L+ + + +F +E M QT +
Sbjct: 190 MTVTEITEF-PNEHHPKLMYGMVVETLGNKNDPGVDIMSLVMQNHIKTEFPDEVMTQTND 248
Query: 234 IIKEEI--DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVK 291
I + NRK++T+ +++TIDG D+KD DDAV V KL NGN+ L V IADVSHYV
Sbjct: 249 IPDHVTPEERVNRKDITDQAVVTIDGDDSKDFDDAVVVWKLPNGNFHLGVHIADVSHYVT 308
Query: 292 KETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVN 351
+ + LD EA RG S YLVDRV+PM P +SNGICSLN ++L SC+MEID G VVN
Sbjct: 309 EGSALDKEAFDRGTSTYLVDRVIPMLPFRLSNGICSLNPGVDRLAMSCDMEIDQDGHVVN 368
Query: 352 YEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGS 410
+E+Y+S+IKS RMTY +VN I+ D D +++ EY ++ M + M++L +IL + RG+
Sbjct: 369 HEIYQSIIKSHARMTYNNVNKIVTDHDPEVMAEYQELVPMFEDMVQLHQILYKMRHARGA 428
Query: 411 IDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRT 470
IDFE E K+I+D+ + + ++L++RG E++IE FM+AANETVAE L +YR
Sbjct: 429 IDFEENEAKIIVDDMGHPTD-IVLRERGVSERMIESFMLAANETVAEHYNKQHLPFLYRV 487
Query: 471 HEKPDREKIVTLNEILSKFGYKIP--NFDNLHPKQFQEIIERSKDKETSMLVHKTILRAL 528
HE PD ++I E ++ FG +P + PKQ Q+++ +V +LR+L
Sbjct: 488 HETPDADRIKEFMEFIASFGITVPMKKGKEITPKQLQDVVTDVTGTPEEAMVSVKMLRSL 547
Query: 529 KQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL----FSTIDNSIKPFKEADLD 584
KQARY+ + + HFGLA+ +Y HFTSPIRRY DL+ HR++ + IK L
Sbjct: 548 KQARYSPDPLGHFGLAAKYYCHFTSPIRRYPDLVAHRLIRDYAVEGTGDDIKASWNKKLP 607
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECS 644
+IA S ER ++ AE +K E+M +VGE + +V+G +F +E
Sbjct: 608 DIAAQASMAERRSIDAERAVDDLKKAEFMADKVGEEFDAVVSGVTSFGMFVALPNTVEGL 667
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
IT +YY+F + + + + + +G + V L D+
Sbjct: 668 VHITRMTDDYYSFIDSQMALVGERTKRTYRIGQSLRVKLDNVDI 711
>gi|116629932|ref|YP_815104.1| Exoribonuclease R [Lactobacillus gasseri ATCC 33323]
gi|116095514|gb|ABJ60666.1| Exoribonuclease R [Lactobacillus gasseri ATCC 33323]
Length = 779
Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats.
Identities = 246/668 (36%), Positives = 378/668 (56%), Gaps = 37/668 (5%)
Query: 49 SGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGD 108
S ++ D + + L + + +G F+ F FV K D E E FI K A+DGD
Sbjct: 53 SKKIVTDGQGKYQLNQLNTVAEGTFKANDKGFGFV-KFDDESMEDAFIDKHNTKFAIDGD 111
Query: 109 TVLVEITEKKK--SDKGAEGRVVKIIEHRKNTVV--------GILEKSKNFAFVIPTGSF 158
V V+I + +G EG++ +I E T+V +++ S + +V+
Sbjct: 112 HVKVKIIAGANPWNGRGPEGKIEEITERGVETLVVEFRPYADEVVKSSGFYGYVV----- 166
Query: 159 GKDIYIPNSKIANADNK------DLVAVEITFWGDDDRKPEGKIIKIL--GSSTNSKNMI 210
++ + KI DN D+V + IT + D+D+ E + + +L G+ + I
Sbjct: 167 SENRKLKKYKINITDNGVKPQMGDMVKISITKYPDEDQPDEMQGVALLTIGNKNDPGVDI 226
Query: 211 DALIYREGLSEKFSNEAMQQTKEI---IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAV 267
+++ + + +AM Q I + EE + + R ++T+ +TIDG D+KD DDAV
Sbjct: 227 MSIVVDNDIRTDWPEDAMDQANNIPDHVTEE-EKAKRVDITDQPAVTIDGDDSKDFDDAV 285
Query: 268 YVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICS 327
V KL NGNY L V IADVSHYVK+ + LD EA RGNS YLVDRV+PM P +SNGICS
Sbjct: 286 VVWKLPNGNYHLGVHIADVSHYVKEGSPLDKEAFARGNSTYLVDRVIPMLPFRLSNGICS 345
Query: 328 LNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGD--KDLINEYS 385
LNE E+L SC+MEI +G V Y +Y SV+KS R+TY +VN +LD + + L +Y
Sbjct: 346 LNEGVERLVLSCDMEITPEGKRVGYRIYPSVMKSHGRLTYNNVNKVLDPNNHEKLEQKYE 405
Query: 386 DIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIE 445
D+ ML M +L IL ++ RG+IDFE PE K+I+D D K ++L +RG EK+IE
Sbjct: 406 DVAPMLHDMADLHNILYKQRHQRGAIDFEEPEAKIIVD-DKGKPIDIVLHERGTAEKMIE 464
Query: 446 DFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQF 504
FM+ ANETVAE Y + +YR HE PD+EK+ + E +S FG + + +++ PK
Sbjct: 465 SFMLMANETVAEDYYKKHVPFLYRVHETPDQEKMQSFFEFVSAFGLNVKADPNDVKPKDL 524
Query: 505 QEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVH 564
Q+++ +++ +V +LR+LKQA Y+ E + HFGLA+ +YTHFTSPIRRYSDLMVH
Sbjct: 525 QKVVAKTEGTPEEAVVQMMMLRSLKQAHYSPEPLGHFGLAAKYYTHFTSPIRRYSDLMVH 584
Query: 565 RVLFS----TIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGET 620
R++ +D ++ ++ L ++A+ S ER ++ E +K+ E+M +VG+T
Sbjct: 585 RMIHEYADKKMDKDVQKHFKSQLPDVAEQTSTQERKSIDTERGVNDLKMTEFMADKVGQT 644
Query: 621 LNVMVTGFAQKKIFFETDEHIECSWDITTA-INYYAFDEENYCMRDTDSDKVFYLGDKVD 679
+ +V+ +F + +E I+ +YY FDE++ + +S K F +G +
Sbjct: 645 FDAIVSSVTSFGMFIQLPNTVEGLIHISNLNDDYYNFDEKSLTLTGRNSHKQFKIGMPIK 704
Query: 680 VVLKKADL 687
V L AD+
Sbjct: 705 VKLINADV 712
>gi|119897230|ref|YP_932443.1| exoribonuclease II [Azoarcus sp. BH72]
gi|119669643|emb|CAL93556.1| exoribonuclease II [Azoarcus sp. BH72]
Length = 993
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 216/650 (33%), Positives = 359/650 (55%), Gaps = 16/650 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ +++ LP+ + ++G + F F+ ++D + IF+ +E L GD
Sbjct: 54 GQLMRNRRDAFLLPDKADLIRGRVEGHPDGFGFLVRDDGQPD--IFLGPKEMREVLHGDR 111
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYI-PNS 167
+V I + + + EG+VV+I+E + VVG + V+P +DI + P
Sbjct: 112 AIVRIAGQDRRGR-PEGKVVEILERANSRVVGRVLNEHGVMIVVPENRRLAQDILVAPGG 170
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
K +V VE+ +P G++ ++LG+ + I+ + + L +FS+EA
Sbjct: 171 K--KVQPGQVVTVELIEQPTKYAQPIGRVTEVLGNYADPGMEIEIALRKHDLPFEFSSEA 228
Query: 228 MQQTKEIIK--EEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
T+++ + D++ R+++T L ++TIDG AKD DDAVY E+ G ++L+VAIAD
Sbjct: 229 KADTRKLPTAVRKKDWAGREDITALPLVTIDGETAKDFDDAVYCERQGRG-FRLVVAIAD 287
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VSHYV+ + LD +A RGNSVY RV+PM P+++SNG+CSLN + E+L +M I +
Sbjct: 288 VSHYVEAGSALDRDAYERGNSVYFPRRVIPMLPEKLSNGLCSLNPQVERLCMVADMGISM 347
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIK 404
G++ Y Y +V+ S R+TY V A L D D ++E + L+ + +L ++L
Sbjct: 348 TGEIKAYRFYPAVMFSHARLTYTKVAAALYDNDATALDEIGGLLPHLENLDKLFRVLLKA 407
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E ++I D DN K+E+++ + R + ++IE+ M+AAN ++ ++ +
Sbjct: 408 RAKRGAIDFETTETRMIFD-DNGKIERIVPETRNDAHRLIEECMLAANVCASDFLHKNDH 466
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR HE P EK+ L LS+FG + D K + ++++ KD+ + L+ +
Sbjct: 467 PALYRVHEGPTPEKLEKLRTFLSEFGLPLGGGDEPRAKDYAALLDKVKDRPDAQLLQTVM 526
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLD 584
LR+L+QA Y+ +++ HFGLA YTHFTSPIRRY DL+VHR + + + + + D D
Sbjct: 527 LRSLRQAVYSPDNVGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLAG--EHYAAGDWD 584
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIEC 643
+I H S TER A +A + V YMQ +VGE V+ +F D IE
Sbjct: 585 DIGLHCSTTERRADEATRDVVAWLKCYYMQDKVGEEFEGSVSAVVPFGLFVALDGIFIEG 644
Query: 644 SWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
++ +Y+ +DE + M + K F L D+V V L + D+ T +I
Sbjct: 645 LLHVSELGADYFHYDEARHAMLGERTGKQFRLSDRVRVQLVRVDMETNKI 694
>gi|157074861|gb|ABV09544.1| ribonuclease R [Streptococcus gordonii str. Challis substr. CH1]
Length = 782
Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats.
Identities = 245/707 (34%), Positives = 395/707 (55%), Gaps = 33/707 (4%)
Query: 9 KIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLI-MDKKHRLSLPENSG 67
+I + L+ + ++D++ + L K + + +S ++ I D K R+ L E
Sbjct: 4 EIIQYLETRQQASVDELAAALGKESSKDFSDLVKTISQMERKRQIRFDDKGRIELYEKKK 63
Query: 68 Y----VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG 123
+KGVF KN F FV +EE++ +F+ + + N+A+DGDTV V IT+ KG
Sbjct: 64 QERLTLKGVFHAHKNGFGFVTL--NEEEDDLFVGRNDVNHAIDGDTVEVVITKVADRIKG 121
Query: 124 --AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKD 176
AE +++ I+EH + VG L EK K ++ + IY+ + D +
Sbjct: 122 TSAEAKIIDILEHSLTSAVGQLVLDEEKPKYAGYIRSKNQKISQPIYVKKPAMV-LDGTE 180
Query: 177 LVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQ 229
++ V I D+ P K ++ ++G + + ++ + F + ++
Sbjct: 181 VLKVAI------DKYPTKKHDFFVASLVDVVGHVNDPGIDVLEVLESMDIVSVFPEKVLE 234
Query: 230 QTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVS 287
+ + + E D R +L TIDGADAKDLDDAV++++L+NGN++L V IADVS
Sbjct: 235 EAERVPDAPTESDLKGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVS 294
Query: 288 HYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKG 347
+YVK+ + LD EA +R SVY+ DRV+PM P+ +SNGICSLN ++LT S MEID KG
Sbjct: 295 YYVKEGSELDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDAKG 354
Query: 348 DVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFT 407
VV + + ++VIK+ RMTY DVN I+ GD++ ++ I + M++L KIL +F
Sbjct: 355 RVVKHTITQTVIKTTFRMTYSDVNDIIAGDEEKAGQFKAIVPSIDSMVQLHKILESMRFK 414
Query: 408 RGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASI 467
RG+++F+ E K++++++ V+ ++L+ RG E++IE FM+ ANETVAE L L I
Sbjct: 415 RGALNFDTNEAKIMVNKEGRPVD-IVLRQRGIAERMIESFMLVANETVAEHFAKLNLPFI 473
Query: 468 YRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILR 526
YR HE+P EK+ + S FG +I ++ + QEI+E KD+ ++ +LR
Sbjct: 474 YRIHEEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQEIMEAVKDQPYEDVLSMMLLR 533
Query: 527 ALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPFKEADLDE 585
+++QARY+ + H+GLA+ YTHFTSPIRRY DL+VHR++ I E + E
Sbjct: 534 SMQQARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMVRDYGQSKEIAEHFEQVIPE 593
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSW 645
IA S ER A++AE E +K EYM++ VGE + +V+ + +F E +E
Sbjct: 594 IASQSSSRERRAIEAEREVEAMKKAEYMEEFVGEEFDGVVSSVVKFGLFVELPNTVEGLI 653
Query: 646 DITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+T +Y+++E ++ S VF +G ++ + L +AD T EI
Sbjct: 654 HVTNLPEFYSYNERTMTLQGEKSGVVFKVGQQIRIKLVRADKATGEI 700
>gi|154706980|ref|YP_001424555.1| ribonuclease R [Coxiella burnetii Dugway 7E9-12]
gi|154356266|gb|ABS77728.1| ribonuclease R [Coxiella burnetii Dugway 7E9-12]
Length = 736
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 227/649 (34%), Positives = 354/649 (54%), Gaps = 23/649 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G +I +++ +L + ++G + ++ F F+ +D IF+P E D
Sbjct: 71 GQVISNRRGSYALVKELELIRGRVQAHRDGFGFLIPDDGSVD--IFLPAREMRMVFTDDI 128
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSF-GKDIYIPNSK 168
VLV IT K ++ EG +V+I+E + VVG + AFV P +DI IP +
Sbjct: 129 VLVRITNPK--ERRPEGAIVEILERNTHQVVGRYFEEGGIAFVDPNHKLITQDILIPPGQ 186
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A V EIT R+ G+II+ILG ++ I L ++ NE +
Sbjct: 187 QGEAKTGQFVVAEITVQPTKRRQAMGRIIEILGDQLTPGMEVELAIRTHELPYRWPNEVL 246
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ K++ E E D RK+L L +TIDG DA+D DDAVY E +G +KL VAIADV
Sbjct: 247 REAKKLPVELMEYDKKGRKDLRKLPFMTIDGEDARDFDDAVYCESKSSG-WKLYVAIADV 305
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV +E+ LD E + RGNSVY +V+PM P+ +SN +CSL +++L CE+ + K
Sbjct: 306 SHYVSRESALDKEGQLRGNSVYFPSKVIPMLPEALSNNLCSLVPNKDRLAIVCEIHLTAK 365
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKF 406
G V Y+ Y++VI S R+TY V A+L G+K + ++ +K + +L + L ++
Sbjct: 366 GKVSKYQFYEAVIHSHARLTYTQVAAMLRGEK---TKNEEMLPHIKNLDQLYQNLLRQRI 422
Query: 407 TRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS 466
RG+I+FE E ++ D+ K+++++ R E +IIE+ M+ AN + + + + +
Sbjct: 423 NRGAIEFETTETRIQFDQ-KGKIKRIVPVVRNEAHRIIEECMLVANVSASHFLQEKNVPT 481
Query: 467 IYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILR 526
+YR HE PD +K+ L + L FG ++ D P + +++ R + + + L+ +LR
Sbjct: 482 LYRVHEGPDEQKLHDLKQFLRAFGLRLTGGDKPTPMDYAKLLLRIEKRPDAHLLQTVMLR 541
Query: 527 ALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTID-NSIKPF--KEADL 583
+L+QA YT ED HFGL+ Y HFTSPIRRY DL+VHR + + S K F L
Sbjct: 542 SLRQAIYTPEDGGHFGLSYERYCHFTSPIRRYPDLLVHRGIRHALQKKSPKKFHYDNPKL 601
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN---VMVTGFAQKKIFFETDE- 639
E+ +H S TER A +A E+V EYM ++G+ V VTGF +F + D+
Sbjct: 602 GELGEHCSMTERRADRATREAVDWLKCEYMMNKIGQAYAGHIVDVTGFG---VFVQLDQI 658
Query: 640 HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+IE IT N YY FD ++ +R S +V+ LGD + V++ + DL
Sbjct: 659 YIEGLVHITALENDYYHFDPVHHLLRGKRSGRVYRLGDTIRVIVARVDL 707
>gi|29654398|ref|NP_820090.1| ribonuclease R [Coxiella burnetii RSA 493]
gi|29541665|gb|AAO90604.1| ribonuclease R [Coxiella burnetii RSA 493]
Length = 736
Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats.
Identities = 227/649 (34%), Positives = 354/649 (54%), Gaps = 23/649 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G +I +++ +L + ++G + ++ F F+ +D IF+P E D
Sbjct: 71 GQVISNRRGSYALVKELELIRGRVQAHRDGFGFLIPDDGSVD--IFLPAREMRMVFTDDI 128
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSF-GKDIYIPNSK 168
VLV IT K ++ EG +V+I+E + VVG + AFV P +DI IP +
Sbjct: 129 VLVRITNPK--ERRPEGAIVEILERNTHQVVGRYFEEGGIAFVDPNHKLITQDILIPPGQ 186
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A V EIT R+ G+II+ILG ++ I L ++ NE +
Sbjct: 187 QGEAKTGQFVVAEITVQPTKRRQAMGRIIEILGDQLTPGMEVELAIRTHELPYRWPNEVL 246
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ K++ E E D RK+L L +TIDG DA+D DDAVY E +G +KL VAIADV
Sbjct: 247 REAKKLPVELMEYDKKGRKDLRKLPFMTIDGEDARDFDDAVYCESKSSG-WKLYVAIADV 305
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV +E+ LD E + RGNSVY +V+PM P+ +SN +CSL +++L CE+ + K
Sbjct: 306 SHYVSRESALDKEGQLRGNSVYFPSKVIPMLPEALSNNLCSLVPNKDRLAIVCEIHLTAK 365
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKF 406
G V Y+ Y++VI S R+TY V A+L G+K + ++ +K + +L + L ++
Sbjct: 366 GKVSKYQFYEAVIHSHARLTYTQVAAMLRGEK---TKNEEMLPHIKNLDQLYQNLLRQRI 422
Query: 407 TRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS 466
RG+I+FE E ++ D+ K+++++ R E +IIE+ M+ AN + + + + +
Sbjct: 423 NRGAIEFETTETRIQFDQ-KGKIKRIVPVVRNEAHRIIEECMLVANVSASHFLQEKNIPT 481
Query: 467 IYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILR 526
+YR HE PD +K+ L + L FG ++ D P + +++ R + + + L+ +LR
Sbjct: 482 LYRVHEGPDEQKLHDLKQFLRAFGLRLTGGDKPTPMDYAKLLLRIEKRPDAHLLQTVMLR 541
Query: 527 ALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTID-NSIKPF--KEADL 583
+L+QA YT ED HFGL+ Y HFTSPIRRY DL+VHR + + S K F L
Sbjct: 542 SLRQAIYTPEDGGHFGLSYERYCHFTSPIRRYPDLLVHRGIRHALQKKSPKKFHYDNPKL 601
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN---VMVTGFAQKKIFFETDE- 639
E+ +H S TER A +A E+V EYM ++G+ V VTGF +F + D+
Sbjct: 602 GELGEHCSMTERRADRATREAVDWLKCEYMMNKIGQAYAGHIVDVTGFG---VFVQLDQI 658
Query: 640 HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+IE IT N YY FD ++ +R S +V+ LGD + V++ + DL
Sbjct: 659 YIEGLVHITALENDYYHFDPVHHLLRGKRSGRVYRLGDTIRVIVARVDL 707
>gi|149019567|ref|ZP_01834886.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP23-BS72]
gi|147930942|gb|EDK81922.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP23-BS72]
Length = 784
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 246/714 (34%), Positives = 394/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEAKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +L
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ EY I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTIIQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|15902922|ref|NP_358472.1| Exoribonuclease R [Streptococcus pneumoniae R6]
gi|116515936|ref|YP_816344.1| ribonuclease R [Streptococcus pneumoniae D39]
gi|15458483|gb|AAK99682.1| Exoribonuclease R [Streptococcus pneumoniae R6]
gi|116076512|gb|ABJ54232.1| ribonuclease R [Streptococcus pneumoniae D39]
Length = 784
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 247/714 (34%), Positives = 395/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEAKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ S +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKSAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +L
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ EY I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTITQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|153208459|ref|ZP_01946762.1| ribonuclease R [Coxiella burnetii 'MSU Goat Q177']
Length = 736
Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats.
Identities = 226/649 (34%), Positives = 354/649 (54%), Gaps = 23/649 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G +I +++ +L + ++G + ++ F F+ +D IF+P E D
Sbjct: 71 GQVISNRRGSYALVKELELIRGRVQAHRDGFGFLIPDDGSVD--IFLPAREMRMVFTDDI 128
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSF-GKDIYIPNSK 168
VLV IT K ++ EG +V+I+E + VVG + AFV P +DI IP +
Sbjct: 129 VLVRITNPK--ERRPEGAIVEILERNTHQVVGRYFEEGGIAFVDPNHKLITQDILIPPGQ 186
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A V EIT R+ G+II+ILG ++ I L ++ N+ +
Sbjct: 187 QGEAKTGQFVVAEITVQPTKRRQAMGRIIEILGDQLTPGMEVELAIRTHELPYRWPNKVL 246
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ K++ E E D RK+L L +TIDG DA+D DDAVY E +G +KL VAIADV
Sbjct: 247 REAKKLPVELMEYDKKGRKDLRKLPFMTIDGEDARDFDDAVYCESKSSG-WKLYVAIADV 305
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV +E+ LD E + RGNSVY +V+PM P+ +SN +CSL +++L CE+ + K
Sbjct: 306 SHYVSRESALDKEGQLRGNSVYFPSKVIPMLPEALSNNLCSLVPNKDRLAIVCEIHLTAK 365
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKF 406
G V Y+ Y++VI S R+TY V A+L G+K + ++ +K + +L + L ++
Sbjct: 366 GKVSKYQFYEAVIHSHARLTYTQVAAMLRGEK---TKNEEMLPHIKNLDQLYQNLLRQRI 422
Query: 407 TRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS 466
RG+I+FE E ++ D+ K+++++ R E +IIE+ M+ AN + + + + +
Sbjct: 423 NRGAIEFETTETRIQFDQ-KGKIKRIVPVVRNEAHRIIEECMLVANVSASHFLQEKNIPT 481
Query: 467 IYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILR 526
+YR HE PD +K+ L + L FG ++ D P + +++ R + + + L+ +LR
Sbjct: 482 LYRVHEGPDEQKLHDLKQFLHAFGLRLTGGDKPTPMDYAKLLLRIEKRPDAHLLQTVMLR 541
Query: 527 ALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTID-NSIKPF--KEADL 583
+L+QA YT ED HFGL+ Y HFTSPIRRY DL+VHR + + S K F L
Sbjct: 542 SLRQAIYTPEDGGHFGLSYERYCHFTSPIRRYPDLLVHRGIRHALQKKSPKKFHYDNPKL 601
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN---VMVTGFAQKKIFFETDE- 639
E+ +H S TER A +A E+V EYM ++G+ V VTGF +F + D+
Sbjct: 602 GELGEHCSMTERRADRATREAVDWLKCEYMMNKIGQAYAGHIVDVTGFG---VFVQLDQI 658
Query: 640 HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+IE IT N YY FD ++ +R S +V+ LGD + V++ + DL
Sbjct: 659 YIEGLVHITALENDYYHFDPVHHLLRGKRSGRVYRLGDTIRVIVARVDL 707
>gi|95926461|ref|ZP_01309248.1| hypothetical protein CburR_01001741 [Coxiella burnetii RSA 331]
Length = 749
Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats.
Identities = 227/649 (34%), Positives = 354/649 (54%), Gaps = 23/649 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G +I +++ +L + ++G + ++ F F+ +D IF+P E D
Sbjct: 84 GQVISNRRGSYALVKELELIRGRVQAHRDGFGFLIPDDGSVD--IFLPAREMRMVFTDDI 141
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSF-GKDIYIPNSK 168
VLV IT K ++ EG +V+I+E + VVG + AFV P +DI IP +
Sbjct: 142 VLVRITNPK--ERRPEGAIVEILERNTHQVVGRYFEEGGIAFVDPNHKLITQDILIPPGQ 199
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A V EIT R+ G+II+ILG ++ I L ++ NE +
Sbjct: 200 QGEAKTGQFVVAEITVQPTKRRQAMGRIIEILGDQLTPGMEVELAIRTHELPYRWPNEVL 259
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ K++ E E D RK+L L +TIDG DA+D DDAVY E +G +KL VAIADV
Sbjct: 260 REAKKLPVELMEYDKKGRKDLRKLPFMTIDGEDARDFDDAVYCESKSSG-WKLYVAIADV 318
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV +E+ LD E + RGNSVY +V+PM P+ +SN +CSL +++L CE+ + K
Sbjct: 319 SHYVSRESALDKEGQLRGNSVYFPSKVIPMLPEALSNNLCSLVPNKDRLAIVCEIHLTAK 378
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKF 406
G V Y+ Y++VI S R+TY V A+L G+K + ++ +K + +L + L ++
Sbjct: 379 GKVSKYQFYEAVIHSHARLTYTQVAAMLRGEK---TKNEEMLPHIKNLDQLYQNLLRQRI 435
Query: 407 TRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS 466
RG+I+FE E ++ D+ K+++++ R E +IIE+ M+ AN + + + + +
Sbjct: 436 NRGAIEFETTETRIQFDQ-KGKIKRIVPVVRNEAHRIIEECMLVANVSASHFLQEKNIPT 494
Query: 467 IYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILR 526
+YR HE PD +K+ L + L FG ++ D P + +++ R + + + L+ +LR
Sbjct: 495 LYRVHEGPDEQKLHDLKQFLRAFGLRLTGGDKPTPMDYAKLLLRIEKRPDAHLLQTVMLR 554
Query: 527 ALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTID-NSIKPF--KEADL 583
+L+QA YT ED HFGL+ Y HFTSPIRRY DL+VHR + + S K F L
Sbjct: 555 SLRQAIYTPEDGGHFGLSYERYCHFTSPIRRYPDLLVHRGIRHALQKKSPKKFHYDNPKL 614
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN---VMVTGFAQKKIFFETDE- 639
E+ +H S TER A +A E+V EYM ++G+ V VTGF +F + D+
Sbjct: 615 GELGEHCSMTERRADRATREAVDWLKCEYMMNKIGQAYAGHIVDVTGFG---VFVQLDQI 671
Query: 640 HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+IE IT N YY FD ++ +R S +V+ LGD + V++ + DL
Sbjct: 672 YIEGLVHITALENDYYHFDPVHHLLRGKRSGRVYRLGDTIRVIVARVDL 720
>gi|116624324|ref|YP_826480.1| ribonuclease R [Solibacter usitatus Ellin6076]
gi|116227486|gb|ABJ86195.1| ribonuclease R [Solibacter usitatus Ellin6076]
Length = 762
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 229/674 (33%), Positives = 360/674 (53%), Gaps = 58/674 (8%)
Query: 68 YVKGVFRIIKNKFAFV--DKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
+V G + ++ + F+ D++ IFIP + + A+ GD VLV I + + D A+
Sbjct: 67 FVVGRLNLHRDGYGFLIADRQIPRVVGDIFIPPDSASQAMHGDRVLVRIA-RIEPDGRAD 125
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIP-------------------TGSFGKDIYIPN 166
G +VK+++ TVVG + + +V+P G+ I +
Sbjct: 126 GNIVKVLKRAHATVVGEFKIGRRGCYVVPHDERLQQWVDIPEGMEFPPAGASVDRIGVTA 185
Query: 167 SKIANADNKD--LVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFS 224
K+A + D +V VEI + P G++++ILG + ++ +I + L +F
Sbjct: 186 PKVATVEQLDGMIVNVEIMEYAGRGESPVGRVVEILGHPDDFGVDVEIVIRKHHLPHQFP 245
Query: 225 NEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
E ++Q + I + ++ R++ + I+TIDG A+D DDAV+V+KL +GNY L V
Sbjct: 246 PEVIEQAQAIPGVIPPAEFEGRRDFRGMDIVTIDGETARDFDDAVWVDKLPSGNYVLHVH 305
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADVSHYV+ T +D EA RG SVY DR +PM P E+S +CSL E++L S ME
Sbjct: 306 IADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSLVPLEDRLVLSALME 365
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILR 402
ID +G+VV E + VI+SV RMTY +V+ +L+GD+ L Y + + M EL+ +L
Sbjct: 366 IDHRGEVVRQEFTEGVIRSVARMTYTNVHKLLEGDQVLRERYKPLVPRFELMQELALVLN 425
Query: 403 IKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWL 462
K+ RGSIDF+LPE + D D + V R ++IE+FM+AANE+VA +
Sbjct: 426 RKRVRRGSIDFDLPEPLIEFD-DLGAMIGVTRAPRNIANRLIEEFMLAANESVAGHLENA 484
Query: 463 ELASIYRTHEKPDREKIVTLNEILSKFGYKI----------------------------P 494
+ASIYR HEKPD ++++ E+ + FG +
Sbjct: 485 GIASIYRIHEKPDPKRVMEFEEVAAHFGVSLGVGAIEVKRFKVTDKRRDGTKKQQAIVLA 544
Query: 495 NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSP 554
+ N++ + +Q+++ + + K ++ +LR+L+QARY+ E+ HF LA+ YTHFTSP
Sbjct: 545 DNTNINSRHYQKLVAKIEGKPEERILSFLMLRSLRQARYSTENTGHFALAADTYTHFTSP 604
Query: 555 IRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQ 614
IRRY DL+VHR+L + + P E++L IA S++ER A AE E V K V++M
Sbjct: 605 IRRYPDLIVHRLLRAVLLGKPTP-DESELGPIADDCSQSERRAADAERELVEWKKVKFMA 663
Query: 615 KRVGETLNVMVTGFAQKKIFFE-TDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVF 672
RVGE + +V + +F E T+ IE I T + Y + E + + + F
Sbjct: 664 DRVGEDFDALVISTTKYGLFVELTNLFIEGLVPIDTLPDDQYTYQENVRKVVGKRTRRQF 723
Query: 673 YLGDKVDVVLKKAD 686
+GDK+ VVL + D
Sbjct: 724 SIGDKLRVVLDRID 737
>gi|148992889|ref|ZP_01822508.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|147928341|gb|EDK79357.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68]
Length = 784
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 246/714 (34%), Positives = 394/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKMTVNDLAQALGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEIKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +L
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ EY I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTITQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVLSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGCSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|149002527|ref|ZP_01827461.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP14-BS69]
gi|147759464|gb|EDK66456.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP14-BS69]
Length = 784
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 246/714 (34%), Positives = 394/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEAKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +L
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ EY I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTITQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|116492266|ref|YP_804001.1| Exoribonuclease R [Pediococcus pentosaceus ATCC 25745]
gi|116102416|gb|ABJ67559.1| Exoribonuclease R [Pediococcus pentosaceus ATCC 25745]
Length = 781
Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats.
Identities = 238/660 (36%), Positives = 372/660 (56%), Gaps = 31/660 (4%)
Query: 51 DLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTV 110
++ D K +++ P+N V GVF F FV E+ E + I+I ++ AL+ D V
Sbjct: 56 EITEDGKFKIARPKNQLLVHGVFHANDRGFGFVSVEEDEIPD-IYISEDHTAYALNMDEV 114
Query: 111 LVEITE--KKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSK 168
V+IT KK D+G EG V KI VG+ E + P + I + + K
Sbjct: 115 DVKITRPSKKGDDRGPEGIVKKITSRHFTQAVGVFEFAPE-----PQKNVLGHINLKDKK 169
Query: 169 IAN-----------ADNKDLVAVEITFWG--DDDRKPEGKIIKILGSSTNSKNMIDALIY 215
+++ + ++ ++T + + + G K +G + I ++Y
Sbjct: 170 MSSYQFDVLEGGIQPTDGSVITAQVTQYPKPNSPKLIAGVAEKTVGHKDDPGVDILEVVY 229
Query: 216 REGLSEKFSNEAMQQTKEIIKEEIDYSN--RKNLTNLSIITIDGADAKDLDDAVYVEKLE 273
+ L +F ++ + I D R +LTN ++TIDG D+KD DDAV ++KL+
Sbjct: 230 QHELPTEFPDDVKAEIASIPDYVTDAEKKGRVDLTNEVVVTIDGDDSKDFDDAVGLKKLD 289
Query: 274 NGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEE 333
NGNY+L+V IADVSHYVK+ + LD EA R SVYL DRV+PM P+++SNGICSLN E
Sbjct: 290 NGNYRLLVNIADVSHYVKEGSPLDKEAYRRSTSVYLTDRVIPMLPRKLSNGICSLNPNVE 349
Query: 334 KLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDG-DKDLINEYSDIYEMLK 392
+L+ +CEMEI +GDVVN+++Y SVI+S RMTY DVN IL+ D+ + Y + M +
Sbjct: 350 RLSMTCEMEITPEGDVVNHKIYPSVIESDARMTYNDVNKILESKDEKTMARYEKLVPMFE 409
Query: 393 QMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAAN 452
M EL KIL K+ RG+I+F E ++I+DE + ++ + L+ RG E++IE FM+AAN
Sbjct: 410 MMGELHKILLKKRKQRGAIEFSDKEAQIIVDETGHPID-IKLRTRGTSERMIESFMLAAN 468
Query: 453 ETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERS 511
ETVAE Y + +YR HE PD E+++T E LS FG+ + + +L PK Q ++++
Sbjct: 469 ETVAEHYYKAHVPFLYRIHETPDSERMLTFFEFLSVFGHVVKGSTKDLKPKMLQSVLKKI 528
Query: 512 KDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI 571
++ +LR+++QA+Y + + HFGLA+ +YTHFTSPIRRY DL VHR++
Sbjct: 529 AGTPEEAMISVMMLRSMRQAKYDAQSLGHFGLAAEYYTHFTSPIRRYPDLFVHRLIRHYA 588
Query: 572 DNSIKPFKEA----DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTG 627
+N +A + EIA H SK ER A+ E + +K E+M VGE + +V+
Sbjct: 589 ENGTGEAAQAKYVESIPEIADHTSKLERRAIDTERDVDGMKKAEFMADHVGEEFHAVVSS 648
Query: 628 FAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
+ +F E + +E I+T +YY + E+ + ++ + F +G +V++ L + D
Sbjct: 649 VMKFGLFVELENTVEGLIHISTMKDDYYEYVEKQMALVGRNTHRTFQIGQEVEIKLMRVD 708
>gi|148988420|ref|ZP_01819867.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP6-BS73]
gi|149010378|ref|ZP_01831749.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|147764859|gb|EDK71788.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|147926101|gb|EDK77175.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP6-BS73]
Length = 784
Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats.
Identities = 246/714 (34%), Positives = 394/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEIKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +L
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ EY I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTITQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|148998588|ref|ZP_01826028.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|147755586|gb|EDK62633.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70]
Length = 784
Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats.
Identities = 246/714 (34%), Positives = 394/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKVTVNDLAQTLGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEIKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +L
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ EY I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTITQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDTVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|15900852|ref|NP_345456.1| exoribonuclease, VacB/Rnb family [Streptococcus pneumoniae TIGR4]
gi|111657964|ref|ZP_01408671.1| hypothetical protein SpneT_02000853 [Streptococcus pneumoniae
TIGR4]
gi|14972450|gb|AAK75096.1| exoribonuclease, VacB/Rnb family [Streptococcus pneumoniae TIGR4]
Length = 784
Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats.
Identities = 245/714 (34%), Positives = 393/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEIKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLEFG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ EY I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTITQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|86158854|ref|YP_465639.1| ribonuclease R [Anaeromyxobacter dehalogenans 2CP-C]
gi|85775365|gb|ABC82202.1| ribonuclease R [Anaeromyxobacter dehalogenans 2CP-C]
Length = 858
Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats.
Identities = 210/630 (33%), Positives = 346/630 (54%), Gaps = 26/630 (4%)
Query: 69 VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRV 128
V G + ++ F FV + D + E +F+P E ALDGD V +EI + G++
Sbjct: 116 VLGTLKKHRDGFGFVARID-RKGEDVFVPPHEAARALDGDLVRLEIVPARGGRTA--GKI 172
Query: 129 VKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANADNKDLVAVEITFWGDD 188
V+++E R+ +VG +FV+P + + Y+P ++ A A + ++V V + D
Sbjct: 173 VEVVERRRRLLVGTYHARGKQSFVVPADA-ELEGYVPVAETAAARDGEVVKVALD---PD 228
Query: 189 DRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQ----QTKEIIKEEIDYSNR 244
G++++ +G + + + Y G ++ F E +Q +T + ++ E D+ R
Sbjct: 229 SPALRGEVVEAIGRPGEPRVEVLKVAYARGFADVFP-EPVQAEAVETPDHVRSE-DWRGR 286
Query: 245 KNLTNLSIITIDGADAKDLDDAVYVEKLENGN----YKLIVAIADVSHYVKKETVLDLEA 300
++LT L ++TIDG DA+D DDAV+VE+L + Y+L+VAIADV+HYV+ TVLD EA
Sbjct: 287 RDLTALPLVTIDGEDARDFDDAVHVERLPSRKGKPMYRLVVAIADVAHYVRAGTVLDQEA 346
Query: 301 RHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIK 360
RG SVY +VLPM P+ +SNGICSLN + ++L +M +D +G+ EVY++V++
Sbjct: 347 FRRGTSVYFPMQVLPMLPERLSNGICSLNPEVDRLCMVADMVVDGRGETQTAEVYEAVMR 406
Query: 361 SVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
S R TY +V +L G++ + E + M EL L + RGSIDF+LPE K+
Sbjct: 407 SAARCTYTEVARVLAGER--VPGRERFRESFELMAELQDKLTAMRRRRGSIDFDLPEAKI 464
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
+L +D +V + + R +I+E+FM+AANE VA +L++IYR H PD EK+
Sbjct: 465 VLGDD-GQVAAIERRPRNRAHRIVEEFMLAANEAVARWFGARDLSTIYRVHGLPDEEKLQ 523
Query: 481 TLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
++ + G+++P P+ ++E+ + +++ +LRA+ QA Y+ ++I H
Sbjct: 524 AFLDLAAAHGFEVPELP-ADPRALNALLEKLQGHAQQRALNQLLLRAMMQAVYSPDNIGH 582
Query: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTI----DNSIKPFKEADLDEIAQHISKTERV 596
+GLA+ HY HFTSPIRRY DL+VHR+L ++ L+E+A S+ ER
Sbjct: 583 YGLAAEHYLHFTSPIRRYPDLVVHRLLKEEWARRQGRQVRGTPAEALEEMAALASERERA 642
Query: 597 AMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIECSWDITTAINYYA 655
AM+AE E +MQ +VGET + +V+ + F E +E + +
Sbjct: 643 AMEAEREIASFYAALFMQDKVGETFDGVVSAVVEFGAFVELKRWMVEGLVKVEDLPGDFE 702
Query: 656 FDEENYCMRDTDSDKVFYLGDKVDVVLKKA 685
D + + D + +GD+V V++ A
Sbjct: 703 LDVVQHALVDAAGGRAIRVGDEVKVLVAAA 732
>gi|81429021|ref|YP_396021.1| Exoribonuclease R, RNase II family [Lactobacillus sakei subsp.
sakei 23K]
gi|78610663|emb|CAI55714.1| Exoribonuclease R, RNase II family [Lactobacillus sakei subsp.
sakei 23K]
Length = 784
Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats.
Identities = 243/661 (36%), Positives = 366/661 (55%), Gaps = 28/661 (4%)
Query: 52 LIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKE-GIFIPKEEFNNALDGDTV 110
L+MD + LP + V+GVF F FV D E + IFI N A++GDTV
Sbjct: 56 LLMDDAGKFRLPASQRLVEGVFHANDRGFGFVSMVDKEPSDPDIFIAPPNTNFAMNGDTV 115
Query: 111 LVEITEK--KKSDKGAEGRVVKIIEHRKNTVVG------ILEKSKNFAFVIPTGSFGKD- 161
V I ++ + S +G EG+V K+I +VG ++K K + S K
Sbjct: 116 EVAIIKEAEENSRRGPEGKVAKVITRGIEEIVGEFMPYSDIQKEKT-GLIGYIQSHAKKL 174
Query: 162 ----IYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKII--KILGSSTNSKNMIDALIY 215
IY+ ++ + + D+V V+IT + D + + I ++LG+ + + +++Y
Sbjct: 175 SSYLIYLTDNGL-HPQKGDMVQVDITSYPSIDTPGQMRGIAKQVLGNKNDPGVDVLSIVY 233
Query: 216 REGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLE 273
+ + F E Q++ I E D RK+LT+ ++TIDG D+KD DDAV V +L+
Sbjct: 234 QHDIKTDFPEEVRLQSEAIPDTVLETDKFGRKDLTDQPVVTIDGDDSKDFDDAVNVRQLD 293
Query: 274 NGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEE 333
NG++ L V IADVS+YV + + LD EA RG S YL DRV+PM P +SNGICSLN E
Sbjct: 294 NGHFYLGVHIADVSYYVTEGSPLDAEALERGTSTYLTDRVIPMLPFRLSNGICSLNPDVE 353
Query: 334 KLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLK 392
+L +CEMEID G+VV++ ++ SVIKS RMTY +VN IL D D DL ++Y+ + M +
Sbjct: 354 RLALTCEMEIDEHGNVVDHNIFPSVIKSTARMTYNNVNKILTDQDADLRDQYAPLVPMFE 413
Query: 393 QMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAAN 452
M EL +IL K+ RG+IDFE E K+I+DE N K + L+ RG E++IE FM+AAN
Sbjct: 414 TMAELHEILLKKRHNRGAIDFEEDEAKIIVDE-NGKAIDIELRQRGLSERMIESFMLAAN 472
Query: 453 ETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERS 511
ETVAE +YR HE PD +K+ E ++ +G ++ + + P QE++ +
Sbjct: 473 ETVAEHYSTANAPFLYRIHETPDTDKMKNFFEFITAYGIQVQGSSKKVTPMMLQEVLTQI 532
Query: 512 KDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI 571
+ + ++ +LR+++QA Y+ E + HFGLA+ YTHFTSPIRRY DLMVHR++ +
Sbjct: 533 EGQPEQPIITTMLLRSMQQAHYSDESLGHFGLAAEFYTHFTSPIRRYPDLMVHRLIHNYA 592
Query: 572 DNSI----KPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTG 627
N + K L IA+ S ER ++ E E V +K EYM +VG + +++
Sbjct: 593 TNGMTIEEKEKWAPKLQPIAEQTSLEERRSIDTEREVVDLKKAEYMLDKVGNEYDAVISS 652
Query: 628 FAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
+F +E I+ +YY+F E + + K+F +G V V + D
Sbjct: 653 VTSFGMFIALPSTVEGLVHISQMKDDYYSFVESQLALVGERTHKMFRIGQPVRVKVANVD 712
Query: 687 L 687
L
Sbjct: 713 L 713
>gi|148984718|ref|ZP_01817986.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP3-BS71]
gi|147923109|gb|EDK74224.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP3-BS71]
Length = 784
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 245/714 (34%), Positives = 394/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEIKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +L
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ +Y I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTITQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|116618815|ref|YP_819186.1| Exoribonuclease R [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|116097662|gb|ABJ62813.1| Exoribonuclease R [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 774
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 229/656 (34%), Positives = 360/656 (54%), Gaps = 32/656 (4%)
Query: 47 IDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALD 106
+ GD I D K+ +N+GY G +R F FV +D E FI E A+
Sbjct: 50 VRDGDAI-DIKNGYQYNKNAGYTIGEYRANDKGFGFVKYDD--ELPDFFINPENTLQAMQ 106
Query: 107 GDTVLVEITEKKKS-DKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIP 165
GDTV V + + D+G EG+V +I+EH +VG F+ + ++++
Sbjct: 107 GDTVRVSTLKPSPTPDRGPEGKVEEILEHAYERIVG------TFSLGSEARNMIGELHLS 160
Query: 166 NSKIAN-----------ADNKDLVAVEITFWGDD--DRKPEGKIIKILGSSTNSKNMIDA 212
+ K N ++ +V E+T + D R+ + + LG I
Sbjct: 161 DKKTMNFKVLVSGDGLTPNDGQVVVAEVTRFPDKIHPREIIATVTETLGYKDEPGMDILQ 220
Query: 213 LIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVE 270
++Y + + +F E + EI E E +++ R+++T +++TIDGAD KD+DDAV
Sbjct: 221 IVYSKKVPNEFPQEVLDDALEIPSEVSESEWAGREDITEQTLVTIDGADTKDIDDAVVAW 280
Query: 271 KLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNE 330
KL+NGNY L V IADVSHYV + + +D EA +RG SVYL DRV+PM P+ ISNGI SLN
Sbjct: 281 KLDNGNYHLGVHIADVSHYVTEGSSIDAEAYNRGTSVYLTDRVIPMLPRNISNGIASLNP 340
Query: 331 KEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEM 390
+L S EMEID +G+VVN+ ++ SV+KS RMTY VN IL+GD + +EY+ + M
Sbjct: 341 NVVRLAMSAEMEIDPQGNVVNHRLHTSVMKSHARMTYDAVNKILEGDVFVQDEYAKLVPM 400
Query: 391 LKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIA 450
K M EL +IL + RG+I+F+ PE ++I+DED K + L++RG E++IE FM+A
Sbjct: 401 FKVMGELHEILYNMRKKRGAIEFDAPEAQIIVDED-GKATDIKLRERGTAERMIESFMLA 459
Query: 451 ANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYK-IPNFDNLHPKQFQEIIE 509
ANETVAE L++ +YR HE PD ++ + E G+ + + + P Q+++E
Sbjct: 460 ANETVAEHFDKLKVPFLYRIHETPDADRAKSFFEFSKALGHPVVGDPSKVTPIMLQKLME 519
Query: 510 RSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-- 567
++ +LRA+KQA+Y+ + + HFGL + +YTHFTSPIRRY DL VHR++
Sbjct: 520 DVAGDPAEQMISTMMLRAMKQAKYSPDPVGHFGLGAEYYTHFTSPIRRYPDLTVHRLIKW 579
Query: 568 FSTIDNSIKPFKE--ADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMV 625
+ + ++ ++ + L +I + S ER A+ E + +K EYM +V + +V
Sbjct: 580 YERHGHGVQAQEKYASHLGKIGEDTSSRERRAIDTERDVDALKKAEYMMDKVNLEFDGVV 639
Query: 626 TGFAQKKIFFETDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
+ +F + +E I+ ++Y +DE + + ++F +G KV V
Sbjct: 640 NSALKFGLFISLENTVEGLVHISNLTDDHYEYDESHAALIGRSKHRIFQIGQKVRV 695
>gi|82703074|ref|YP_412640.1| VacB and RNase II family 3'-5' exoribonuclease [Nitrosospira
multiformis ATCC 25196]
gi|82411139|gb|ABB75248.1| VacB and RNase II family 3'-5' exoribonucleases [Nitrosospira
multiformis ATCC 25196]
Length = 735
Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats.
Identities = 220/653 (33%), Positives = 360/653 (55%), Gaps = 15/653 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G ++ ++K + + E +KG + ++F F+ +D +F+ +E AL GD
Sbjct: 74 GQIMRNRKGDICMVEKLALIKGKVQGHPDEFGFLIPDDGSPD--LFLSAKEMRKALHGDR 131
Query: 110 VLV-EITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFV-IPTGSFGKDIYIPNS 167
V+V EI ++ + EG +V+++E +VG L +V +DI IP
Sbjct: 132 VMVREIGVDRRGRR--EGAIVEVLERAVTQLVGRLHADHGILYVEAENRRISQDILIPRE 189
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
+ NA +V VEI +P G+II+ILG T I+ + + L +F E
Sbjct: 190 ESMNARAGQVVIVEILQQPSKHAQPIGRIIEILGDYTAPGMEIEIALRKHDLPYQFPQEV 249
Query: 228 MQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
+ + + + + D R++L +L ++TIDG A+D DDAVY E+ + +YKL VAIAD
Sbjct: 250 EKLSARLPSKVLKKDLIKREDLRHLPLVTIDGETARDFDDAVYCER-DGKDYKLYVAIAD 308
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VSHYVK LD EA +RGNSVY RV+PM P+ +SNG+CSLN + ++L+ CE+ +D
Sbjct: 309 VSHYVKPGDALDQEAYNRGNSVYFPRRVIPMLPEALSNGLCSLNPEVDRLSMVCEISLDF 368
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDK-DLINEYSDIYEMLKQMLELSKILRIK 404
GD Y Y +V+ S R+TY V A+L+ K + +Y D+ ++ + +L K+L
Sbjct: 369 AGDFKGYRFYPAVMFSHARLTYTKVAAMLENSKGEEAKQYKDLLPHIQLLYKLFKVLLKA 428
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E ++I + D K+E++L R + +IIE+ M+AAN ++ + +
Sbjct: 429 RNLRGAIDFETIETRMIFN-DEGKIERILPIQRNDAHRIIEECMLAANVCASDFLQKHKQ 487
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
A++YR HE P EK+ L + L +FG ++ DN K + + KD+ + L+ +
Sbjct: 488 ATLYRVHEGPTPEKLAALRDFLKEFGVQLGGGDNPRAKDYARTLSTIKDRPDAQLLQTVM 547
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLD 584
LR+L+QA Y+ +++ HFGLA YTHFTSPIRRY DL+VHR + + ++ + + +
Sbjct: 548 LRSLRQAVYSPDNVGHFGLAYESYTHFTSPIRRYPDLLVHRAIKAVLNKA--AYSPGNWH 605
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIEC 643
E+ +H S+TER A +A + YMQ R+GE +V+G A +F D ++E
Sbjct: 606 ELGEHCSQTERRADEATRDVEAWLKCYYMQDRIGECFEGVVSGVAGFGLFVALDGIYVEG 665
Query: 644 SWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVV 695
++ +Y+ FD + + + K + LGD++ V L + DL + +I V
Sbjct: 666 LVHVSELPSDYFHFDAVRHMLLGERTGKRYRLGDRLRVRLVRVDLESSKIDFV 718
>gi|149006346|ref|ZP_01830058.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|147762123|gb|EDK69085.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74]
Length = 784
Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 245/714 (34%), Positives = 393/714 (55%), Gaps = 46/714 (6%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG 67
++IKE L+D +T++ + L K I LS +M++KH++ E+
Sbjct: 3 DRIKEYLQDKGKVTVNDLAQALGKDSSKDFRELIKTLS-------LMERKHQIRFEEDGS 55
Query: 68 Y-----------VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITE 116
+KG+F KN F FV E E++ +F+ K + N A+DGDTV V I +
Sbjct: 56 LTLEIKKKHEITLKGIFHAHKNGFGFVSLEG--EEDDLFVGKNDVNYAIDGDTVEVVIKK 113
Query: 117 KKKSDKG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKI 169
+KG AE +++ I+EH TVVG + EK K ++ + IY+ +
Sbjct: 114 VADRNKGTAAEAKIIDILEHSLTTVVGQIVLDQEKPKYAGYIRSKNQKISQPIYVKKPAL 173
Query: 170 ANADNKDLVAVEITFWGDDDRKPEGK-------IIKILGSSTNSKNMIDALIYREGLSEK 222
+ +++ V I D+ P K ++ ++G ST+ + ++ + +
Sbjct: 174 -KLEGTEVLKVFI------DKYPSKKHDFFVASVLDVVGHSTDVGIDVLEVLESMDIVSE 226
Query: 223 FSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLI 280
F +++ + + + D R +L + TIDGADAKDLDDAV+++ L+NGN +L
Sbjct: 227 FPEAVVKEAESVPDAPSQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELG 286
Query: 281 VAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCE 340
V IADVS+YV + + LD EA +R SVY+ DRV+PM P+ +SNGICSLN + ++LT S
Sbjct: 287 VHIADVSYYVTEGSALDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDRLTQSAI 346
Query: 341 MEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKI 400
MEID G VVNY + ++VIK+ RMTY DVN IL GD++ EY I ++ M +L +
Sbjct: 347 MEIDKHGRVVNYTITQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHET 406
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
L + RG+++F+ E K+++D+ V+ ++L+ RG E++IE FM+ ANETVAE
Sbjct: 407 LENMRVKRGALNFDTNEAKILVDKQGKPVD-IVLRQRGIAERMIESFMLMANETVAEHFS 465
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSML 519
L+L IYR HE+P EK+ + S FG +I + + Q+I+ + + + +
Sbjct: 466 KLDLPFIYRIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADV 525
Query: 520 VHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-TIDNSIKPF 578
+ +LR+++QA Y+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ I
Sbjct: 526 LSMMLLRSMQQACYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMIRDYGRSKEIAEH 585
Query: 579 KEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETD 638
E + EIA S ER A++AE E +K EYM++ VGE + +V+ + +F E
Sbjct: 586 FEQVIPEIATQSSNRERRAIEAEREVEAMKKAEYMEEYVGEEYDAVVSSIVKFGLFVELP 645
Query: 639 EHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+E IT +Y F+E + +R S F +G ++ + +++AD +T EI
Sbjct: 646 NTVEGLIHITNLPEFYHFNERDLTLRGEKSGITFRVGQQIRIRVERADKMTGEI 699
>gi|149278034|ref|ZP_01884173.1| exoribonuclease II [Pedobacter sp. BAL39]
gi|149231232|gb|EDM36612.1| exoribonuclease II [Pedobacter sp. BAL39]
Length = 709
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 240/690 (34%), Positives = 382/690 (55%), Gaps = 32/690 (4%)
Query: 20 LTLDQITSFLEWSPKKKKDNKIIIL-SWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKN 78
L Q+++ L + ++ + IL G + +K + L + ++ G + +
Sbjct: 29 LNYKQVSAKLNITDPDSRETILDILKQQTQKGVFVEAQKGKFKLKDLKTFIIGKVDMTAD 88
Query: 79 KFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNT 138
AF+ +D EK+ +F+ + +NAL GD V V I KK K EG VV+IIE K
Sbjct: 89 GAAFIIPDDEFEKD-VFVSARKLHNALHGDKVKVYIYAKKSGRKN-EGEVVEIIERAKTD 146
Query: 139 VVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKII 197
+G+++ S FAFVI +DI++P S + A N+ V V+IT W + + P G +I
Sbjct: 147 FIGVIKISDRFAFVIADDKKMMQDIFVPLSDLNGAKNRQKVQVKITDWPEGVKNPIGTVI 206
Query: 198 KILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI---DYSNRKNLTNLSIIT 254
ILG + ++A++ + G +F E +++ I E+I + +R++ T
Sbjct: 207 TILGEQGENNTEMNAILAQYGFPLQFPPE-VEKEANAIPEQITADEIKDRRDFRETVTFT 265
Query: 255 IDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVL 314
ID ADAKD DDA+ +KL+NG+Y++ V IADV+HYV + LD EA R SVYLVDRV+
Sbjct: 266 IDPADAKDFDDAISFKKLDNGHYEVGVHIADVAHYVTPNSALDKEAYGRATSVYLVDRVI 325
Query: 315 PMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL 374
PM P+ +SNG+CSL E+KL F+ E+D K +++N ++VI S R +Y++ ++
Sbjct: 326 PMLPERLSNGVCSLRPHEDKLCFAAVFELDNKANIINEWFGRTVIHSDRRFSYEEAQEVI 385
Query: 375 DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLL 434
+ N+ D E + ++ EL+ ILR KKF G+I FE E+K LDED + V +
Sbjct: 386 E------NKTGDFSEEILKLNELAYILRDKKFKNGAISFESTEVKFKLDEDGKPL-GVYV 438
Query: 435 KDRGEGEKIIEDFMIAANETVAERIY-----WLELASIYRTHEKPDREKIVTLNEILSKF 489
K+R + K+IEDFM+ AN+ VAE I + IYR+H+ P+ E + ++F
Sbjct: 439 KERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFIYRSHDSPNLENLGNFALFAARF 498
Query: 490 GYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHY 548
GYKI D K ++E + K+ ++ + +R++ +A YT + SH+GLA HY
Sbjct: 499 GYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAVYTTKKTSHYGLAFDHY 558
Query: 549 THFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDE---IAQHISKTERVAMKAEDESV 605
THFTSPIRRY D+MVHR+L + ++ K AD +E A H S E+ A AE S+
Sbjct: 559 THFTSPIRRYPDVMVHRLLAAYLNKE----KSADAEEYEIAASHSSTMEKRAADAERASI 614
Query: 606 RIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDI---TTAINYYAFDEENYC 662
+ K EY+++ +G +++G + ++ E ++ +C I + ++Y DE+NYC
Sbjct: 615 KYKQAEYLEENIGNLYKGIISGVTEWGMYVELADN-KCEGMIRLRDLSDDFYVLDEKNYC 673
Query: 663 MRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+ K + LGD+V V +KK DL +I
Sbjct: 674 IIGQRKKKTYQLGDEVQVKVKKVDLSKRQI 703
>gi|28377650|ref|NP_784542.1| ribonuclease R [Lactobacillus plantarum WCFS1]
gi|28270483|emb|CAD63385.1| ribonuclease R [Lactobacillus plantarum WCFS1]
Length = 811
Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats.
Identities = 226/651 (34%), Positives = 355/651 (54%), Gaps = 23/651 (3%)
Query: 55 DKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEI 114
D L + + V+G F F FV + + I+I + A+ GD V VEI
Sbjct: 58 DDHDHFKLVQETKTVEGSFHGNDKGFGFVRYD--PDLPDIYINPDNTQFAITGDDVAVEI 115
Query: 115 TEKKK--SDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGSFGKDIYIPNSKIANA 172
+ SD+G EG++V I++ +VG S + +I + KD + ++
Sbjct: 116 IRPARPGSDRGPEGKIVSIVKRNYTQIVGAYTPSTDEDGIIGSVEI-KDKKLSKYQLLIT 174
Query: 173 DNK------DLVAVEITFWGDDDRKPE--GKIIKILGSSTNSKNMIDALIYREGLSEKFS 224
D +++ E+ + D G +++GS + + ++Y+ + F
Sbjct: 175 DQGLHPTEGEVIIAEVAAYPDAQHPTRMIGIAKQVIGSVDDPGMDVLQVVYQHDVPSVFP 234
Query: 225 NEAMQQTKEIIKEEIDYSN--RKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
E + I D R ++T+ ++TIDGA++KDLDDAV +L NGN+ L V
Sbjct: 235 EEVTDEANRIPDYVTDEEKVGRVDITDQPLVTIDGAESKDLDDAVVAWRLPNGNFHLGVH 294
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADVSHYV + + LD EA RG SVYL DRV+PM P+ +SNGICSLN E+L SCEME
Sbjct: 295 IADVSHYVTENSELDREAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPDVERLAMSCEME 354
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDG-DKDLINEYSDIYEMLKQMLELSKIL 401
ID G++VN+++++SVI+S RMTY VN IL+ D +Y+D+ +M M +L +IL
Sbjct: 355 IDQTGEIVNHKIFQSVIRSHARMTYDAVNQILEAHDPKTREKYADLVDMFDTMGDLHRIL 414
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
+ RG+IDF+ E K+I+DE + ++ + L+ RG E++IE FM+AANETVA+
Sbjct: 415 YKHRRHRGAIDFDDNEAKIIVDEAGHPID-IQLRVRGLAERMIESFMLAANETVAKNYSQ 473
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLV 520
L++ IYR HE PD +++++ E ++ FG + + ++ PK Q+++++ K +V
Sbjct: 474 LKVPFIYRVHETPDSDRMLSFFEFVTNFGVSVKGSSKDVKPKMLQDVLKKVAGKPEEAMV 533
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKE 580
+LR++KQARY + + HFGLA+ +YTHFTSPIRRY D+MVHR++ +N
Sbjct: 534 SVMMLRSMKQARYADQSLGHFGLAAPYYTHFTSPIRRYPDMMVHRLIRHYAENGTGEEAR 593
Query: 581 A----DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE 636
A +L IA+ S ER + E + +K EYM VGET +V + +F E
Sbjct: 594 ARYRDNLPNIAETTSDHERRGIDTERDVDSMKKAEYMADHVGETFEAVVDSVMKFGLFVE 653
Query: 637 TDEHIECSWDITTA-INYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
+ +E I+T +YY + E+ + + + F +G V V L + D
Sbjct: 654 LENTVEGLVHISTMDDDYYEYVEKQLALVGRKTKRTFRIGQPVKVQLMRVD 704
>gi|75763004|ref|ZP_00742797.1| Exoribonuclease II [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74489505|gb|EAO52928.1| Exoribonuclease II [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 580
Score = 346 bits (887), Expect = 3e-93, Method: Composition-based stats.
Identities = 202/452 (44%), Positives = 284/452 (62%), Gaps = 9/452 (1%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEE-KEGIFIPKEEFNNALD 106
+ G +I + +R LPE V+G FAFV E+ + + +FIP E N AL
Sbjct: 53 EKGLVIRTRSNRYGLPEKMNLVRGKLIGHARGFAFVVPEEKKTGDDDLFIPPTELNGALH 112
Query: 107 GDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIP 165
GDTVL ++ + + EG +V+I+E +VG +SKNF FVIP + DI+I
Sbjct: 113 GDTVLARLSSQSSGSR-QEGSIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFIL 171
Query: 166 NSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
S A V V+IT + ++ EG++I+ILG + I ++I++ L F
Sbjct: 172 KSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPE 231
Query: 226 EAMQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVA 282
E M+ E I EE D +R++L + I+TIDGADAKDLDDAV V KLENGNYKL V
Sbjct: 232 EVMEHANSVPETISEE-DLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVH 290
Query: 283 IADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEME 342
IADVSHYV++ + +D+EA R SVYLVDRV+PM P +SNGICSLN K ++LT SCEME
Sbjct: 291 IADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEME 350
Query: 343 IDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKIL 401
I+ GDVV +E+++SVIK+ RMTY DV +IL D D++LI Y + M K+M +L++IL
Sbjct: 351 INNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPMFKEMGQLAQIL 410
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
R K+ RG+IDF+ E KV++DE+ K V+++DR EK+IE+FM+ ANETVAE +W
Sbjct: 411 REKRMRRGAIDFDFKEAKVLVDEE-GKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHW 469
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKI 493
+ + +YR HE P +K+ E ++ FGY +
Sbjct: 470 MNVPFMYRVHEDPKEDKLERFFEFVTNFGYAV 501
>gi|56476098|ref|YP_157687.1| exoribonuclease RNase R (VacB protein) [Azoarcus sp. EbN1]
gi|56312141|emb|CAI06786.1| exoribonuclease RNase R (VacB protein) [Azoarcus sp. EbN1]
Length = 846
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 215/651 (33%), Positives = 363/651 (55%), Gaps = 18/651 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G +I +++ LP+ + ++G + F F+ ++D + +F+ +E L GD
Sbjct: 92 GQVIRNRRDAFLLPDKADLIRGRVVGHADGFGFLIRDDGQPD--VFLGPKEMRQVLHGDR 149
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYI-PNS 167
V+ +T + + EG++V+++E VVG + + V+P +DI + P
Sbjct: 150 VIARVTGLDRRGR-PEGKIVEVLERANTRVVGRVLDTHGVQVVVPENRRLAQDILLAPGG 208
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
K A +V VE+ +P GK++++LG+ + I+ + + L +FS+EA
Sbjct: 209 K--KAVPGQVVTVELVVQPTKFAQPIGKVVEVLGNYADPGMEIEIALRKHELPYEFSSEA 266
Query: 228 MQQTKEI---IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+T+++ ++++ D+ R+++TNL ++TIDG AKD DDAVY E+ G ++LIVAIA
Sbjct: 267 KAETRKLPLKVRKK-DWVGREDITNLPLVTIDGETAKDFDDAVYCERQGRG-FRLIVAIA 324
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVSHYV+ LD +A RGNSVY RV+PM P+++SNG+CSLN + E+L C+M I
Sbjct: 325 DVSHYVEAGGSLDADAEDRGNSVYFPRRVIPMLPEKLSNGLCSLNPQVERLCMVCDMSIS 384
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRI 403
G + Y Y +V+ S R+TY V A L + D + + L+ + +L ++L
Sbjct: 385 PTGAIKAYRFYPAVMFSHARLTYNQVAAALYEQDPAARDAVCPLLPHLENLDKLFRVLLK 444
Query: 404 KKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE 463
+ RG+IDFE E ++I DE K+E+++ + R + ++IE+ M+AAN +E + E
Sbjct: 445 ARAKRGAIDFETTETRMIFDE-AGKIERIVPEVRNDAHRLIEECMLAANVCASEFLQKRE 503
Query: 464 LASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKT 523
++YR HE P EK+ L L++FG + D + +++E+ K++ + L+
Sbjct: 504 HPALYRVHEGPTPEKLEKLRNFLTEFGLGLGGGDEPKAGDYGKLLEKVKERPDAQLLQTV 563
Query: 524 ILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADL 583
+LR+L+QA Y+ +++ HFGLA YTHFTSPIRRY DL+VHR + + ++N + ++ D
Sbjct: 564 MLRSLRQAVYSPDNVGHFGLAYEAYTHFTSPIRRYPDLLVHRSIKAALEN--RTYEAGDW 621
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIE 642
D+I H S TER A +A + V YMQ +VGE + V+ +F D+ IE
Sbjct: 622 DQIGMHCSATERRADEATRDVVSWLKCYYMQDKVGEEFSGSVSAVVPFGLFVALDDIFIE 681
Query: 643 CSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
I+ +Y+ +DE + + + + L D+V V L + DL T +I
Sbjct: 682 GLVHISDLGSDYFHYDETRHELAGERTGARYRLSDRVRVQLVRVDLETTKI 732
>gi|90416167|ref|ZP_01224099.1| ribonuclease R [marine gamma proteobacterium HTCC2207]
gi|90331892|gb|EAS47106.1| ribonuclease R [marine gamma proteobacterium HTCC2207]
Length = 777
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 207/635 (32%), Positives = 351/635 (55%), Gaps = 30/635 (4%)
Query: 80 FAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTV 139
+ FV ++ E++ I++ + DGD VLV I+ + + + EG +V ++E + +
Sbjct: 53 YGFVSPLEAGEQD-IYLSSRQMRRVFDGDVVLVRISGRDRRGR-PEGTLVDVVERKTTEL 110
Query: 140 VGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIK 198
VG FV P +DI I ++ A +V V IT +R P G I +
Sbjct: 111 VGRYFCESGIHFVRPDNPRISQDILIAADQLNGAAAGQIVLVGITDAPSRNRAPSGHIAE 170
Query: 199 ILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGA 258
+LG + I+ I G+ ++++E +T I + D R +L +L ++TIDG
Sbjct: 171 VLGDHLDPGLEIEVSIRNYGIPHQWNDEVQAETDAIPDQVTDKEFRVDLRSLPLVTIDGE 230
Query: 259 DAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFP 318
DA+D DDAVY + G +KLIVAIADVSHYVK + LD++A RGNSVY + V+PM P
Sbjct: 231 DARDFDDAVYCQPKPRGGWKLIVAIADVSHYVKPGSALDIQAFERGNSVYFPNHVVPMLP 290
Query: 319 KEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILD--- 375
+++SNG+CSLN +E++L CEM+I +GDV Y+ Y++V+ S RMTY V I++
Sbjct: 291 EKLSNGLCSLNPREDRLCMVCEMQISREGDVTKYQFYEAVMYSHARMTYTQVAQIIEERG 350
Query: 376 --GDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVL 433
D ++ ++++ I + + +L ++L ++ RG+IDF+ E +++ D K+ +++
Sbjct: 351 SPEDANIRDQFAAILPQIDSLHDLYRVLHKRRSERGAIDFDTQETRILFDS-QRKISQII 409
Query: 434 LKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKI 493
R E ++IE+ M+AAN A+ + +L ++YR HE P +++ ++ + L + G +
Sbjct: 410 PVKRTEAHRLIEECMLAANVCTAKFLEKSKLPALYRVHEGPSEDRLTSVRDFLGELGMGL 469
Query: 494 PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTS 553
D+ P+ +Q ++ +K+++ + ++ +LR++ QA Y E++ HFGLA YTHFTS
Sbjct: 470 GGGDDPQPEDYQRVLRSAKNRDDASVIQSVLLRSMSQAVYQAENLGHFGLAFEGYTHFTS 529
Query: 554 PIRRYSDLMVHRVLFSTIDNS-------------------IKPFKEADLDEIAQHISKTE 594
PIRRY+DL+VHR + S I +S I P++ LD+ H+S TE
Sbjct: 530 PIRRYADLLVHRAIRSLIRSSKKVSGVVRIEGAKELTKDKIYPYELPSLDDTGAHLSVTE 589
Query: 595 RVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIECSWDIT-TAIN 652
R A +A + V EY+ RVG+ + +VT +F DE ++E +T +
Sbjct: 590 RRADEATRDVVNWLKCEYLVDRVGQEYSGVVTAVTGFGLFVMLDELYVEGLVHVTGLPKD 649
Query: 653 YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
YY + + M + +VF LG+K+ V + + +L
Sbjct: 650 YYNHEAAQHRMVGERTGRVFRLGEKLRVKVVRVNL 684
>gi|148358249|ref|YP_001249456.1| (exo)ribonuclease R [Legionella pneumophila str. Corby]
gi|148280022|gb|ABQ54110.1| (exo)ribonuclease R [Legionella pneumophila str. Corby]
Length = 699
Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats.
Identities = 218/659 (33%), Positives = 349/659 (52%), Gaps = 15/659 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G ++ D++ R L + ++G + + F F +D E + + +E + GD
Sbjct: 42 GQIMQDRRGRFCLLQKINLLRGTVQGHPDGFGFFIPDDGSED--MVLSAKEMRAVMHGDM 99
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIP-TGSFGKDIYIPNSK 168
VL + + + E ++ +++EH TVVG FVIP + +DI IP
Sbjct: 100 VLAYQSGLDRRGR-PEAKIHEVLEHANTTVVGRFFTDHGVNFVIPDSKRLTQDISIPQEF 158
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A N +V VE+ + + + G++I ILG I I+ G+ ++ ++ +
Sbjct: 159 IGEAKNGQIVLVELIAYPNKRSQAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEWPDDVL 218
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
+ +I ++ E R +L NL +TIDG DAKD DDAVY K G ++L VAIADV
Sbjct: 219 AEVGKIPQQISEEQLKGRTDLRNLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYVAIADV 278
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV K++ LD EA RGNSVY +V+PM P+ +SNG+CSLN ++L E+ I +
Sbjct: 279 SHYVAKDSALDQEAARRGNSVYFPGKVVPMLPEALSNGVCSLNPHVDRLCMVAELSITQE 338
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILD-GDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y++VI S R+TY V A L+ G D ++ ++ ML+ + +L +L +
Sbjct: 339 GKISRSRFYRAVIHSHARLTYTSVGAWLEQGKAD--EKHQALWPMLESLYDLYHVLLDTR 396
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG++DFE E ++ DE N K++ ++ R + K+IE+ M+AAN A + E+
Sbjct: 397 RLRGAMDFETTETRIEFDE-NKKIKCIVPVIRNDAHKLIEECMLAANVATARFLEKAEIP 455
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR H P+ +KI L + L + G + PK FQ + D+ L+ +L
Sbjct: 456 TLYRVHAAPEEDKITALRQFLGELGLSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETVML 515
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIK---PFKEAD 582
R+LKQA+Y + HFGLA S YTHFTSPIRR+ DL++HR + +DN + D
Sbjct: 516 RSLKQAQYVESNEGHFGLAYSAYTHFTSPIRRFPDLLIHRAIGHLLDNHPVYEFEYSHED 575
Query: 583 LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HI 641
++ + +H S TER A +A E + EYMQ ++G+ ++ IF E DE ++
Sbjct: 576 MNRLGKHSSMTERRADEATREVITWLKCEYMQDKLGQVFKGRISAVTSFGIFVELDEIYV 635
Query: 642 ECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
E +T+ N YY FD + + +V+ LGDK+ V++ + DL +I P++D
Sbjct: 636 EGLVHVTSLKNDYYTFDSAKHRLIGARGGQVYRLGDKMTVLVARVDLNERKIDFEPVED 694
>gi|126646883|ref|ZP_01719393.1| ribonuclease R [Algoriphagus sp. PR1]
gi|126576931|gb|EAZ81179.1| ribonuclease R [Algoriphagus sp. PR1]
Length = 733
Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats.
Identities = 226/665 (33%), Positives = 378/665 (56%), Gaps = 36/665 (5%)
Query: 42 IILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEE 100
I+ ++SG + + ++ S ++ +++G + +FAF+ +D E+ EG I + + +
Sbjct: 63 ILAKLLESGHVSKNPRNYYSSTKDPSFIEGTVDFVNPRFAFIIPDDPEKSEGDIMVKEAD 122
Query: 101 FNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT-GSFG 159
ALDGD V V + K EGRV++++E ++ VG +E S FAFV+P
Sbjct: 123 MKQALDGDKVRVMVNPLKSKFGKPEGRVLEVVERARDEFVGRVEISPRFAFVVPDFKKMH 182
Query: 160 KDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGL 219
KDI++ + A + + V V++T W + D+ P GK+I++LG + + I +++ GL
Sbjct: 183 KDIFVHRGDLEGAKHNEKVVVKLTEWREGDKNPTGKVIRVLGEAGLHEVEIHSIMAEFGL 242
Query: 220 S----EKFSNEAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENG 275
E+ + EA +++I +EI +RK+ + TID ADAKD DDA+ + L NG
Sbjct: 243 PFEYPEEPNKEANAISEKITAKEI--KSRKDFRGVPTFTIDPADAKDFDDAISYQVLPNG 300
Query: 276 NYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKL 335
N ++ V IADV+HYV+ +T L+ EA +R SVYLVDR +PM P+ +SNG+CSL E+KL
Sbjct: 301 NLEIGVHIADVTHYVQPKTALEKEAFNRATSVYLVDRTIPMLPERLSNGLCSLRPNEDKL 360
Query: 336 TFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQML 395
TFSC E+D + +++ + + ++VI S R Y++ +D N+ D + L +
Sbjct: 361 TFSCVFEMDREANILKHWIGRTVIHSDRRFAYEEAQENID------NQSGDFFAELTLLN 414
Query: 396 ELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETV 455
+L+K +R K+F G+++FE E+K LD+ + +++K+R + K+IE+FM+ AN+ V
Sbjct: 415 DLAKKVRKKRFNNGAVNFETVEVKFKLDDKGTPL-GLIVKERKDIHKLIEEFMLLANKFV 473
Query: 456 AERIYWLELAS---IYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQ----FQEII 508
AE IY +YRTH+ PD E++ T + +FG++ FD + ++ +++
Sbjct: 474 AEFIYKKNKGKDTFVYRTHDFPDMERLDTFSGFAKRFGHE---FDIENEQKISGALNKLM 530
Query: 509 ERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF 568
+ + K ++ + +R++ +A+YT E HFGLA +HYTHFTSPIRRY D+MVHR+L
Sbjct: 531 DEIQGKPEQNVLEQLAIRSMAKAKYTTEPKGHFGLAFAHYTHFTSPIRRYPDMMVHRLL- 589
Query: 569 STIDNSIKPFKEADLDEIAQ---HISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMV 625
D+ ++ K D D Q H S E+ A AE S++ K VE+M + +V
Sbjct: 590 ---DHYLQGGKSPDPDSWEQKCVHSSDREKRAADAERASIKYKQVEFMSLAEDKDYEGIV 646
Query: 626 TGFAQKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVFYLGDKVDVVL 682
+G + +F E E +C I +YY FD++N + + + K+ LGDKV V +
Sbjct: 647 SGITEWGVFVEISE-TKCEGMIRVQDMEDDYYEFDQKNMRLVGSKTKKMITLGDKVKVRV 705
Query: 683 KKADL 687
D+
Sbjct: 706 VNTDI 710
>gi|110636884|ref|YP_677091.1| exoribonuclease II [Cytophaga hutchinsonii ATCC 33406]
gi|110279565|gb|ABG57751.1| exoribonuclease II [Cytophaga hutchinsonii ATCC 33406]
Length = 750
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 230/675 (34%), Positives = 367/675 (54%), Gaps = 30/675 (4%)
Query: 34 KKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSG---YVKGVFRIIKNKFAFVDKEDSEE 90
K KK K ++ + G L DK S +SG V G + +FA+V E +
Sbjct: 50 KDKKALKDVLEDLVREGILAKDKSGLYSNAGSSGGESLVTGRVDFVNARFAYVIPEGEKA 109
Query: 91 KEGIFIPKEEFNNALDGDTVLVEITEK----KKSDKGAEGRVVKIIEHRKNTVVGILEKS 146
I+I + + ALDGD V V + +K K K AEG +V+I+E ++ + VG +E S
Sbjct: 110 DNDIWISSNKMSGALDGDIVRVAVYKKSGGGNKGTKSAEGEIVEIVERKRTSFVGRIEVS 169
Query: 147 KNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGD-DDRKPEGKIIKILGSST 204
AFV+P G DI+IP I A + V V+IT W D++ P GK+ ++LG +
Sbjct: 170 ARHAFVVPDGRKMHVDIFIPKEHINGAKTGEKVLVDITAWPTRDEKSPTGKVTEVLGMAG 229
Query: 205 NSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKD 262
++ + A++ GL +F N+ ++ ++I E E + R+++ + TID DAKD
Sbjct: 230 ENETEMHAILAEFGLPYEFPNQVIKAAQDITAETSEAEIKKRRDMRGTTTFTIDPEDAKD 289
Query: 263 LDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEIS 322
DDA+ + L+NGN+++ V IADVSHYV+ LD EA R SVYLVDR +PM P+ +S
Sbjct: 290 FDDAISFKYLDNGNWEIGVHIADVSHYVQPGDTLDKEAYRRATSVYLVDRCVPMLPERLS 349
Query: 323 NGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLIN 382
N +CSL E+KLTFS EID V++ +++I S R +Y+ +++
Sbjct: 350 NELCSLRPNEDKLTFSAIFEIDADAKVLDEWFGRTIIHSTRRFSYEQAQEVIE------T 403
Query: 383 EYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEK 442
+ D+ + L + L+K +R ++F G+I FE E+K LD K V+ K R + K
Sbjct: 404 QQGDLVKELTILNTLAKKMRAQRFKEGAISFETVEVKFQLDA-KGKPLAVVPKVRKDAHK 462
Query: 443 IIEDFMIAANETVAERIYWLELAS------IYRTHEKPDREKIVTLNEILSKFGYKIP-N 495
+IE+FM+ AN+ VAE ++ L +YRTH+ P+ EK+ +L +FG+K+ +
Sbjct: 463 LIEEFMLLANKRVAEFVFNLRKGKGTSNTMVYRTHDAPNPEKLASLATFAKRFGHKVELD 522
Query: 496 FDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPI 555
+N K ++ + + K ++ +R + +A Y++E HFGLA HY+HFTSPI
Sbjct: 523 DENAIAKNLNKLSDEVEGKPEQNVLQSLAIRTMSKAIYSIEPDMHFGLAFKHYSHFTSPI 582
Query: 556 RRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQK 615
RRY D+M HR+L +D KE + E +H S E++A +AE S++ K VE+MQ
Sbjct: 583 RRYPDVMAHRLLQHYLDGGKSADKEYYI-EACEHSSAQEKLAAEAERSSIKFKQVEFMQS 641
Query: 616 RVGETLNVMVTGFAQKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVF 672
+G+ +V+G + +F E E +C + A ++Y D +NY + + ++
Sbjct: 642 SIGKEFEGIVSGVTEFGMFVEIVE-TKCEGMVRLADMDDDFYEVDTDNYRIVGKRNKRMI 700
Query: 673 YLGDKVDVVLKKADL 687
LGD V V++K +L
Sbjct: 701 TLGDSVQVIVKSTNL 715
>gi|54293054|ref|YP_125469.1| hypothetical protein lpl0091 [Legionella pneumophila str. Lens]
gi|53752886|emb|CAH14321.1| hypothetical protein [Legionella pneumophila str. Lens]
Length = 726
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 220/659 (33%), Positives = 352/659 (53%), Gaps = 15/659 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G ++ D++ R L + ++G + + F F +D E + + +E + GD
Sbjct: 69 GQIMQDRRGRFCLLQKINLLRGTVQGHPDGFGFFIPDDGSED--MVLSAKEMRAVMHGDL 126
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIP-TGSFGKDIYIPNSK 168
VL + + + E ++ +++EH TVVG FVIP + +DI IP
Sbjct: 127 VLAYQSGLDRRGR-PEAKIHEVLEHANTTVVGRFFTDHGVNFVIPDSKRLTQDISIPQEF 185
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A N +V VE+ + + + G++I ILG I I+ G+ ++ ++ +
Sbjct: 186 IGEAKNGQIVLVELIAYPNKRSQAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEWPDDVL 245
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
+ +I ++ E R +L NL +TIDG DAKD DDAVY K G ++L VAIADV
Sbjct: 246 AEVGKIPQQISEEQLKGRTDLRNLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYVAIADV 305
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV K++ LD EA RGNSVY +V+PM P+ +SNG+CSLN ++L E+ I +
Sbjct: 306 SHYVAKDSALDQEAARRGNSVYFPGKVVPMLPEALSNGVCSLNPHVDRLCMVAELSITQE 365
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILD-GDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y++VI S R+TY V A L+ G D ++ ++ ML+ + +L +L +
Sbjct: 366 GKISRSRFYRAVIHSHARLTYTSVGAWLEQGKAD--EKHQALWPMLESLYDLYHVLLDTR 423
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG++DFE E ++ DE N K++ ++ R + K+IE+ M+AAN A + E+
Sbjct: 424 RLRGAMDFETTETRIEFDE-NKKIKCIVPVIRNDAHKLIEECMLAANVATARFLEKAEIP 482
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR H P+ +KI L + L + G + PK FQ + D+ L+ +L
Sbjct: 483 TLYRVHAAPEEDKITALRQFLGELGLSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETVML 542
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDN-SIKPFKEA--D 582
R+LKQA+Y + HFGLA S YTHFTSPIRR+ DL++HR + +DN I F+ + D
Sbjct: 543 RSLKQAQYVESNEGHFGLAYSAYTHFTSPIRRFPDLLIHRAIGHILDNHPIYEFEYSHED 602
Query: 583 LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HI 641
++ + +H S TER A +A E + EYMQ ++G+ ++ IF E DE ++
Sbjct: 603 MNRLGKHSSMTERRADEATREVITWLKCEYMQDKLGQVFKGRISAVTSFGIFVELDEIYV 662
Query: 642 ECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
E +T+ N YY FD + + +V+ LGDK+ V++ + DL +I P++D
Sbjct: 663 EGLVHVTSLKNDYYTFDSAKHRLIGARGGQVYRLGDKMTVLVARVDLNERKIDFEPVED 721
>gi|52840347|ref|YP_094146.1| (exo)ribonuclease R [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52627458|gb|AAU26199.1| (exo)ribonuclease R [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 726
Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats.
Identities = 219/659 (33%), Positives = 349/659 (52%), Gaps = 15/659 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G ++ D++ R L + ++G + + F F +D E + + +E + GD
Sbjct: 69 GQIMQDRRGRFCLLQKINLLRGTVQGHPDGFGFFIPDDGSED--MVLSAKEMRAVMHGDL 126
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIP-TGSFGKDIYIPNSK 168
VL + + + E ++ +++EH TVVG FVIP + +DI IP
Sbjct: 127 VLAYQSGLDRRGR-PEAKIHEVLEHANTTVVGRFFTDHGVNFVIPDSKRLTQDISIPQEF 185
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A N +V VE+ + + + G++I ILG I I+ G+ ++ ++ +
Sbjct: 186 IGEAKNGQIVLVELIAYPNKRSQAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEWPDDVL 245
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
+ +I ++ E R +L NL +TIDG DAKD DDAVY K G ++L VAIADV
Sbjct: 246 AEVGKIPQQISEEQLKGRTDLRNLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYVAIADV 305
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV K++ LD EA RGNSVY +V+PM P+ +SNG+CSLN ++L E+ I +
Sbjct: 306 SHYVAKDSALDQEAARRGNSVYFPGKVVPMLPEALSNGVCSLNPHVDRLCMVAELSITQE 365
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILD-GDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y++VI S R+TY V A L+ G D ++ ++ ML+ + +L IL +
Sbjct: 366 GKISRSRFYRAVIHSHARLTYTSVGAWLEQGKAD--EKHQALWPMLESLYDLYHILLDTR 423
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG++DFE E ++ DE N K++ ++ R + K+IE+ M+AAN A + E+
Sbjct: 424 RLRGAMDFETTETRIEFDE-NKKIKCIVPVIRNDAHKLIEECMLAANVATARFLEKAEIP 482
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR H P+ +KI L + L + G + PK FQ + D+ L+ +L
Sbjct: 483 TLYRVHAAPEEDKITALRQFLGELGLSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETVML 542
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIK---PFKEAD 582
R+LKQA+Y + HFGLA S YTHFTSPIRR+ DL++HR + +DN + D
Sbjct: 543 RSLKQAQYVESNEGHFGLAYSAYTHFTSPIRRFPDLLIHRAIGHLLDNHPVYEFEYSHED 602
Query: 583 LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HI 641
++ + +H S TER A +A E + EYMQ ++G+ ++ IF E DE ++
Sbjct: 603 MNRLGKHSSMTERRADEATREVITWLKCEYMQDKLGQVFKGRISAVTSFGIFVELDEIYV 662
Query: 642 ECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
E +T+ N YY FD + + +V+ LGDK+ V++ + DL +I P++D
Sbjct: 663 EGLVHVTSLKNDYYTFDSAKHRLIGARGGQVYRLGDKMTVLVARVDLNERKIDFEPVED 721
>gi|54296088|ref|YP_122457.1| hypothetical protein lpp0106 [Legionella pneumophila str. Paris]
gi|53749873|emb|CAH11254.1| hypothetical protein [Legionella pneumophila str. Paris]
Length = 726
Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 219/659 (33%), Positives = 349/659 (52%), Gaps = 15/659 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G ++ D++ R L + ++G + + F F +D E + + +E + GD
Sbjct: 69 GQIMQDRRGRFCLLQKINLLRGTVQGHPDGFGFFIPDDGSED--MVLSAKEMRAVMHGDM 126
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIP-TGSFGKDIYIPNSK 168
VL + + + E ++ +++EH TVVG FVIP + +DI IP
Sbjct: 127 VLAYQSGLDRRGR-PEAKIHEVLEHANTTVVGRFFTDHGVNFVIPDSKRLTQDISIPQEF 185
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A N +V VE+ + + + G++I ILG I I+ G+ ++ ++ +
Sbjct: 186 IGEAKNGQIVLVELIAYPNKRSQAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEWPDDVL 245
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
+ +I ++ E R +L NL +TIDG DAKD DDAVY K G ++L VAIADV
Sbjct: 246 AEVGKIPQQISEEQLKGRTDLRNLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYVAIADV 305
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV K++ LD EA RGNSVY +V+PM P+ +SNG+CSLN ++L E+ I +
Sbjct: 306 SHYVAKDSALDQEAARRGNSVYFPGKVVPMLPEALSNGVCSLNPHVDRLCMVAELSITQE 365
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILD-GDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y++VI S R+TY V A L+ G D ++ ++ ML+ + +L IL +
Sbjct: 366 GKISRSRFYRAVIHSHARLTYTAVGAWLEQGKTD--EKHQALWPMLESLYDLYHILLDTR 423
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG++DFE E ++ DE N K++ ++ R + K+IE+ M+AAN A + E+
Sbjct: 424 RLRGAMDFETTETRIEFDE-NKKIKCIVPVIRNDAHKLIEECMLAANVATARFLEKAEIP 482
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR H P+ +KI L + L + G + PK FQ + D+ L+ +L
Sbjct: 483 TLYRVHAAPEEDKITALRQFLGELGLSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETVML 542
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIK---PFKEAD 582
R+LKQA+Y + HFGLA S YTHFTSPIRR+ DL++HR + +DN + D
Sbjct: 543 RSLKQAQYVESNEGHFGLAYSAYTHFTSPIRRFPDLLIHRAIGHLLDNHPVYEFEYSHED 602
Query: 583 LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HI 641
++ + +H S TER A +A E + EYMQ ++G+ ++ IF E DE ++
Sbjct: 603 MNRLGKHSSMTERRADEATREVITWLKCEYMQDKLGQVFKGRISAVTSFGIFVELDEIYV 662
Query: 642 ECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
E +T+ N YY FD + + +V+ LGDK+ V++ + DL +I P++D
Sbjct: 663 EGLVHVTSLKNDYYTFDSAKHRLIGARGGQVYRLGDKMTVLVARVDLNERKIDFEPVED 721
>gi|94970991|ref|YP_593039.1| Ribonuclease R [Acidobacteria bacterium Ellin345]
gi|94553041|gb|ABF42965.1| Ribonuclease R [Acidobacteria bacterium Ellin345]
Length = 827
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 247/774 (31%), Positives = 380/774 (49%), Gaps = 128/774 (16%)
Query: 45 SWIDSGDLIMDKKHRLSLPENS---GYVKGVFRIIKNKFAFVDKEDSEEKEGI----FIP 97
S + G L+ R ++ + + + G + ++ + FV +E K I +IP
Sbjct: 44 SLVKRGKLVTAAAGRYAMVKTTRAQNLIAGKLSMHRDGYGFVMPGAAEVKSAIEGDIYIP 103
Query: 98 KEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS 157
+A+ GD VL EI KK D AEGR+++ + +VVG K FV P
Sbjct: 104 PHAIGSAMHGDEVLAEIVATKK-DGRAEGRILRTLNRAHTSVVGTFHYDK-VNFVRPIDE 161
Query: 158 -FGKDIYIP----------------------NSKIANADNKD---------LVAVEITFW 185
+DI IP ++ + K +V VEIT W
Sbjct: 162 KITQDIVIPKGMEWPPDVEREEGEKRKKRSEQDRVIGTEAKRREWTDLDNLVVNVEITEW 221
Query: 186 GDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFS----NEAMQQTKEIIKEEIDY 241
+ P G++++ILG + + +I + L +F +EA + EI +EI +
Sbjct: 222 PSPTQSPRGRVVEILGYEDDFGVDTEIMIRKHHLPHQFPAAVLSEARSFSPEIPAKEIKH 281
Query: 242 SNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEAR 301
R++ L I+TIDG A+D DDAV V L NGN++L V IADV+HYV E+ +DLEAR
Sbjct: 282 --RRDYRELPIVTIDGETARDFDDAVLVSHLPNGNFELQVHIADVAHYVTDESDIDLEAR 339
Query: 302 HRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKS 361
RG SVY DR +PM P E+S ICSL + E+L SC MEID +G++V YE+ + VI+S
Sbjct: 340 LRGTSVYFPDRAVPMLPLELSTDICSLRPQVERLVLSCVMEIDHQGEIVGYELNEGVIRS 399
Query: 362 VHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
RMTY V+ +L GD +L Y+ + + + M +L+ IL K+ RGSIDF+LPE +
Sbjct: 400 AERMTYTAVHGVLQGDTELRTRYAPLVKNFELMRDLASILNKKRQKRGSIDFDLPEPVIE 459
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
DE N ++ V +R E ++IE+FM+AANE+VA + ++AS+YR HEKPD +++
Sbjct: 460 FDE-NGLMKGVTRSERNEAHRLIEEFMLAANESVATYLEARKIASLYRIHEKPDPKRVYE 518
Query: 482 LNEILSKFGY-------------------------------KIPNFDNLHPKQFQEIIER 510
+ + FGY +IP ++ P+ +Q++ ++
Sbjct: 519 FETLAASFGYSLGVGSLPIERVHLKADKRARHGTGRRSEPIEIPKDVHITPRMYQKLTQK 578
Query: 511 SKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFST 570
+ K ++ +LR+L+QARY+ ++ HF LA++ YTHFTSPIRRY DL+VHR+L
Sbjct: 579 LEGKPEERILSYLMLRSLRQARYSEKNEGHFALAATSYTHFTSPIRRYPDLIVHRILKQV 638
Query: 571 IDNSIK---------------------------------------------PFKEADLDE 585
+ + P E L +
Sbjct: 639 LKEQAEKNDHGVPVGVGGAVNEVDGHSPWSKRDGHERKGKQQHEDRPPLTGPIPEEQLRQ 698
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECS 644
IA+ S ER A AE E + K +++MQ RVGE ++ + +F E TD +E
Sbjct: 699 IAEESSDAERRADDAERELLEWKKIKFMQDRVGEEFTGLIVSVTKYGLFVELTDLFVEGL 758
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLL--TLEIAVV 695
+ T +++ + E + S K + LGDKV V+L + D + L+ AVV
Sbjct: 759 VPLLTLQGDHFNYHENTKQLIGERSRKTYSLGDKVRVILDRIDRMQRKLQFAVV 812
>gi|150003660|ref|YP_001298404.1| ribonuclease R [Bacteroides vulgatus ATCC 8482]
gi|149932084|gb|ABR38782.1| ribonuclease R [Bacteroides vulgatus ATCC 8482]
Length = 715
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 228/660 (34%), Positives = 373/660 (56%), Gaps = 27/660 (4%)
Query: 42 IILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKN-KFAFVDKEDSEEKEGIFIPKEE 100
II I+ L +K L ++ + GVF+ N K +F+ + E IFI +
Sbjct: 57 IITEMIEDDFLQEVEKGHYKLNDHGLIMTGVFQRKSNGKNSFIPDDGGET---IFIAERN 113
Query: 101 FNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFG 159
+A++ D V + + K+K ++ EG V++I+E +T VG L+ K +AF++ +
Sbjct: 114 SAHAMNNDKVKIALFAKRK-NRNPEGEVIEILERANDTFVGTLKVEKFYAFLLTENRTLA 172
Query: 160 KDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGL 219
DI+IP K+ N D V+I W ++ + P G++I ILG + + + A++ GL
Sbjct: 173 NDIFIPKDKLKGGKNGDKAVVKIVEWPEEAKNPIGQVIDILGKAGENTTEMHAILAEFGL 232
Query: 220 SEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNY 277
+ ++I E E DY+ R++ N++ TID DAKD DDA+ + ++ G +
Sbjct: 233 PYVYPKNVETAAEKIPAEISEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLW 292
Query: 278 KLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTF 337
++ V IADV+HYVK+ V+D EA R SVYLVDR +PM P+ + N ICSL EEKL F
Sbjct: 293 EVGVHIADVTHYVKEGGVIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAF 352
Query: 338 SCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLEL 397
S ++ KG+V + + ++IKS R TY++ +++ + D E + ++ +L
Sbjct: 353 SVIFNMNEKGEVKDSRIVHTIIKSDRRFTYEEAQKVIETGE------GDYKEEILELNKL 406
Query: 398 SKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAE 457
++ILR ++ G+IDF+ E+K +DE K V K+ E K+IE+FM+ AN TVAE
Sbjct: 407 AQILRKQRLAAGAIDFDRVEVKFEIDE-TGKPLSVYFKESKEANKLIEEFMLLANRTVAE 465
Query: 458 RIYWL---ELASI--YRTHEKPDREKIVTLNEILSKFGYKIPNFDNLH--PKQFQEIIER 510
+I + + A + YR H+ PD +K+ LN +++FGYKI + K +++
Sbjct: 466 KIGKVPKNKKAKVFPYRIHDLPDPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDD 525
Query: 511 SKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFST 570
K+K+ LV LRA+++ARY+ +I H+GLA +YTHFTSPIRR+ D+MVHR+L
Sbjct: 526 IKNKKEQNLVETVSLRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRY 585
Query: 571 IDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQ 630
+ + +EA +E+ H S+ E++A AE SV+ K VE+M +R+G + +++G +
Sbjct: 586 LAGG-RTVQEAKYEELCDHSSEMEQIAANAERASVKYKQVEFMGERLGMEFDGVISGVTE 644
Query: 631 KKIFFETDEHIECSWDITT---AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
++ E +E+ +C I +YY FDE+NYC+ K F LGD V + + +A+L
Sbjct: 645 WGLYVELNEN-KCEGMIPMRDLGDDYYDFDEKNYCLTGRRHHKKFSLGDPVTIKVARANL 703
>gi|55822595|ref|YP_141036.1| exoribonuclease R [Streptococcus thermophilus CNRZ1066]
gi|55738580|gb|AAV62221.1| exoribonuclease R [Streptococcus thermophilus CNRZ1066]
Length = 817
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 227/642 (35%), Positives = 363/642 (56%), Gaps = 18/642 (2%)
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG- 123
N V+GVF KN F F+ +DSE+ +FI + + +A+DGDTV I + +G
Sbjct: 66 NQVTVEGVFHANKNGFGFLHVDDSEDD--MFIGRNDVGHAIDGDTVAAVIKKPADRLRGT 123
Query: 124 -AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDL 177
AE RVV+I+E TVVG EK ++ + IYI +A + ++
Sbjct: 124 MAEARVVEIVERSLKTVVGKFILNDEKEPYVGYIKSKNQKIQQPIYIKKGPVA-LEGTEI 182
Query: 178 VAVEITFWGDDDRKP-EGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI-- 234
+ V+I + + G + I+G ++ + ++ + +F + M + + +
Sbjct: 183 IKVDIEKYPNRHHDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAVPD 242
Query: 235 IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKET 294
+ D R +L TIDGADAKDLDDAV++++L NGNY+L V IADVS+YV + +
Sbjct: 243 APSQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGS 302
Query: 295 VLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEV 354
L+ EA RG SVY+ DRV+PM P+ +SNGICSLN ++LT S MEI KG V+N+++
Sbjct: 303 ALNREAAARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTLSAIMEITPKGKVINHKI 362
Query: 355 YKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFE 414
+SVIK+ RMTY DVN +L G+ + I ++ I + + M EL KIL + RG+++F+
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 415 LPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKP 474
E ++++++ V+ +++++RG E++IE FM+AANE VAE +L IYR HE+P
Sbjct: 423 TSEARILVNDKGMPVD-IVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEEP 481
Query: 475 DREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARY 533
EK+ + S FG +I N + Q+ + R + K + +++ +LR+++QARY
Sbjct: 482 KAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQARY 541
Query: 534 TVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK---EADLDEIAQHI 590
+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ +N + + E + E+A
Sbjct: 542 SEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATSS 601
Query: 591 SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTA 650
S ER A+ AE +K EYM++ VG+ + +V + +F E +E ITT
Sbjct: 602 STLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTVEGLVHITTL 661
Query: 651 INYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+Y ++E ++ S K F +G + V L +AD T +I
Sbjct: 662 PEFYNYNERTMTLQGEKSGKTFRVGQPIRVKLIRADKETGDI 703
>gi|55820704|ref|YP_139146.1| exoribonuclease R [Streptococcus thermophilus LMG 18311]
gi|55736689|gb|AAV60331.1| exoribonuclease R [Streptococcus thermophilus LMG 18311]
Length = 817
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 227/642 (35%), Positives = 363/642 (56%), Gaps = 18/642 (2%)
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG- 123
N V+GVF KN F F+ +DSE+ +FI + + +A+DGDTV I + +G
Sbjct: 66 NQVTVEGVFHANKNGFGFLHVDDSEDD--MFIGRNDVGHAIDGDTVAAVIKKPADRLRGT 123
Query: 124 -AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDL 177
AE RVV+I+E TVVG EK ++ + IYI +A + ++
Sbjct: 124 MAEARVVEIVERSLKTVVGKFILNDEKEPYVGYIKSKNQKIQQPIYIKKGPVA-LEGTEI 182
Query: 178 VAVEITFWGDDDRKP-EGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI-- 234
+ V+I + + G + I+G ++ + ++ + +F + M + + +
Sbjct: 183 IKVDIEKYPNRHHDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAVPD 242
Query: 235 IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKET 294
+ D R +L TIDGADAKDLDDAV++++L NGNY+L V IADVS+YV + +
Sbjct: 243 APSQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGS 302
Query: 295 VLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEV 354
L+ EA RG SVY+ DRV+PM P+ +SNGICSLN ++LT S MEI KG V+N+++
Sbjct: 303 ALNREAAARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTLSAIMEITPKGKVINHKI 362
Query: 355 YKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFE 414
+SVIK+ RMTY DVN +L G+ + I ++ I + + M EL KIL + RG+++F+
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 415 LPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKP 474
E ++++++ V+ +++++RG E++IE FM+AANE VAE +L IYR HE+P
Sbjct: 423 TSEARILVNDKGMPVD-IVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEEP 481
Query: 475 DREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARY 533
EK+ + S FG +I N + Q+ + R + K + +++ +LR+++QARY
Sbjct: 482 KAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQARY 541
Query: 534 TVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK---EADLDEIAQHI 590
+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ +N + + E + E+A
Sbjct: 542 SEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATSS 601
Query: 591 SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTA 650
S ER A+ AE +K EYM++ VG+ + +V + +F E +E ITT
Sbjct: 602 STLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTVEGLVHITTL 661
Query: 651 INYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+Y ++E ++ S K F +G + V L +AD T +I
Sbjct: 662 PEFYNYNERTMTLQGEKSGKTFRVGQPIRVKLIRADKETGDI 703
>gi|74316626|ref|YP_314366.1| exoribonuclease II [Thiobacillus denitrificans ATCC 25259]
gi|74056121|gb|AAZ96561.1| exoribonuclease II [Thiobacillus denitrificans ATCC 25259]
Length = 758
Score = 342 bits (876), Expect = 6e-92, Method: Composition-based stats.
Identities = 213/648 (32%), Positives = 346/648 (53%), Gaps = 11/648 (1%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L++++K +L LP+ +KG + F FV E E + +F+ +E + L GD
Sbjct: 83 GQLMLNRKRQLCLPDKLDLIKGRVEGHPDGFGFVVPE--EGGDDLFLSPKEMHRVLHGDK 140
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VLV + + + E ++V+++EH VVG F+I +DI +P
Sbjct: 141 VLVRVAGFDRRGR-REAKIVEVLEHVNKFVVGRYYLEGGVGFLIAENRRINQDILVPPEN 199
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
NA + +V VEI + G++ ++LGS T I+ + + L F E
Sbjct: 200 AGNAKSGQVVTVEIVSQPGAHNEAVGRVTEVLGSFTGPGMEIEIALRKHDLPYVFPPEVE 259
Query: 229 QQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
Q ++ + + D + R+++ L ++TIDG A+D DDAVY E L Y+L+VAIADV
Sbjct: 260 AQASKLPNKVLKKDLAGREDIRQLPLVTIDGETARDFDDAVYCEPLGRSGYRLVVAIADV 319
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV LD E +RGNSVY RV+PM P+ +SNG+CSLN + ++L+ C+M I
Sbjct: 320 SHYVHPRDALDSEGFNRGNSVYFPRRVIPMLPEALSNGLCSLNPEVDRLSMVCDMRITTA 379
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKF 406
G++ Y Y +VI S R+TY V L G +++ + L+ + +L + L +
Sbjct: 380 GNIKEYRFYPAVIHSHARLTYNQVWDWLSGAAKPEKKHAALMPHLEALDKLFRTLLKARA 439
Query: 407 TRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS 466
RG+IDF E +++ D DN K+++++ R + +IIE+ M+AAN ++ ++ + +
Sbjct: 440 KRGAIDFGSTETQIVFD-DNGKIKEIVPVIRNDAHRIIEECMLAANVCASDFLHENKQPA 498
Query: 467 IYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILR 526
++R HE P EK+ L L++FG + D H K + ++E KD+ L+ +LR
Sbjct: 499 LFRVHEGPTPEKLTALRGFLAEFGLDLGGGDKPHAKDYAALLENIKDRPDHGLLQTVMLR 558
Query: 527 ALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEI 586
+L+QA Y+ ++ HFGLA YTHFTSPIRRY DL+VHR + + ++ P K L EI
Sbjct: 559 SLRQAIYSPDNKGHFGLAYEAYTHFTSPIRRYPDLLVHRGIKAVLNGEKLPAK--GLAEI 616
Query: 587 AQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIECSW 645
H S TER A A + +MQ R+G+ + V+ +F DE IE
Sbjct: 617 GAHCSMTERRADDATRDVDAWLKTYFMQDRIGDEYDGTVSAVTSFGMFVAIDEIFIEGLV 676
Query: 646 DITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
++ +Y+ +D+ + M + K + LGD+V + + +AD+ T +I
Sbjct: 677 HVSELGQDYFHYDQAKHMMLGERTGKRYRLGDRVRIKVMRADIETSKI 724
>gi|152979715|ref|YP_001345344.1| ribonuclease R [Actinobacillus succinogenes 130Z]
gi|150841438|gb|ABR75409.1| ribonuclease R [Actinobacillus succinogenes 130Z]
Length = 792
Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 228/666 (34%), Positives = 355/666 (53%), Gaps = 39/666 (5%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE +KG ++ + F+ E +K+ +FIP + + G
Sbjct: 80 NDGQLVFTKRKRYALPEKLDLLKGTVIGHRDGYGFLQIEGRTDKKDLFIPNAQMQRVMHG 139
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + T + + E R+V+++E+RK +VG + +V+P S +DI +PN
Sbjct: 140 DFVLAQPTALDRKGR-QEVRIVRVLENRKKQIVGRFFLEEGIGYVVPDDSRISRDILVPN 198
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYR---------- 216
A +V VE+ + +P G II+ILG + +K M + R
Sbjct: 199 EDRKGARMGQVVVVELKPRTANLSQPVGAIIEILGDNM-AKGMEVEIALRNYDIPHVFPP 257
Query: 217 --EGLSEKFSNEAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLEN 274
E +KFS E +Q K + R NL +L ++TID DA+D DDAVY K +N
Sbjct: 258 AVEKYVKKFSEEVPEQAK---------AGRVNLCDLPLVTIDSEDARDFDDAVYCRKEKN 308
Query: 275 GNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEK 334
G ++L VAIADVS+YV+ T LD EAR+RGNSVY +RV+PM P+ +SNG+CSLN + ++
Sbjct: 309 G-WRLWVAIADVSYYVRLRTALDSEARNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDR 367
Query: 335 LTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQM 394
L CEM+ID KG + Y+ Y++V+ S R+TY V ILDGD++L Y+ + +K++
Sbjct: 368 LCMVCEMQIDEKGLLKAYQFYEAVMNSHARLTYTKVAKILDGDEELRQRYAALVPHIKEL 427
Query: 395 LELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANET 454
+ K L + RG+IDFE E K I +E ++E++ +R + KIIE+ MI AN +
Sbjct: 428 HAMYKTLLNARHKRGAIDFETIESKFIFNE-MGRIERIEAVERNDAHKIIEECMILANIS 486
Query: 455 VAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDK 514
A + E ++YR H P EK+ L++ G + + + E++ + K +
Sbjct: 487 AANFMERHEEPALYRIHAGPSEEKLTAFRTFLAELGLSLGGGLKPNTNDYAELLNQVKQR 546
Query: 515 ETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHR---VLFSTI 571
+ L+ +LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR L +
Sbjct: 547 PDAELIQTMLLRSLSQAMYEPDNIGHFGLALDEYAHFTSPIRRYPDLTLHRGIKYLLAKA 606
Query: 572 DNSIKPFKEA--------DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNV 623
S + E+ ++ E+ +H S TER A A E EYMQ +GE +
Sbjct: 607 KGSSRRTTESGGYHYNTDEMAELGEHCSMTERRADDATREVADWLKCEYMQDHIGEEFDG 666
Query: 624 MVTGFAQKKIFFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+++ F D+ I+ ++T N YY +D + +S ++ LGDKV V
Sbjct: 667 IISSVTGFGFFVRLDDLFIDGLVHVSTLDNDYYQYDAAGQRLIGENSGMLYRLGDKVRVR 726
Query: 682 LKKADL 687
++ A+L
Sbjct: 727 VEAANL 732
>gi|150009927|ref|YP_001304670.1| ribonuclease R [Parabacteroides distasonis ATCC 8503]
gi|149938351|gb|ABR45048.1| ribonuclease R [Parabacteroides distasonis ATCC 8503]
Length = 728
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 211/608 (34%), Positives = 344/608 (56%), Gaps = 25/608 (4%)
Query: 94 IFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVI 153
+FI + +A+DGD V V++ K+K + EG VV+I+E ++ T VG L+ +K FAF+I
Sbjct: 121 VFIAERNSGHAMDGDKVKVQLFAKRKGAE-PEGEVVEILESKERTFVGKLQVAKGFAFLI 179
Query: 154 PTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDA 212
+ DI+IP K+ N D V I W D+ + P G++I ILG + + + A
Sbjct: 180 TENKTLANDIFIPKDKLKGGKNGDKAIVRIVEWPDEAKNPLGEVIDILGIAGQNTAEMHA 239
Query: 213 LIYREGLSEKFSN---EAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYV 269
++ GL K+ + +A + E I E + NR++ ++ TID DAKD DDA+
Sbjct: 240 ILAEFGLPYKYPSSVEKAADKIPEAISPE-EIENREDFRGITTFTIDPKDAKDFDDALSA 298
Query: 270 EKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLN 329
+L+NGN+++ V IADV+HYVK + V+D EA+ R SVYLVDR +PM P+ + N ICSL
Sbjct: 299 RRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQSRATSVYLVDRTIPMLPERLCNQICSLR 358
Query: 330 EKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYE 389
EEKL FS E++ V N + +++IKS R TY++ +++ + D E
Sbjct: 359 PDEEKLCFSAVFELNSDAVVQNSRICRTIIKSDRRFTYEEAQEVIETGE------GDYKE 412
Query: 390 MLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMI 449
+ + +L+K LR ++F G+I+F+ E+K +DE V +V K + K+IE+FM+
Sbjct: 413 EILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKPV-RVYFKVSKDANKLIEEFML 471
Query: 450 AANETVAERIYW-----LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLH--PK 502
AN TVAE + + +YR HE PD +K+ + +FGYK+ K
Sbjct: 472 LANRTVAEFVGRPPKGKTKKTFVYRIHELPDPDKMENFASFIRRFGYKLKTDGTKTDVSK 531
Query: 503 QFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLM 562
+++ + K L+ +RA+++ARY+ E+I H+GLA +YTHFTSPIRRY D+M
Sbjct: 532 GINSLLDNVQGKPEENLIETVAIRAMQKARYSTENIGHYGLAFEYYTHFTSPIRRYPDMM 591
Query: 563 VHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
VHR+L + + + +++ H S E+VA AE S++ K VE+MQ ++G +
Sbjct: 592 VHRLLERYLAGG-RSVIQKKYEDLCDHCSSMEQVAANAERASIKYKQVEFMQDKLGMAFD 650
Query: 623 VMVTGFAQKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVFYLGDKVD 679
+++G + ++ E +E+ +C + +YY FDE+NYC+ + + LGD +
Sbjct: 651 GVISGVTEWGLYVELNEN-KCEGLVPIRDLDDDYYEFDEKNYCLLGRRKKRQYRLGDPIT 709
Query: 680 VVLKKADL 687
+ + +A+L
Sbjct: 710 IKVAQANL 717
>gi|24379988|ref|NP_721943.1| putative exoribonuclease R (RNASE R) [Streptococcus mutans UA159]
gi|24377975|gb|AAN59249.1|AE014992_4 putative exoribonuclease R (RNAase R) [Streptococcus mutans UA159]
Length = 778
Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 248/714 (34%), Positives = 393/714 (55%), Gaps = 29/714 (4%)
Query: 8 EKIKELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDS-GDLIMDKKHRLSL---- 62
EKI L++ ++D + S L+ + +K + I +S ++S G L ++ +SL
Sbjct: 3 EKIITYLEEKGKSSVDDLASSLDMAGAQKFPSLIKEISKLESKGKLRFEQDGTISLRKKK 62
Query: 63 -PENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSD 121
++ V G+FR K F FV +++EE +FI + + +A+DGDTV V I +
Sbjct: 63 EKKDQVTVTGIFRANKAGFGFVSIDEAEED--LFIGRNDVGHAVDGDTVEVAIKKVANRL 120
Query: 122 KG--AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKIANADN 174
KG AE RVVKI+EH VVG EK ++ + IYI I D
Sbjct: 121 KGTAAEARVVKIVEHSLKAVVGRFVLDDEKPPYIGYIKSKNQKITQKIYIKKEPIV-LDG 179
Query: 175 KDLVAVEITFWGDDDRKPE---GKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQT 231
+++ V I + R+ + + ++G + + ++ + +F + +++
Sbjct: 180 TEIIKVAIEKY--PTRRYDYFVASVEDVIGHQDDVGIDVLEVLESMDIVSEFPDAVLKEA 237
Query: 232 KEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHY 289
+ + E D R +L TIDGADAKDLDDAV+V+ L+NGN++L V IADVS+Y
Sbjct: 238 QSVPDAPSEKDLIGRVDLRKEITFTIDGADAKDLDDAVHVKLLDNGNFELGVHIADVSYY 297
Query: 290 VKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDV 349
VK+ + LD EA RG SVY+ DRV+PM P+ +SNGICSLN ++LT S MEID G V
Sbjct: 298 VKEGSALDGEALARGTSVYVTDRVVPMLPERLSNGICSLNPNLDRLTQSAIMEIDKHGRV 357
Query: 350 VNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRG 409
++Y++ ++VI + RMTY DVNAI+ GDK+L +Y I + M+ L KIL + RG
Sbjct: 358 LHYQITQTVINTSFRMTYSDVNAIIAGDKELTEQYDKIVPSIHYMVTLHKILEKMRERRG 417
Query: 410 SIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYR 469
+++F+ E K+++++ ++ ++L+ RG E++IE FM+AANE VAE L IYR
Sbjct: 418 ALNFDTSEAKILVNDKGFPMD-IVLRQRGLAERMIESFMLAANECVAEHFAKKNLPFIYR 476
Query: 470 THEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILRAL 528
HE+P EK+ + S FG I + Q+ +++ + + S ++ +LR++
Sbjct: 477 IHEEPKAEKLQKFMDYASIFGVSIQGTASKISQTALQDFMKKIEGQPGSDVLSMMLLRSM 536
Query: 529 KQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL--FSTIDNSIKPFKEADLDEI 586
+QARY+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ + ++ + EI
Sbjct: 537 QQARYSEYNHGHYGLAAQYYTHFTSPIRRYPDLLVHRLVREYDKANSEKVEHFAQIIPEI 596
Query: 587 AQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWD 646
A S ER A+ AE +K EYM++ VG+ +V+ + +F E IE
Sbjct: 597 ASQTSSLERRAIDAERVVEAMKKAEYMEEYVGQEFTGVVSSVVKFGLFVELPNTIEGLIH 656
Query: 647 ITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLT--LEIAVVPLD 698
+TT +Y F+E ++ S KVF +G + V + KAD T ++ A +P D
Sbjct: 657 MTTLPEFYQFNERTLSLQGEKSGKVFRVGQSIKVKVLKADKETGDIDFAYLPSD 710
>gi|156109782|gb|EDO11527.1| hypothetical protein BACOVA_02736 [Bacteroides ovatus ATCC 8483]
Length = 718
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 208/610 (34%), Positives = 358/610 (58%), Gaps = 25/610 (4%)
Query: 92 EGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAF 151
E IF+ + +A++ D V + K+K ++ AEG V++I+E +T VG LE +K++AF
Sbjct: 108 EPIFVAERNSAHAMNNDKVKITFYAKRK-NREAEGEVIEILERANDTFVGTLEVAKSYAF 166
Query: 152 VIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMI 210
++ + DI+IP K+ D V++T W D + P G++I ILG + ++ +
Sbjct: 167 LVTENRTLANDIFIPKDKLKGGKTGDKAIVKVTEWPDKAKNPIGQVIDILGQAGDNTTEM 226
Query: 211 DALIYREGLSEKFSNEAMQQTKEIIKEEI---DYSNRKNLTNLSIITIDGADAKDLDDAV 267
A++ GL + +A++ + I EI + + R++ ++ TID DAKD DDA+
Sbjct: 227 HAILAEFGLPYVYP-KAVETAADKIPAEISAEEIAKREDFRKVTTFTIDPKDAKDFDDAL 285
Query: 268 YVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICS 327
+ KL++G +++ V IADV+HYVK+ +++D EA R SVYLVDR +PM P+ + N ICS
Sbjct: 286 SIRKLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICS 345
Query: 328 LNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDI 387
L EEKL FS +I KG+V + + +VI S R TY++ I++ + D
Sbjct: 346 LRPNEEKLAFSVIFDITEKGEVRDSRIVHTVINSDRRFTYEEAQQIIE------TKEGDF 399
Query: 388 YEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDF 447
E + + ++K LR K+F+ G+I+F+ E+K +DE + V K+ + K++E+F
Sbjct: 400 KEEVLTLDTIAKALREKRFSAGAINFDRYEVKFEIDEKGKPIS-VYFKESKDANKLVEEF 458
Query: 448 MIAANETVAERIYWL---ELASI--YRTHEKPDREKIVTLNEILSKFGYKIPNFDNLH-- 500
M+ AN+TVAE+I + + A + YR H+ PD EK+ L++ +++FGYK+
Sbjct: 459 MLLANKTVAEKIGCVPKNKKAKVLPYRIHDLPDPEKLENLSQFIARFGYKVRTSGTKTDI 518
Query: 501 PKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSD 560
K +++ K+ L+ +RA+++ARY+ +I H+GLA +YTHFTSPIRR+ D
Sbjct: 519 SKSINHLLDDIHGKKEENLIETVSIRAMQKARYSTHNIGHYGLAFEYYTHFTSPIRRFPD 578
Query: 561 LMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGET 620
+MVHR++ +D + EA +++ H S E++A AE S++ K VE+M +R+G+
Sbjct: 579 MMVHRLVTKYMDGG-RSVSEAKYEDLCDHSSNMEQIAANAERASIKYKQVEFMSERLGQI 637
Query: 621 LNVMVTGFAQKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVFYLGDK 677
+ +++G + ++ E +E+ +C + +YY FDE+NYC+R +K++ LGD
Sbjct: 638 YDGVISGVTEWGLYVELNEN-KCEGLVPVRDLDDDYYEFDEKNYCLRGRRKNKIYSLGDA 696
Query: 678 VDVVLKKADL 687
+ V + +A+L
Sbjct: 697 ITVRVARANL 706
>gi|116627510|ref|YP_820129.1| Exoribonuclease R [Streptococcus thermophilus LMD-9]
gi|116100787|gb|ABJ65933.1| Exoribonuclease R [Streptococcus thermophilus LMD-9]
Length = 817
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 226/642 (35%), Positives = 363/642 (56%), Gaps = 18/642 (2%)
Query: 65 NSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKG- 123
N V+GVF KN F F+ +DSE+ +FI + + +A+DGDTV I + +G
Sbjct: 66 NQVTVEGVFHANKNGFGFLHVDDSEDD--MFIGRNDVGHAIDGDTVSAVIKKPADRLRGT 123
Query: 124 -AEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDL 177
AE RVV+I+E TVVG EK ++ + IYI +A + ++
Sbjct: 124 MAEARVVEIVERSLKTVVGKFILNDEKEPYVGYIKSKNQKIQQPIYIKKGPVA-LEGTEI 182
Query: 178 VAVEITFWGDDDRKP-EGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI-- 234
+ V+I + + G + I+G ++ + ++ + +F + M + + +
Sbjct: 183 IKVDIEKYPNRHHDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAVPD 242
Query: 235 IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKET 294
+ + D R +L TIDGADAKDLDDAV++++L NGNY+L V IADVS+YV + +
Sbjct: 243 VPSQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGS 302
Query: 295 VLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEV 354
L+ EA RG SV + DRV+PM P+ +SNGICSLN ++LT S MEI KG V+N+++
Sbjct: 303 ALNREAAARGTSVCVTDRVVPMLPERLSNGICSLNPNVDRLTLSAIMEITPKGKVINHKI 362
Query: 355 YKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFE 414
+SVIK+ RMTY DVN +L G+ + I ++ I + + M EL KIL + RG+++F+
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 415 LPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKP 474
E ++++++ V+ +++++RG E++IE FM+AANE VAE +L IYR HE+P
Sbjct: 423 TSEARILVNDKGMPVD-IVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEEP 481
Query: 475 DREKIVTLNEILSKFGYKIPNFDN-LHPKQFQEIIERSKDKETSMLVHKTILRALKQARY 533
EK+ + S FG +I N + Q+ + R + K + +++ +LR+++QARY
Sbjct: 482 KAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQARY 541
Query: 534 TVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK---EADLDEIAQHI 590
+ + H+GLA+ +YTHFTSPIRRY DL+VHR++ +N + + E + E+A
Sbjct: 542 SEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATSS 601
Query: 591 SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTA 650
S ER A+ AE +K EYM++ VG+ + +V + +F E +E ITT
Sbjct: 602 STLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTVEGLVHITTL 661
Query: 651 INYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+Y ++E ++ S K F +G + V L +AD T +I
Sbjct: 662 PEFYNYNERTMTLQGEKSGKTFRVGQPIRVKLIRADKETGDI 703
>gi|83815922|ref|YP_445650.1| ribonuclease R [Salinibacter ruber DSM 13855]
gi|83757316|gb|ABC45429.1| ribonuclease R [Salinibacter ruber DSM 13855]
Length = 666
Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats.
Identities = 227/643 (35%), Positives = 351/643 (54%), Gaps = 32/643 (4%)
Query: 71 GVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVK 130
GV + F FV D +E+ FI + AL GD V V + + DK E V++
Sbjct: 29 GVLQCHDKGFGFVQATDQDEE--FFIREANMGEALHGDLVRVAVAARAPEDKKRECEVLE 86
Query: 131 IIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDD 189
++E R VVG +FAFV P +D+Y+ + A + + V V I + D
Sbjct: 87 VVERRCTEVVGTFHHRSDFAFVEPDDQRILQDVYVAPDAFSGAKDGEKVMVSIDRFDDRK 146
Query: 190 RKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNL 247
PEG+I++++G S + + +L + F +E + + I + E + R++L
Sbjct: 147 ASPEGRILRVIGPSDDPNVRVLSLAMSMDVKADFPDEVEAEAESIPVKIPEDEIERRRDL 206
Query: 248 TNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSV 307
+ + TID DAKD DDAV+VE+L+NGNY++ V IADVSHYV+ +T +D EA RG SV
Sbjct: 207 RDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVGVHIADVSHYVEPDTAIDAEALERGTSV 266
Query: 308 YLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTY 367
YLVDR +PM P+++SN +CSL E+KL FS ME+ +GDVV+YE+ ++VI S R+TY
Sbjct: 267 YLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVVDYEICETVIHSKERLTY 326
Query: 368 KDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNN 427
++G +D+ Q L+K + ++ G+IDF E+ VILD+D
Sbjct: 327 DRAQDYIEGGYPDDKMAADVV----QANRLAKTITRRRMQEGAIDFGSDEVNVILDDDGT 382
Query: 428 KVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE-------------LASIYRTHEKP 474
++ K+R + ++IE+FM+ AN TVA+ I E L +YR H+ P
Sbjct: 383 PT-NIVRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRHRSNGTDEPLPFVYRVHDSP 441
Query: 475 DREKIVTLNEILSKFGYKIPNFD-NLHPKQFQEIIERSKDKETSMLVHKTILRALKQARY 533
D E+I L E + F +++P D N +I+ + + ++ + LRA+ +A Y
Sbjct: 442 DSEEIQQLAEYVRVFDHELPLTDGNARSSDLGALIDEVQGQPEEQVIVRAALRAMSKAEY 501
Query: 534 TVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIA---QHI 590
V +I H+GL +Y+HFTSPIRRY DLMVHR+L K AD++++A +H
Sbjct: 502 AVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLL----KRYAKGGSPADIEDLAARCEHC 557
Query: 591 SKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECSWDITT 649
S+ ER A +AE ESV++K VEY++ VGE + +V+G + +F E TD +E +
Sbjct: 558 SEQERNAEEAERESVKLKQVEYVKNHVGEEFDGVVSGVTKFGVFVEITDLLVEGLVHVRE 617
Query: 650 AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+YY +DE Y +R ++ + GD V V + A + EI
Sbjct: 618 MNDYYVYDESTYTLRGENNGTSYRPGDSVRVEVASASVEDREI 660
>gi|104783863|ref|YP_610361.1| exoribonuclease R [Pseudomonas entomophila L48]
gi|95112850|emb|CAK17578.1| exoribonuclease R [Pseudomonas]
Length = 857
Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats.
Identities = 211/644 (32%), Positives = 343/644 (53%), Gaps = 37/644 (5%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D E +F+ + DGD L ++ + + EG +V++I
Sbjct: 97 RDGFGFLIPDDGSED--LFLSPAQMRLVFDGDRGLARVSGVDRRGR-REGVLVEVISRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
+VVG + +V P +++ + + A V+++IT W +P+G
Sbjct: 154 ESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNGGAKIGQFVSIKITHWPTPRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSII 253
+++++G+ ID + + + E +++ ++ E E D R +L +L +
Sbjct: 214 VVEVIGNYMAPGMEIDIALRSYDIPHVWPQEVIKEARKFRSEVEEKDKEKRIDLRHLPFV 273
Query: 254 TIDGADAKDLDDAVYVE-----KLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVY 308
TIDG DA+D DDAVY E +L +G ++L VAIADVS YV+ + LD+EA+ RGNSVY
Sbjct: 274 TIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVY 333
Query: 309 LVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYK 368
+RV+PM P+E+SNG+CSLN ++L CEM ++ G +V+Y+ Y+ +I S R+TY
Sbjct: 334 FPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGIIHSHARLTYN 393
Query: 369 DVNAILDG-----DKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILD 423
V+++L+ K L EY ++ LK + L K+L + TRG+IDFE E ++I
Sbjct: 394 KVSSMLEHARTREGKALREEYKEVLPDLKNLYNLYKVLVDARHTRGAIDFETQETRIIFG 453
Query: 424 EDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLN 483
ED K++++ R + K+IE+ M+AAN AE + + S+YR H+ P E++ L
Sbjct: 454 ED-RKIDEIRPTVRNDAHKLIEECMLAANVATAEFLQKHNVPSLYRVHDGPPPERLEKLR 512
Query: 484 EILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGL 543
L + G + + PK +Q+++ + L+ +LR+L QA Y+VE+ HFGL
Sbjct: 513 AFLGELGLTLHKGKDPSPKDYQQLLASIAGRPDFHLIQTVMLRSLSQAVYSVENNGHFGL 572
Query: 544 ASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEADLDE 585
YTHFTSPIRRY DL+VHR + S I + I P+ E LD+
Sbjct: 573 NYEAYTHFTSPIRRYPDLLVHRAIRSVIRSKVDTPHVKRAGAMSIPKARIYPYDENTLDQ 632
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECS 644
+ + S TER A +A + V EYM+ RVGET ++T +F E TD ++E
Sbjct: 633 MGEQCSMTERRADEATRDVVNWLKCEYMRDRVGETFPGVITAVTGFGLFIELTDIYVEGL 692
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
++ +YY FD ++ + S + F LGD V+V + + DL
Sbjct: 693 VHVSALPGDYYHFDPVHHRLSGERSGRSFRLGDTVEVKVMRVDL 736
>gi|77411061|ref|ZP_00787415.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae CJB111]
gi|77162884|gb|EAO73841.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae CJB111]
Length = 801
Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats.
Identities = 237/673 (35%), Positives = 370/673 (54%), Gaps = 42/673 (6%)
Query: 44 LSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNN 103
L + D+G L + KK + V+G+FR K F F+ + E+ +FI K +
Sbjct: 48 LRFDDNGSLSLRKKEA---KKKEITVRGLFRANKAGFGFLSIDQDEDD--MFIGKNDIAY 102
Query: 104 ALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPT 155
A+DGDTV E KK +D+ AE RVV I+E T+VG E+ K ++
Sbjct: 103 AIDGDTV--EAVVKKPADRLNGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSK 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNSK 207
+ IYI + D +++ V+I D+ P + I+G +
Sbjct: 161 NQKINQKIYIRKEPVV-LDGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDVG 213
Query: 208 NMIDALIYREGLSEKFSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDD 265
+ ++ + +F + + + I E D R +L TIDGADAKDLDD
Sbjct: 214 IDVLEVLESMDIVSEFPEDVIAEANAIPDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDD 273
Query: 266 AVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGI 325
AV+++ L+NG+++L V IADVS+YV + + L+ EA RG SVY+ DRV+PM P+ +SNGI
Sbjct: 274 AVHIKLLDNGHFELGVHIADVSYYVTEGSALNREALSRGTSVYVTDRVVPMLPERLSNGI 333
Query: 326 CSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYS 385
CSLN ++LT SC MEID G VVN+++ +SVI + +RMTY VN I+ GD+++ +EY
Sbjct: 334 CSLNPNLDRLTQSCIMEIDQNGRVVNHQITQSVINTTYRMTYTAVNDIIAGDEEICSEYE 393
Query: 386 DIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIE 445
I ++ M+ L IL + RG+++F+ E K+++++ V+ +++++RG E++IE
Sbjct: 394 SIVPSVQHMVTLHHILETMRTRRGALNFDTSEAKIMVNDKGMPVD-IVIRNRGIAERMIE 452
Query: 446 DFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQF 504
FM+AANETVAE L+L IYR HE+P EK+ + S FG I +
Sbjct: 453 SFMLAANETVAEHYARLKLPFIYRIHEEPKAEKLQKFIDYASIFGVHIQGTATKITQPAL 512
Query: 505 QEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVH 564
Q+ +++ + + S ++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VH
Sbjct: 513 QDFMKKVQGQPGSEVLSMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVH 572
Query: 565 RVLFSTIDNSIKPFKEAD-----LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGE 619
R++ D K +AD + EIA S ER A+ AE +K EYM++ +GE
Sbjct: 573 RMIR---DYGDKAMDKADHFANLIPEIATQTSSLERRAIDAERIVEAMKKAEYMEEYIGE 629
Query: 620 TLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVD 679
+V + +F E IE +TT YY F+E ++ S KVF +G ++
Sbjct: 630 EFEGVVASVVKFGMFVELPNTIEGLVHVTTLPEYYHFNERTLTLQGEKSGKVFRVGQQIK 689
Query: 680 VVLKKADLLTLEI 692
V L ++D T +I
Sbjct: 690 VKLIRSDKETGDI 702
>gi|30248367|ref|NP_840437.1| rnr; exoribonuclease RNAse R (vacB protein) [Nitrosomonas europaea
ATCC 19718]
gi|30138253|emb|CAD84261.1| rnr; exoribonuclease RNAse R (vacB protein) [Nitrosomonas europaea
ATCC 19718]
Length = 733
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 217/659 (32%), Positives = 358/659 (54%), Gaps = 14/659 (2%)
Query: 47 IDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALD 106
I G +I ++K + + E VKGV + + F F+ +D +F+ +E + L
Sbjct: 75 IREGQIICNRKGDICVTEKLELVKGVVQGHSDGFGFLIPDDGSTD--LFLTPKEMHKVLH 132
Query: 107 GDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIP 165
GD V+ +T E R+++++E +VG L + FV+ +DI IP
Sbjct: 133 GDRVIARVTNIVDRRGRRECRIIRVLESVNTQLVGRLFEEHGIFFVVAEDKRINQDILIP 192
Query: 166 NSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSN 225
I +A +V I + +P G II+ILG I+ + + L +F
Sbjct: 193 KENIMDAHAGQIVVARIIQQPREHAQPIGHIIEILGDYAAPGMEIEIALRKFDLPHEFPP 252
Query: 226 E--AMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAI 283
E +++ ++++K+ D + R+++ +L ++TID A+D DDAV+ + E +Y+L VAI
Sbjct: 253 EVISVKFPQKVLKK--DLTKREDIRHLPLVTIDSETARDFDDAVHCCQ-EGKDYRLFVAI 309
Query: 284 ADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEI 343
ADVSHYV+ + LD EA +RGNSVY RV+PM P+ +SNG+CSLN + ++L CEM
Sbjct: 310 ADVSHYVRDQDALDKEAFNRGNSVYFPRRVIPMLPEVLSNGLCSLNPQVDRLCMVCEMLW 369
Query: 344 DLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLI-NEYSDIYEMLKQMLELSKILR 402
+G++V Y Y +V+ S R+TY V +LD K + E+ + ++ + L K+L
Sbjct: 370 TARGELVEYRFYPAVMLSHARLTYNIVAELLDQPKGAVAKEHRQLLPHIQLLYRLFKVLH 429
Query: 403 IKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWL 462
+ RG+IDFE E +++ + D K+E++ R + ++IE+ M+AAN A+ +
Sbjct: 430 KSRVKRGAIDFETIETEMVFN-DQGKIEQIYPVKRNDAHRLIEECMLAANVCAADFLQKH 488
Query: 463 ELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHK 522
E +YR HE P EK+V L + L +FG ++ + + + I++R K++ + L+
Sbjct: 489 EQPVLYRIHEGPTDEKLVALRDFLKEFGLQLRGGEKPQARDYARILDRIKERADAQLLQT 548
Query: 523 TILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEAD 582
+LR+L QA Y ++I HFGLA YTHFTSPIRRY DL+VHR + + + + K ++ D
Sbjct: 549 VMLRSLSQAMYNPDNIGHFGLAYEMYTHFTSPIRRYPDLLVHRAIKAVLAD--KQYEPGD 606
Query: 583 LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HI 641
EI +H S+TER A +A E YMQ ++G+ +VTG +F DE ++
Sbjct: 607 WHEIGKHCSQTERRADEATREVQSWLKCFYMQDKIGDCFGGVVTGVTAFGLFVTLDEIYV 666
Query: 642 ECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
E I+ +Y+ +D + +R S F LGD++ V L + DL T +I + D+
Sbjct: 667 EGLVYISELPSDYFHYDAVKHVLRGERSGISFRLGDRLQVKLVRVDLATRKIDFILADN 725
>gi|95928777|ref|ZP_01311523.1| Ribonuclease R [Desulfuromonas acetoxidans DSM 684]
gi|95135122|gb|EAT16775.1| Ribonuclease R [Desulfuromonas acetoxidans DSM 684]
Length = 722
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 205/612 (33%), Positives = 333/612 (54%), Gaps = 31/612 (5%)
Query: 87 DSEEKEGIFIPKEEFNNALDGDTVL-VEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEK 145
D ++ +++ A+DGD V+ +E+ E + + EG +V++++ + T++G+ EK
Sbjct: 85 DCDDGHELYVATFRLGGAMDGDEVMALELPESR--GRRPEGWIVEVVKRSRETLLGVCEK 142
Query: 146 SKNFAFVIPTGSFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE------GKIIKI 199
+ V+ G + + + + D LV + DR P G I+ +
Sbjct: 143 NSRQGGVVFRSEQGGLTFDVDDR--SRDVSLLVGQVVVL--RIDRYPAMHENGLGHIVDV 198
Query: 200 LGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEID---YSNRKNLTNLSIITID 256
LG + + + I + ++R G+ +FS A++Q I E+ + R +L +L +TID
Sbjct: 199 LGHAGSPEVDILSTVHRLGIPNRFS-AAVEQAASAIAAEVPPEVVAARADLCSLPFVTID 257
Query: 257 GADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPM 316
GADA+D DDAV + + E+G+++L VAIADV +YV++ + LDLEAR RG SVY R LPM
Sbjct: 258 GADARDFDDAVCLARSEDGHWRLHVAIADVGYYVEEGSALDLEARERGTSVYFPSRCLPM 317
Query: 317 FPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDG 376
P+ +SNGICSL ++E+L E+ D G +N+E Y++ I+S R+ Y+ V +LDG
Sbjct: 318 LPQALSNGICSLQPEKERLVVVAEITFDDLGRRLNFEAYRATIRSRQRLIYEQVQQVLDG 377
Query: 377 DKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKD 436
I + EML QM L++ LR ++ RG+IDF+LPE VI D D ++ ++ +
Sbjct: 378 QVPEIPVSEPLTEMLHQMQHLAQSLRHRRLHRGAIDFDLPEANVIFD-DEGRIVRIGRRS 436
Query: 437 RGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-N 495
R + ++IE+FM+ ANE VAE I ++R HE PD + + + L+ I +
Sbjct: 437 RLDSHRLIEEFMLCANEAVAEFILSRRETGMFRIHESPDIRSMQSFQQFLATLNLGITLD 496
Query: 496 FDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPI 555
D + ++ + ++ + V++ +LR++KQARY E+ HFGLAS Y HFTSPI
Sbjct: 497 EDGISARELRRLLHEVEGTSLEFSVNRILLRSMKQARYDAENSGHFGLASDAYCHFTSPI 556
Query: 556 RRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQK 615
RRY DL+VHR+L +D + L +A + ER AM+AE + V ++ ++M+
Sbjct: 557 RRYPDLLVHRLLLQILDGRADWEADEPLPRLADAATAAERRAMEAERDIVDLRKCQFMED 616
Query: 616 RVGETLNVMVTGFAQKKIFFETDE-------HIECSWDITTAINYYAFDEENYCMRDTDS 668
++G + +T F E DE HI T + +YY FDEE +
Sbjct: 617 KIGTRYSGYITSVNAFGFFVELDEFFVEGLVHIR-----TLSDDYYVFDEERLILVGQAR 671
Query: 669 DKVFYLGDKVDV 680
K F +GD V+V
Sbjct: 672 RKTFQVGDTVEV 683
>gi|77405198|ref|ZP_00782296.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae H36B]
gi|77176200|gb|EAO78971.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae H36B]
Length = 801
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 237/673 (35%), Positives = 370/673 (54%), Gaps = 42/673 (6%)
Query: 44 LSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNN 103
L + D+G L + KK + V+G+FR K F F+ + E+ +FI K +
Sbjct: 48 LRFDDNGSLSLRKKEA---KKKEITVRGLFRANKAGFGFLSIDQDEDD--MFIGKNDIAY 102
Query: 104 ALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPT 155
A+DGDTV E KK +D+ AE RVV I+E T+VG E+ K ++
Sbjct: 103 AIDGDTV--EAVVKKPADRLKGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSK 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNSK 207
+ IYI + D +++ V+I D+ P + I+G +
Sbjct: 161 NQKINQKIYIRKEPVV-LDGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDVG 213
Query: 208 NMIDALIYREGLSEKFSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDD 265
+ ++ + +F + + + I E D R +L TIDGADAKDLDD
Sbjct: 214 IDVLEVLESMDIVSEFPEDVIAEANAIPDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDD 273
Query: 266 AVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGI 325
AV+++ L+NG+++L V IADVS+YV + + L+ EA RG SVY+ DRV+PM P+ +SNGI
Sbjct: 274 AVHIKLLDNGHFELGVHIADVSYYVTEGSALNREALSRGTSVYVTDRVVPMLPERLSNGI 333
Query: 326 CSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYS 385
CSLN ++LT SC MEID G VVN+++ +SVI + +RMTY VN I+ GD+++ +EY
Sbjct: 334 CSLNPNLDRLTQSCIMEIDQNGKVVNHQITQSVINTTYRMTYTAVNDIIAGDEEICSEYE 393
Query: 386 DIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIE 445
I ++ M+ L IL + RG+++F+ E K+++++ V+ +++++RG E++IE
Sbjct: 394 SIVPSVQHMVTLHHILETMRTRRGALNFDTSEAKIMVNDKGMPVD-IVIRNRGIAERMIE 452
Query: 446 DFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQF 504
FM+AANETVAE L+L IYR HE+P EK+ + S FG I +
Sbjct: 453 SFMLAANETVAEHYARLKLPFIYRIHEEPKAEKLQKFIDYASIFGVHIQGTATKITQPAL 512
Query: 505 QEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVH 564
Q+ +++ + + S ++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VH
Sbjct: 513 QDFMKKVQGQPGSEVLSMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVH 572
Query: 565 RVLFSTIDNSIKPFKEAD-----LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGE 619
R++ D K +AD + EIA S ER A+ AE +K EYM++ +GE
Sbjct: 573 RMIR---DYGDKAMDKADHFANLIPEIATQTSSLERRAIDAERIVEAMKKAEYMEEYIGE 629
Query: 620 TLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVD 679
+V + +F E IE +TT YY F+E ++ S KVF +G ++
Sbjct: 630 EFEGVVASVVKFGMFVELPNTIEGLVHVTTLPEYYHFNERTLTLQGEKSGKVFRVGQQIK 689
Query: 680 VVLKKADLLTLEI 692
V L ++D T +I
Sbjct: 690 VKLIRSDKETGDI 702
>gi|108758783|ref|YP_632385.1| ribonuclease R [Myxococcus xanthus DK 1622]
gi|108462663|gb|ABF87848.1| ribonuclease R [Myxococcus xanthus DK 1622]
Length = 1182
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 213/607 (35%), Positives = 336/607 (55%), Gaps = 34/607 (5%)
Query: 56 KKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEIT 115
++ R S E G ++G+ + ++ F FV S E + +F+P E ALD D V+V ++
Sbjct: 156 RRGRFSEVEEDGLLEGILHVHRDGFGFVHPL-SGEGDNVFLPPHEAQRALDNDRVVVAVS 214
Query: 116 EKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT-GSFGKDIYIPNSKIANADN 174
+ EGR+V++++ R+ VG +A V PT S I +P +++A
Sbjct: 215 GRPPR---LEGRIVRVVQRRRELAVGTYVVKGRYAVVYPTDSSLPGPIRVPLTQMAR--E 269
Query: 175 KDLVAVEITFWG---DDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQT 231
DLV V++ D DR G++ LG + + Y +G S++F E M +
Sbjct: 270 GDLVKVQLGIGAQMLDPDRGLHGEVAGSLGKPGTPSAEVLGVAYSQGFSDEFPPEVMAEA 329
Query: 232 KE----IIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVS 287
+ +EE+ +R++L + +ITIDG DA+D DDAV VE +G ++L+VAIADV+
Sbjct: 330 DRYAVTVTEEEVRGEHRRDLRAIPLITIDGEDARDFDDAVCVEDRADG-WRLVVAIADVT 388
Query: 288 HYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKG 347
HYV + + L+ EA R SVYL DRVLPM P+ +SNGICSL E++L +M D +G
Sbjct: 389 HYVWEGSALNAEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMTFDRRG 448
Query: 348 DVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLI--NEYSDIYEMLKQMLELSKILRIKK 405
+Y++Y +V++SV R TY +V +LDG KD+ N + +E +++ L++ L +
Sbjct: 449 HRRSYDLYPAVMRSVARCTYNEVQDVLDG-KDVPHRNAHKPHFE---RLMSLARALMKMR 504
Query: 406 FTRGSIDFELPELKVILDEDN--NKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE 463
RG+IDF+LPE KV+LDED +++K ++R + ++IE+ M+AANE VA
Sbjct: 505 KERGAIDFDLPEHKVVLDEDGLPARMDK---RERKDSHRLIEECMLAANEAVATFFQNEG 561
Query: 464 LASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKT 523
L ++YR H +PD EK+ T + +G+K+ D + K+ + + + +++
Sbjct: 562 LPTVYRFHGEPDPEKLATFAALAEAYGFKMRVEDGVSSKELDAFVSQLQGHPEQRALNQL 621
Query: 524 ILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-------TIDNSIK 576
+LR++ QA YT + H+GLA+ HY HFTSPIRRY DL+VHR+L + S+
Sbjct: 622 LLRSMMQAVYTSSRVGHYGLAAEHYLHFTSPIRRYPDLLVHRLLKAHWARKGRKPSQSML 681
Query: 577 PFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE 636
+E L+++A S+ ER AM+ E E V M+ RVGE V F E
Sbjct: 682 EREEDQLEDMAAQCSERERAAMQVEREVVSFYACLLMKDRVGEEFAATVAAITDFGFFVE 741
Query: 637 TDE-HIE 642
DE H+E
Sbjct: 742 LDEVHVE 748
>gi|118139519|ref|YP_391756.2| Ribonuclease R [Thiomicrospira crunogena XCL-2]
gi|110744176|gb|ABB42082.2| Ribonuclease R [Thiomicrospira crunogena XCL-2]
Length = 818
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 223/691 (32%), Positives = 371/691 (53%), Gaps = 16/691 (2%)
Query: 8 EKIKELL-KDVKYLTLDQITSFLEWSPKKKKDNKIIIL-SWIDSGDLIMDKKHRLSLPEN 65
E I ELL K+ K L + QI + L+ ++ + L + + G ++ +++ L +
Sbjct: 60 EFIIELLEKEQKPLRIKQIATILDIDDDERFEALSRRLKAMVRDGQILRNRRGAFGLIQK 119
Query: 66 SGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAE 125
+KG F FV E E +F+ E + GD V+ + + + E
Sbjct: 120 MDLIKGKVIGHPGGFGFVQPE--EGGGDLFLGDREMHKVFHGDKVIASVIGVDRKGR-RE 176
Query: 126 GRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITF 184
G +V+IIEH T++G L +V P + +DI+IP + +A+ +V VE+
Sbjct: 177 GMIVEIIEHANQTILGRLHMEDGLGWVQPNNNRIAQDIFIPQDGLLDAEEGQIVMVEVIH 236
Query: 185 WGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYS 242
GKII+++G ID+ I+ + ++ E + Q + I E + D
Sbjct: 237 QPTKRSSAIGKIIEVVGDYLAPGMEIDSAIHAYDIPNEWPQELLDQLEAIPDEVTQEDKE 296
Query: 243 NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARH 302
RK+L +L ++TIDGAD+KD DDAV+ ++ +NG ++L+VAIADVSHYVK+ T LD EA
Sbjct: 297 GRKDLRSLPLVTIDGADSKDFDDAVFAKRRKNG-WRLVVAIADVSHYVKEGTPLDKEAYE 355
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RGNSVY +V+PM P+++SN +CSLN ++L C+M ID G + + Y +V+ S
Sbjct: 356 RGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVCDMSIDNDGKLERTQFYDAVMNSK 415
Query: 363 HRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
R+TY V+ +L D + + D+ ++ + +L +IL+ + RG+++F+ E +++
Sbjct: 416 ARLTYDQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEILKGARSERGALEFDTTETRIV 475
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
DE + K+EK++ R E K+IE+ M+ AN A + W ++ +YR HEKP E++
Sbjct: 476 FDE-HRKIEKIVPVVRNEAHKLIEECMLMANVATARYLKWHKIPMLYRVHEKPSEERLKN 534
Query: 482 LNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHF 541
L L FG + D + I E K + LV +LR++ QA Y +++ HF
Sbjct: 535 LRTFLGDFGLTLEGGDEPDANDYATITEAVKGQPHEHLVGTVLLRSMNQAVYQPDNLGHF 594
Query: 542 GLASSHYTHFTSPIRRYSDLMVHRVL-FSTIDNSIKPFK--EADLDEIAQHISKTERVAM 598
GL +Y HFTSPIRRY DL++HR + F+ + FK E D+ + +H S TER A
Sbjct: 595 GLNYEYYAHFTSPIRRYPDLLIHRAIRFAWTKQDVSKFKYSEKDMKALGEHCSGTERRAD 654
Query: 599 KAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIECSWDITT-AINYYAF 656
+A ++V E++ R+GE + +VT +F E + ++E IT +Y+ +
Sbjct: 655 EATRDAVTFLKCEFLSHRLGEEYDAVVTAATNFGLFVELEPLYVEGLVHITELGEDYFHY 714
Query: 657 DEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D +C++ + KV+ LGDK+ V + + +L
Sbjct: 715 DASRHCLKGERTGKVYRLGDKLRVQVAQVNL 745
>gi|67157137|ref|ZP_00418499.1| VacB and RNase II family 3'-5' exoribonuclease [Azotobacter
vinelandii AvOP]
gi|67085814|gb|EAM05286.1| VacB and RNase II family 3'-5' exoribonuclease [Azotobacter
vinelandii AvOP]
Length = 861
Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats.
Identities = 212/644 (32%), Positives = 339/644 (52%), Gaps = 37/644 (5%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D + +F+ + DGD L ++ + + EG +V+++
Sbjct: 97 RDGFGFLIPDDGSDD--LFLSPMQMRLLFDGDRALARVSGFDRRGR-REGAIVEVVSRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
++VG + FVIP +++ + + ANA V + IT W +P+G
Sbjct: 154 ESIVGRYYEESGIGFVIPDNPKIQQEVLVTPGRTANASVSQFVEIRITHWPTLRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSII 253
II+++G+ I+ + + + +++++++ E E D R +L +L +
Sbjct: 214 IIEVIGNYMAPGMEIEVALRSYDIPHVWPEAVLKESRKLKPEVDEKDKLKRIDLRHLPFV 273
Query: 254 TIDGADAKDLDDAVYVEKLE----NGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYL 309
TIDG DA+D DDAVY EK G Y+L VAIADVSHYV+ + LD EA RGNSVY
Sbjct: 274 TIDGEDARDFDDAVYCEKSLLAPFAGGYRLYVAIADVSHYVRVGSALDEEASRRGNSVYF 333
Query: 310 VDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKD 369
+RV+PM P+E+SNG+CSLN + ++L CEM + G + +Y+ Y++VI S R+TY
Sbjct: 334 PERVVPMLPEELSNGLCSLNPQVDRLAMVCEMTLSRAGKMTDYQFYEAVIHSHARLTYNR 393
Query: 370 VNAILDGDKD-----LINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDE 424
V+A+L+ K L + Y+ + LKQ+ L K+L + RG+IDFE E +++
Sbjct: 394 VSAMLEQPKSPEGKRLRSIYAGVLPHLKQLHSLYKVLVKARQARGAIDFETQETRIVFGT 453
Query: 425 DNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNE 484
K+ ++L +R + K+IE+ M+ AN A + EL +YR H+ P E++ L
Sbjct: 454 -GRKIAEILPTERNDAHKLIEECMLCANVATAAFLQKHELPGLYRVHDGPPAERLEKLKA 512
Query: 485 ILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGL 543
L + G + + D PK +Q ++E + + L+ +LR+L QA Y+ E+ HFGL
Sbjct: 513 FLGELGLSLHRSKDGPTPKDYQMLLESIQGRADFHLIQTVMLRSLSQAVYSAENRGHFGL 572
Query: 544 ASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEADLDE 585
YTHFTSPIRRY DL+VHR + S I + I P+ EA L++
Sbjct: 573 NYEAYTHFTSPIRRYPDLLVHRAIRSVIRSKRETPHVRRAGATSMPKARIYPYDEAALEQ 632
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECS 644
+ + S TER A +A + V E+MQ RVGE +++ IF E D ++E
Sbjct: 633 LGESCSMTERRADEATRDVVNWLKCEFMQDRVGERFEGVISAATGFGIFVELKDIYVEGL 692
Query: 645 WDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+T +YY FD ++C+ S + F LGD V V + + DL
Sbjct: 693 VHVTALPADYYHFDPVHHCLSGERSGRSFRLGDSVVVQVMRVDL 736
>gi|22537625|ref|NP_688476.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae 2603V/R]
gi|76787265|ref|YP_330119.1| ribonuclease R [Streptococcus agalactiae A909]
gi|76799427|ref|ZP_00781576.1| ribonuclease R [Streptococcus agalactiae 18RS21]
gi|22534511|gb|AAN00349.1|AE014260_5 exoribonuclease, VacB/Rnb family [Streptococcus agalactiae 2603V/R]
gi|76562322|gb|ABA44906.1| ribonuclease R [Streptococcus agalactiae A909]
gi|76585222|gb|EAO61831.1| ribonuclease R [Streptococcus agalactiae 18RS21]
Length = 801
Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats.
Identities = 237/673 (35%), Positives = 370/673 (54%), Gaps = 42/673 (6%)
Query: 44 LSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNN 103
L + D+G L + KK + V+G+FR K F F+ + E+ +FI K +
Sbjct: 48 LRFDDNGSLSLQKKEA---KKKEITVRGLFRANKAGFGFLSIDQDEDD--MFIGKNDIAY 102
Query: 104 ALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPT 155
A+DGDTV E KK +D+ AE RVV I+E T+VG E+ K ++
Sbjct: 103 AIDGDTV--EAVVKKPADRLNGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSK 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNSK 207
+ IYI + D +++ V+I D+ P + I+G +
Sbjct: 161 NQKINQKIYIRKEPVV-LDGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDVG 213
Query: 208 NMIDALIYREGLSEKFSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDD 265
+ ++ + +F + + + I E D R +L TIDGADAKDLDD
Sbjct: 214 IDVLEVLESMDIVSEFPEDVIAEANAIPDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDD 273
Query: 266 AVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGI 325
AV+++ L+NG+++L V IADVS+YV + + L+ EA RG SVY+ DRV+PM P+ +SNGI
Sbjct: 274 AVHIKLLDNGHFELGVHIADVSYYVTEGSALNREALSRGTSVYVTDRVVPMLPERLSNGI 333
Query: 326 CSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYS 385
CSLN ++LT SC MEID G VVN+++ +SVI + +RMTY VN I+ GD+++ +EY
Sbjct: 334 CSLNPNLDRLTQSCIMEIDQNGRVVNHQITQSVINTTYRMTYTAVNDIIAGDEEICSEYE 393
Query: 386 DIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIE 445
I ++ M+ L L + RG+++F+ E K+++++ V+ +++++RG E++IE
Sbjct: 394 SIVSSVQHMVTLHHTLEAMRTRRGALNFDTSEAKIMVNDKGMPVD-IVIRNRGIAERMIE 452
Query: 446 DFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQF 504
FM+AANETVAE L+L IYR HE+P EK+ + S FG +I +
Sbjct: 453 SFMLAANETVAEHYARLKLPFIYRIHEEPKAEKLQKFIDYASVFGVQIQGTATKITQSAL 512
Query: 505 QEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVH 564
Q+ +++ + + S ++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VH
Sbjct: 513 QDFMKKVQGQPGSEVLSMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVH 572
Query: 565 RVLFSTIDNSIKPFKEAD-----LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGE 619
R++ D K +AD + EIA S ER A+ AE +K EYM++ VGE
Sbjct: 573 RMIRDYDD---KAMDKADHFANLIPEIATQTSSLERRAIDAERIVEAMKKAEYMEEYVGE 629
Query: 620 TLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVD 679
+V + +F E IE +TT YY F+E ++ S KVF +G ++
Sbjct: 630 EFEGVVASVVKFGMFVELPNTIEGLIHVTTLPEYYHFNERTLTLQGEKSGKVFRVGQQIK 689
Query: 680 VVLKKADLLTLEI 692
V L ++D T +I
Sbjct: 690 VKLIRSDKETGDI 702
>gi|146305678|ref|YP_001186143.1| ribonuclease R [Pseudomonas mendocina ymp]
gi|145573879|gb|ABP83411.1| ribonuclease R [Pseudomonas mendocina ymp]
Length = 828
Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats.
Identities = 213/648 (32%), Positives = 342/648 (52%), Gaps = 41/648 (6%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D + +F+ + DGD LV + + + EG +V++I
Sbjct: 97 RDGFGFLVPDDGSDD--LFLSPAQMRLVFDGDRALVRVAGLDRRGR-REGGIVEVISRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
++VG + FV+ +++ + + A A V ++IT W +P+G
Sbjct: 154 ESIVGRYYEESGIGFVVADNPKIQQEVLVTPGRTAGARIGQFVEIKITHWPTQRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSII 253
I++++G+ ID + + + +++ +++ E E D R +L +L +
Sbjct: 214 IVEVIGNYMAPGMEIDVALRSYDIPHVWPEAVIKEARKLKPEVEEKDKEKRIDLRHLPFV 273
Query: 254 TIDGADAKDLDDAVYVEK------LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSV 307
TIDG DA+D DDAVY EK L +G +KL VAIADVSHYVK + LD EA RGNSV
Sbjct: 274 TIDGEDARDFDDAVYCEKNSSRWKLFSGGWKLYVAIADVSHYVKAGSALDAEATERGNSV 333
Query: 308 YLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTY 367
Y +RV+PM P+E+SNG+CSLN ++L CEM + G +V+Y+ Y++VI S R+TY
Sbjct: 334 YFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMSKSGQMVDYKFYEAVIHSHARLTY 393
Query: 368 KDVNAILDG-----DKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVIL 422
V+ +L+ K L +EY ++ L Q+ L ++L + RG+IDFE E ++I
Sbjct: 394 NKVSLMLEDPKSSEGKSLRSEYKEVLPHLNQLYALYQVLVAARHERGAIDFETQETRIIF 453
Query: 423 DEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTL 482
D K++++ R + K+IE+ M+AAN A + ++ S+YR H+ P E++ L
Sbjct: 454 GTD-RKIDEIRPTQRNDAHKLIEECMLAANVATARFMQDHDIPSLYRVHDGPPPERLEKL 512
Query: 483 NEILSKFGYKI---PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIS 539
L + G + + D PK +Q ++E +++ L+ +LR+L QA Y+ ++
Sbjct: 513 KAFLGELGLSLQRGKSKDGPTPKDYQRLLESIRERPDFHLIQTVMLRSLSQAVYSAQNEG 572
Query: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEA 581
HFGL YTHFTSPIRRY DL+VHR + S I + I P+ EA
Sbjct: 573 HFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVIRSKRETKHVERAGAASMPKARIYPYDEA 632
Query: 582 DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEH 640
L+++ + S TER A +A + V E+MQ RVGET ++T IF E D +
Sbjct: 633 TLEKLGEQCSMTERRADEATRDVVNWLKCEFMQDRVGETFAGVITAVTGFGIFVELRDIY 692
Query: 641 IECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+E +T +YY FD ++ + S + F LGD V+V + + DL
Sbjct: 693 VEGLVHVTALPADYYHFDPVHHRLSGERSGRSFRLGDSVEVKVMRVDL 740
>gi|71903068|ref|YP_279871.1| exoribonuclease II [Streptococcus pyogenes MGAS6180]
gi|71802163|gb|AAX71516.1| exoribonuclease II [Streptococcus pyogenes MGAS6180]
Length = 777
Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats.
Identities = 238/671 (35%), Positives = 374/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNVDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E KVI+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVALHRILEAMRSKRGALNFDTQEAKVIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKAEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ +S + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYSQPSQEKRDHFTQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVASVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|94268174|ref|ZP_01291109.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R [delta
proteobacterium MLMS-1]
gi|93451701|gb|EAT02476.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R [delta
proteobacterium MLMS-1]
Length = 782
Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats.
Identities = 217/666 (32%), Positives = 353/666 (53%), Gaps = 30/666 (4%)
Query: 44 LSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEK----EGIFIPKE 99
L +D ++ ++ R SL + + F F +S + + IF+P +
Sbjct: 113 LEELDRRGWLVSRRSRYSLAPDLEICPAELSMHPRGFGFAMLSESTDAARYHKDIFLPPD 172
Query: 100 EFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-- 157
+A+ GD +LV + K ++DK AEGRV++++E ++VGI V P
Sbjct: 173 AMGSAVHGDKILVLVV-KGRADK-AEGRVLRVLERGITSLVGIYVSGATSGLVTPEDERL 230
Query: 158 -FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYR 216
F + P S A N + V VEI+ + + PEG+I+++LG + I+ I
Sbjct: 231 PFKVVVRRPQS--GGARNGEAVVVEISRFKEQG-NPEGRIVEVLGDPAAAPVQIEIAIRS 287
Query: 217 EGLSEKFSNEAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGN 276
L +F+ + + + + ++R +L + +TID A+D DDAV VE L G
Sbjct: 288 HQLPHRFAPALLAEVEAYSDKIEPQASRLDLREIPHVTIDSESARDYDDAVAVEPLAKGG 347
Query: 277 YKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLT 336
+L V+IADVSHYV+ + LD EA RG SVY RV+PM P+ +SN +CSL +++ T
Sbjct: 348 LRLYVSIADVSHYVQPGSALDDEAYARGTSVYFPGRVVPMLPERLSNDLCSLVPDQDRYT 407
Query: 337 FSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQML 395
S ++ D KG + KS+I+S HR+TY V A+L D + +L Y+DI L+Q+
Sbjct: 408 MSAIIDFDGKGQRKSARFGKSLIRSRHRLTYTKVKAMLEDREPELCRRYADILPDLEQIA 467
Query: 396 ELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETV 455
+L+ L + RGSI FE+PE ++LD+D + ++ + +R K+IE+ M+AANE V
Sbjct: 468 KLAANLNQVRMRRGSIGFEIPEADIVLDDDGH-IDHIRRGERNMAHKLIEECMLAANEAV 526
Query: 456 AERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKE 515
AE + + ++YR HE PD K+ E G ++P + P F +++ +
Sbjct: 527 AEFLERQQAPTLYRIHEDPDPVKVTEFAEFAGAMGLQLPKGEP-GPGWFGQVLALAAGTP 585
Query: 516 TSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL--FSTIDN 573
+V +LR+L+QARY E++ HFGLA++HYTHFTSPIRRY DLMVHR+L + +
Sbjct: 586 REYIVSSLLLRSLQQARYAPENVGHFGLAATHYTHFTSPIRRYPDLMVHRILARLTAAEG 645
Query: 574 SIKPFKE-----------ADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
K ++ ADL +S+ ERVA+ AE + + YM +VGE +
Sbjct: 646 GGKKRQKQPVGAQGLAPAADLATAGLELSRRERVAVDAERNATERLVALYMADKVGEEFD 705
Query: 623 VMVTGFAQKKIFFETDEHIECSWDITTAI--NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
+V+G + +F E E + T + +YY D++++ + +S+++F +G+ + V
Sbjct: 706 AVVSGISSFGMFVELVEIMISGAVALTDLTDDYYEVDDKSHRLVGRNSNRIFQIGNPIRV 765
Query: 681 VLKKAD 686
L D
Sbjct: 766 RLSSVD 771
>gi|90020701|ref|YP_526528.1| Exoribonuclease II [Saccharophagus degradans 2-40]
gi|89950301|gb|ABD80316.1| Ribonuclease R [Saccharophagus degradans 2-40]
Length = 937
Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats.
Identities = 223/668 (33%), Positives = 342/668 (51%), Gaps = 36/668 (5%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++K ++G + ++ F FV D + I++ E GD
Sbjct: 71 GQLVSNRKGAYGSVNKMDLIRGKVQGHRDGFGFVIPTDGSDD--IYVSNREMRKVFSGDE 128
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSK 168
VLV + EG +V+++ H TVVG FV P G DI +P +
Sbjct: 129 VLVRADGYDIKGR-REGAIVEVLVHNTQTVVGKYFNEGGIHFVRPDNPRIGHDIMLPADQ 187
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSN--- 225
A +V E+ + R P G I +LG ID I L ++
Sbjct: 188 TNGAKPGQIVEAEVVRQPERRRPPSGSIKAVLGDHMAPGMEIDVAIRSYDLPHEWPKALE 247
Query: 226 -EAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
E +E+ EE D NR +L L +TIDG DA+D DDAVY E L++G ++L VAIA
Sbjct: 248 AEIAAYGREV--EEADKLNRHDLRKLPFVTIDGEDARDFDDAVYCEPLKSGGWRLFVAIA 305
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVSHYV + LD EA RGNSVY D VLPM P+ +SNG+CSLN ++L CEM I
Sbjct: 306 DVSHYVAVGSELDKEATSRGNSVYFPDYVLPMLPEVLSNGLCSLNPDVDRLCMVCEMTIS 365
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAIL--DGDKD--LINEYSDIYEMLKQMLELSKI 400
KG V +Y +++V+ S R+TY V +L G+K+ +Y+ + L + +L I
Sbjct: 366 AKGKVSSYAFFEAVMHSHARLTYTQVGKVLAERGNKNSGARKQYAKLLPQLDALHDLYTI 425
Query: 401 LRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIY 460
R ++ RG+IDFE E +++ DE N K++ ++ +R + K+IE+ M+AAN + A+ +
Sbjct: 426 FREQRDLRGAIDFETKETRILFDE-NRKIKDIVPVERNDAHKLIEECMLAANVSAAKFLS 484
Query: 461 WLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLV 520
LE+ ++YR HE P EKI L+E L + G + D + P+ +Q ++E+ + + + ++
Sbjct: 485 SLEVPALYRVHEGPKAEKIALLHEYLGELGLSMRGSDEVTPQDYQYVLEQIEGRPDAHII 544
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-----DNSI 575
+LR++ QA Y ++ HFGLA S Y HFTSPIRRY DL+VHR + S I N +
Sbjct: 545 QMVMLRSMNQAVYQADNKGHFGLAYSEYAHFTSPIRRYPDLLVHRAIRSVIRSNLDTNKV 604
Query: 576 K--------------PFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
K P+ DL + + S TER A +A + + EY+Q +VG+
Sbjct: 605 KRVEQTPVVAKETFYPYTPGDLASLGEQCSTTERRADEATRDVMSWLKCEYLQDKVGDEF 664
Query: 622 NVMVTGFAQKKIFFE-TDEHIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVD 679
+V+ +F E +D ++E IT +YY F+ + + + F LGD +
Sbjct: 665 EGVVSAVTGFGLFVELSDVYVEGLVHITALPQDYYHFEPARHRLVGERTRTTFKLGDSLT 724
Query: 680 VVLKKADL 687
V + + DL
Sbjct: 725 VRVVRVDL 732
>gi|94988044|ref|YP_596145.1| exoribonuclease II [Streptococcus pyogenes MGAS9429]
gi|94991930|ref|YP_600029.1| Exoribonuclease II [Streptococcus pyogenes MGAS2096]
gi|94541552|gb|ABF31601.1| exoribonuclease II [Streptococcus pyogenes MGAS9429]
gi|94545438|gb|ABF35485.1| Exoribonuclease II [Streptococcus pyogenes MGAS2096]
Length = 777
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 238/671 (35%), Positives = 374/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNVDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E KVI+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVALHRILEAMRSKRGALNFDTQEAKVIVNDKGIPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKAEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ +S + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYSQPSQEKRDHFTQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVASVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|21909888|ref|NP_664156.1| putative exoribonuclease R [Streptococcus pyogenes MGAS315]
gi|21904075|gb|AAM78959.1| putative exoribonuclease R [Streptococcus pyogenes MGAS315]
Length = 751
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 238/671 (35%), Positives = 374/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 22 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 76
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 77 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 134
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 135 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 187
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 188 GIDVLEVLESMDIVSEFPAEVLVEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 247
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 248 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 307
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 308 ICSLNPNVDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 367
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E KVI+++ V+ V+L+ RG E++I
Sbjct: 368 ASIADDVTLMVALHRILEAMRSKRGALNFDTQEAKVIVNDKGMPVD-VVLRQRGIAERMI 426
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 427 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKAEKLQQFIDYASTFGIHIQGTANKISQEA 486
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 487 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 546
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ +S + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 547 HRMVREYSQPSQEKRDHFTQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 606
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 607 DGIVASVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 666
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 667 LVKADKETGDI 677
>gi|77166348|ref|YP_344873.1| Ribonuclease R [Nitrosococcus oceani ATCC 19707]
gi|76884662|gb|ABA59343.1| Ribonuclease R [Nitrosococcus oceani ATCC 19707]
Length = 722
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 215/658 (32%), Positives = 355/658 (53%), Gaps = 20/658 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ +++ L V+G RII +K F E E +++ + L GD
Sbjct: 71 GQLMRNRRRAYGLVHKMDLVRG--RIIGHKDGFGFLVPDEGGEDLYLSARQMRAVLHGDR 128
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
+ ++T + + EG V++++E + VVG F++P+ +DI IP
Sbjct: 129 AVAQVTGIDRRGR-REGAVIEVLERNNHRVVGRFVAEDTLGFLVPSNQRLSQDILIPLEH 187
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + +V EIT R+P G+I+++LG +D + L + E +
Sbjct: 188 QEGAQDNQIVVAEITEQPTAKRQPIGRIVELLGDHMAPGMEMDIALQIHELPHVWPEEVL 247
Query: 229 QQTKEIIKEEIDY---SNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
+ K + K + + R +L +L ++TIDG DA+D DDAVY E+ + G ++L VAIAD
Sbjct: 248 TEAK-VFKTTVPRKAKAGRLDLRDLPLVTIDGEDAQDFDDAVYAERHDQG-WRLWVAIAD 305
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS YV+ + LD EA RGNSVY RV+PM P+ +SNG+CSLN K ++L CEM I
Sbjct: 306 VSWYVQPYSALDSEAEKRGNSVYFPSRVIPMLPEALSNGLCSLNPKVDRLCLVCEMVIGP 365
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDG-DKDLINEYSDIYEMLKQMLELSKILRIK 404
+G + ++ + V++S R+TY A+L+G D+ L Y + L+ M L ++L
Sbjct: 366 RGGLNSFRFHSGVMRSAARLTYHQAAALLEGSDRKLQERYKTVLPGLEAMHSLYQVLHKA 425
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE+ E ++I DE K++ + R + ++IE+FMI AN A + ++
Sbjct: 426 RARRGAIDFEMGETQIIFDE-AQKIKDIQPLVRNDAHRLIEEFMILANVAAARFLTQHKV 484
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR HE+P +K+V L++ L++ G + ++ K F + +++ + L+ I
Sbjct: 485 PTLYRVHERPADDKLVDLHKFLAELGLALQGGESPGAKDFARFLRSVQERPDAHLIQTVI 544
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDN-SIKPF--KEA 581
LR KQA Y+ ++ HFGL+ YTHFTSPIRRY DL+VHR + ++ S K F +
Sbjct: 545 LRTFKQAVYSPDNHGHFGLSLPVYTHFTSPIRRYPDLLVHRAIRHVLEQRSAKTFLYTQD 604
Query: 582 DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEH 640
++ + +H S TER A +A ++ EYM+ RVGE+ + ++TG +F E +D +
Sbjct: 605 EMMALGEHCSMTERRADEATRDAEDWLKCEYMKDRVGESFDGLITGVTSFGLFVELSDIY 664
Query: 641 IECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL----LTLEIA 693
+E +T N Y+ FD + + +V+ L DKV V++ + DL + LE+A
Sbjct: 665 VEGLVHVTALGNDYFHFDPAGRRLLGEHTRQVYRLADKVRVMVVRVDLDEKKIDLELA 722
>gi|70734079|ref|YP_257719.1| ribonuclease R [Pseudomonas fluorescens Pf-5]
gi|68348378|gb|AAY95984.1| ribonuclease R [Pseudomonas fluorescens Pf-5]
Length = 875
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 210/646 (32%), Positives = 342/646 (52%), Gaps = 39/646 (6%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D + +F+ + DGD L ++ + + EG +V+++
Sbjct: 97 RDGFGFLVPDDGSDD--LFMSPAQMRLVFDGDRALARVSGLDRRGR-REGVIVEVVSRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
++VG + FV+ +++ + + ANA V V+IT W +P+G
Sbjct: 154 ESIVGRYFEEGGIGFVVADNPKIQQEVLVTPGRNANAKIGQFVEVKITHWPTPRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSII 253
+++++G+ ID + + + +++ ++ E E D R +L +L +
Sbjct: 214 VVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLKEAGKLKPEVEEKDKEKRIDLRDLPFV 273
Query: 254 TIDGADAKDLDDAVYVE------KLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSV 307
TIDG DA+D DDAV+ E +L G +KL VAIADVS YVK + LD EA+ RGNSV
Sbjct: 274 TIDGEDARDFDDAVFCEAKPGKLRLFGGGWKLYVAIADVSSYVKIGSALDAEAQVRGNSV 333
Query: 308 YLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTY 367
Y +RV+PM P+++SNG+CSLN K ++L CEM I G++ +Y+ Y++VI S R+TY
Sbjct: 334 YFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEMTISKSGEMTDYQFYEAVIHSKARLTY 393
Query: 368 KDVNAILDGD-----KDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVIL 422
V+ +L+ K L EY D+ LKQ+ L K+L + TRG+IDFE E ++I
Sbjct: 394 NKVSTMLEQPKTSEAKQLRGEYGDVLPHLKQLYALYKVLLGARHTRGAIDFETQETRIIF 453
Query: 423 DEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTL 482
+ K+ ++ R + K+IE+ M+AAN AE + E+ ++YR H+ P E++ L
Sbjct: 454 GSE-RKIAEIRPTTRNDAHKLIEECMLAANVATAEFLKKHEIPALYRVHDGPPPERLEKL 512
Query: 483 NEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHF 541
L + G + D PK +Q ++E KD+ L+ +LR+L QA Y+ ++ HF
Sbjct: 513 RAFLGELGLSLHKGKDGPTPKDYQALLETIKDRPDYHLIQTVMLRSLSQAVYSADNQGHF 572
Query: 542 GLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEADL 583
GL YTHFTSPIRRY DL+ HR + S I + I P+ EA L
Sbjct: 573 GLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQDTPHVRRAGAMTIPKARIYPYDEATL 632
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIE 642
+++ + S +ER A +A + V E+M+ RVGE+ ++T +F E TD ++E
Sbjct: 633 EQLGEQCSMSERRADEATRDVVNWLKCEFMKDRVGESFPGVITAVTGFGLFVELTDIYVE 692
Query: 643 CSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+T +YY FD ++ + + + F LGD V+V + + DL
Sbjct: 693 GLVHVTALPGDYYHFDPVHHRLAGERTGRSFRLGDTVEVRVMRVDL 738
>gi|28896413|ref|NP_802763.1| putative exoribonuclease R [Streptococcus pyogenes SSI-1]
gi|28811664|dbj|BAC64596.1| putative exoribonuclease R [Streptococcus pyogenes SSI-1]
Length = 777
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 238/671 (35%), Positives = 374/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLVEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNVDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E KVI+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVALHRILEAMRSKRGALNFDTQEAKVIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKAEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ +S + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYSQPSQEKRDHFTQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVASVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|77408565|ref|ZP_00785301.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae COH1]
gi|77172839|gb|EAO75972.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae COH1]
Length = 801
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 237/673 (35%), Positives = 370/673 (54%), Gaps = 42/673 (6%)
Query: 44 LSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNN 103
L + D+G L + KK + V+G+FR K F F+ + E+ +FI K +
Sbjct: 48 LRFDDNGSLSLQKKEA---KKKEITVRGLFRANKAGFGFLSIDQDEDD--MFIGKNDIAY 102
Query: 104 ALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPT 155
A+DGDTV E KK +D+ AE RVV I+E T+VG E+ K ++
Sbjct: 103 AIDGDTV--EAVVKKPADRLNGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSK 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNSK 207
+ IYI + D +++ V+I D+ P + I+G +
Sbjct: 161 NQKINQKIYIRKEPVV-LDGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDVG 213
Query: 208 NMIDALIYREGLSEKFSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDD 265
+ ++ + +F + + + I E D R +L TIDGADAKDLDD
Sbjct: 214 IDVLEVLESMDIVSEFPEDVIAEANAIPDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDD 273
Query: 266 AVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGI 325
AV+++ L+NG+++L V IADVS+YV + + L+ EA RG SVY+ DRV+PM P+ +SNGI
Sbjct: 274 AVHIKLLDNGHFELGVHIADVSYYVTEGSALNREALSRGTSVYVTDRVVPMLPERLSNGI 333
Query: 326 CSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYS 385
CSLN ++LT SC MEID G VVN+++ +SVI + +RMTY VN I+ GD+++ +EY
Sbjct: 334 CSLNPNLDRLTQSCIMEIDQNGRVVNHQITQSVINTTYRMTYIAVNDIIAGDEEICSEYE 393
Query: 386 DIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIE 445
I ++ M+ L L + RG+++F+ E K+++++ V+ +++++RG E++IE
Sbjct: 394 SIVSSVQHMVTLHHTLEAMRTRRGALNFDTSEAKIMVNDKGMPVD-IVIRNRGIAERMIE 452
Query: 446 DFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQF 504
FM+AANETVAE L+L IYR HE+P EK+ + S FG +I +
Sbjct: 453 SFMLAANETVAEHYARLKLPFIYRIHEEPKAEKLQKFIDYASVFGVQIQGTATKITQSAL 512
Query: 505 QEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVH 564
Q+ +++ + + S ++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VH
Sbjct: 513 QDFMKKVQGQPGSEVLSMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVH 572
Query: 565 RVLFSTIDNSIKPFKEAD-----LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGE 619
R++ D K +AD + EIA S ER A+ AE +K EYM++ VGE
Sbjct: 573 RMIRDYDD---KAMDKADHFANLIPEIATQTSSLERRAIDAERIVEAMKKAEYMEEYVGE 629
Query: 620 TLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVD 679
+V + +F E IE +TT YY F+E ++ S KVF +G ++
Sbjct: 630 EFEGVVASVVKFGMFVELPNTIEGLIHVTTLPEYYHFNERTLTLQGEKSGKVFRVGQQIK 689
Query: 680 VVLKKADLLTLEI 692
V L ++D T +I
Sbjct: 690 VKLIRSDKETGDI 702
>gi|86134792|ref|ZP_01053374.1| putative exoribonuclease [Tenacibaculum sp. MED152]
gi|85821655|gb|EAQ42802.1| putative exoribonuclease [Polaribacter dokdonensis MED152]
Length = 739
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 244/703 (34%), Positives = 373/703 (53%), Gaps = 41/703 (5%)
Query: 18 KYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMD-KKHRLSLPENSGYVKGVFRII 76
K+ QI + L S K + L+ + + I + + + + E+ Y G I
Sbjct: 33 KFYNYKQIAAKLNVSDTDGKTQILKKLAELKANKKIKEVDRGKFQINEDRKYSIGTLDIT 92
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
N + +D E IFIP L GD V + ++K+S K E VV++IE K
Sbjct: 93 SNGNGYFVTDDYEND--IFIPNINLGKGLHGDVVRAYVYKRKRSHK-LEADVVEVIERAK 149
Query: 137 NTVVGILEKSKNFAFVI-PTGSFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
VG+L+KSKNF FVI DI+I +K+ A++ D V I+ W ++ + P GK
Sbjct: 150 TEFVGVLQKSKNFGFVICDNHKMYADIFISQNKMNIAEHGDKVQATISDWPENSKNPFGK 209
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEID--YSNRKNLTNLSII 253
I +LG + + +++ L +F E ++ +E+ E D + R+++ N
Sbjct: 210 ITTVLGKPGDHNTEMHSILLEYDLPYEFEPEVEKEAQELPIEITDKEIAKRRDMRNDLTF 269
Query: 254 TIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRV 313
TID DAKD DDA+ KLENGNY++ + IADVSHY++ +T+LD EA R SVYLVDRV
Sbjct: 270 TIDPKDAKDFDDALSFTKLENGNYEIGIHIADVSHYLQPKTILDDEAYDRATSVYLVDRV 329
Query: 314 LPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAI 373
+PM P+ +SNG+CSL EEKLTFS EI+ K + ++V S R Y++ I
Sbjct: 330 VPMLPEMLSNGVCSLRPNEEKLTFSAVFEINEKAQIKKQWFGRTVTYSDQRFAYEEAQYI 389
Query: 374 LDGDK--DLINEYS----------------DIYEMLKQMLELSKILRIKKFTRGSIDFEL 415
++ K D + ++ ++ E Q+ +L+KILR K+ +G+I F+
Sbjct: 390 IENCKLSDDVQPFTMPENVSITDSAYEVKAEVVEATLQLDKLAKILRKKRMKQGAISFDR 449
Query: 416 PELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE-----LASIYRT 470
E+K LDE+ N V V K + K+IE+FM+ AN VAE I + IYR
Sbjct: 450 VEVKFNLDEEANPV-GVFFKSSKDANKLIEEFMLLANRKVAEYIGSKQGKPSNKTFIYRV 508
Query: 471 HEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALK 529
H++PD EK+ +L I+SKFGYKI + +++ + K S ++ +R++
Sbjct: 509 HDEPDVEKLASLQNIISKFGYKINTETKESTSESLNQLLNDVQGKAESNMIETLAIRSMS 568
Query: 530 QARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQH 589
+A YT ++I H+GLA +Y+HFTSPIRRY D+M HR+L +D P K +E +H
Sbjct: 569 KAVYTTQNIGHYGLAFDYYSHFTSPIRRYPDVMTHRLLQLYLDGGESP-KADPYEEKCKH 627
Query: 590 ISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSW---- 645
SK E +A KAE S++ V+YMQ E ++TG + I+ E ++ +C
Sbjct: 628 SSKREELASKAERSSIKYMQVKYMQDHKDEVFEGVITGVTEWGIYVEITKN-KCEGMVRI 686
Query: 646 -DITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
DI + +YY FDE+ Y + + ++ LGD V V +KK DL
Sbjct: 687 RDIKS--DYYIFDEDQYAIVGQSTKHMYQLGDDVKVQVKKTDL 727
>gi|88801781|ref|ZP_01117309.1| ribonuclease R [Polaribacter irgensii 23-P]
gi|88782439|gb|EAR13616.1| ribonuclease R [Polaribacter irgensii 23-P]
Length = 740
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 234/666 (35%), Positives = 363/666 (54%), Gaps = 44/666 (6%)
Query: 56 KKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEIT 115
++ + + + Y G I N + ED ++ IFIP L DTV +
Sbjct: 72 ERGKFQINADRKYSIGTLDITSNGNGYFITEDYDDD--IFIPNNSLGKGLHQDTVKAYVY 129
Query: 116 EKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIP-TGSFGKDIYIPNSKIANADN 174
K +S K E VV+++E K VG+L+K+KNF FVIP DI+I + + A++
Sbjct: 130 -KNRSGKKMEADVVEVLERAKTEFVGVLQKNKNFGFVIPDNNKMYADIFISENNMQGAEH 188
Query: 175 KDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTK-- 232
D V +I W + + P GKII +LG + +++ L +F +E ++ +
Sbjct: 189 GDKVQAKIIDWPQNSKNPFGKIITVLGKPGEHNTEMHSILLEYDLPYEFESEVEKEAENL 248
Query: 233 --EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYV 290
EI KEEI S R+++ TID DAKD DDA+ +KLENGN+++ + IADVSHY+
Sbjct: 249 SIEITKEEI--SKRRDMRKDLTFTIDPKDAKDFDDALSFKKLENGNFEIGIHIADVSHYL 306
Query: 291 KKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVV 350
+ +T+LD EA R SVYLVDRV+PM P+ +SNG+CSL EEKLTFS EI+ K ++
Sbjct: 307 EPKTILDDEAYKRATSVYLVDRVVPMLPEMLSNGVCSLRPNEEKLTFSAVFEINQKAQII 366
Query: 351 NYEVYKSVIKSVHRMTYKDVNAILDGDK--DLINEYS----------------DIYEMLK 392
+ ++V S R Y++ +I++ K D I+ Y+ +I
Sbjct: 367 SQWFGRTVTYSDQRFAYEEAQSIIENCKLSDSISPYTMPADTSIIDKEYQVTPEIVAATL 426
Query: 393 QMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAAN 452
++ ELSKILR K+ G+I F+ E+K LD++ N V V K+ + K+IE+FM+ AN
Sbjct: 427 KLNELSKILRKKRMKDGAISFDRVEVKFDLDKEANPV-GVFFKESKDANKLIEEFMLLAN 485
Query: 453 ETVAERIYWLELAS-----IYRTHEKPDREKIVTLNEILSKFGYKI-PNFDNLHPKQFQE 506
VAE I + + + IYR H++PD EK+ +L ++SKFGYKI + +
Sbjct: 486 RKVAEFIGFSKGKATNKTFIYRVHDEPDVEKLASLQNMVSKFGYKINTDTKEATSDSLNQ 545
Query: 507 IIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRV 566
++ K S ++ +R + +A YT ++I H+GL+ +Y+HFTSPIRRY D+M HR+
Sbjct: 546 LLSDVHGKPESNMIETLTIRTMSKAVYTTQNIGHYGLSFDYYSHFTSPIRRYPDIMTHRL 605
Query: 567 LFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVT 626
L ++ P K +E +H SK E +A KAE S++ V+YMQ E ++T
Sbjct: 606 LQHYLEGGDTP-KALSYEEKCKHSSKREELASKAERSSIKYMQVKYMQDHKDEVFEGVIT 664
Query: 627 GFAQKKIFFETDEHIECSW-----DITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
G + I+ E + +C DI + ++Y FDE+ Y + + +++ LGD V +
Sbjct: 665 GVTEWGIYVEIATN-KCEGMVRIKDIKS--DFYMFDEKQYAIVGKSTKRMYQLGDDVKIQ 721
Query: 682 LKKADL 687
+KKADL
Sbjct: 722 VKKADL 727
>gi|25011590|ref|NP_735985.1| hypothetical protein gbs1548 [Streptococcus agalactiae NEM316]
gi|77414827|ref|ZP_00790944.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae 515]
gi|24413129|emb|CAD47207.1| Unknown [Streptococcus agalactiae NEM316]
gi|77159118|gb|EAO70312.1| exoribonuclease, VacB/Rnb family [Streptococcus agalactiae 515]
Length = 801
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 237/673 (35%), Positives = 369/673 (54%), Gaps = 42/673 (6%)
Query: 44 LSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNN 103
L + D+G L + KK + V+G+FR K F F+ + E+ +FI K +
Sbjct: 48 LRFDDNGSLSLRKKEA---KKKEITVRGLFRANKAGFGFLSIDQDEDD--MFIGKNDIAY 102
Query: 104 ALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVGIL----EKSKNFAFVIPT 155
A+DGDTV E KK +D+ AE RVV I+E T+VG E+ K ++
Sbjct: 103 AIDGDTV--EAVVKKPADRLKGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSK 160
Query: 156 GS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNSK 207
+ IYI + D +++ V+I D+ P + I+G +
Sbjct: 161 NQKINQKIYIRKEPVV-LDGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDVG 213
Query: 208 NMIDALIYREGLSEKFSNEAMQQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDD 265
+ ++ + +F + + + I E D R +L TIDGADAKDLDD
Sbjct: 214 IDVLEVLESMDIVSEFPEDVIAEANAIPDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDD 273
Query: 266 AVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGI 325
AV+++ L+NG+++L V IADVS+YV + + L+ EA RG SVY+ DRV+PM P+ +SNGI
Sbjct: 274 AVHIKLLDNGHFELGVHIADVSYYVTEGSALNREALSRGTSVYVTDRVVPMLPERLSNGI 333
Query: 326 CSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYS 385
CSLN ++LT SC MEID G VVN+++ +SVI + +RMTY VN I+ GD+++ +EY
Sbjct: 334 CSLNPNLDRLTQSCIMEIDQNGKVVNHQITQSVINTTYRMTYTAVNDIIAGDEEICSEYE 393
Query: 386 DIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIE 445
I ++ M+ L L + RG+++F+ E K+++++ V+ +++++RG E++IE
Sbjct: 394 SIVPSVQHMVTLHHTLEAMRTRRGALNFDTSEAKIMVNDKGMPVD-IVIRNRGIAERMIE 452
Query: 446 DFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIP-NFDNLHPKQF 504
FM+AANETVAE L+L IYR HE+P EK+ + S FG I +
Sbjct: 453 SFMLAANETVAEHYARLKLPFIYRIHEEPKAEKLQKFIDYASIFGVHIQGTATKITQSAL 512
Query: 505 QEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVH 564
Q+ +++ + + S ++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+VH
Sbjct: 513 QDFMKKVQGQPGSEVLSMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVH 572
Query: 565 RVLFSTIDNSIKPFKEAD-----LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGE 619
R++ D K +AD + EIA S ER A+ AE +K EYM++ VGE
Sbjct: 573 RMIR---DYGDKAMDKADHFANLIPEIATQTSSLERRAIDAERIVEAMKKAEYMEEYVGE 629
Query: 620 TLNVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVD 679
+V + +F E IE +TT YY F+E ++ S KVF +G ++
Sbjct: 630 EFEGVVASVVKFGMFVELPNTIEGLIHVTTLPEYYHFNERTLTLQGEKSGKVFRVGQQIK 689
Query: 680 VVLKKADLLTLEI 692
V L ++D T +I
Sbjct: 690 VKLIRSDKETGDI 702
>gi|148826494|ref|YP_001291247.1| hypothetical protein CGSHiEE_07735 [Haemophilus influenzae PittEE]
gi|148716654|gb|ABQ98864.1| hypothetical protein CGSHiEE_07735 [Haemophilus influenzae PittEE]
Length = 782
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 221/656 (33%), Positives = 343/656 (52%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F++V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VA+A
Sbjct: 249 VEKYVKKFTEEVPEEAQKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAVA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + +Y Y++V+ S R+TY V +L+GD++L YS + L+++ +L + L
Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLGA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERSDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VGE + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGEEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|56808170|ref|ZP_00365951.1| COG0557: Exoribonuclease R [Streptococcus pyogenes M49 591]
Length = 777
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 237/671 (35%), Positives = 375/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEILESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSSLDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNVDRLTQSALMEINPQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E KVI+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVTLHRILETMRSKRGALNFDTQEAKVIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKVEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ ++ + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMIREYNQPSQEKRDHFAQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V+ + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVSSVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|153807031|ref|ZP_01959699.1| hypothetical protein BACCAC_01308 [Bacteroides caccae ATCC 43185]
gi|149130151|gb|EDM21361.1| hypothetical protein BACCAC_01308 [Bacteroides caccae ATCC 43185]
Length = 718
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 211/609 (34%), Positives = 350/609 (57%), Gaps = 27/609 (4%)
Query: 94 IFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVI 153
IF+ + +A++ D V + K+K +K AEG V++I+E +T VG LE +K++AF++
Sbjct: 110 IFVAERNSAHAMNNDKVKITFYAKRK-NKDAEGEVIEILERANDTFVGTLEVAKSYAFLV 168
Query: 154 PTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDA 212
+ DI+IP K+ D V++T W D + P G++I ILG + + + A
Sbjct: 169 TENRTLANDIFIPKEKLKGGKTGDKAIVKVTEWPDKAKNPIGQVIDILGKAGENTTEMHA 228
Query: 213 LIYREGLS----EKFSNEAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVY 268
++ GL + A + EI EEI + R++ ++ TID DAKD DDA+
Sbjct: 229 ILAEFGLPYVYPKSVETAADKIPAEISAEEI--AKREDFRKVTTFTIDPKDAKDFDDALS 286
Query: 269 VEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSL 328
+ KL+ G +++ V IADV+HYVK+ ++D EA R SVYLVDR +PM P+ + N ICSL
Sbjct: 287 IRKLKEGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL 346
Query: 329 NEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIY 388
EEKL FS I KG+V + + +VI S R TY++ I++ + D
Sbjct: 347 RPNEEKLAFSVIFNITEKGEVKDSRIVHTVINSDRRFTYEEAQQIIE------TKEGDFK 400
Query: 389 EMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFM 448
E + + ++K LR K+F+ G+I+F+ E+K +DE + V K+ + K++E+FM
Sbjct: 401 EEVLTLDTIAKALREKRFSAGAINFDRYEVKFEIDEKGKPIS-VYFKESKDANKLVEEFM 459
Query: 449 IAANETVAERIYWL---ELASI--YRTHEKPDREKIVTLNEILSKFGYKIPNFDNLH--P 501
+ AN TVAE++ + + A + YR H+ PD EK+ L++ +++FGYK+
Sbjct: 460 LLANRTVAEKVGRVPKNKKAKVLPYRIHDLPDPEKLENLSQFIARFGYKVRTSGTKTDIS 519
Query: 502 KQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDL 561
K +++ K+ L+ +RA+++ARY+ +I H+GLA +YTHFTSPIRR+ D+
Sbjct: 520 KSINHLLDDIHGKKEENLIETVSIRAMQKARYSTHNIGHYGLAFEYYTHFTSPIRRFPDM 579
Query: 562 MVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
MVHR+L I N + EA +++ H S E++A AE S++ K VE+M +R+G+
Sbjct: 580 MVHRLLTKYI-NGGRSVSEAKYEDLCDHSSNMEQIAANAERASIKYKQVEFMSERLGQIY 638
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVFYLGDKV 678
+ +++G + ++ E +E+ +C + +YY FDE+NYC+R +K++ LGD +
Sbjct: 639 DGVISGVTEWGLYVELNEN-KCEGLVPIRDLDDDYYEFDEKNYCLRGRRKNKIYSLGDAI 697
Query: 679 DVVLKKADL 687
V + +A+L
Sbjct: 698 TVRVARANL 706
>gi|146283973|ref|YP_001174126.1| ribonuclease R [Pseudomonas stutzeri A1501]
gi|145572178|gb|ABP81284.1| ribonuclease R [Pseudomonas stutzeri A1501]
Length = 833
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 213/647 (32%), Positives = 339/647 (52%), Gaps = 42/647 (6%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D + +F+ + DGD L + + + EG +V++I
Sbjct: 97 RDGFGFLIPDDGSDD--LFLSPAQMRLVFDGDRCLARVAGLDRRGR-REGAIVEVISRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
++VG + FV+P +++ + + +A V V+IT W +P+G
Sbjct: 154 ESIVGRYHIESDVGFVVPDNPKIQQEVLVTPGRALDAKPGQFVEVKITHWPTQRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLS----EKFSNEAMQQTKEIIKEEIDYSNRKNLTNLS 251
I++++G+ ID + + E EA + E+ EE D R +L +L
Sbjct: 214 IVEVIGNYMAPGMEIDVALRSFDIPHVWPEAVLKEAARLKPEV--EEKDKHKRVDLRHLP 271
Query: 252 IITIDGADAKDLDDAVYVEK-----LENGNYKLIVAIADVSHYVKKETVLDLEARHRGNS 306
+TIDG DA+D DDAVY EK L G ++L VAIADVSHYVK ++ LD EA RGNS
Sbjct: 272 FVTIDGEDARDFDDAVYCEKPGGWKLLTGGFRLYVAIADVSHYVKVDSALDKEAVVRGNS 331
Query: 307 VYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMT 366
VY +RV+PM P+E+SNG+CSLN ++L CE+ + G + +Y+ Y++VI S R+T
Sbjct: 332 VYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEITLSKSGKMTDYQFYEAVIHSHARLT 391
Query: 367 YKDVNAILDGDKD-----LINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
Y V+A+L+ K L EY+++ LKQ+ L K+L + TRG+IDFE E +++
Sbjct: 392 YNKVSAMLEQPKSAEGKRLSAEYAEVLPHLKQLYSLYKVLLKARHTRGAIDFETQETRIV 451
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
D K+ + +R + K+IE+ M+ AN A + E+ ++YR H+ P E+
Sbjct: 452 FGAD-RKIAAIKPTERNDAHKLIEECMLCANVATAAFLQKHEIPALYRVHDAPPLERQEK 510
Query: 482 LNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISH 540
L L + G + + PK +Q ++E+ + + ++ +LR+L QA Y+ E+ H
Sbjct: 511 LRAFLGELGLSLHKGKEGPTPKDYQALLEKIQGRPDFHVIQTVMLRSLSQAVYSAENHGH 570
Query: 541 FGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDN------------------SIKPFKEAD 582
FGL Y HFTSPIRRY DL+VHR + S I + I P+ EA
Sbjct: 571 FGLNYEAYAHFTSPIRRYPDLLVHRAIRSVIRSRRDTPHVRREGAPSMPKARIYPYDEAA 630
Query: 583 LDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHI 641
L+++ + S TER A +A + V E+M+ RVGET ++T +F E TD ++
Sbjct: 631 LEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRVGETFPGVITAVTGFGLFVELTDIYV 690
Query: 642 ECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
E +T +YY FD ++ + S + F LGD V+V + + DL
Sbjct: 691 EGLVHVTAMPGDYYHFDPLHHRLSGERSGRSFRLGDSVEVRVMRVDL 737
>gi|19745621|ref|NP_606757.1| putative exoribonuclease R [Streptococcus pyogenes MGAS8232]
gi|19747749|gb|AAL97256.1| putative exoribonuclease R [Streptococcus pyogenes MGAS8232]
Length = 777
Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats.
Identities = 236/671 (35%), Positives = 374/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTATDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNVDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E K+I+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVTLHRILEAMRSKRGALNFDTQEAKIIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKVEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ ++ + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYNQPSQEKRDHFAQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVASVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|94993823|ref|YP_601921.1| Exoribonuclease II [Streptococcus pyogenes MGAS10750]
gi|94547331|gb|ABF37377.1| Exoribonuclease II [Streptococcus pyogenes MGAS10750]
Length = 777
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 236/671 (35%), Positives = 374/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNVDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E K+I+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVTLHRILEAMRSKRGALNFDTQEAKIIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKVEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ ++ + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYNQPSQEKRDHFAQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVASVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|15674608|ref|NP_268782.1| putative exoribonuclease R [Streptococcus pyogenes M1 GAS]
gi|13621719|gb|AAK33503.1| putative exoribonuclease R [Streptococcus pyogenes M1 GAS]
Length = 777
Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats.
Identities = 236/671 (35%), Positives = 375/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKP-------EGKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPIRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNIDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E K+I+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVALHRILEAMRSKRGALNFDTQEAKIIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKAEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ ++ + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYNQPSQEKRDHFAQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V+ + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVSSVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|119713687|gb|ABL97737.1| exoribonuclease [uncultured marine bacterium EB0_41B09]
Length = 749
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 220/649 (33%), Positives = 361/649 (55%), Gaps = 12/649 (1%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G +++++K L + + G + + F+ ED E + +F+ E + + D
Sbjct: 72 GQILINRKDVLCISKKINLSSGRVMGHPDGYGFLIPED-EAMDDVFLSPREMSQVFNKDR 130
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
V+V++T + + + EG++V+++E +VG + + + V +DI IP
Sbjct: 131 VMVQVTGQDRRGR-LEGKIVEVLERVNKVLVGRVIQGQGVTVVSAEDKRISQDILIPYDL 189
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
NA D+V VEIT KP GK+I ILG+ ++S I+ + + L F E +
Sbjct: 190 DLNAKTGDVVEVEITTQPSFRSKPMGKVINILGNYSDSGIEIEIALRKHNLPYVFKKEVI 249
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ + +E E D+ R ++ +L ++TIDG A+D DDAVY E+ ++ +++L+VAIADV
Sbjct: 250 KEAESFDQEVKEKDFKGRIDIRDLPLVTIDGETARDFDDAVYAEQKKD-SWRLVVAIADV 308
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
S YVK+ ++L+ A RGNSVY RV+PM P+ +SNG+CSLN ++L C+M DL
Sbjct: 309 STYVKETSMLNESAIERGNSVYFPRRVIPMLPEALSNGLCSLNPHVDRLCMVCDMTFDLN 368
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILD-GDKDLINEYSDIYEMLKQMLELSKILRIKK 405
GD+ Y+ Y SV+ S R+TY V+ IL+ D+ L EY Y+ L + L K+L K+
Sbjct: 369 GDITKYKFYPSVMNSKARLTYTIVDKILNKNDQTLKKEYEKSYKDLVNLQNLFKLLSKKR 428
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+IDF+ E ++ + D K++ + R E +IIE+ M++AN A +
Sbjct: 429 EKRGAIDFDSTETSIVFN-DKGKIDFIKPIYRNEAHRIIEECMLSANVCAANYLLDNPGD 487
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
IYR HE P EK+ L + L FG + K + EI+++ D+ + L+ +L
Sbjct: 488 GIYRNHETPSEEKLTNLRDFLLDFGLTLGGGSEPTVKDYGEILKKIADRPDAHLLQTVLL 547
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDE 585
R+++QA Y+ +++ HFGLA S YTHFTSPIRRY DL+VHR + S +D K K +++
Sbjct: 548 RSMQQAAYSSKNLGHFGLAYSAYTHFTSPIRRYPDLLVHRAIKSQLDG--KNSKIKNIEA 605
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIECS 644
IA H S TER+A A + +MQ +VGE+ V G +F E D+ +IE
Sbjct: 606 IALHCSTTERIADDATRDVESWLKCYFMQDKVGESFWGTVAGVTGFGLFIELDDIYIEGL 665
Query: 645 WDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+T N Y+ FD+ + M ++ + LGD++++ + + DL +++I
Sbjct: 666 LHVTELGNDYFTFDKARHAMVGEKTNLTYRLGDRLEIKVIRVDLDSIKI 714
>gi|71910227|ref|YP_281777.1| exoribonuclease II [Streptococcus pyogenes MGAS5005]
gi|71853009|gb|AAZ51032.1| exoribonuclease II [Streptococcus pyogenes MGAS5005]
Length = 776
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 236/671 (35%), Positives = 375/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 47 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 101
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 102 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 159
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKP-------EGKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 160 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPIRGHDYFVASVRDIVGHQGDV 212
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 213 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 272
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 273 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 332
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 333 ICSLNPNIDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 392
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E K+I+++ V+ V+L+ RG E++I
Sbjct: 393 ASIADDVTLMVALHRILEAMRSKRGALNFDTQEAKIIVNDKGMPVD-VVLRQRGIAERMI 451
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 452 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKAEKLQQFIDYASTFGIHIQGTANKISQEA 511
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 512 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 571
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ ++ + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 572 HRMVREYNQPSQEKRDHFAQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 631
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V+ + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 632 DGIVSSVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 691
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 692 LVKADKETGDI 702
>gi|68249455|ref|YP_248567.1| ribonuclease R [Haemophilus influenzae 86-028NP]
gi|68057654|gb|AAX87907.1| ribonuclease R [Haemophilus influenzae 86-028NP]
Length = 782
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 221/656 (33%), Positives = 344/656 (52%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL ++ + + E R+V+++E RK +VG F++V+P S G+DI +PN
Sbjct: 130 DFVLAQLAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKEMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG +++Y Y++V+ S R+TY V +L+GD++L YS + L+ + +L + L
Sbjct: 368 AKGKLIDYRFYEAVMNSHARLTYTKVAKMLEGDEELRARYSTLVPHLEDLYKLYQALLGA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERHDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VG + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|139474267|ref|YP_001128983.1| putative exoribonuclease R [Streptococcus pyogenes str. Manfredo]
gi|134272514|emb|CAM30777.1| putative exoribonuclease R [Streptococcus pyogenes str. Manfredo]
Length = 777
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 235/671 (35%), Positives = 375/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE ++V I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKIVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNVDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E K+I+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVTLHRILEAMRSKRGALNFDTQEAKIIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKVEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ ++ + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYNQPSQEKRDHFAQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V+ + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVSSVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|145628237|ref|ZP_01784038.1| hypothetical protein CGSHi22121_04330 [Haemophilus influenzae
22.1-21]
gi|144980012|gb|EDJ89671.1| hypothetical protein CGSHi22121_04330 [Haemophilus influenzae
22.1-21]
Length = 782
Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats.
Identities = 221/656 (33%), Positives = 341/656 (51%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F +V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFGYVVPDNSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R NL NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVPEEAKKGRVNLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG +++Y Y++V+ S R+TY V +L+GD++L YS + L+ + +L + L
Sbjct: 368 AKGKLIDYRFYEAVMNSHARLTYTKVAKMLEGDEELRARYSTLVPHLEDLYKLYQALLGA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VG + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDK+ + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKIRIKVEAVHL 722
>gi|29348486|ref|NP_811989.1| ribonuclease R [Bacteroides thetaiotaomicron VPI-5482]
gi|29340390|gb|AAO78183.1| ribonuclease R [Bacteroides thetaiotaomicron VPI-5482]
Length = 718
Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats.
Identities = 204/609 (33%), Positives = 348/609 (57%), Gaps = 27/609 (4%)
Query: 94 IFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVI 153
IF+ + +A++ D V + K+K +K AEG V++I+E +T VG LE +K++AF++
Sbjct: 110 IFVAERNSAHAMNNDKVKITFYAKRK-NKDAEGEVIEILERANDTFVGTLEVAKSYAFLV 168
Query: 154 PTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDA 212
+ DI+IP K+ D V++T W D + P G++I ILG + ++ + A
Sbjct: 169 TENRTLANDIFIPKEKLKGGKTGDKAIVKVTEWPDKAKNPIGQVIDILGVAGDNTTEMHA 228
Query: 213 LIYREGLS----EKFSNEAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVY 268
++ GL + A + EI EEI + R++ ++ TID DAKD DDA+
Sbjct: 229 ILAEFGLPYVYPKAVETAADKIPAEITPEEI--ARREDFRKVTTFTIDPKDAKDFDDALS 286
Query: 269 VEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSL 328
+ +++G +++ V IADV+HYVK+ ++D EA R SVYLVDR +PM P+ + N ICSL
Sbjct: 287 IRPIKDGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL 346
Query: 329 NEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIY 388
EEKL FS +I KG+V + + +VI S R TY++ I++ + D
Sbjct: 347 RPNEEKLAFSVIFDITEKGEVRDSRIVHTVINSDRRFTYEEAQQIIE------TKTGDFK 400
Query: 389 EMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFM 448
E + + ++K LR K+F G+I+F+ E+K +DE + V K+ + K++E+FM
Sbjct: 401 EEVLMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKPIS-VYFKESKDANKLVEEFM 459
Query: 449 IAANETVAERIYWLELASI-----YRTHEKPDREKIVTLNEILSKFGYKIPNFDNLH--P 501
+ AN TVAE++ + YR H+ PD EK+ L++ +++FGYK+
Sbjct: 460 LLANRTVAEKVGRVPKNKKPKVLPYRIHDLPDPEKLENLSQFIARFGYKVRTSGTKTDIS 519
Query: 502 KQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDL 561
K +++ K+ L+ +RA+++ARY+ +I H+GLA +YTHFTSPIRR+ D+
Sbjct: 520 KSINHLLDDIHGKKEENLIETVSIRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDM 579
Query: 562 MVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
MVHR++ +D + E+ +++ H S E++A AE S++ K VE+M +R+G+
Sbjct: 580 MVHRLVTKYMDGG-RSVSESKYEDLCDHSSNMEQIAANAERASIKYKQVEFMSERLGQIY 638
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVFYLGDKV 678
+ +++G + ++ E +E+ +C + +YY FDE+NYC+R +K++ LGD +
Sbjct: 639 DGVISGVTEWGLYVELNEN-KCEGMVPIRDLDDDYYEFDEKNYCLRGRRKNKIYSLGDAI 697
Query: 679 DVVLKKADL 687
+ + +A+L
Sbjct: 698 TIRVARANL 706
>gi|94989924|ref|YP_598024.1| Exoribonuclease II [Streptococcus pyogenes MGAS10270]
gi|94543432|gb|ABF33480.1| Exoribonuclease II [Streptococcus pyogenes MGAS10270]
Length = 777
Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats.
Identities = 236/671 (35%), Positives = 375/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE +VV I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKVVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E
Sbjct: 334 ICSLNPNVDRLTQSALMEINSQGHVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQES 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E K+I+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVALHRILEAMRSKRGALNFDTQEAKIIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKVEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ ++ + + E+A S++ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYNQPSQEKRDHFAQIIPELATSSSQSERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V+ + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVSSVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|114778676|ref|ZP_01453488.1| exoribonuclease II [Mariprofundus ferrooxydans PV-1]
gi|114551038|gb|EAU53600.1| exoribonuclease II [Mariprofundus ferrooxydans PV-1]
Length = 707
Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats.
Identities = 213/629 (33%), Positives = 336/629 (53%), Gaps = 27/629 (4%)
Query: 80 FAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTV 139
F FVD E E+ G F+P EE N + GD V V +K+ + AE VV+I+EH +
Sbjct: 85 FGFVDVEGREK--GFFLPHEEMNGLMHGDIVEVRPV-RKRGRESAE--VVRIVEHASTVL 139
Query: 140 VGILEKSKNFAFVIP-TGSFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIK 198
VG A V P + + + I I + A + D V +EI D GK+ +
Sbjct: 140 VGQYLVQGKIAVVQPRSRNMPQAILIAHGDAGTASDGDWVRIEIK---RDAGHVRGKVQE 196
Query: 199 ILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITID 256
+LG + + +ID ++ + L F + + + E D RK+L ++ +TID
Sbjct: 197 VLGDNLSPSRLIDLIVAEQQLDVDFPPAVIAEANAFADQVLESDIKGRKDLRHIPFVTID 256
Query: 257 GADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPM 316
G DA+D DDAV V G ++ V+IADVSHYV+ + LD EA R NS Y DRV+PM
Sbjct: 257 GEDARDFDDAVCVLPRGEG-FEAWVSIADVSHYVRPHSALDKEALARSNSFYFPDRVIPM 315
Query: 317 FPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDG 376
P+++SNG+CSLN +L + M D G + VY+SVI S R+TY +A L+
Sbjct: 316 LPEKLSNGLCSLNPHLPRLGMTVRMRFDANGTRRSIHVYESVIHSQARLTYTQASAWLEE 375
Query: 377 DKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKD 436
+ E ++ EML L + L K+ RG++D ++PE++ +L +D V ++ +
Sbjct: 376 RDETAVEKPELREMLDDAARLFRKLEKKRKQRGALDLDMPEVRALLQDD--VVVDIVASE 433
Query: 437 RGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGY--KIP 494
R +++IE+ M+AAN VAE + E A +YR H P+R+ I TLNE L+ FG K+P
Sbjct: 434 RNIAQRLIEEMMLAANTAVAEYMDAHECALLYRIHPAPERQAIETLNEFLAPFGLFVKLP 493
Query: 495 NF----DNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTH 550
+ P Q ++E+S+ K + ++H+ +LR+++QA+YT ++ HFGLA Y H
Sbjct: 494 KIKEKDSQVRPGDVQLVLEQSEGKPFAHVLHRLVLRSMQQAKYTPVNVGHFGLAYDSYAH 553
Query: 551 FTSPIRRYSDLMVHRVLFSTI----DNSIKPFKEADLDEIAQHISKTERVAMKAEDESVR 606
FTSPIRRY+DL+VHR L + I N ++P L +I S ER + E ++
Sbjct: 554 FTSPIRRYADLIVHRRLKALIRGEDPNRVQPV--GTLADIGLQTSTQERKQQRGEWDTQA 611
Query: 607 IKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHI-ECSWDITTAINYYAFDEENYCMRD 665
+ + K VG+T+ ++G +++IFFE + + E + + DE + +
Sbjct: 612 MLAALFHSKDVGKTMPARISGLTKRRIFFEIEPTMAEAGLAVDDLPGAFELDETGHRLAA 671
Query: 666 TDSDKVFYLGDKVDVVLKKADLLTLEIAV 694
++LGD++DVV+ D + +I V
Sbjct: 672 RRGGSAYHLGDRLDVVIDSTDPVRGQINV 700
>gi|46129169|ref|ZP_00155776.2| COG0557: Exoribonuclease R [Haemophilus influenzae R2846]
Length = 782
Score = 335 bits (858), Expect = 8e-90, Method: Composition-based stats.
Identities = 221/656 (33%), Positives = 342/656 (52%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F++V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + +Y Y++V+ S R+TY V +L+GD++L YS + L+++ +L + L
Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLGA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERSDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VG + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSMTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|145632230|ref|ZP_01787965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 3655]
gi|144987137|gb|EDJ93667.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 3655]
Length = 782
Score = 335 bits (858), Expect = 9e-90, Method: Composition-based stats.
Identities = 221/656 (33%), Positives = 342/656 (52%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F++V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + +Y Y++V+ S R+TY V +L+GD++L YS + L+++ +L + L
Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLSA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VG + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|50913787|ref|YP_059759.1| Exoribonuclease II [Streptococcus pyogenes MGAS10394]
gi|50902861|gb|AAT86576.1| Exoribonuclease II [Streptococcus pyogenes MGAS10394]
Length = 777
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 236/671 (35%), Positives = 375/671 (55%), Gaps = 36/671 (5%)
Query: 43 ILSWIDSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFN 102
+L + D G L + K+ + V+GVFR K F F+ +++E+ +FI + +
Sbjct: 48 LLRFSDDGSLALRKERE---KKKEPTVQGVFRANKAGFGFLHVDENEDD--MFIGRNDVG 102
Query: 103 NALDGDTVLVEITEKKKSDK----GAEGRVVKIIEHRKNTVVG--ILEKSK-NFAFVIPT 155
A+DGDTV E+ KK +D+ AE ++V I++ T VG IL+ K +A I +
Sbjct: 103 YAIDGDTV--EVVVKKPADRLKGTAAEAKIVAIVDRSLKTAVGTFILDDDKPKYAGYIRS 160
Query: 156 GS--FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPE-------GKIIKILGSSTNS 206
+ + IYI + +++ V+I D+ P + I+G +
Sbjct: 161 KNQKIQQKIYIKKEPVV-LKGTEIIKVDI------DKYPTRGHDYFVASVRDIVGHQGDV 213
Query: 207 KNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI--DYSNRKNLTNLSIITIDGADAKDLD 264
+ ++ + +F E + + I + D R +L + ITIDGADAKDLD
Sbjct: 214 GIDVLEVLESMDIVSEFPAEVLAEANAISEAPTAKDLIGRVDLRQETTITIDGADAKDLD 273
Query: 265 DAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNG 324
DA++++ L+NGNY+L V IADVS+YV + + LD EA RG SVY+ DRV+PM P+ +SNG
Sbjct: 274 DAIHIKLLDNGNYELGVHIADVSYYVTEGSSLDKEAIARGTSVYVTDRVVPMLPERLSNG 333
Query: 325 ICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEY 384
ICSLN ++LT S MEI+ +G VVNY++ +SVIK+ +RMTY VN ++ GD++ + E+
Sbjct: 334 ICSLNPNVDRLTQSALMEINPQGYVVNYQICQSVIKTTYRMTYSTVNDMIAGDEEALQEF 393
Query: 385 SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKII 444
+ I + + M+ L +IL + RG+++F+ E KVI+++ V+ V+L+ RG E++I
Sbjct: 394 ASIADDVTLMVTLHRILEAMRSKRGALNFDTQEAKVIVNDKGMPVD-VVLRQRGIAERMI 452
Query: 445 EDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDN-LHPKQ 503
E FM+AANE VAE +L IYR HE+P EK+ + S FG I N + +
Sbjct: 453 ESFMLAANECVAEHFAKAKLPFIYRIHEEPKVEKLQQFIDYASTFGIHIQGTANKISQEA 512
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
Q + + + + + +++ +LR+++QARY+ + H+GLA+ +YTHFTSPIRRY DL+V
Sbjct: 513 LQAFMAKVEGQPGAEVLNMMLLRSMQQARYSEHNHGHYGLAAEYYTHFTSPIRRYPDLLV 572
Query: 564 HRVL--FSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
HR++ ++ + + E+A S+ ER A+ AE +K EYM + VGE
Sbjct: 573 HRMVREYNQPSQEKRDHFAQIIPELATSSSQLERRAIDAERVVEAMKKAEYMAEYVGEEF 632
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVV 681
+ +V+ + F E IE IT+ YY F+E ++ S KVF +G + V
Sbjct: 633 DGIVSSVVKFGFFVELPNTIEGLVHITSLPEYYHFNERTLSLQGEKSGKVFKVGQPIRVK 692
Query: 682 LKKADLLTLEI 692
L KAD T +I
Sbjct: 693 LVKADKETGDI 703
>gi|145637022|ref|ZP_01792686.1| hypothetical protein CGSHiHH_04950 [Haemophilus influenzae PittHH]
gi|145269880|gb|EDK09819.1| hypothetical protein CGSHiHH_04950 [Haemophilus influenzae PittHH]
Length = 782
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 221/656 (33%), Positives = 341/656 (51%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL ++ + + E R+V+++E RK +VG F +V+P S G+DI +PN
Sbjct: 130 DFVLAQLAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + +Y Y++V+ S R+TY V +L+GD++L YS + L+ + +L + L
Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEDLYKLYQALLGA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETNFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VGE + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGEEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|77456760|ref|YP_346265.1| 3'-5' exoribonuclease, VacB and RNase II [Pseudomonas fluorescens
PfO-1]
gi|77380763|gb|ABA72276.1| 3'-5' exoribonuclease, VacB and RNase II [Pseudomonas fluorescens
PfO-1]
Length = 876
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 224/712 (31%), Positives = 365/712 (51%), Gaps = 50/712 (7%)
Query: 11 KELLKDVKYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPENSGYVK 70
++L+++ T DQI + ++D ++I + G K L L SG+
Sbjct: 42 EQLVEEFGLTTEDQIEALRRRLRAMERDAQLI---YTRRGTYAPVDKLDLILGRISGHRD 98
Query: 71 GVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVK 130
G F F+ +D + +F+ + DGD L ++ + + EG +V+
Sbjct: 99 G--------FGFLVPDDGSDD--LFMSPAQMRLVFDGDRALARVSGLDRRGR-REGVIVE 147
Query: 131 IIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDD 189
++ ++VG + FV+ +++ + + ANA V V+IT W
Sbjct: 148 VVSRAHESIVGRYFEEGGIGFVVADNPKIQQEVLVTPGRNANAQIGQFVEVKITHWPTPR 207
Query: 190 RKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNL 247
+P+G +I+++G+ ID + + + +++ ++ E E D R +L
Sbjct: 208 FQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLKEAGKLKPEVEEKDKEKRVDL 267
Query: 248 TNLSIITIDGADAKDLDDAVYVE------KLENGNYKLIVAIADVSHYVKKETVLDLEAR 301
+L +TIDG DA+D DDAVY E +L +G +KL VAIADVS YVK + LD EA+
Sbjct: 268 RHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLYVAIADVSSYVKIGSALDNEAQ 327
Query: 302 HRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKS 361
RGNSVY +RV+PM P+++SNG+CSLN ++L CEM I G++ +Y Y++VI S
Sbjct: 328 VRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDRLAMVCEMTISKSGEMTDYCFYEAVIHS 387
Query: 362 VHRMTYKDVNAILDGDK-----DLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELP 416
R+TY V+A+L+ K L EY+D+ LKQ+ L K+L + RG+IDFE
Sbjct: 388 HARLTYNKVSAMLETPKATEGRKLRGEYTDVLPHLKQLYALYKVLLAARHVRGAIDFETQ 447
Query: 417 ELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDR 476
E ++I + K+ ++ R + K+IE+ M+AAN AE + E+ ++YR H+ P
Sbjct: 448 ETRIIFGSE-RKIAEIRPTTRNDAHKLIEECMLAANVATAEFLKKHEIPALYRVHDGPPP 506
Query: 477 EKIVTLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTV 535
E++ L L + G + D PK +Q ++ KD+ L+ +LR+L QA Y+
Sbjct: 507 ERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLASIKDRPDFHLIQTVMLRSLSQAVYSA 566
Query: 536 EDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKP 577
++ HFGL YTHFTSPIRRY DL+ HR + S I + I P
Sbjct: 567 QNEGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQDTPHVRRAGAMTIPKARIYP 626
Query: 578 FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE- 636
+ EA L+++ + S +ER A +A + V E+M+ RVGE+ ++T +F E
Sbjct: 627 YDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKDRVGESFPGVITAVTGFGLFVEL 686
Query: 637 TDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
TD ++E +T +YY FD ++ + + + F LGD V+V + + DL
Sbjct: 687 TDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTGRSFRLGDTVEVRVMRVDL 738
>gi|59712921|ref|YP_205697.1| ribonuclease R [Vibrio fischeri ES114]
gi|59481022|gb|AAW86809.1| ribonuclease R [Vibrio fischeri ES114]
Length = 835
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 222/672 (33%), Positives = 344/672 (51%), Gaps = 38/672 (5%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE +KGV ++ F ++ E S K+ + +P + + GD
Sbjct: 70 GQLVFTRRQCYALPERIEMLKGVVLGHRDGFGWIRPEGSLGKDNDVLLPFHQMKKVIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ T K + EGRVV+++E R +VG FV+P S +DI+IP
Sbjct: 130 VVLVQPTGTDKRGR-KEGRVVRVLEPRNEGIVGRFFIEDGMGFVVPDDSRISQDIFIPKE 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A ++V ++IT G R GKI ++LG + ID + + +
Sbjct: 189 HKMGARMGNVVVMDITDRGSRARGMTGKITEVLGENMAPGMEIDIALRTHNIPHVWPAAV 248
Query: 228 MQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
+Q + + +E E R +L L ++TIDG DA+D DDAV+ + +G ++L VAIAD
Sbjct: 249 EKQVEGLGEEVPEEAKEGRVDLRELPLVTIDGEDARDFDDAVFCQAKASGGWRLWVAIAD 308
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ + LD EA RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 309 VSYYVRPDNALDKEAIQRGNSVYFPAQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTISA 368
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y+ Y++V+ S R+TY V+ ILDGD++L Y + LK++ + ++L+ +
Sbjct: 369 SGKLSGYKHYEAVMNSHARLTYNKVSDILDGDEELTQRYEPLVPHLKELHNMYQVLKTAR 428
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+I+FE E K I + D K++ + R + KIIE+ MI AN A + +
Sbjct: 429 EARGAIEFETIETKFIFNAD-RKIDSIEPVIRNDAHKIIEECMILANIASATFVEKAKEP 487
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR HE P E++ + L + G + P + +++ D+ L+ +L
Sbjct: 488 ALYRVHESPGEERLQGFRDFLGELGLSLSGGLTPSPTDYGQLVHVIADRPDKELIQTMLL 547
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP- 577
R++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I ++ P
Sbjct: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEKGQNNDRWTPT 607
Query: 578 ----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN---VMVTGFAQ 630
+ D+D + S TER A A + EYMQ +GE L VTGF
Sbjct: 608 GGYHYSFDDMDVFGEQCSMTERRADDATRDVSDWLKCEYMQDHIGEELEGVIANVTGFG- 666
Query: 631 KKIFFE--TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
FF D HI+ I++ N YY FD + S ++F LGD+V
Sbjct: 667 ---FFVRLNDLHIDGLVHISSLANDYYQFDPAGQRLTGESSGQIFRLGDQV--------- 714
Query: 688 LTLEIAVVPLDD 699
T+++ V LDD
Sbjct: 715 -TVKVVAVNLDD 725
>gi|53715849|ref|YP_101841.1| ribonuclease R [Bacteroides fragilis YCH46]
gi|60683768|ref|YP_213912.1| putative exoribonuclease [Bacteroides fragilis NCTC 9343]
gi|52218714|dbj|BAD51307.1| ribonuclease R [Bacteroides fragilis YCH46]
gi|60495202|emb|CAH10023.1| putative exoribonuclease [Bacteroides fragilis NCTC 9343]
Length = 714
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 203/609 (33%), Positives = 348/609 (57%), Gaps = 27/609 (4%)
Query: 94 IFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVI 153
IF+ + +A++ D V + K++ + AEG V++I++ +T VG LE K++AF++
Sbjct: 107 IFVAERNSAHAMNNDKVRIAFYAKRRGCE-AEGEVIEILQRANDTFVGTLEVEKSYAFLV 165
Query: 154 PTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDA 212
+ DI+IP K+ D V++T W D + P G+++ ILG + ++ + A
Sbjct: 166 TENRTLANDIFIPKDKLKGGKTGDKAVVKVTEWPDKAKNPIGQVLDILGKAGDNTTEMHA 225
Query: 213 LIYREGLS----EKFSNEAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVY 268
++ GL + A + EI EEI + R++ ++ TID DAKD DDA+
Sbjct: 226 ILAEFGLPYVYPQSVEKAADKIPAEISAEEI--ARREDFRKVTTFTIDPKDAKDFDDALS 283
Query: 269 VEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSL 328
+ L++G +++ V IADV+HYVK+ +++D EA R SVYLVDR +PM P+ + N ICSL
Sbjct: 284 IRPLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSL 343
Query: 329 NEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIY 388
EEKL FS +I KG+V + + +VI+S R TY++ I++ + D
Sbjct: 344 RPNEEKLAFSAIFDITEKGEVRDSRIVHTVIESDRRFTYEEAQQIIE------TKEGDFK 397
Query: 389 EMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFM 448
+ + + ++K LR K+FT G+I+F+ E+K +DE + V K+ + K++E+FM
Sbjct: 398 DEILMLDTIAKALREKRFTAGAINFDRYEVKFEIDEKGKPIS-VYFKESKDANKLVEEFM 456
Query: 449 IAANETVAERIYWLELASI-----YRTHEKPDREKIVTLNEILSKFGYKIPNFDNLH--P 501
+ AN TVAE+I YR H+ PD EK+ L + +++FGY++
Sbjct: 457 LLANRTVAEKIGKAPKGKKPKVLPYRIHDLPDPEKLDNLAQFIARFGYRLRTSGTKTDVS 516
Query: 502 KQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDL 561
K +++ + K+ L+ +RA+++ARY+ +I H+GLA +YTHFTSPIRR+ D+
Sbjct: 517 KSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDM 576
Query: 562 MVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETL 621
MVHR++ +D + E +++ H S E++A AE S++ K VE+M +R+G+T
Sbjct: 577 MVHRLVTRYMDGG-RSVSETKYEDLCDHSSNMEQIAANAERASIKYKQVEFMSERLGQTY 635
Query: 622 NVMVTGFAQKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVFYLGDKV 678
+ +++G + ++ E +E+ +C I +YY FDE+NYC+R ++++ LGD +
Sbjct: 636 DGVISGVTEWGLYVELNEN-KCEGMIPIRDLDDDYYEFDEKNYCLRGRRKNRIYSLGDAI 694
Query: 679 DVVLKKADL 687
V + +A+L
Sbjct: 695 TVKVARANL 703
>gi|145634716|ref|ZP_01790424.1| hypothetical protein CGSHiAA_03908 [Haemophilus influenzae PittAA]
gi|145267882|gb|EDK07878.1| hypothetical protein CGSHiAA_03908 [Haemophilus influenzae PittAA]
Length = 782
Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 221/656 (33%), Positives = 342/656 (52%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F++V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +IL + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILDDNMAKGMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + +Y Y++V+ S R+TY V +L+GD++L YS + L+++ +L + L
Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLSA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + L K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKLTTKDYAALLEKVKERPDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VG + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|106888097|ref|ZP_01355342.1| Exoribonuclease II [Clostridium phytofermentans ISDg]
gi|106764398|gb|EAT21232.1| Exoribonuclease II [Clostridium phytofermentans ISDg]
Length = 473
Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats.
Identities = 196/460 (42%), Positives = 287/460 (62%), Gaps = 9/460 (1%)
Query: 240 DYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLE 299
D R +L NL +TIDG DAKDLD+A+ + K + Y+L V IADVS+YV +++ LD E
Sbjct: 3 DIGGRVDLRNLQTVTIDGEDAKDLDEAITLSK-KGDIYQLGVHIADVSNYVTEDSPLDKE 61
Query: 300 ARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVI 359
A RG SVYLVDRV+PM P ++SNGICSLN ++L SC MEID KG+VV + + ++VI
Sbjct: 62 ALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGSDRLALSCMMEIDEKGNVVGHRIAETVI 121
Query: 360 KSVHRMTYKDVNAIL-DGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPEL 418
RMTY V I+ D D+ I EY ++ M + MLEL+ ILR K+ RGSIDF+ PE
Sbjct: 122 NVDRRMTYTSVKKIIEDHDEAEIEEYKELVPMFELMLELADILREKRRKRGSIDFDFPES 181
Query: 419 KVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREK 478
K+ILD D + + +R + KIIEDFM+ ANETVAE +W EL +YRTHE PD EK
Sbjct: 182 KIILDSDGRPTD-IKPYERNKATKIIEDFMLIANETVAEDFFWQELPFVYRTHENPDLEK 240
Query: 479 IVTLNEILSKFGYKIP-NFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVED 537
I L+ ++ FGY + D +HPK+ Q+++ + K L+ + LR++KQA+YT
Sbjct: 241 IQKLSVFINNFGYTMRIGQDEIHPKELQKLLIKIDGKPEEALISRLTLRSMKQAKYTTTC 300
Query: 538 ISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFK----EADLDEIAQHISKT 593
HFGL++ +Y+HFTSPIRRY DL +HR++ + +K + E+ L+E+A+ S
Sbjct: 301 DGHFGLSTKYYSHFTSPIRRYPDLQIHRIIKENLRGGLKEKRINHYESILNEVARQSSLA 360
Query: 594 ERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDITTA-IN 652
ER A ++E E ++K VEYM + +G+T +++G ++ E +E + +
Sbjct: 361 ERRADESEREVEKLKKVEYMSQFIGQTFEGVISGVTSWGMYVELPNTVEGMIRLADMHDD 420
Query: 653 YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
YY +DEE+Y + + K++ LG+ V + ++ D L I
Sbjct: 421 YYIYDEEHYLLTGEHTKKIYKLGEAVVIRVEDTDKLMRTI 460
>gi|148828044|ref|YP_001292797.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae PittGG]
gi|148719286|gb|ABR00414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae PittGG]
Length = 782
Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats.
Identities = 221/656 (33%), Positives = 341/656 (51%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F++V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + +Y Y++V+ S R+TY V +L+GD++L YS + L+ + +L + L
Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRARYSTLVPHLEDLYKLYQALLGA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQADYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VG + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDATKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|91775979|ref|YP_545735.1| Ribonuclease R [Methylobacillus flagellatus KT]
gi|91709966|gb|ABE49894.1| Ribonuclease R [Methylobacillus flagellatus KT]
Length = 840
Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats.
Identities = 209/649 (32%), Positives = 344/649 (53%), Gaps = 13/649 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G +I ++K L + E + G + + F F + + +F+ E + GD
Sbjct: 90 GQIIQNRKGALCIAEKVNLLAGRVQGHPDGFGFFIPDGGGDD--LFLSPREMAQVMHGDR 147
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
V+V + + EGR+V+++E T+VG + S V +DI IP
Sbjct: 148 VMVRPAGTDRRGR-PEGRIVEVLERATKTLVGRVISSHGVTIVAAEDKRVNQDILIPYHL 206
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + +V VE+T KP GK+I+ILG+ + I+ + + L +FS A+
Sbjct: 207 DMGAKDGQVVTVELTEQPSIHAKPVGKVIEILGNYADPGMEIEIALRKHHLPHEFSEAAI 266
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
+Q ++ K+ D+ R +L L ++TIDG A+D DDAVY E G ++L+VAIADV
Sbjct: 267 KQAQKYPKKVRAADWKGRIDLRELPLVTIDGETARDFDDAVYCEPQGTG-WRLVVAIADV 325
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
S YV+ LD +A RGNSVY RV+PM P+ +SNG+CSLN ++L C+M+I
Sbjct: 326 SFYVRPGDSLDKDAYERGNSVYFPRRVIPMLPEALSNGLCSLNPDVDRLCMICDMQISNT 385
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDV-NAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y+ Y SV++S RMTY V + I + ++ EY + ++ + L K++ +
Sbjct: 386 GRIKQYKFYPSVMRSKARMTYTKVFDMISNPAGEVAREYDWLMPHVQHLYRLYKVMLAAR 445
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+I+FE E ++ + DN K+E++ R E ++IE+ M+AAN A + +
Sbjct: 446 EKRGAIEFESNETLMVFN-DNGKIERIEATSRNEAHRLIEECMLAANVCAANFLDKCKHP 504
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR H+ P EK+ L + +FG+ + D H K + +++ + K + L+ +L
Sbjct: 505 ALYRVHDGPTEEKLEALRTFMGEFGFTLGGGDTPHAKDYGKLLAQIKGRPDEQLLQTVLL 564
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDE 585
R+++QA Y+ ++I HFGLA YTHFTSPIRRY DL++HR + + ++ + +K D +E
Sbjct: 565 RSMQQAVYSPDNIGHFGLAYEAYTHFTSPIRRYPDLLIHRAIKAALNGEV--YKAGDWNE 622
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIECS 644
+ +H S TER A A + YMQ ++GE + V G +F D ++E
Sbjct: 623 LGKHCSMTERRADDATRDVEAWLKCYYMQDKIGEEFDGTVAGVTSFGLFVALDGVYVEGL 682
Query: 645 WDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+T N Y+ +D+ + M + F LGD++ V + + DL T I
Sbjct: 683 LHVTELGNDYFNYDKARHEMLGERTGVRFRLGDRLRVKVNRVDLETSRI 731
>gi|150026517|ref|YP_001297343.1| Ribonuclease R [Flavobacterium psychrophilum JIP02/86]
gi|149773058|emb|CAL44542.1| Ribonuclease R [Flavobacterium psychrophilum JIP02/86]
Length = 724
Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats.
Identities = 236/694 (34%), Positives = 362/694 (52%), Gaps = 25/694 (3%)
Query: 18 KYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKKHRLSLPE--NSGYVKGVFRI 75
K QI++ LE K ++ I L + S I++ + L + + Y +G +
Sbjct: 29 KPFNYKQISALLEVDDTKSRNEIIKDLKILASQKKIVETEPGKYLVKGISQDYYEGKIDM 88
Query: 76 IKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHR 135
K A+ D E +FIP N+ALD D V V + ++K K EG V++++E
Sbjct: 89 TSRKTAYFVCPDFGED--VFIPTNNLNHALDKDIVKVYVYNRRKG-KRPEGEVIEVVERA 145
Query: 136 KNTVVGILEKSKNFAFV-IPTGSFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEG 194
K VG+++ KNFAFV DI+IP +KIA A D+V V I W P G
Sbjct: 146 KTDFVGVIDIQKNFAFVSTANPKMYTDIFIPLAKIAEAQQGDVVLVHIEDWPKKADSPFG 205
Query: 195 KIIKILGSSTNSKNMIDALIYREGLSEKFSNEA--MQQTKEIIKEEIDYSNRKNLTNLSI 252
+ K+LG I A++ GL +F E Q + +E + + R+++
Sbjct: 206 AVTKVLGKPGEHNTEIHAILAEYGLPSEFPVEVEIFAQKIDTSIQESEIAKRRDMRQTLT 265
Query: 253 ITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDR 312
TID DAKD DDA+ +KLENGNY++ + IADVSHY+++ T+LD EA R SVYLVDR
Sbjct: 266 FTIDPKDAKDFDDALSFKKLENGNYEIGIHIADVSHYLQEGTILDDEAYQRATSVYLVDR 325
Query: 313 VLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNA 372
V+PM P+ +SN CSL EEK TFS EID K V+N ++VI S R Y++
Sbjct: 326 VVPMLPEVLSNFACSLRPNEEKYTFSAIFEIDEKATVINQWFGRTVIDSNQRFAYEEAQY 385
Query: 373 ILDGDKDLI--------NEY---SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVI 421
I++ + I + Y +I ++ EL+KI+R K+ G+I F+ E+K
Sbjct: 386 IIETKDNTIPVDISITGSSYIVSDEIVAATLKLDELAKIMRRKRMNDGAISFDKVEVKFN 445
Query: 422 LDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVT 481
L +D E V K + +IE+FM+ AN VAE I + IYR H++P+ +K+
Sbjct: 446 LSQDGEP-EGVFFKVSKDANHLIEEFMLLANRKVAEYIGKQKKTFIYRIHDEPNEDKLFA 504
Query: 482 LNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHF 541
+ +++KFGYKI K ++ + L+ +R + +A+Y+ E+I H+
Sbjct: 505 MQAVIAKFGYKIDFRGGEISKSLNALMAEVNGTKEQNLIDTLAIRTMSKAKYSTENIGHY 564
Query: 542 GLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAE 601
GLA +Y+HFTSPIRRY D+MVHR+L +D K + + QH S E +A AE
Sbjct: 565 GLAFDYYSHFTSPIRRYPDVMVHRLLQFYLDGG-KSVDQETYETKCQHTSNMESLATNAE 623
Query: 602 DESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDI---TTAINYYAFDE 658
+S++ V+YMQ + +++G + I+ E E+ +C + +YY FDE
Sbjct: 624 RDSIKYMQVKYMQNHQDQEFLGVISGVTEWGIYVEIIEN-KCEGMVRIRDIKDDYYTFDE 682
Query: 659 ENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
+ Y + S + LGD+V V +K ADL+ ++
Sbjct: 683 KQYALVGEISKSLLQLGDQVWVKVKNADLVKKQL 716
>gi|120437635|ref|YP_863321.1| ribonuclease R [Gramella forsetii KT0803]
gi|117579785|emb|CAL68254.1| ribonuclease R [Gramella forsetii KT0803]
Length = 732
Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats.
Identities = 229/655 (34%), Positives = 356/655 (54%), Gaps = 30/655 (4%)
Query: 56 KKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEIT 115
++ + + N Y GV + + +V E E + IFI ++ N A DGDTV + +
Sbjct: 68 ERGKFKIESNKNYYTGVLDLTTKGYGYVMVE--EFADDIFIANKDLNTAFDGDTVEIYVF 125
Query: 116 EKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFV-IPTGSFGKDIYIPNSKIANADN 174
+++ K +EG + KII+ ++ VG L++ K+F FV I S D +IP +K+ A+N
Sbjct: 126 NRRRR-KRSEGEITKIIKRKRTEFVGTLQQKKDFGFVVIDDKSMHTDFFIPGNKLNGAEN 184
Query: 175 KDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE----AMQQ 230
D V VE W P GKI ++LG+ I +++ + GL F E A +
Sbjct: 185 GDKVVVEFEEWPKKADSPLGKITRVLGTPGEHHTEIHSILAQYGLPHDFPEEVEEFANKI 244
Query: 231 TKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYV 290
I KEEI S R+++ ++ TID DAKD DDA+ EKL+NGNY++ + IADVSHY+
Sbjct: 245 DTSINKEEI--SKRRDMRDVLTFTIDPKDAKDFDDALSFEKLKNGNYEIGIHIADVSHYL 302
Query: 291 KKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVV 350
+ T+LD EA R SVYLVDRV+PM P+ +SN CSL KEEK TFS EID V
Sbjct: 303 QPGTILDEEAYERATSVYLVDRVVPMLPEILSNNACSLRPKEEKFTFSAVFEIDDNATVK 362
Query: 351 NYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDI----YEMLKQMLE-------LSK 399
N ++V S R Y++ IL+ I + I Y + ++E L+K
Sbjct: 363 NQWFGRTVTYSDERFAYEEAQHILETGTGTIPDDVSIRNHAYSVRGALIEAVVTLNTLAK 422
Query: 400 ILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERI 459
+R ++ G+I F+ E+K L+EDNN V V K + K+IE+FM+ AN VAE I
Sbjct: 423 KMRTRRMKDGAISFDKVEVKFNLNEDNNPV-GVFFKTAKDANKLIEEFMLLANRKVAEYI 481
Query: 460 --YWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFD-NLHPKQFQEIIERSKDKET 516
+ +YR H++PD +K+ +L I+ +FG+K+ D + +++E + ++
Sbjct: 482 GKQSPKKTFVYRNHDEPDDQKLASLQTIVGRFGHKLNLKDRSSTTSSLNKLLEDVQGRKE 541
Query: 517 SMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIK 576
+V +R + +A Y E I H+GLA +YTHFTSPIRRY D+MVHR+L +D + K
Sbjct: 542 QNMVDTLAIRTMSKAYYGTESIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDGA-K 600
Query: 577 PFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE 636
E + + H S+ E +A AE +S++ V++MQ E +++G + IF E
Sbjct: 601 SASEEEYETKCHHSSEMENLATNAERDSIKYMQVKFMQDHENEEFLGVISGVTEWGIFVE 660
Query: 637 TDEHIECSWDI---TTAINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLL 688
E+ +C I ++Y F+ + + + + + + LGD+V V +K ADL+
Sbjct: 661 IVEN-KCEGMIRLRDMNDDHYEFNADEFSVVGKRTGQTYTLGDEVYVKVKNADLI 714
>gi|156972465|ref|YP_001443372.1| hypothetical protein VIBHAR_00085 [Vibrio harveyi ATCC BAA-1116]
gi|156524059|gb|ABU69145.1| hypothetical protein VIBHAR_00085 [Vibrio harveyi ATCC BAA-1116]
Length = 830
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 221/657 (33%), Positives = 347/657 (52%), Gaps = 22/657 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE VKG K+ +V E S K+ I +P + + + GD
Sbjct: 70 GQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDNDIVLPHHQMKHIIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ T+ K + EGR+V+++E R +VG +++V+P S +DI IPN
Sbjct: 130 YVLVQPTDNSKRGR-REGRLVRVLEERNTQIVGRFFLEYGYSYVVPDDSRISQDILIPNE 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A A ++V +EIT G R GK++++LG + I + + EA
Sbjct: 189 HKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHDWP-EA 247
Query: 228 MQQTKEIIKEEIDYS---NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ + E + EE+ R +L +L ++TIDG DA+D DDAVY EK ++G ++L VAIA
Sbjct: 248 VDKQIENLGEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKKSGGWRLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ ++ LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 308 DVSYYVRTDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
G + Y+ Y++V+ S R+TY V AIL+GD++L Y + L+++ + KIL+
Sbjct: 368 DTGKLSGYKHYEAVMNSHARLTYNKVGAILEGDEELRMRYHAVVPHLEELHAMYKILKEA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+I+FE E K I + D K+E + R + KIIE+ MI AN A + +
Sbjct: 428 RDNRGAIEFETVEAKFIFNSD-RKIESIEPVIRNDAHKIIEECMILANIASASYVEKAKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR HE P ++ + LS+ G + P + +++++ +++ L+ +
Sbjct: 487 PALYRVHESPGELRLQGFRDFLSELGLDLKGGLEPSPTDYADLVKQIAERQDKELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP 577
LR++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I + P
Sbjct: 547 LRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQDRWTP 606
Query: 578 -----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKK 632
+ D+D + S TER A A E EYMQ VG+ L+ ++
Sbjct: 607 TGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELDGVIANVTSFG 666
Query: 633 IFFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F T+ HI+ I+T N YY FD + ++ LGD V V + +L
Sbjct: 667 FFVRLTELHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNL 723
>gi|46133164|ref|ZP_00156716.2| COG0557: Exoribonuclease R [Haemophilus influenzae R2866]
gi|145638335|ref|ZP_01793945.1| hypothetical protein CGSHiII_06174 [Haemophilus influenzae PittII]
gi|145272664|gb|EDK12571.1| hypothetical protein CGSHiII_06174 [Haemophilus influenzae PittII]
Length = 782
Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats.
Identities = 220/656 (33%), Positives = 341/656 (51%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F +V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDILHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG +++Y Y++V+ S R+TY V +L+GD++L YS + L+ + +L + L
Sbjct: 368 AKGKLIDYRFYEAVMNSHARLTYTKVAKMLEGDEELRARYSTLVPHLEDLYKLYQALLGA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VG + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDK+ + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKIRIKVEAVHL 722
>gi|71733290|ref|YP_272874.1| ribonuclease R [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71553843|gb|AAZ33054.1| ribonuclease R [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 877
Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats.
Identities = 208/646 (32%), Positives = 340/646 (52%), Gaps = 39/646 (6%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D + +F+ + DGD L ++ + + EG +V++I
Sbjct: 97 RDGFGFLVPDDGSDD--LFMSPAQMRLVFDGDRALARVSGLDRRGR-REGVIVEVISRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
T+VG + FV+P +++ + + NA V V+IT W +P+G
Sbjct: 154 ETIVGRYFEESGIGFVVPDNPKIQQEVLVTPGRNNNAKIGQFVEVKITHWPTPRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSII 253
+++++G+ ID + + + +++ ++ E E D NR +L +L +
Sbjct: 214 VVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEVEEKDKENRVDLRHLPFV 273
Query: 254 TIDGADAKDLDDAVYVE------KLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSV 307
TIDG DA+D DDAVY E +L +G +KL VAIADVS YVK + LD E++ RGNSV
Sbjct: 274 TIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLYVAIADVSSYVKIGSALDAESQVRGNSV 333
Query: 308 YLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTY 367
Y +RV+PM P+++SNG+CSLN ++L CEM I G++ +Y Y+ +I S R+TY
Sbjct: 334 YFPERVVPMLPEQLSNGLCSLNPHVDRLAMVCEMTISKTGEMTDYVFYEGIIHSHARLTY 393
Query: 368 KDVNAILDGD-----KDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVIL 422
V+ IL+ K L EY D+ LKQ+ + K+L + RG+IDFE E ++I
Sbjct: 394 NKVSTILEQPKTAEAKSLRGEYGDVVPHLKQLYAMYKVLLGARHVRGAIDFETQETRIIF 453
Query: 423 DEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTL 482
+ K+ ++ R + K+IE+ M+AAN A+ + E+ ++YR H+ P E++ L
Sbjct: 454 GSE-RKIAEIRPTTRNDAHKLIEECMLAANVATAQFLKKHEIPALYRVHDGPPPERLEKL 512
Query: 483 NEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHF 541
L + G + + PK +Q ++E +D+ L+ +LR+L QA Y+ ++ HF
Sbjct: 513 RAFLGELGLTLHKGKEGPTPKDYQALLETVRDRPDYHLIQTVMLRSLSQAVYSSDNNGHF 572
Query: 542 GLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEADL 583
GL YTHFTSPIRRY DL+ HR + S I + I P+ +A L
Sbjct: 573 GLNYEAYTHFTSPIRRYPDLLTHRAIRSVIRSKQDTPHVRRAGAATIPKARIYPYDDALL 632
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIE 642
D++ + S +ER A +A + V EYM+ RVGE+ ++T +F E TD ++E
Sbjct: 633 DQLGEQCSMSERRADEATRDVVNWLKCEYMKDRVGESFPGVITAVTGFGLFVELTDIYVE 692
Query: 643 CSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+T +YY FD ++ + + + F LGD V+V + + DL
Sbjct: 693 GLVHVTALPGDYYHFDPLHHRLAGERTGRNFRLGDSVEVRVMRVDL 738
>gi|126662735|ref|ZP_01733734.1| ribonuclease R [Flavobacteria bacterium BAL38]
gi|126626114|gb|EAZ96803.1| ribonuclease R [Flavobacteria bacterium BAL38]
Length = 725
Score = 331 bits (849), Expect = 8e-89, Method: Composition-based stats.
Identities = 238/696 (34%), Positives = 378/696 (54%), Gaps = 29/696 (4%)
Query: 18 KYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMDKK-HRLSLPENSGYVKGVFRII 76
K QI + LE + K ++ I L + + D I + + + + S Y +GV +
Sbjct: 29 KSFNYKQIAAVLELNDTKSRNEIIRDLKILKAQDKIHETEIGKYQIISKSEYYEGVIDMT 88
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
K + ++ E+ +F+P N+ALDGD V I ++ S K E V++++E +K
Sbjct: 89 SRKNGYFVCDELEDD--VFVPFINLNHALDGDKVKAYIYNRRSSRK-PEAEVLEVLERKK 145
Query: 137 NTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
+ VG+++ KNFAFV T + DI+IP +KI +A++ D+V V + W P G
Sbjct: 146 SEFVGVIDIQKNFAFVTTTNAKMYTDIFIPKNKINDAEHGDVVLVTLEDWPKKADSPFGS 205
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNE----AMQQTKEIIKEEIDYSNRKNLTNLS 251
+IK+LG I A++ GL F E A + I +EEI R+++ ++
Sbjct: 206 VIKVLGKPGEHNTEIHAILAEYGLPYDFPIEVEAYANKIDTSITEEEI--KKRRDMRDVL 263
Query: 252 IITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVD 311
TID DAKD DDA+ + LENGNY++ V IADVSHY+++ T+LD EA +R SVYLVD
Sbjct: 264 TFTIDPKDAKDFDDALSFQILENGNYEIGVHIADVSHYLQEGTILDEEAYNRATSVYLVD 323
Query: 312 RVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVN 371
RV+PM P+ +SN CSL EEK TFS +++ K +V++ ++V S R Y++
Sbjct: 324 RVVPMLPEVLSNFACSLRPHEEKYTFSAVFQLNNKAEVLDAWFGRTVTYSDQRFAYEEAQ 383
Query: 372 AILDGDKDLI--------NEY---SDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
I++ D+I EY I + +M EL+KILR K+ G+I F+ E+K
Sbjct: 384 NIIETKSDVIPAEISLTRKEYIVPKPIVDATLKMDELAKILRRKRMAAGAISFDKVEVKF 443
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
L+E+ + V K + +IE+FM+ AN VAE I + IYR H++P+ +K++
Sbjct: 444 NLNEEAEPI-GVYFKQSKDANHLIEEFMLLANRKVAEFIGKQKKTFIYRIHDEPNEDKLI 502
Query: 481 TLNEILSKFGYKIPNFDNLH-PKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIS 539
L +++KFGY I + ++E + K+ LV +R++ +A Y+ E+I
Sbjct: 503 NLQTVIAKFGYSINFRSKIDISSSLNNLLEEVQGKKEQNLVDTLTIRSMSKAAYSTENIG 562
Query: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMK 599
H+GLA +Y+HFTSPIRRY D+M HR+L ID K E +E H S+ E +A +
Sbjct: 563 HYGLAFDYYSHFTSPIRRYPDVMAHRLLQFYIDGG-KSVDEEVYEEKCVHSSQMESLAAQ 621
Query: 600 AEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDI---TTAINYYAF 656
AE +SV+ V+YMQ E +++G + I+ E E+ +C + +YY F
Sbjct: 622 AERDSVKYMQVKYMQDHKDEEFLGVISGVTEWGIYVEIIEN-KCEGMVRIREIRDDYYTF 680
Query: 657 DEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
D++ Y + S + LGD++ V +K ADL+ ++
Sbjct: 681 DDKQYALVGEVSKNILQLGDEIYVKVKNADLVKKQL 716
>gi|152986148|ref|YP_001350985.1| ribonuclease R [Pseudomonas aeruginosa PA7]
gi|150961306|gb|ABR83331.1| ribonuclease R [Pseudomonas aeruginosa PA7]
Length = 906
Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats.
Identities = 208/667 (31%), Positives = 338/667 (50%), Gaps = 33/667 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G LI ++ + + ++G ++ F F+ +D + +F+ + DGD
Sbjct: 70 GQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDD--LFLSPTQMRLVFDGDR 127
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVG-ILEKSKNFAFVIPTGSFGKDIYIPNSK 168
L ++ + + EG++V++IE VVG E+S V +++ IP K
Sbjct: 128 ALARVSGHDRRGR-REGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEVLIPPGK 186
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + V V I W R+ +G+I+++LG I+ + + +
Sbjct: 187 TGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHVWPAAVE 246
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ + E E D R +L + +TIDG DA+D DDAVY E G ++L VAIADV
Sbjct: 247 KEAARLKPEVAEKDKQKRIDLRQVPFVTIDGEDARDFDDAVYAESRRGGGWRLFVAIADV 306
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYVK + LD EA RGNSVY +RV+PM P+ +SNG+CSLN ++L CEM +
Sbjct: 307 SHYVKVGSALDEEAARRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCEMTLSKA 366
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGD-----KDLINEYSDIYEMLKQMLELSKIL 401
G + Y+ Y++VI S R+TY V+ +L+ ++L + + L+Q+ L K L
Sbjct: 367 GKLTGYQFYEAVIHSHARLTYTKVSQLLERPDSVEAENLRQQLPGVVPHLQQLYALYKAL 426
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
+ RG+IDFE E +++ D K+ ++ R + ++IE+ M+ AN A +
Sbjct: 427 LAGRHVRGAIDFETQETRIVFGAD-RKISEIRPTQRNDAHRLIEECMLCANVATARFLQK 485
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNL-HPKQFQEIIERSKDKETSMLV 520
+ S+YR H+ P +EK+ L + L + G + P +QE++E+ +D+ L+
Sbjct: 486 HGIPSLYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIRDRADFRLI 545
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIK---- 576
+LR+L QA Y+ ++ HFGL YTHFTSPIRRY DL+VHR + S I + ++
Sbjct: 546 QTVMLRSLSQAMYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKVETPHV 605
Query: 577 --------------PFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
P+ E LD++ + S TER A +A + EYM++RVGET
Sbjct: 606 QRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERVGETFP 665
Query: 623 VMVTGFAQKKIFFE-TDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++T +F E TD +E +T +YY FD ++ + + + F LGD +V
Sbjct: 666 GVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLGDTTEV 725
Query: 681 VLKKADL 687
V+ + DL
Sbjct: 726 VVARVDL 732
>gi|91215345|ref|ZP_01252316.1| putative exoribonuclease [Psychroflexus torquis ATCC 700755]
gi|91186297|gb|EAS72669.1| putative exoribonuclease [Psychroflexus torquis ATCC 700755]
Length = 741
Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats.
Identities = 225/634 (35%), Positives = 366/634 (57%), Gaps = 30/634 (4%)
Query: 81 AFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVV 140
A+V ED E+ ++I + N+ALDGD V + + +K++ K +EG V+ I+ K V
Sbjct: 99 AYVVIEDMEQD--VYITNKNLNHALDGDEVKIYVFKKREKSK-SEGEVISILTRYKTDFV 155
Query: 141 GILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKI 199
G+L K + F FV+ S DI++PN K+ A++ LV V I W D D P+G+I ++
Sbjct: 156 GVLHKQEKFGFVVVGNSKMYTDIFVPNDKMHGAEDGLLVKVRIVQWKDKDDSPKGEITEV 215
Query: 200 LGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEIDYS---NRKNLTNLSIITID 256
LG + A++ GL E+F E +++ I +I S R++L + TID
Sbjct: 216 LGVPGEHNTEMHAILAGYGLPEQFPPE-VEEFANGIDTKIHSSEIKKRRDLRDTLTFTID 274
Query: 257 GADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPM 316
ADAKD DDA+ +K++NGNY++ + IADV+HYV+ T+LD EA +R S+YLVDRV+PM
Sbjct: 275 PADAKDFDDALSFKKMDNGNYEIGIHIADVAHYVQPGTILDDEAYNRATSIYLVDRVVPM 334
Query: 317 FPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDG 376
P+ +SNG CSL EEK TFS E+ +GDV + ++V S R Y++ ++D
Sbjct: 335 LPEILSNGACSLRPNEEKYTFSALFELTPRGDVKSEWFGRTVTYSDARFAYEEAQFVIDS 394
Query: 377 -DKDLINEYS----------DIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDED 425
DK + ++ S ++ + + M +LSKI+R ++ +G+I F+ E+K LDED
Sbjct: 395 KDKHIPSDISLSKKAYDIQPELVDAITTMNDLSKIMRKERMNQGAISFDKVEVKFHLDED 454
Query: 426 NNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS--IYRTHEKPDREKIVTLN 483
NN + V +K + K+IE+FM+ AN V+E I + ++R H++P +++ LN
Sbjct: 455 NNP-KGVYVKTSQDANKLIEEFMLLANRKVSEFIGKRKPPKTFVFRCHDEPQPDRLEALN 513
Query: 484 EILSKFGYKIPNFDNLH--PKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHF 541
++SKFGY + +F N ++E K K+ LV +R + +A Y+ ++I H+
Sbjct: 514 TVVSKFGYSL-DFKNKKNIANTLNGLLEDVKGKKEQNLVDTLTIRTMSKAYYSTQNIGHY 572
Query: 542 GLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAE 601
GLA +Y+HFTSPIRRY D+M HR+L ID + E + +E +H S+ E++A AE
Sbjct: 573 GLAFDYYSHFTSPIRRYPDVMAHRLLQRYIDKE-QSASETEYEEKCKHSSEMEKLATNAE 631
Query: 602 DESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDI---TTAINYYAFDE 658
+S++ V+Y+Q + +++G IF E E+ +C + + ++Y F+E
Sbjct: 632 RDSIKYMQVKYIQDQEETEYKGVISGVTDFGIFIEISEN-KCEGMVRLKDISDDHYDFNE 690
Query: 659 ENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEI 692
E+Y + + K++ LG++V V +KKADL+ I
Sbjct: 691 EHYAIIGRRTKKMYQLGEEVYVRVKKADLVKRTI 724
>gi|38704239|ref|NP_313182.2| hypothetical protein ECs5155 [Escherichia coli O157:H7 str. Sakai]
Length = 813
Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats.
Identities = 206/655 (31%), Positives = 347/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 123
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 124 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 243 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 302 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 422 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DLM+HR + +T +
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLMLHRAIKYLLAKEQGHQGNTTETG 600
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVISSVTGFGFF 660
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715
>gi|16272801|ref|NP_439021.1| virulence-associated protein [Haemophilus influenzae Rd KW20]
gi|1174933|sp|P44907|RNR_HAEIN Ribonuclease R (RNase R) (VacB protein homolog)
gi|1573876|gb|AAC22520.1| virulence-associated protein (vacB) [Haemophilus influenzae Rd
KW20]
Length = 782
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 220/656 (33%), Positives = 340/656 (51%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVMHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F +V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDILHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L NL ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + +Y Y++V+ S R+TY V +L+GD++L YS + L+++ +L + L
Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLSA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ M AN A + +
Sbjct: 428 RHQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAXKIIEECMXLANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ VG + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|91227444|ref|ZP_01261808.1| ribonuclease R [Vibrio alginolyticus 12G01]
gi|91188594|gb|EAS74885.1| ribonuclease R [Vibrio alginolyticus 12G01]
Length = 835
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 219/657 (33%), Positives = 348/657 (52%), Gaps = 22/657 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE VKG ++ +V E S K+ I +P + N + GD
Sbjct: 70 GQLVFTRRQCYALPEKLEMVKGYVIGHRDGHGWVRPEGSVGKDDDILLPHHQMKNIIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ T+ K + EGR+V+++E R + +VG +++V+P S +DI IPN
Sbjct: 130 FVLVQPTDNSKRGR-REGRLVRVLEERNDQIVGRFFLEYGYSYVVPDDSRISQDILIPNE 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A A ++V +EIT G R GK++++LG + I + ++ EA
Sbjct: 189 HKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWP-EA 247
Query: 228 MQQTKEIIKEEIDYS---NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ + E + EE+ R +L +L ++TIDG DA+D DDAVY EK + G ++L VAIA
Sbjct: 248 VDKQIENLGEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKNKEGGWRLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ ++ LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 308 DVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
G + Y+ Y++V+ S R+TY V+AIL+GD++L Y + L+++ ++ K+L+
Sbjct: 368 DTGKLSGYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHKMYKVLKEA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+I+FE E K I + + K+E + R + KIIE+ MI AN A + +
Sbjct: 428 RDQRGAIEFETVETKFIFNAE-RKIESIEPVIRNDAHKIIEECMILANIASASLVEKTKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR HE P ++ + LS+ G ++ P + ++ + ++ L+ +
Sbjct: 487 PALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQISGRQDQELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP 577
LR++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I + P
Sbjct: 547 LRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQDRWTP 606
Query: 578 -----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKK 632
+ D+D + S TER A A + EYMQ VG+ L+ ++
Sbjct: 607 TGGYHYSFDDMDFYGEQCSMTERRADDATRDVADWLKCEYMQDHVGDELDGVIANVTSFG 666
Query: 633 IFFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F TD HI+ I+T N YY FD + ++ LGD V V + +L
Sbjct: 667 FFVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNL 723
>gi|15804768|ref|NP_290809.1| putative enzyme [Escherichia coli O157:H7 EDL933]
gi|12519167|gb|AAG59375.1|AE005651_4 putative enzyme [Escherichia coli O157:H7 EDL933]
gi|13364632|dbj|BAB38578.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
Length = 827
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 206/655 (31%), Positives = 347/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DLM+HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLMLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|28872049|ref|NP_794668.1| ribonuclease R [Pseudomonas syringae pv. tomato str. DC3000]
gi|28855302|gb|AAO58363.1| ribonuclease R [Pseudomonas syringae pv. tomato str. DC3000]
Length = 877
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 211/648 (32%), Positives = 340/648 (52%), Gaps = 43/648 (6%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D + +F+ + DGD L ++ + + EG +V++I
Sbjct: 97 RDGFGFLVPDDGSDD--LFMSPAQMRLVFDGDRALARVSGLDRRGR-REGVIVEVISRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
T+VG + FV+P +++ + + ++A V V+IT W +P+G
Sbjct: 154 ETIVGRYFEESGIGFVVPDNPKIQQEVLVTPGRNSSAKIGQFVEVKITHWPTPRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLS----EKFSNEAMQQTKEIIKEEIDYSNRKNLTNLS 251
+++++G+ ID + + E EA + E+ EE D NR +L +L
Sbjct: 214 VVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLKEAAKLKPEV--EEKDKENRVDLRHLP 271
Query: 252 IITIDGADAKDLDDAVYVE------KLENGNYKLIVAIADVSHYVKKETVLDLEARHRGN 305
+TIDG DA+D DDAVY E +L +G +KL VAIADVS YVK + LD E++ RGN
Sbjct: 272 FVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLYVAIADVSSYVKIGSALDAESQVRGN 331
Query: 306 SVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRM 365
SVY +RV+PM P+++SNG+CSLN ++L CEM I G++ +Y Y+ +I S R+
Sbjct: 332 SVYFPERVVPMLPEQLSNGLCSLNPHVDRLAMVCEMTISKTGEMTDYVFYEGIIHSHARL 391
Query: 366 TYKDVNAILDGD-----KDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
TY V+ IL+ K L EY D+ LKQ+ + K+L + RG+IDFE E ++
Sbjct: 392 TYNKVSTILEQPKTAEAKSLRGEYGDVVPHLKQLYAMYKVLLGARHVRGAIDFETQETRI 451
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIV 480
I + K+ ++ R + K+IE+ M+AAN A+ + E+ ++YR H+ P E++
Sbjct: 452 IFGSE-RKIAEIRPTTRNDAHKLIEECMLAANVATAQFLKKHEIPALYRVHDGPPPERLE 510
Query: 481 TLNEILSKFGYKI-PNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDIS 539
L + G + D PK +Q ++E +D+ L+ +LR+L QA Y+ ++
Sbjct: 511 KPRAFLGELGLSLHKGKDGPTPKDYQALLETVRDRPDYHLIQTVMLRSLSQAVYSSDNNG 570
Query: 540 HFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEA 581
HFGL YTHFTSPIRRY DL+ HR + S I + I P+ +A
Sbjct: 571 HFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIRSKQDTPHVRRAGAATIPKARIYPYDDA 630
Query: 582 DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEH 640
LD++ + S +ER A +A + V EYM+ RVGE+ ++T +F E TD +
Sbjct: 631 LLDQLGEQCSMSERRADEATRDVVNWLKCEYMKDRVGESFPGVITAVTGFGLFVELTDIY 690
Query: 641 IECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
+E +T +YY FD ++ + + + F LGD V+V + + DL
Sbjct: 691 VEGLVHVTALPGDYYHFDPLHHRLAGERTGRNFRLGDTVEVRVMRVDL 738
>gi|119471827|ref|ZP_01614160.1| RNase R, 3'-5' exoribonuclease [Alteromonadales bacterium TW-7]
gi|119445317|gb|EAW26606.1| RNase R, 3'-5' exoribonuclease [Alteromonadales bacterium TW-7]
Length = 813
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 213/661 (32%), Positives = 348/661 (52%), Gaps = 25/661 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L +K +L + +G KG ++ F F++ E E + FI K + N L GD
Sbjct: 67 GQLYFNKFKCYALIDEAGLTKGKVIGHRDGFGFLEVEG--ESKDWFIAKHQMNMVLHGDI 124
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSK 168
VL + T K+ S + R++K++ + + +VG A V+ +DI I
Sbjct: 125 VLAKGT-KRGSGSKCDARIIKVLTNERAPIVGRYFVEHGVAVVVAEDPRITQDIMILPGN 183
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + +V V+IT + GK++ +LG I+ + + + E
Sbjct: 184 ENGARHNQMVQVKITQNPSRNMNAVGKVVDVLGEHLAPGMEIEVALRNHDIPHVWPEEVD 243
Query: 229 QQTKEI--IKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
Q + E+ D R +L +L ++TIDG DA+D DDAVY E ++G ++L VAIADV
Sbjct: 244 AQVAHLGEFVEDADKQGRVDLRDLPLVTIDGEDARDFDDAVYCEPKKSGGWRLWVAIADV 303
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYV T L+ EA RGNSVY ++V+PM PK +SNG+CSLN K ++L EM +
Sbjct: 304 SHYVGMNTPLNKEAIARGNSVYFPEQVIPMLPKVLSNGLCSLNPKVDRLCMVAEMTVSAA 363
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKF 406
G + Y+ Y++V+ S R+TY VNAIL D+ L +EY+ + L + ++ L+ +
Sbjct: 364 GKLSGYKFYEAVMNSHARLTYTKVNAILQNDEKLRDEYAAVVPHLTDLQQMYMALKSARQ 423
Query: 407 TRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS 466
RG+I+FE E + + + + K+E ++ R + K+IE+ MI AN + A+ + E ++
Sbjct: 424 ERGAIEFETLETRFVFNA-HRKIESIVPVIRNDAHKLIEECMILANVSAAKLLEKHEASA 482
Query: 467 IYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILR 526
+YR H++PD EK+ + L++ G + D PK+ +I+ + ++ + L+ +LR
Sbjct: 483 LYRVHDEPDSEKLGNFTQFLTELGIQSTLGDEPTPKEITQILAKLGERPEAELIQTMLLR 542
Query: 527 ALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTID------NSIKPFKE 580
++KQA Y ++I HFGLA S Y HFTSPIRRY DL+VHR + + + + + +
Sbjct: 543 SMKQAVYQPDNIGHFGLALSAYAHFTSPIRRYPDLVVHRAIKAVLKAQGQQTSGAYAYTD 602
Query: 581 ADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE- 639
++D++ + S TER A A E E+MQ VG+ N +++ +F D+
Sbjct: 603 DEVDQLGEQCSTTERRADDATREVADWLKCEFMQDHVGDEFNGVISSVTNFGLFIRLDDL 662
Query: 640 HIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLD 698
I+ +T ++A D +C+ S V+ LGDKV T+++A V LD
Sbjct: 663 QIDGLIHVTNLGDEFFAHDAAKHCLIGEHSHTVYRLGDKV----------TVQVASVSLD 712
Query: 699 D 699
D
Sbjct: 713 D 713
>gi|86148226|ref|ZP_01066523.1| Exoribonuclease R [Vibrio sp. MED222]
gi|85833996|gb|EAQ52157.1| Exoribonuclease R [Vibrio sp. MED222]
Length = 833
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 226/666 (33%), Positives = 349/666 (52%), Gaps = 30/666 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G LI ++ +LPE +KG K+ +V + S K+ I +P + + GD
Sbjct: 80 GQLIFTRRQCYALPEKMELIKGFVIGHKDGHGWVRPDGSVGKDNDIVLPHHQMKTIMHGD 139
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ T+ K + EGR+V+++E RK +VG ++V+ S DI IP
Sbjct: 140 YVLVQPTDNSKRGR-REGRLVRVLEERKTPLVGRFFLEYGHSYVVADDSRISHDIQIPTE 198
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A ++V +EIT G R GK+ ++LG + I + +++
Sbjct: 199 HKGGARMGNVVVIEITDRGGRSRNMMGKVTEVLGENMAPGMETQIAIRTHQIPQEWPEAV 258
Query: 228 MQQTK---EIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+Q + E + EE R +L L ++TIDG DA+D DDAVY E + G ++L VAIA
Sbjct: 259 DKQIENLGEHVPEEAK-EGRVDLRKLPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIA 317
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ ET LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 318 DVSYYVRPETALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 377
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + Y+ Y++V+ S R+TY V AILDG+++L Y L+++ ++ K+L+
Sbjct: 378 DKGKLSGYKHYEAVMNSHARLTYNKVGAILDGNEELRERYEPEVPHLEELHKMYKVLKKT 437
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+I+FE E K I + D K++++ R + KIIE+ MI AN A + +
Sbjct: 438 RDERGAIEFETVETKFIFNAD-RKIDRIEPVIRNDAHKIIEECMILANIASASYVEKAKE 496
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H+ P E+++ LS+ G + + P + +++++ ++E L+ +
Sbjct: 497 PALYRVHDTPGEERLMGFKSFLSELGLTLEGGLSPSPVDYAQLMQQINEREDRELIQTML 556
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-----DNSIK--- 576
LR++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I NS +
Sbjct: 557 LRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNSERWTP 616
Query: 577 ----PFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN---VMVTGFA 629
+ D+D + S TER A A E EYMQ VGE ++ VTGF
Sbjct: 617 TGGYHYTFDDMDFYGEQCSMTERRADDATREVNDWLKCEYMQDHVGEVMDGVIANVTGFG 676
Query: 630 QKKIFFE--TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
FF T+ HI+ I+ N YY FD + S ++ LGD V V + +
Sbjct: 677 ----FFVRLTELHIDGLVHISALANDYYQFDAVGQRLVGESSGNIYRLGDSVKVKVSAVN 732
Query: 687 LLTLEI 692
L T +I
Sbjct: 733 LETRQI 738
>gi|145629933|ref|ZP_01785715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae 22.4-21]
gi|144984214|gb|EDJ91637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
influenzae R3021]
Length = 782
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 220/656 (33%), Positives = 341/656 (51%), Gaps = 21/656 (3%)
Query: 48 DSGDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
+ G L+ K+ R +LPE KG + F F+ + +K+ +FIP + + G
Sbjct: 72 NDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDG--KKDDLFIPNHQMQRVIHG 129
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPN 166
D VL + + + E R+V+++E RK +VG F++V+P S G+DI +PN
Sbjct: 130 DFVLAQPAGLDRRGR-REVRIVRVLESRKKQIVGRFFLENGFSYVVPDDSRIGRDILVPN 188
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A +V VE+ +P G I +ILG + ++ + + KF +
Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDIPHKFPSA 248
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ K+ +E E R +L +L ++TIDG DA+D DDAVY EK G +KL VAIA
Sbjct: 249 VEKYVKKFTEEVPEEAKKGRVDLRHLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ + LD+EA +RGNSVY +RV+PM P+ +SNG+CSLN + ++L CEM+I
Sbjct: 308 DVSYYVRLRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + +Y Y++V+ S R+TY V +L+GD++L Y + L+++ L K L
Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYQGLIPHLEELHHLYKALLNA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+IDFE E K I + ++E++ R + KIIE+ MI AN A + +
Sbjct: 428 RKQRGAIDFETIETKFIFNA-MGRIERIEPVVRNDAHKIIEECMILANIAAANFMEKHKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H P EK+ + LS+FG + K + ++E+ K++ L+ +
Sbjct: 487 PTLYRIHAIPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVL-----------FSTIDN 573
LR+L QA Y ++I HFGLA Y HFTSPIRRY DL +HR + T D
Sbjct: 547 LRSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDT 606
Query: 574 SIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ ++D + H S TER A A E EYMQ +GE + +++ +
Sbjct: 607 GGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHIGEEFSGVISSVTGFGL 666
Query: 634 FFETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F D+ I+ I+T N YY FD + +S + LGDKV + ++ L
Sbjct: 667 FVRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHL 722
>gi|116184713|ref|ZP_01474641.1| hypothetical protein VEx2w_02002772 [Vibrio sp. Ex25]
gi|151937410|gb|EDN56270.1| ribonuclease R [Vibrio sp. Ex25]
Length = 834
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 219/657 (33%), Positives = 347/657 (52%), Gaps = 22/657 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE VKG ++ +V E S K+ I +P + N + GD
Sbjct: 70 GQLVFTRRQCYALPEKLEMVKGYVIGHRDGHGWVRPEGSVGKDDDILLPHHQMKNIIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ T+ K + EGR+V+++E R + +VG +++V+P S +DI IPN
Sbjct: 130 FVLVQPTDNSKRGR-REGRLVRVLEERNDQIVGRFFLEYGYSYVVPDDSRISQDILIPNE 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A A ++V +EIT G R GK++++LG + I + ++ EA
Sbjct: 189 HKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWP-EA 247
Query: 228 MQQTKEIIKEEIDYS---NRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+ + E + EE+ R +L L ++TIDG DA+D DDAVY EK + G ++L VAIA
Sbjct: 248 VDKQIENLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVYCEKNKEGGWRLWVAIA 307
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ ++ LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 308 DVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 367
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
G + Y+ Y++V+ S R+TY V+AIL+GD++L Y + L+++ ++ K+L+
Sbjct: 368 ETGKLSGYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHKMYKVLKEA 427
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+I+FE E K I + + K+E + R + KIIE+ MI AN A + +
Sbjct: 428 RDQRGAIEFETVETKFIFNAE-RKIESIEPVIRNDAHKIIEECMILANIASASLVEKAKE 486
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR HE P ++ + LS+ G ++ P + ++ + ++ L+ +
Sbjct: 487 PALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQISGRQDQELIQTML 546
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP 577
LR++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I + P
Sbjct: 547 LRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQDRWTP 606
Query: 578 -----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKK 632
+ D+D + S TER A A + EYMQ VG+ L+ ++
Sbjct: 607 TGGYHYSFDDMDFYGEQCSMTERRADDATRDVADWLKCEYMQDHVGDELDGVIANVTSFG 666
Query: 633 IFFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F TD HI+ I+T N YY FD + ++ LGD V V + +L
Sbjct: 667 FFVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNL 723
>gi|88711638|ref|ZP_01105726.1| putative exoribonuclease [Flavobacteriales bacterium HTCC2170]
gi|88710579|gb|EAR02811.1| putative exoribonuclease [Flavobacteriales bacterium HTCC2170]
Length = 729
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 238/695 (34%), Positives = 374/695 (53%), Gaps = 32/695 (4%)
Query: 18 KYLTLDQITSFLEWSPKKKKDNKIIILSWIDSGDLIMD--KKHRLSLPENSGYVKGVFRI 75
K T QI + + + +++ I L+ + I++ + H + Y G+ I
Sbjct: 30 KSFTYKQIAARIGVNDANERNQLIKKLTELKESKRILEETRGHFKATASTKTYHTGIVDI 89
Query: 76 IKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHR 135
A++ E +E +F+P + A DTV V I ++ K EG + K+++
Sbjct: 90 TGRGNAYIVIEGMDED--VFVPFNKLRKAFHKDTVEVYIFPRRNGKK-LEGEITKVVKRN 146
Query: 136 KNTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEG 194
K T VGI++ K FAF+ P+ DI++P KI A++ D V VEIT W D P G
Sbjct: 147 KTTFVGIVDMQKTFAFIRPSDFRMYTDIFVPKEKIGKAEDGDKVVVEITEWPDKASSPFG 206
Query: 195 KIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEI---IKEEIDYSNRKNLTNLS 251
I ILG I +++ GL +F E Q + IK E + + R+++ +
Sbjct: 207 TITSILGKPGEHHTEIHSILAEYGLPYEFPYEVEQYANTLDTSIKAE-EIAKRRDMREVL 265
Query: 252 IITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVD 311
TID DAKD DDA+ E LENGNY++ + IADVSHY+K +T+LD EA R SVYLVD
Sbjct: 266 TFTIDPKDAKDFDDALSFEILENGNYEIGIHIADVSHYLKPDTILDEEAYDRATSVYLVD 325
Query: 312 RVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVN 371
RV+PM P+ +SN CSL EEK TFS E+D K + N ++VI S R Y++
Sbjct: 326 RVVPMLPEVLSNNACSLRPNEEKYTFSAIFELDDKAIIKNQWFGRTVIDSNERFAYEEAQ 385
Query: 372 AILD-GDKDLINEYS----------DIYEMLKQMLELSKILRIKKFTRGSIDFELPELKV 420
I++ G+ + NE S DI + L+KI+R K+ +G+I F+ E++
Sbjct: 386 YIIENGNGSIPNEISIRGNGYSVSEDIVNATLTLDRLAKIMRSKRMQQGAISFDKVEVRF 445
Query: 421 ILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELAS--IYRTHEKPDREK 478
L++ NN+ E V K+ + K+IE+FM+ AN VAE I + IYR H+ P+ EK
Sbjct: 446 NLNK-NNEPESVYFKEAKDANKLIEEFMLLANRKVAEFIGKQKPKKTFIYRIHDDPNEEK 504
Query: 479 IVTLNEILSKFGYKIPNFDNLH--PKQFQEIIERSKDKETSMLVHKTILRALKQARYTVE 536
++ LN I+S+FG+K+ NF + +++E K ++ LV +R++ +A YT +
Sbjct: 505 LMALNGIISRFGHKL-NFKDKKSISASLNQLLEDVKGQKEQNLVDTLAIRSMSKAIYTTD 563
Query: 537 DISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERV 596
+I H+GLA +Y+HFTSPIRRY D+MVHR+L +D K KE ++ +H S E +
Sbjct: 564 NIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQHYLDEG-KSAKEEIYEDKCKHSSDMENL 622
Query: 597 AMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDI---TTAINY 653
A AE +S++ +++MQ + +++G + I+ E E+ +C + +Y
Sbjct: 623 AANAERDSIKYMQIKFMQDHQDKEFIGVISGVTEWGIYVEIIEN-KCEGMVRIRDIKGDY 681
Query: 654 YAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLL 688
Y FDE+ Y + + + LGD+V V++K DL+
Sbjct: 682 YIFDEKQYAIVGERTKNTYQLGDEVIVMVKNTDLI 716
>gi|153004313|ref|YP_001378638.1| ribonuclease R [Anaeromyxobacter sp. Fw109-5]
gi|152027886|gb|ABS25654.1| ribonuclease R [Anaeromyxobacter sp. Fw109-5]
Length = 910
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 206/623 (33%), Positives = 333/623 (53%), Gaps = 25/623 (4%)
Query: 69 VKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRV 128
V G + ++ + FV + D + + +F+P E ALDGD V VEI + GR+
Sbjct: 97 VVGTLKKHRDGYGFVARID-RKGDDVFVPPGEAAQALDGDLVRVEIVPARGGRTA--GRL 153
Query: 129 VKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGD 187
V++IE R+ ++G +FV+P G+ + +P + A A + D+V V +
Sbjct: 154 VEVIERRRRLLIGTYHARGARSFVVPADEELGEAVPVPET--AAAQDGDVVKVALE---P 208
Query: 188 DDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKEEI---DYSNR 244
+ +G +++ +G + + + Y +G ++ F E ++ E + + D R
Sbjct: 209 GTARLQGAVVEAIGRPGEPRVEVLKVAYAKGFADVFP-EPVRAEAEATPDRVRPEDRQGR 267
Query: 245 KNLTNLSIITIDGADAKDLDDAVYVEKLE--NGNYKLIVAIADVSHYVKKETVLDLEARH 302
++LT L ++TIDG DA+D DDAV+VE+LE G Y+L+VAIADV+HYV+ LD EA
Sbjct: 268 RDLTALPLVTIDGEDARDFDDAVHVERLEGRKGLYRLVVAIADVAHYVRPGAALDAEAGR 327
Query: 303 RGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSV 362
RG SVY +VLPM P+ +SNGICSLN ++L ++ +D G+ + EVY+ V++S
Sbjct: 328 RGTSVYFPMQVLPMLPERLSNGICSLNPDVDRLCMVADLVVDEHGETRSAEVYEGVMRSA 387
Query: 363 HRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVIL 422
R TY +V ++ G + E M EL + L + RG++DF+LPE K++L
Sbjct: 388 ARCTYTEVANVVAGQS--VPGRDRFRERFLLMAELQEKLTAMRGRRGALDFDLPEAKIVL 445
Query: 423 DEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTL 482
E +V + + R +I+E+FM+AANE VA EL +IYR H+ PD EK+
Sbjct: 446 GE-GGEVVAIEKRPRNRAHRIVEEFMLAANEAVARWFGSRELPTIYRIHDVPDEEKLQAF 504
Query: 483 NEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFG 542
++ G+++P P+ ++ R + +++ +LRA+ QA Y E+I H+G
Sbjct: 505 LDLAESHGFEVPEVPG--PRALNALLGRFQGHAQQRALNQLLLRAMMQAVYATENIGHYG 562
Query: 543 LASSHYTHFTSPIRRYSDLMVHRVLFST-IDNSIKPFKE---ADLDEIAQHISKTERVAM 598
LA+ HY HFTSPIRRY DL+VHR+L +P +E A L E+A S+ ER AM
Sbjct: 563 LAAQHYLHFTSPIRRYPDLVVHRLLKEEWARRQGQPVREPSPAALAEMAAVSSERERAAM 622
Query: 599 KAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIECSWDITTAINYYAFD 657
+AE + +M+ +VGE +++ + +F E +E + D
Sbjct: 623 EAERDIAAFYAALFMKDKVGERYEGVISAVVEFGLFVELKRWFVEGLVRLEDLGGAPELD 682
Query: 658 EENYCMRDTDSDKVFYLGDKVDV 680
E + + D + + F +GD+V V
Sbjct: 683 TELHALVDRTTGRAFRVGDEVTV 705
>gi|15642594|ref|NP_232227.1| ribonuclease R [Vibrio cholerae O1 biovar eltor str. N16961]
gi|153225383|ref|ZP_01954739.1| ribonuclease R [Vibrio cholerae MAK 757]
gi|153824007|ref|ZP_01976674.1| ribonuclease R [Vibrio cholerae B33]
gi|20139355|sp|Q9KNY1|RNR_VIBCH Ribonuclease R (RNase R)
gi|9657187|gb|AAF95740.1| ribonuclease R [Vibrio cholerae O1 biovar eltor str. N16961]
gi|124117330|gb|EAY36073.1| ribonuclease R [Vibrio cholerae MAK 757]
gi|126518471|gb|EAZ75694.1| ribonuclease R [Vibrio cholerae B33]
Length = 821
Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats.
Identities = 219/656 (33%), Positives = 340/656 (51%), Gaps = 20/656 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE VKG K+ +V E S KEG I +P + + GD
Sbjct: 70 GQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ + K + EGR+V+I+E R +VG +++V+P S DI IPN
Sbjct: 130 FVLVQPSGTDKRGR-KEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPND 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A A ++V +EIT G +R GK++++LG + I + ++ E
Sbjct: 189 LRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEV 248
Query: 228 MQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ + +E E R +L L ++TIDG DA+D DDAVY E + G ++L VAIAD
Sbjct: 249 EQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIAD 308
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ +T LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 309 VSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSE 368
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y+ Y++V+ S R+TY V+ IL+GD++L Y + L+++ ++ ++L+ +
Sbjct: 369 TGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSAR 428
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+I+FE E K I + K+E + R + K+IE+ MI AN A + + A
Sbjct: 429 DERGAIEFETVETKFIFNA-QRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEA 487
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR HE P E++ + L + G + P + ++++ ++ L+ +L
Sbjct: 488 ALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLL 547
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP- 577
R++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I + P
Sbjct: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPT 607
Query: 578 ----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ D+D + S TER A A E EYMQ VGE L +V
Sbjct: 608 GGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGF 667
Query: 634 FFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F T+ HI+ I+T N YY +D + ++ LGD V V + +L
Sbjct: 668 FVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNL 723
>gi|154490007|ref|ZP_02030268.1| hypothetical protein PARMER_00236 [Parabacteroides merdae ATCC
43184]
gi|154089449|gb|EDN88493.1| hypothetical protein PARMER_00236 [Parabacteroides merdae ATCC
43184]
Length = 726
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 205/607 (33%), Positives = 352/607 (57%), Gaps = 24/607 (3%)
Query: 94 IFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVI 153
IF+ + +AL+GD V +++ K+K EG V++I+E ++ + G L+ ++ FAF+I
Sbjct: 121 IFVAERNSAHALNGDKVKIQLHAKRKG-ADPEGEVIEILESQRRLITGKLQVTRGFAFLI 179
Query: 154 PTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDA 212
+ DI+IP K+ + D V IT W ++ + P G+++ ILG++ ++ ++A
Sbjct: 180 TEDKTLANDIFIPKDKLKGGKSGDKAIVRITEWPEEAKNPLGEVVDILGTAGDNDAEMNA 239
Query: 213 LIYREGLSEKFS---NEAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYV 269
++ L K+ +A ++ + I EE + + R++ ++ TID DAKD DDA+
Sbjct: 240 ILAEFDLPYKYPANVEKAAEKISDAIPEE-EIAKREDFRGVTTFTIDPKDAKDFDDALSA 298
Query: 270 EKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLN 329
KL+NGN+++ V IADV++YVK E+++D EA R SVYLVDR +PM P+ + N ICSL
Sbjct: 299 RKLDNGNWEVGVHIADVTYYVKPESLIDREAFSRATSVYLVDRTIPMLPERLCNQICSLR 358
Query: 330 EKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYE 389
EEKL FS E++ ++ + +++IKS R TY++ A+++ + EY E
Sbjct: 359 PNEEKLCFSVIFELNKNAEIQQSHITRTIIKSDRRFTYEEAQAVIETGE---GEYK---E 412
Query: 390 MLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMI 449
+ + L++ LR ++F G+I F+ E+K +DE N K +K+ E K+IE+FM+
Sbjct: 413 EILALNGLAQKLRDRRFKDGAIAFDRYEVKFDIDE-NGKPLGTYIKESKEANKLIEEFML 471
Query: 450 AANETVAERI----YWLELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLH--PKQ 503
AN TVAE I + +YR HE+PD EK+ + +S+FGYK+ K
Sbjct: 472 LANRTVAEFIGKSKNKTKKTFVYRIHEQPDPEKLRDFSAFISRFGYKMRTEGTKTDISKG 531
Query: 504 FQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMV 563
++++ + K LV +R++++A YT ++I H+GLA +YTHFTSPIRRY D+MV
Sbjct: 532 INKLLDSVQGKPEENLVETLAIRSMQKAHYTTDNIGHYGLAMDYYTHFTSPIRRYPDMMV 591
Query: 564 HRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNV 623
HR+L + K +E +H S+ E VA AE S++ K VE+M+ ++G+ +
Sbjct: 592 HRLLERYLAGGRSVIKN-KYEEYCKHCSEMEMVASNAERSSIKYKQVEFMKDKLGQVFDG 650
Query: 624 MVTGFAQKKIFFETDEHIECSWDITTA---INYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
+V+G + ++ E +++ +C + +YY FD++NYC+ + +++ LGD + V
Sbjct: 651 VVSGVTEWGLYVELNDN-KCEGLVPIRDLDDDYYEFDDKNYCLLGRRTKRIYRLGDAITV 709
Query: 681 VLKKADL 687
+ +A+L
Sbjct: 710 KVAQANL 716
>gi|116190595|ref|ZP_01480332.1| hypothetical protein VchoM_02000356 [Vibrio cholerae MO10]
gi|125619156|gb|EAZ47686.1| ribonuclease R [Vibrio cholerae MO10]
Length = 821
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 219/656 (33%), Positives = 340/656 (51%), Gaps = 20/656 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE VKG K+ +V E S KEG I +P + + GD
Sbjct: 70 GQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ + K + EGR+V+I+E R +VG +++V+P S DI IPN
Sbjct: 130 FVLVQPSGTDKRGR-KEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPND 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A A ++V +EIT G +R GK++++LG + I + ++ E
Sbjct: 189 LRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEV 248
Query: 228 MQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ + +E E R +L L ++TIDG DA+D DDAVY E + G ++L VAIAD
Sbjct: 249 EQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIAD 308
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ +T LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 309 VSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSE 368
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y+ Y++V+ S R+TY V+ IL+GD++L Y + L+++ ++ ++L+ +
Sbjct: 369 TGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSAR 428
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+I+FE E K I + K+E + R + K+IE+ MI AN A + + A
Sbjct: 429 DERGAIEFETVETKFIFNA-QRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEA 487
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR HE P E++ + L + G + P + ++++ ++ L+ +L
Sbjct: 488 ALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLL 547
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP- 577
R++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I + P
Sbjct: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPT 607
Query: 578 ----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ D+D + S TER A A E EYMQ VGE L +V
Sbjct: 608 GGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGF 667
Query: 634 FFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F T+ HI+ I+T N YY +D + ++ LGD V V + +L
Sbjct: 668 FVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNL 723
>gi|83585083|ref|ZP_00923736.1| COG0557: Exoribonuclease R [Escherichia coli 101-1]
gi|89110899|ref|AP_004679.1| exoribonuclease R, RNase R [Escherichia coli W3110]
gi|90111698|ref|NP_418600.4| exoribonuclease R, RNase R [Escherichia coli K12]
gi|731093|sp|P21499|RNR_ECOLI Ribonuclease R (RNase R) (Protein vacB)
gi|85676930|dbj|BAE78180.1| exoribonuclease R, RNase R [Escherichia coli W3110]
gi|87082383|gb|AAC77136.2| exoribonuclease R, RNase R [Escherichia coli K12]
Length = 813
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 123
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 124 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 243 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 422 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715
>gi|156867626|gb|EDO60998.1| hypothetical protein CLOLEP_02610 [Clostridium leptum DSM 753]
Length = 699
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 222/662 (33%), Positives = 353/662 (53%), Gaps = 23/662 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ KK RL +++G ++I F E E I++ +E+ A+ GDT
Sbjct: 48 GVLVATKKGRLLSVKSAGLTPA--QMISQSKGFSFARPLEGGEDIYVAQEDRKRAMLGDT 105
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVG-ILEKSKNFAFVIPTGSFGKDIYIPNSK 168
VL+ + + S KG GRV KII G ++ + ++ + G+F + +
Sbjct: 106 VLLR--DIRDSGKGLSGRVEKIIRKGNRLFTGTVVRRGRDLELEL-DGAFRYQVPVEKKG 162
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
+ N D V +++ G K +I+K+ G + ++K DA+I G+ +KF E +
Sbjct: 163 SLHGKNGDKVQAILSY-GPRSGKLTARILKVYGKAASAKVCADAIIDANGIPKKFKKETL 221
Query: 229 QQTKEIIKEEIDYSNRKNLTNLS---IITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
++ +++ +E I + RK +L I TIDGADAKDLDDA+ VEK + +KL V IAD
Sbjct: 222 REAEKLSREPITPAERKKRADLREQLIFTIDGADAKDLDDAISVEK-DGAGWKLGVHIAD 280
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VSHYVK+ +++D EA+ RG SVY DRV+PM P+ +SNG CSLN EEKL FSC M +D
Sbjct: 281 VSHYVKEGSLVDEEAKQRGTSVYFADRVIPMLPEALSNGCCSLNAGEEKLAFSCFMTLDR 340
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDG--DKDLINEYSDIYEMLKQMLELSKILRI 403
KG++ Y KSVI S R Y +VN +L+G + L +Y + L+ EL+++L
Sbjct: 341 KGNLRGYRFQKSVICSKVRGVYDEVNQVLEGCAAERLKEKYQPVLASLQAGQELAQLLEA 400
Query: 404 KKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE 463
K RG++DFE E + LD + V+ +L + +G EK+IE FMI AN+ A LE
Sbjct: 401 KGRRRGTMDFESSEARFFLDRNGTCVD-ILPRSQGLSEKMIEQFMILANQAAALYAKCLE 459
Query: 464 LASIYRTHEKPDREKIVTLNEILSKFGYKIPNF-DNLHPKQFQEIIERSKDKETSMLVHK 522
+ +YR HE PD E++ TL ++ + G + + + +++ +++ +++
Sbjct: 460 IPFVYRVHEDPDPERLNTLQQLAAGLGLRARRIQEGVRSADLSDLLRQAEGTPAQNIINH 519
Query: 523 TILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFS-----TIDNSIKP 577
+LR L +ARY + + HFGL Y HFTSPIRRY D +HR+L T+D K
Sbjct: 520 QVLRTLAKARYDNKPLGHFGLNLDDYCHFTSPIRRYPDTAIHRILTGVAEGITVDRLQKK 579
Query: 578 FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFET 637
+++ E A S E A +AE ++ + + EYM++ +GET + +V+G + IF +
Sbjct: 580 YQDFS-REAAVLSSACELRAQRAERQAEKCYMAEYMRRHLGETFDGIVSGATARGIFVQL 638
Query: 638 DEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVP 696
+E + + + FD D S + +GD + V + AD+ T I P
Sbjct: 639 VNSVEGFVGVEDFPDCEFQFDGL-LTHTDVRSGRRLTVGDPMKVQVAAADVATGRIDFTP 697
Query: 697 LD 698
+
Sbjct: 698 AE 699
>gi|121728988|ref|ZP_01681991.1| ribonuclease R [Vibrio cholerae V52]
gi|147675348|ref|YP_001218093.1| ribonuclease R [Vibrio cholerae O395]
gi|153214904|ref|ZP_01949702.1| ribonuclease R [Vibrio cholerae 1587]
gi|153827410|ref|ZP_01980077.1| ribonuclease R [Vibrio cholerae MZO-2]
gi|153831021|ref|ZP_01983688.1| ribonuclease R [Vibrio cholerae 623-39]
gi|121628711|gb|EAX61179.1| ribonuclease R [Vibrio cholerae V52]
gi|124115063|gb|EAY33883.1| ribonuclease R [Vibrio cholerae 1587]
gi|146317231|gb|ABQ21770.1| ribonuclease R [Vibrio cholerae O395]
gi|148873499|gb|EDL71634.1| ribonuclease R [Vibrio cholerae 623-39]
gi|149738683|gb|EDM53025.1| ribonuclease R [Vibrio cholerae MZO-2]
Length = 821
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 219/656 (33%), Positives = 340/656 (51%), Gaps = 20/656 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE VKG K+ +V E S KEG I +P + + GD
Sbjct: 70 GQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ + K + EGR+V+I+E R +VG +++V+P S DI IPN
Sbjct: 130 FVLVQPSGTDKRGR-KEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPND 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A A ++V +EIT G +R GK++++LG + I + ++ E
Sbjct: 189 LRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEV 248
Query: 228 MQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ + +E E R +L L ++TIDG DA+D DDAVY E + G ++L VAIAD
Sbjct: 249 EQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIAD 308
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ +T LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 309 VSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSE 368
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + Y+ Y++V+ S R+TY V+ IL+GD++L Y + L+++ ++ ++L+ +
Sbjct: 369 TGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSAR 428
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+I+FE E K I + K+E + R + K+IE+ MI AN A + + A
Sbjct: 429 DERGAIEFETVETKFIFNA-QRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEA 487
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR HE P E++ + L + G + P + ++++ ++ L+ +L
Sbjct: 488 ALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLL 547
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP- 577
R++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I + P
Sbjct: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPT 607
Query: 578 ----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ D+D + S TER A A E EYMQ VGE L +V
Sbjct: 608 GGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGF 667
Query: 634 FFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F T+ HI+ I+T N YY +D + ++ LGD V V + +L
Sbjct: 668 FVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNL 723
>gi|71908585|ref|YP_286172.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Dechloromonas aromatica RCB]
gi|71848206|gb|AAZ47702.1| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R
[Dechloromonas aromatica RCB]
Length = 805
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 216/658 (32%), Positives = 347/658 (52%), Gaps = 14/658 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++K LPE + G + + + F+ +D IF+ + + L GD
Sbjct: 74 GQLLRNRKGAYILPERASLTPGRVQGHPDGYGFLVPDDGSAD--IFLDQHQMGKVLHGDR 131
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
LV +T + + EG +V++ E VVG + FV+P +DI +P K
Sbjct: 132 ALVRVTGIDRKGR-PEGGIVEVTERVNTKVVGRVFVEHGVVFVVPENKRISQDILVPPEK 190
Query: 169 IAN--ADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
A ++ +V VEI KP G+II+ LG+ + I+ + + L +FS
Sbjct: 191 KAKFKPESGQVVMVEIIEQPSKYSKPIGQIIETLGNYADPGMEIEIALRKHDLPFEFSKA 250
Query: 227 AMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
A+++ K + + + DY+ R++L L ++TIDG A+D DDAV+ EK G ++L+VAIA
Sbjct: 251 ALEENKALPDKVKKADYAGREDLRELPLVTIDGETARDFDDAVFCEKKGRG-WRLVVAIA 309
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVSHYVK LD EA RGNSVY RV+PM P+++SNGICSLN E++ C+MEI
Sbjct: 310 DVSHYVKPGMALDKEALERGNSVYFPRRVIPMLPEKLSNGICSLNPDVERMAMVCDMEIS 369
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINE-YSDIYEMLKQMLELSKILRI 403
G + Y Y +V +S R+TY V + L+G+K E + + ++ + +L L
Sbjct: 370 SSGKIGKYRFYPAVFRSHARLTYNLVWSWLNGEKKPETEAHISVLPHVQNLYKLFGALHK 429
Query: 404 KKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLE 463
+ RG+IDFE E +++ +E K+E ++ R + +IIE+ M+AAN ++ + +
Sbjct: 430 ARGQRGAIDFETTETQMLFNE-QGKIENIVPVVRNDAHRIIEECMLAANVCASDFLAEHK 488
Query: 464 LASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKT 523
+YR HE P +K+ L L +FG + D K + ++E+ K + L+
Sbjct: 489 QTCLYRIHESPSEDKLKNLRAFLGEFGLALGGGDEPRAKDYGILLEKVKLRPDFQLLQTV 548
Query: 524 ILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADL 583
+LR+L+QA Y+ +++ HFGLA HYTHFTSPIRRY DL+VHR + + + K +
Sbjct: 549 MLRSLRQAMYSPDNVGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLAGQ-KYVPSREW 607
Query: 584 DEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIE 642
D+I S TER A +A + +M++R+GE + ++ F D +IE
Sbjct: 608 DDIGLQCSSTERRADEATRDVENWLKCFFMKERIGEEFDGTISAVTAFGFFVALDTIYIE 667
Query: 643 CSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLDD 699
++ +Y+ FD + M + + F LGD+V V L +A+L + I V D
Sbjct: 668 GLVHVSELGSDYFQFDNIKHQMLGERTGQRFRLGDRVKVRLVRANLESNRIDFVLAGD 725
>gi|153839633|ref|ZP_01992300.1| ribonuclease R [Vibrio parahaemolyticus AQ3810]
gi|149746854|gb|EDM57842.1| ribonuclease R [Vibrio parahaemolyticus AQ3810]
Length = 780
Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats.
Identities = 218/656 (33%), Positives = 344/656 (52%), Gaps = 20/656 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE VKG K+ +V E S K+ I +P + N + GD
Sbjct: 70 GQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDDDILLPHHQMKNIIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ T+ K + EGR+V+++E R + +VG +++V+P S +DI IPN
Sbjct: 130 FVLVQPTDNSKRGR-REGRLVRVLEERNSQIVGRFFLEYGYSYVVPDDSRISQDILIPNE 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A A ++V +EIT G R GK++++LG + I + ++
Sbjct: 189 HKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPYEWPEAV 248
Query: 228 MQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
+Q + +E E R +L L ++TIDG DA+D DDAV+ EK ++G ++L VAIAD
Sbjct: 249 EKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRLWVAIAD 308
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ ++ LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 309 VSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTISE 368
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + +Y+ Y++V+ S R+TY V+AIL+GD++L Y + L+++ + K+L+ +
Sbjct: 369 SGKLSSYKHYEAVMNSHARLTYNKVSAILEGDEELRERYQPLVSHLEELHAMYKVLKEAR 428
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+I+FE E K I + + K+E + R + KIIE+ MI AN A + +
Sbjct: 429 DQRGAIEFETVETKFIFNAE-RKIESIEPVIRNDAHKIIEECMILANIASASLVEKAKEP 487
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR HE P ++ + LS+ G ++ P + ++ + ++ L+ +L
Sbjct: 488 ALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQELIQTMLL 547
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP- 577
R++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I + P
Sbjct: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQDRWTPT 607
Query: 578 ----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ D+D + S TER A A E EYMQ VG+ L ++
Sbjct: 608 GGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELEGVIANVTSFGF 667
Query: 634 FFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F TD HI+ I+T N YY FD + ++ LGD V V + +L
Sbjct: 668 FVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNL 723
>gi|27735249|sp|P30851|RNR_SHIFL Ribonuclease R (RNase R) (Protein vacB)
Length = 813
Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 123
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 124 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 243 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 302 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 422 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715
>gi|537020|gb|AAA97075.1| vacB [Escherichia coli]
Length = 827
Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|75212272|ref|ZP_00712312.1| COG0557: Exoribonuclease R [Escherichia coli B171]
gi|75255906|ref|ZP_00727638.1| COG0557: Exoribonuclease R [Escherichia coli E22]
Length = 813
Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 123
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 124 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 243 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 302 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 422 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLSKEQGHQGNTTETG 600
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715
>gi|24115534|ref|NP_710044.1| putative enzyme [Shigella flexneri 2a str. 301]
gi|30065551|ref|NP_839722.1| putative enzyme [Shigella flexneri 2a str. 2457T]
gi|24054862|gb|AAN45751.1| putative enzyme [Shigella flexneri 2a str. 301]
gi|30043815|gb|AAP19534.1| putative enzyme [Shigella flexneri 2a str. 2457T]
Length = 827
Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|75188890|ref|ZP_00702157.1| COG0557: Exoribonuclease R [Escherichia coli E24377A]
gi|75198025|ref|ZP_00708095.1| COG0557: Exoribonuclease R [Escherichia coli HS]
gi|75231228|ref|ZP_00717635.1| COG0557: Exoribonuclease R [Escherichia coli B7A]
gi|75234272|ref|ZP_00718660.1| COG0557: Exoribonuclease R [Escherichia coli E110019]
gi|75515418|ref|ZP_00737575.1| COG0557: Exoribonuclease R [Escherichia coli 53638]
gi|110808097|ref|YP_691617.1| putative enzyme [Shigella flexneri 5 str. 8401]
gi|124528238|ref|ZP_01699562.1| VacB and RNase II family 3'-5' exoribonucleases [Escherichia coli
B]
gi|110617645|gb|ABF06312.1| putative enzyme [Shigella flexneri 5 str. 8401]
gi|124500680|gb|EAY48150.1| VacB and RNase II family 3'-5' exoribonucleases [Escherichia coli
B]
gi|157069323|gb|ABV08578.1| ribonuclease R [Escherichia coli HS]
gi|157078686|gb|ABV18394.1| ribonuclease R [Escherichia coli E24377A]
Length = 813
Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 123
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 124 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 243 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 302 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 422 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715
>gi|15600130|ref|NP_253624.1| exoribonuclease RNase R [Pseudomonas aeruginosa PAO1]
gi|9951216|gb|AAG08322.1|AE004906_10 exoribonuclease RNase R [Pseudomonas aeruginosa PAO1]
Length = 904
Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats.
Identities = 208/667 (31%), Positives = 337/667 (50%), Gaps = 33/667 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G LI ++ + + ++G ++ F F+ +D + +F+ + DGD
Sbjct: 70 GQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDD--LFLSPTQMRLVFDGDR 127
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVG-ILEKSKNFAFVIPTGSFGKDIYIPNSK 168
L ++ + + EG++V++IE VVG E+S V +++ IP K
Sbjct: 128 ALARVSGHDRRGR-REGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEVLIPPGK 186
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + V V I W R+ +G+I+++LG I+ + + +
Sbjct: 187 AGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHVWPAAVE 246
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ ++ E E D R +L + +TIDG DA+D DDAVY E G ++L VAIADV
Sbjct: 247 KEAAKLKPEVAEKDKEKRVDLRQVPFVTIDGEDARDFDDAVYAEAKRGGGWRLFVAIADV 306
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYVK + LD EA RGNSVY +RV+PM P+ +SNG+CSLN ++L CEM +
Sbjct: 307 SHYVKVGSALDEEAARRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCEMTLSKA 366
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGD-----KDLINEYSDIYEMLKQMLELSKIL 401
G + Y+ Y++VI S R+TY V+ +L+ ++L + + L+Q+ L K L
Sbjct: 367 GKLTGYQFYEAVIHSHARLTYTKVSQLLEHPDSVEAENLRQQLPGVVPHLQQLYALYKAL 426
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
+ RG+IDFE E +++ D K+ ++ R + ++IE+ M+ AN A +
Sbjct: 427 LAGRHVRGAIDFETQETRIVFGAD-RKISEIRPTQRNDAHRLIEECMLCANVATARFLQK 485
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNL-HPKQFQEIIERSKDKETSMLV 520
+ ++YR H+ P +EK+ L + L + G + P +QE++E+ D+ L+
Sbjct: 486 HAIPALYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIHDRADFRLI 545
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------ 574
+LR+L QA Y+ ++ HFGL YTHFTSPIRRY DL+VHR + S I +
Sbjct: 546 QTVMLRSLSQAVYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKAETPHV 605
Query: 575 ------------IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
I P+ E LD++ + S TER A +A + EYM++RVGET
Sbjct: 606 QRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERVGETFP 665
Query: 623 VMVTGFAQKKIFFE-TDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++T +F E TD +E +T +YY FD ++ + + + F LGD +V
Sbjct: 666 GVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLGDTTEV 725
Query: 681 VLKKADL 687
V+ + DL
Sbjct: 726 VVARVDL 732
>gi|26251071|ref|NP_757111.1| Ribonuclease R [Escherichia coli CFT073]
gi|26111503|gb|AAN83685.1|AE016771_196 Ribonuclease R [Escherichia coli CFT073]
Length = 827
Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG+ ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGIVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVAGLKEEVPEEAKVG-RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|116053086|ref|YP_793405.1| exoribonuclease RNase R [Pseudomonas aeruginosa UCBPP-PA14]
gi|115588307|gb|ABJ14322.1| exoribonuclease RNase R [Pseudomonas aeruginosa UCBPP-PA14]
Length = 907
Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats.
Identities = 208/667 (31%), Positives = 337/667 (50%), Gaps = 33/667 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G LI ++ + + ++G ++ F F+ +D + +F+ + DGD
Sbjct: 70 GQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDD--LFLSPTQMRLVFDGDR 127
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVG-ILEKSKNFAFVIPTGSFGKDIYIPNSK 168
L ++ + + EG++V++IE VVG E+S V +++ IP K
Sbjct: 128 ALARVSGHDRRGR-REGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEVLIPPGK 186
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + V V I W R+ +G+I+++LG I+ + + +
Sbjct: 187 AGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHVWPAAVE 246
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ ++ E E D R +L + +TIDG DA+D DDAVY E G ++L VAIADV
Sbjct: 247 KEAAKLKPEVAEKDKEKRVDLRQVPFVTIDGEDARDFDDAVYAEAKRGGGWRLFVAIADV 306
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYVK + LD EA RGNSVY +RV+PM P+ +SNG+CSLN ++L CEM +
Sbjct: 307 SHYVKVGSALDEEAARRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCEMTLSKA 366
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGD-----KDLINEYSDIYEMLKQMLELSKIL 401
G + Y+ Y++VI S R+TY V+ +L+ ++L + + L+Q+ L K L
Sbjct: 367 GKLTGYQFYEAVIHSHARLTYTKVSQLLEHPDSVEAENLRQQLPGVVPHLQQLYALYKAL 426
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
+ RG+IDFE E +++ D K+ ++ R + ++IE+ M+ AN A +
Sbjct: 427 LAGRHVRGAIDFETQETRIVFGAD-RKISEIRPTQRNDAHRLIEECMLCANVATARFLQK 485
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNL-HPKQFQEIIERSKDKETSMLV 520
+ ++YR H+ P +EK+ L + L + G + P +QE++E+ D+ L+
Sbjct: 486 HAIPALYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIHDRADFRLI 545
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------ 574
+LR+L QA Y+ ++ HFGL YTHFTSPIRRY DL+VHR + S I +
Sbjct: 546 QTVMLRSLSQAVYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKAETPHV 605
Query: 575 ------------IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
I P+ E LD++ + S TER A +A + EYM++RVGET
Sbjct: 606 QRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERVGETFP 665
Query: 623 VMVTGFAQKKIFFE-TDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++T +F E TD +E +T +YY FD ++ + + + F LGD +V
Sbjct: 666 GVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLGDTTEV 725
Query: 681 VLKKADL 687
V+ + DL
Sbjct: 726 VVARVDL 732
>gi|28899581|ref|NP_799186.1| ribonuclease R [Vibrio parahaemolyticus RIMD 2210633]
gi|29611936|sp|P40611|RNR_VIBPA Ribonuclease R (RNase R) (VacB protein homolog)
gi|28807817|dbj|BAC61070.1| ribonuclease R [Vibrio parahaemolyticus RIMD 2210633]
Length = 835
Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats.
Identities = 218/656 (33%), Positives = 344/656 (52%), Gaps = 20/656 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G L+ ++ +LPE VKG K+ +V E S K+ I +P + N + GD
Sbjct: 70 GQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDDDILLPHHQMKNIIHGD 129
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV+ T+ K + EGR+V+++E R + +VG +++V+P S +DI IPN
Sbjct: 130 FVLVQPTDNSKRGR-REGRLVRVLEERNSQIVGRFFLEYGYSYVVPDDSRISQDILIPNE 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A A ++V +EIT G R GK++++LG + I + ++
Sbjct: 189 HKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPYEWPEAV 248
Query: 228 MQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
+Q + +E E R +L L ++TIDG DA+D DDAV+ EK ++G ++L VAIAD
Sbjct: 249 EKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRLWVAIAD 308
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ ++ LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 309 VSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTISE 368
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
G + +Y+ Y++V+ S R+TY V+AIL+GD++L Y + L+++ + K+L+ +
Sbjct: 369 SGKLSSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAMYKVLKEAR 428
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG+I+FE E K I + + K+E + R + KIIE+ MI AN A + +
Sbjct: 429 DQRGAIEFETVETKFIFNAE-RKIESIEPVIRNDAHKIIEECMILANIASASLVEKAKEP 487
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
++YR HE P ++ + LS+ G ++ P + ++ + ++ L+ +L
Sbjct: 488 ALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQELIQTMLL 547
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-------DNSIKP- 577
R++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I + P
Sbjct: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQDRWTPT 607
Query: 578 ----FKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ D+D + S TER A A E EYMQ VG+ L ++
Sbjct: 608 GGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELEGVIANVTSFGF 667
Query: 634 FFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F TD HI+ I+T N YY FD + ++ LGD V V + +L
Sbjct: 668 FVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNL 723
>gi|82546580|ref|YP_410527.1| putative enzyme [Shigella boydii Sb227]
gi|81247991|gb|ABB68699.1| putative enzyme [Shigella boydii Sb227]
Length = 827
Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-CRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|84323720|ref|ZP_00971788.1| COG0557: Exoribonuclease R [Pseudomonas aeruginosa 2192]
gi|126197550|gb|EAZ61613.1| exoribonuclease RNase R [Pseudomonas aeruginosa 2192]
Length = 904
Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats.
Identities = 208/667 (31%), Positives = 337/667 (50%), Gaps = 33/667 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G LI ++ + + ++G ++ F F+ +D + +F+ + DGD
Sbjct: 70 GQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDD--LFLSPTQMRLVFDGDR 127
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVG-ILEKSKNFAFVIPTGSFGKDIYIPNSK 168
L ++ + + EG++V++IE VVG E+S V +++ IP K
Sbjct: 128 ALARVSGHDRRGR-REGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEVLIPPGK 186
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + V V I W R+ +G+I+++LG I+ + + +
Sbjct: 187 AGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHVWPAAVE 246
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ ++ E E D R +L + +TIDG DA+D DDAVY E G ++L VAIADV
Sbjct: 247 KEAAKLKPEVAEKDKEKRIDLRQVPFVTIDGEDARDFDDAVYAEAKRGGGWRLFVAIADV 306
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYVK + LD EA RGNSVY +RV+PM P+ +SNG+CSLN ++L CEM +
Sbjct: 307 SHYVKVGSALDEEAARRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCEMTLSKA 366
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGD-----KDLINEYSDIYEMLKQMLELSKIL 401
G + Y+ Y++VI S R+TY V+ +L+ ++L + + L+Q+ L K L
Sbjct: 367 GKLTGYQFYEAVIHSHARLTYTKVSQLLEHPDSVEAENLRQQLPGVVPHLQQLYALYKAL 426
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
+ RG+IDFE E +++ D K+ ++ R + ++IE+ M+ AN A +
Sbjct: 427 LAGRHVRGAIDFETQETRIVFGAD-RKISEIRPTQRNDAHRLIEECMLCANVATARFLQK 485
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNL-HPKQFQEIIERSKDKETSMLV 520
+ ++YR H+ P +EK+ L + L + G + P +QE++E+ D+ L+
Sbjct: 486 HAIPALYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIHDRADFRLI 545
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------ 574
+LR+L QA Y+ ++ HFGL YTHFTSPIRRY DL+VHR + S I +
Sbjct: 546 QTVMLRSLSQAVYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKAETPHV 605
Query: 575 ------------IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
I P+ E LD++ + S TER A +A + EYM++RVGET
Sbjct: 606 QRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERVGETFP 665
Query: 623 VMVTGFAQKKIFFE-TDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++T +F E TD +E +T +YY FD ++ + + + F LGD +V
Sbjct: 666 GVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLGDTTEV 725
Query: 681 VLKKADL 687
V+ + DL
Sbjct: 726 VVARVDL 732
>gi|92113014|ref|YP_572942.1| Ribonuclease R [Chromohalobacter salexigens DSM 3043]
gi|91796104|gb|ABE58243.1| Ribonuclease R [Chromohalobacter salexigens DSM 3043]
Length = 801
Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats.
Identities = 210/679 (30%), Positives = 358/679 (52%), Gaps = 32/679 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G ++ +++ +L + ++G + ++ F+ +ED + K + +P + DGD
Sbjct: 71 GQILRNRRGAYALIDKLDLIRGRVQGHRDGMGFLIREDGK-KPDLVLPPRQMRRVFDGDQ 129
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGIL-EKSKNFAFVIPTGS-FGKDIYIPNS 167
VLV I+ + + + E + +++ ++VG+ + + F +IP S +++ +P+S
Sbjct: 130 VLVRISGRDRRGRD-EATIAEVLARNTQSLVGVYRQNTAEFGVLIPENSRISQEVIVPHS 188
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A + +VAV IT +P G++ ++LG + ID I + +F E
Sbjct: 189 ASGGARDGQIVAVRITQQPATRVQPVGEVTEVLGERMDPGMEIDIAIRSYEIPAEFPPEV 248
Query: 228 MQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
+ ++ E D NR +L ++ ++TID AKD DDAV K ++G++KL+VAIAD
Sbjct: 249 HAEIADMSASVAEADKQNRIDLRDVPLVTIDDESAKDFDDAVCAWKTKSGSWKLVVAIAD 308
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VSHYV+ + LD EA RG SVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 309 VSHYVRPGSALDQEAITRGTSVYFPGQVVPMLPELLSNGLCSLNPEVDRLALVCEMNISP 368
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGD----KDLINEYSDIYEMLKQMLELSKIL 401
G + Y Y++V +S R+TY V AILD + L +Y ++ LK + L IL
Sbjct: 369 NGAISRYRFYEAVFQSHARLTYNKVAAILDDEGPEADALREQYRNLVPSLKNLKSLYTIL 428
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
R + RG+IDFE E ++I +E K+EK++ + R + KIIE+ M+AAN A +
Sbjct: 429 REAREARGAIDFETTETEIIFNE-ARKIEKIVPRSRNDAHKIIEECMLAANVATARFLDK 487
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVH 521
+L ++YR HEKP E++ L L++ G + D+ P+ ++++ E K + + ++
Sbjct: 488 HDLPALYRIHEKPSPERLDKLRLFLNELGLSLGGGDDPTPQDYRDLAEAIKGRPDADVIQ 547
Query: 522 KTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTI-----DNSI- 575
+LR++ +A Y+ ++ HFGLA Y HFTSPIRRY DL+VHR + S I N++
Sbjct: 548 TVMLRSMSRAVYSPQNDGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRGPRQTNTVL 607
Query: 576 -------------KPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
P+ + E+ +H S TER A A + E+M ++GE +
Sbjct: 608 RAEGAPVEPPSKWAPYTFEQMLELGEHCSMTERRADDATRDVEDWLKCEFMSDKLGEIFD 667
Query: 623 VMVTGFAQKKIFFETDE-HIECSWDITT-AINYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
+ Q +F D+ ++E +T+ +YY ++ E + ++ S + LGD V V
Sbjct: 668 GTIASVTQFGVFVRLDDVYVEGLVHVTSLPSDYYHYEAEKHRLKGERSGMSYRLGDGVTV 727
Query: 681 VLKKADLLTLEIAVVPLDD 699
+ + DL +I DD
Sbjct: 728 QVARVDLDERKIDFELADD 746
>gi|74314664|ref|YP_313083.1| putative enzyme [Shigella sonnei Ss046]
gi|73858141|gb|AAZ90848.1| putative enzyme [Shigella sonnei Ss046]
Length = 827
Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 345/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYVPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|82779439|ref|YP_405788.1| putative enzyme [Shigella dysenteriae Sd197]
gi|81243587|gb|ABB64297.1| putative enzyme [Shigella dysenteriae Sd197]
Length = 823
Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 345/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVTGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVTPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSITGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|56461043|ref|YP_156324.1| Exoribonuclease R [Idiomarina loihiensis L2TR]
gi|56180053|gb|AAV82775.1| Exoribonuclease R [Idiomarina loihiensis L2TR]
Length = 769
Score = 328 bits (840), Expect = 9e-88, Method: Composition-based stats.
Identities = 223/656 (33%), Positives = 343/656 (52%), Gaps = 26/656 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRII--KNKFAFVDKEDSEEKEGIFIPKEEFNNALDG 107
G LI K + LPE +KG RII K+ F F ED + +FIP + + L G
Sbjct: 65 GQLIYSKANAYGLPERMDLIKG--RIIGHKDGFGFCQTEDGGKD--LFIPHHQMYSVLHG 120
Query: 108 DTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPT-GSFGKDIYIPN 166
D VLV+ T K S EGR+V++ E R + +VG + V+P G +DI IP+
Sbjct: 121 DRVLVK-TSGKDSRGRTEGRIVRVTEPRDSNIVGRYFVEHDLGIVVPDDGRISQDILIPD 179
Query: 167 SKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNE 226
+ A + LV VEIT P G++ ++LG I I + ++ E
Sbjct: 180 ADKNGARHGQLVVVEITRRPSRRTSPIGRVSEVLGEHMAPGMEIQVAIREHDIPTEWPTE 239
Query: 227 AMQQTKEIIKEEID---YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAI 283
++ K+ EE+ Y RK+L +L +ITIDG D++D DDAV + E G ++L VAI
Sbjct: 240 VDEELKKY-SEEVPAEAYEGRKDLRDLPLITIDGEDSRDFDDAVCCVQEEKG-WRLWVAI 297
Query: 284 ADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEI 343
ADVS+YV+ +TVLD A RGNSVY V+PM P+++SNG+CSLN ++L EME+
Sbjct: 298 ADVSYYVRPDTVLDKAATERGNSVYFPSNVIPMLPEKLSNGLCSLNPDVDRLCMVAEMEL 357
Query: 344 DLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRI 403
+G + + E Y +V+KS R+TY V +LDGD++L +Y + + ++++ L L
Sbjct: 358 GPRGKLKSTEFYPAVMKSHARLTYNKVKKLLDGDEELQQQYQHVMDNVQELERLYNALSA 417
Query: 404 KKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW-L 462
+ R +I+F+ E + I + K+E + R KIIE+ MI AN A+ I
Sbjct: 418 ARKRRSAIEFDTQETRFIFNA-QRKIESIEPVKRHVAHKIIEECMIMANVASAQLIESDK 476
Query: 463 ELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHK 522
E+ +++R HE P E++ L + G + D PK + ++E+ KD++ L+
Sbjct: 477 EVGALFRVHETPADERLNNFRSFLGELGLNLEGGDEPSPKDYATLLEQVKDRQDHELIET 536
Query: 523 TILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIK------ 576
+LR+++QA Y E+ HFGLA Y HFTSPIRRY DL++HR + + +
Sbjct: 537 MLLRSMQQAVYQPENKGHFGLALKSYAHFTSPIRRYPDLILHRAIKAILRKKKGEEKGLV 596
Query: 577 ---PFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKI 633
+ + LDE+ H S TER A A + E+M +G +++ +
Sbjct: 597 GAWAYSDKQLDELGVHTSMTERRADDATRQVDEWLKCEFMLDHIGMEFEGVISSVTNFGL 656
Query: 634 FFE-TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
F +D I+ I+ N YY FD++ + +S+ VF LGD V V +K +L
Sbjct: 657 FVRLSDYQIDGLIHISNLDNDYYHFDQQKGMLIGENSNSVFRLGDNVKVKVKDVNL 712
>gi|26991559|ref|NP_746984.1| ribonuclease R [Pseudomonas putida KT2440]
gi|24986645|gb|AAN70448.1|AE016686_2 ribonuclease R [Pseudomonas putida KT2440]
Length = 857
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 205/644 (31%), Positives = 340/644 (52%), Gaps = 37/644 (5%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D E +F+ + DGD L ++ + + EG +V++I
Sbjct: 97 RDGFGFLIPDDGSED--LFLSPSQMRLVFDGDRGLARVSGVDRRGR-REGVLVEVISRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
+VVG + +V P +++ + + A V ++IT W +P+G
Sbjct: 154 ESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSII 253
+++++G+ ID + + + N+ +++ ++ E E D R +L +L +
Sbjct: 214 VVEVIGNYMAPGMEIDVALRSYDIPHVWPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFV 273
Query: 254 TIDGADAKDLDDAVYVE-----KLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVY 308
TIDG DA+D DDAVY E +L +G ++L VAIADVS YV+ + LD+EA+ RGNSVY
Sbjct: 274 TIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVY 333
Query: 309 LVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYK 368
+RV+PM P+E+SNG+CSLN ++L CEM ++ G +V+Y+ Y+ VI S R+TY
Sbjct: 334 FPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYN 393
Query: 369 DVNAILDGD-----KDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILD 423
V+++L+ K L EY ++ LK + L K+L + TRG+IDFE E ++I
Sbjct: 394 KVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARHTRGAIDFETQETRIIFG 453
Query: 424 EDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLN 483
E+ K+ ++ R + K+IE+ M+AAN AE + + ++YR H+ P E++ L
Sbjct: 454 EE-RKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHDGPPPERLEKLR 512
Query: 484 EILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGL 543
L + G + + PK +Q ++ + L+ +LR+L QA Y+ E+ HFGL
Sbjct: 513 AFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGL 572
Query: 544 ASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEADLDE 585
YTHFTSPIRRY DL+VHR + S I + I P+ E L++
Sbjct: 573 NYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQ 632
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECS 644
+ + S TER A +A + V E+M+ RVGET ++T +F E TD ++E
Sbjct: 633 LGEQCSMTERRADEATRDVVNWLKCEFMKDRVGETFPGVITAVTGFGLFVELTDIYVEGL 692
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
++ +YY FD ++ + + + F LGD ++V + + DL
Sbjct: 693 VHVSALPGDYYHFDPVHHRLAGERTGRSFRLGDTIEVKVMRVDL 736
>gi|75235875|ref|ZP_00720023.1| COG0557: Exoribonuclease R [Escherichia coli F11]
gi|75236168|ref|ZP_00720290.1| COG0557: Exoribonuclease R [Escherichia coli F11]
gi|110644536|ref|YP_672266.1| ribonuclease R [Escherichia coli 536]
gi|110346128|gb|ABG72365.1| ribonuclease R [Escherichia coli 536]
Length = 813
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 345/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 123
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 124 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 243 QQVAGLKEEVPEEAKVG-RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 302 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 422 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVISSVTGFGFF 660
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715
>gi|84317621|ref|ZP_00966060.1| COG0557: Exoribonuclease R [Pseudomonas aeruginosa C3719]
gi|107104036|ref|ZP_01367954.1| hypothetical protein PaerPA_01005109 [Pseudomonas aeruginosa PACS2]
gi|126170279|gb|EAZ55790.1| exoribonuclease RNase R [Pseudomonas aeruginosa C3719]
Length = 905
Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats.
Identities = 208/667 (31%), Positives = 337/667 (50%), Gaps = 33/667 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G LI ++ + + ++G ++ F F+ +D + +F+ + DGD
Sbjct: 70 GQLIYTRRGAYAPVDKLDLIRGRISGHRDGFGFLIPDDGSDD--LFLSPTQMRLVFDGDR 127
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVG-ILEKSKNFAFVIPTGSFGKDIYIPNSK 168
L ++ + + EG++V++IE VVG E+S V +++ IP K
Sbjct: 128 ALARVSGHDRRGR-REGQLVEVIERAHEIVVGRYFEESGIGVVVADNPKIQQEVLIPPGK 186
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A + V V I W R+ +G+I+++LG I+ + + +
Sbjct: 187 AGKARHNQFVQVRIEQWPSIHRQAQGEIVEVLGDYMAPGMEIEVALRSYDIPHVWPAAVE 246
Query: 229 QQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADV 286
++ ++ E E D R +L + +TIDG DA+D DDAVY E G ++L VAIADV
Sbjct: 247 KEAAKLKPEVAEKDKEKRVDLRQVPFVTIDGEDARDFDDAVYAEAKRGGGWRLFVAIADV 306
Query: 287 SHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLK 346
SHYVK + LD EA RGNSVY +RV+PM P+ +SNG+CSLN ++L CEM +
Sbjct: 307 SHYVKVGSALDEEAARRGNSVYFPERVIPMLPEVLSNGLCSLNPLVDRLAMVCEMTLSKA 366
Query: 347 GDVVNYEVYKSVIKSVHRMTYKDVNAILDGD-----KDLINEYSDIYEMLKQMLELSKIL 401
G + Y+ Y++VI S R+TY V+ +L+ ++L + + L+Q+ L K L
Sbjct: 367 GKLTGYQFYEAVIHSHARLTYTKVSQLLEHPDSVEAENLRQQLPGVVPHLQQLYALYKAL 426
Query: 402 RIKKFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYW 461
+ RG+IDFE E +++ D K+ ++ R + ++IE+ M+ AN A +
Sbjct: 427 LAGRHVRGAIDFETQETRIVFGAD-RKISEIRPTQRNDAHRLIEECMLCANVATARFLQK 485
Query: 462 LELASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNL-HPKQFQEIIERSKDKETSMLV 520
+ ++YR H+ P +EK+ L + L + G + P +QE++E+ D+ L+
Sbjct: 486 HAIPALYRVHDGPPQEKLNNLRQFLGELGLSLGRGKAAPTPGDYQELLEKIHDRADFRLI 545
Query: 521 HKTILRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------ 574
+LR+L QA Y+ ++ HFGL YTHFTSPIRRY DL+VHR + S I +
Sbjct: 546 QTVMLRSLSQAVYSPDNNGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRSVIRSKAETPHV 605
Query: 575 ------------IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN 622
I P+ E LD++ + S TER A +A + EYM++RVGET
Sbjct: 606 QRAGAASMPKARIYPYDELRLDQLGEQCSMTERRADEATRDVTNWLKCEYMRERVGETFP 665
Query: 623 VMVTGFAQKKIFFE-TDEHIECSWDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDV 680
++T +F E TD +E +T +YY FD ++ + + + F LGD +V
Sbjct: 666 GVITAVTGFGLFVELTDIFVEGLVHVTALPGDYYHFDAVHHRLSGERTGRSFRLGDTTEV 725
Query: 681 VLKKADL 687
V+ + DL
Sbjct: 726 VVARVDL 732
>gi|126358428|ref|ZP_01715427.1| ribonuclease R [Pseudomonas putida GB-1]
gi|126317193|gb|EAZ68114.1| ribonuclease R [Pseudomonas putida GB-1]
Length = 857
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 204/644 (31%), Positives = 339/644 (52%), Gaps = 37/644 (5%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D + +F+ + A DGD L ++ + + EG +V++I
Sbjct: 97 RDGFGFLIPDDGSDD--LFLGPSQMRLAFDGDRALARVSGTDRRGR-REGVIVEVISRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
+VVG + +V P +++ + + A V ++IT W +P+G
Sbjct: 154 ESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSII 253
+++++G+ ID + + + + +++ ++ E E D R +L +L +
Sbjct: 214 VVEVIGNYMAPGMEIDVALRSYDIPHVWPADVVKEARKFRSEVEEKDKEKRVDLRHLPFV 273
Query: 254 TIDGADAKDLDDAVYVE-----KLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVY 308
TIDG DA+D DDAVY E +L +G ++L VAIADVS YV+ + LD+EA+ RGNSVY
Sbjct: 274 TIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVY 333
Query: 309 LVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYK 368
+RV+PM P+E+SNG+CSLN ++L CEM ++ G +V+Y+ Y+ VI S R+TY
Sbjct: 334 FPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYN 393
Query: 369 DVNAILDG-----DKDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILD 423
V+++L+ K L EY ++ LK + L K+L + TRG+IDFE E ++I
Sbjct: 394 KVSSMLEHARTREGKALREEYKEVVPDLKNLYNLYKVLVDARHTRGAIDFETQETRIIFG 453
Query: 424 EDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLN 483
D K+ ++ R + K+IE+ M+AAN AE + + ++YR H+ P E++ L
Sbjct: 454 -DQRKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHDGPPPERLEKLR 512
Query: 484 EILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGL 543
L + G + + PK +Q ++ + L+ +LR+L QA Y+ E+ HFGL
Sbjct: 513 AFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGL 572
Query: 544 ASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEADLDE 585
YTHFTSPIRRY DL+VHR + S I + I P+ E L++
Sbjct: 573 NYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQ 632
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECS 644
+ + S TER A +A + V E+M+ RVGET ++T +F E TD ++E
Sbjct: 633 LGEQCSMTERRADEATRDVVNWLKCEFMKDRVGETFPGVITAVTGFGLFVELTDIYVEGL 692
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
++ +YY FD ++ + + + F LGD ++V + + DL
Sbjct: 693 VHVSALPGDYYHFDPVHHRLSGERTGRSFRLGDTIEVKVMRVDL 736
>gi|148549962|ref|YP_001270064.1| ribonuclease R [Pseudomonas putida F1]
gi|148514020|gb|ABQ80880.1| ribonuclease R [Pseudomonas putida F1]
Length = 857
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 205/644 (31%), Positives = 339/644 (52%), Gaps = 37/644 (5%)
Query: 77 KNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRK 136
++ F F+ +D E +F+ + DGD L ++ + + EG +V++I
Sbjct: 97 RDGFGFLIPDDGSED--LFLSPSQMRLVFDGDRGLARVSGVDRRGR-REGVLVEVISRAH 153
Query: 137 NTVVGILEKSKNFAFVIPTG-SFGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGK 195
+VVG + +V P +++ + + A V ++IT W +P+G
Sbjct: 154 ESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGD 213
Query: 196 IIKILGSSTNSKNMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSII 253
+++++G+ ID + + + N+ +++ ++ E E D R +L +L +
Sbjct: 214 VVEVIGNYMAPGMEIDVALRSYDIPHVWPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFV 273
Query: 254 TIDGADAKDLDDAVYVE-----KLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVY 308
TIDG DA+D DDAVY E +L +G ++L VAIADVS YV+ + LD+EA+ RGNSVY
Sbjct: 274 TIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVY 333
Query: 309 LVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYK 368
+RV+PM P+E+SNG+CSLN ++L CEM ++ G +V+Y+ Y+ VI S R+TY
Sbjct: 334 FPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYN 393
Query: 369 DVNAILDGD-----KDLINEYSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILD 423
V+++L+ K L EY ++ LK + L K+L + TRG+IDFE E ++I
Sbjct: 394 KVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARHTRGAIDFETQETRIIFG 453
Query: 424 EDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELASIYRTHEKPDREKIVTLN 483
D K+ ++ R + K+IE+ M+AAN AE + + ++YR H+ P E++ L
Sbjct: 454 -DERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHDGPPPERLEKLR 512
Query: 484 EILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGL 543
L + G + + PK +Q ++ + L+ +LR+L QA Y+ E+ HFGL
Sbjct: 513 AFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGL 572
Query: 544 ASSHYTHFTSPIRRYSDLMVHRVLFSTIDNS------------------IKPFKEADLDE 585
YTHFTSPIRRY DL+VHR + S I + I P+ E L++
Sbjct: 573 NYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQ 632
Query: 586 IAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFE-TDEHIECS 644
+ + S TER A +A + V E+M+ RVGET ++T +F E TD ++E
Sbjct: 633 LGEQCSMTERRADEATRDVVNWLKCEFMKDRVGETFPGVITAVTGFGLFVELTDIYVEGL 692
Query: 645 WDITTAI-NYYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
++ +YY FD ++ + + + F LGD ++V + + DL
Sbjct: 693 VHVSALPGDYYHFDPVHHRLAGERTGRSFRLGDTIEVKVMRVDL 736
>gi|91213728|ref|YP_543714.1| putative enzyme [Escherichia coli UTI89]
gi|117626525|ref|YP_859848.1| exoribonuclease R, RNase R [Escherichia coli APEC O1]
gi|91075302|gb|ABE10183.1| putative enzyme [Escherichia coli UTI89]
gi|115515649|gb|ABJ03724.1| exoribonuclease R, RNase R [Escherichia coli APEC O1]
Length = 827
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 205/655 (31%), Positives = 345/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVAGLKEEVPEEAKVG-RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|118594776|ref|ZP_01552123.1| exoribonuclease II [Methylophilales bacterium HTCC2181]
gi|118440554|gb|EAV47181.1| exoribonuclease II [Methylophilales bacterium HTCC2181]
Length = 754
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 216/656 (32%), Positives = 362/656 (55%), Gaps = 14/656 (2%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G +++++K L + + G + F F+ ++ E+K+ +F+ E + + D
Sbjct: 78 GQILINRKDVLCIATKLSLIPGKVMGHPDGFGFLIPDNKEDKD-VFLSPREMSKVFNSDR 136
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
V++++T + + + EG +++I++ +VG + +S V +DI IP +
Sbjct: 137 VMIQVTGQDRKGR-LEGTIIEILDRANKVIVGRVVQSNGVTIVAAEDKRINQDILIPYDE 195
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
A+ +V VEIT KP GKIIK+LGS T+S I+ + + L +FS+EA+
Sbjct: 196 DMKAEEGQVVEVEITTQPSLREKPMGKIIKVLGSYTDSGIEIEIALRKHHLPYQFSSEAL 255
Query: 229 QQTKEIIKEEID---YSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
Q + E+ID R +L L ++TIDG A+D DDAVY E + N ++L+VAIAD
Sbjct: 256 NQANQF-GEKIDPKVIKGRIDLRELPLVTIDGETARDFDDAVYAEPIGN-EWRLVVAIAD 313
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS YV+ + LD EA RGNSVY RV+PM P+ +SNG+CSLN + ++L C+M ID
Sbjct: 314 VSSYVEMGSDLDKEALERGNSVYFPRRVIPMLPESLSNGLCSLNPQVDRLCMVCDMRIDA 373
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDK-DLINEYSDIYEMLKQMLELSKILRIK 404
G V +YE Y SV+ S R+TY V+ IL+ + L +Y ++ L + + K+L +
Sbjct: 374 SGLVTSYEFYSSVMNSKARLTYTIVDEILNKNNLQLTEKYGAVHGDLNNLQSVFKLLFNQ 433
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+++F+ E ++ DN K++ + R E +IIE+ M+AAN AE + ++
Sbjct: 434 RQKRGALEFDSTETSIVF-TDNGKIDHIKPIYRNEAHRIIEECMLAANVCSAEFLLDKDV 492
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
+++R HE P EK+ L L +FG + + K + ++IE+ ++ + L+ +
Sbjct: 493 DALFRNHETPTEEKLENLRGFLVEFGLFLDGGNKPTVKHYGQLIEQVANRPDAHLLQTVL 552
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLD 584
LR+++QA Y+ ++ HFGLA YTHFTSPIRRY DL+VHR + + +++ + D+
Sbjct: 553 LRSMQQAVYSDQNKGHFGLAYEAYTHFTSPIRRYPDLVVHRAIKAKVEH--RKLNIKDIA 610
Query: 585 EIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIFFETDE-HIEC 643
++ +H S TER A +A + +MQ ++GE + V G +F E D IE
Sbjct: 611 QLGEHCSGTERRADEATRDVESWLKCYFMQDKIGEVYDATVAGVTGFGLFVELDGIFIEG 670
Query: 644 SWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADLLTLEIAVVPLD 698
+T N Y+ FD+ + M + + LGD++ V + + DL T +I + +D
Sbjct: 671 LVHVTELGNDYFTFDKSKHAMIGERTHLSYRLGDRLKVKVVRVDLETSKIDLSLID 726
>gi|88804559|ref|ZP_01120079.1| ribonuclease R [Robiginitalea biformata HTCC2501]
gi|88785438|gb|EAR16607.1| ribonuclease R [Robiginitalea biformata HTCC2501]
Length = 727
Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 212/621 (34%), Positives = 347/621 (55%), Gaps = 26/621 (4%)
Query: 89 EEKEGIFIPKEEFNNALDGDTVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKN 148
E ++ +FI A DTV V++ +KKK K EG+VV+++E RKN VGI+++SK+
Sbjct: 100 ELEKDVFITSPNLGRAFHKDTVEVQLFQKKKGSK-PEGKVVRVVERRKNAFVGIVDQSKS 158
Query: 149 FAFVIPTGS-FGKDIYIPNSKIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSK 207
FAFV PT S DI++ + A +K+ V VEI W +D P GK+ ++LG
Sbjct: 159 FAFVRPTDSRMYTDIFVSLDDLNGAKDKEKVLVEIKSWPEDADSPYGKVTQVLGVPGEHN 218
Query: 208 NMIDALIYREGLSEKFSNEAMQQTKEIIKE--EIDYSNRKNLTNLSIITIDGADAKDLDD 265
I A++ GL +F E + + S R+++ + TID DAKD DD
Sbjct: 219 TEIHAILAEYGLPYEFPAEVEHYANSLDTRIHPNEVSKRRDMRDTLTFTIDPKDAKDFDD 278
Query: 266 AVYVEKLENGNYKLIVAIADVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGI 325
A+ +L+ G+Y++ + IADVSHY+ ++++L+ EA +R SVYLVDRV+PM P+ +SN
Sbjct: 279 ALSFRELDGGDYEIGIHIADVSHYLNEDSILEEEAYNRATSVYLVDRVVPMLPEILSNNA 338
Query: 326 CSLNEKEEKLTFSCEMEIDLKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINE-- 383
CSL E+K TFS +D + V + ++V S R Y++ +++ + I
Sbjct: 339 CSLRPHEDKYTFSAVFIMDDQARVKDQWFGRTVTHSNERFAYEEAQHVIETGRGSIPADI 398
Query: 384 ---------YSDIYEMLKQMLELSKILRIKKFTRGSIDFELPELKVILDEDNNKVEKVLL 434
+I + M +L++ +R + G+I F+ E+K LDE+NN V V
Sbjct: 399 SIRGKAYQISGEIVNAIYTMDQLARKMRKLRMQHGAISFDKVEVKFNLDEENNPV-GVFF 457
Query: 435 KDRGEGEKIIEDFMIAANETVAERIYWLELAS--IYRTHEKPDREKIVTLNEILSKFGYK 492
K+ + K+IE+FM+ AN VAE I + +YR H++PD +K++ LN I+ +FG++
Sbjct: 458 KESKDANKLIEEFMLLANRKVAEFIGKQQPKKTFVYRVHDEPDEDKLIALNGIVKRFGHQ 517
Query: 493 IPNFDNLH--PKQFQEIIERSKDKETSMLVHKTILRALKQARYTVEDISHFGLASSHYTH 550
+ NF N +++E K ++ LV +R++ +A YT ++I H+GLA +YTH
Sbjct: 518 L-NFKNKKNLNHSLNQLLEDVKGRKEQNLVDTLAIRSMSKASYTTDNIGHYGLAFDYYTH 576
Query: 551 FTSPIRRYSDLMVHRVLFSTIDNSIKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLV 610
FTSPIRRY D+MVHR+L + N K E ++ +H S+ E +A +AE +S++ +
Sbjct: 577 FTSPIRRYPDVMVHRLLHQYL-NGAKSAPETLYEDKCKHSSEMEALAAQAERDSIKYMQI 635
Query: 611 EYMQKRVGETLNVMVTGFAQKKIFFETDEHIECSWDI---TTAINYYAFDEENYCMRDTD 667
++MQ + +++G + I+ E E+ +C + +YY FDE+ Y +
Sbjct: 636 KFMQDHQDQEFTGVISGVTEWGIYVEIIEN-KCEGMVRIRDIKDDYYTFDEKQYALVGER 694
Query: 668 SDKVFYLGDKVDVVLKKADLL 688
KV+ LGD+V V++K +DL+
Sbjct: 695 RGKVYQLGDEVRVMVKNSDLI 715
>gi|75179450|ref|ZP_00699454.1| COG0557: Exoribonuclease R [Shigella boydii BS512]
Length = 827
Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 204/655 (31%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE VKG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
I A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL +Y+ + + L+++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-CRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E ++ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVAERPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S ER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
D+ I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|156932410|ref|YP_001436326.1| hypothetical protein ESA_00189 [Enterobacter sakazakii ATCC
BAA-894]
gi|156530664|gb|ABU75490.1| hypothetical protein ESA_00189 [Enterobacter sakazakii ATCC
BAA-894]
Length = 821
Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats.
Identities = 210/659 (31%), Positives = 351/659 (53%), Gaps = 30/659 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE KG ++ + F+ E K+ +++ E+ + GD
Sbjct: 66 GQLVFTRRQCYALPERLDLQKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDI 123
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ +++ +VG FV+P S DI IP +
Sbjct: 124 VLAQPLGSDRKGR-REARIVRVLVPKQSNIVGRYFTDAGVGFVVPDDSRLSFDILIPPEE 182
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLS---EKFSN 225
+ A +V VE+T K GKI+++LG + + +D + + K
Sbjct: 183 VMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKAVE 242
Query: 226 EAMQQTKEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
E + KE + EE R +L NL ++TIDG DA+D DDAV+ EK G ++L VAIAD
Sbjct: 243 EQIAHLKEEVPEEAKVG-RVDLRNLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIAD 301
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 302 VSYYVRPPTPLDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTISA 361
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V IL GD+DL ++Y + + L+++ L K L +
Sbjct: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDEDLRSQYQPLVKHLEELHTLYKALEEAR 421
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + +++++ R + K+IE+ MI AN + A + +
Sbjct: 422 TERGGISFESEEAKFIFNAE-RRIDRIEQTQRNDAHKLIEECMILANISAARFVEKHKEP 480
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H++P E I + +L++ G ++P + P+ + E+++ D+ ++ +L
Sbjct: 481 ALFRIHDRPTNEAITSFRSVLAELGLELPGGNKPEPRDYAELLDSIADRPDHEMLQTMLL 540
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T ++
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLIAKEQGHEGNTTESG 600
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVM---VTGFAQK 631
+ ++ ++ QH S TER A +A E ++MQ +VG+T + + VTGF
Sbjct: 601 GWHYTMEEMLQLGQHCSMTERRADEATREVADWLKCDFMQDQVGQTFSGVISSVTGFG-- 658
Query: 632 KIFFE--TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
FF TD I+ +++ N YY FD+ + + + LGD+V+V ++ ++
Sbjct: 659 --FFVRLTDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNM 715
>gi|157085054|gb|ABV14732.1| hypothetical protein CKO_03653 [Citrobacter koseri ATCC BAA-895]
Length = 824
Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 203/655 (30%), Positives = 346/655 (52%), Gaps = 22/655 (3%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEGIFIPKEEFNNALDGDT 109
G L+ ++ +LPE +KG ++ + F+ E K+ +++ E+ + GD
Sbjct: 80 GQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQ 137
Query: 110 VLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNSK 168
VL + + + E R+V+++ + + +VG FV+P S DI IP +
Sbjct: 138 VLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPPEE 196
Query: 169 IANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEAM 228
+ A +V VE+T K GKI+++LG + + +D + + +
Sbjct: 197 VMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQAVE 256
Query: 229 QQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIAD 285
QQ KE + EE + R +L +L ++TIDG DA+D DDAVY EK G ++L VAIAD
Sbjct: 257 QQIAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 315
Query: 286 VSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDL 345
VS+YV+ T LD EAR+RG SVY +V+PM P+ +SNG+CSLN + ++L CEM +
Sbjct: 316 VSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 375
Query: 346 KGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIKK 405
KG + Y+ Y++V+ S R+TY V +L GD+DL +Y+ + ++++ L K+L +
Sbjct: 376 KGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVRHIEELHNLYKVLDNAR 435
Query: 406 FTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLELA 465
RG I FE E K I + + ++E++ R + K+IE+ MI AN + A + +
Sbjct: 436 EERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 494
Query: 466 SIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTIL 525
+++R H+KP E I + +L++ G ++P + P+ + E++E D+ + ++ +L
Sbjct: 495 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL 554
Query: 526 RALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLF-----------STIDNS 574
R++KQA Y E+ HFGLA Y HFTSPIRRY DL +HR + +T +
Sbjct: 555 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAHEQGHKGNTTETG 614
Query: 575 IKPFKEADLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLNVMVTGFAQKKIF 634
+ ++ ++ QH S TER A +A + ++M +VG +++ F
Sbjct: 615 GYHYSMEEMLQLGQHCSMTERRADEATRDVSDWLKCDFMLDQVGNVFKGVISSVTGFGFF 674
Query: 635 FETDE-HIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKADL 687
DE I+ +++ N YY FD+ + S + + LGD+V+V ++ ++
Sbjct: 675 VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 729
>gi|84393178|ref|ZP_00991942.1| Exoribonuclease R [Vibrio splendidus 12B01]
gi|84376230|gb|EAP93114.1| Exoribonuclease R [Vibrio splendidus 12B01]
Length = 832
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 223/666 (33%), Positives = 343/666 (51%), Gaps = 30/666 (4%)
Query: 50 GDLIMDKKHRLSLPENSGYVKGVFRIIKNKFAFVDKEDSEEKEG-IFIPKEEFNNALDGD 108
G LI ++ +LPE +KG K+ +V + S K+ I +P + + GD
Sbjct: 80 GQLIFTRRQCYALPEKMELIKGYVIGHKDGHGWVRPDGSVGKDNDIVLPHHQMKTIMHGD 139
Query: 109 TVLVEITEKKKSDKGAEGRVVKIIEHRKNTVVGILEKSKNFAFVIPTGS-FGKDIYIPNS 167
VL + T+ K + EGR+V+++E RK +VG ++V+ S DI IP
Sbjct: 140 YVLAQPTDNSKRGR-REGRLVRVLEERKTPLVGRFFLEYGHSYVVADDSRISHDIQIPTE 198
Query: 168 KIANADNKDLVAVEITFWGDDDRKPEGKIIKILGSSTNSKNMIDALIYREGLSEKFSNEA 227
A ++V +EIT G R GK+ ++LG + I + +++
Sbjct: 199 HKGGARMGNVVVIEITDRGGRSRNMMGKVTEVLGENMAPGMETQIAIRTHQIPQEWPEAV 258
Query: 228 MQQT---KEIIKEEIDYSNRKNLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIA 284
+Q E + EE R +L L ++TIDG DA+D DDAVY E + G ++L VAIA
Sbjct: 259 DKQIVNLGEHVPEEAK-EGRVDLRKLPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIA 317
Query: 285 DVSHYVKKETVLDLEARHRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEID 344
DVS+YV+ +T LD EA +RGNSVY +V+PM P+ +SNG+CSLN + ++L CEM I
Sbjct: 318 DVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 377
Query: 345 LKGDVVNYEVYKSVIKSVHRMTYKDVNAILDGDKDLINEYSDIYEMLKQMLELSKILRIK 404
KG + Y+ Y++V+ S R+TY V AILDG+++L Y L+++ ++ K+L+
Sbjct: 378 DKGKLSGYKHYEAVMNSHARLTYNKVGAILDGNEELRERYEPEVPHLEELHKMYKVLKKT 437
Query: 405 KFTRGSIDFELPELKVILDEDNNKVEKVLLKDRGEGEKIIEDFMIAANETVAERIYWLEL 464
+ RG+I+FE E K I + D K++++ R + KIIE+ MI AN A + +
Sbjct: 438 RDERGAIEFETVETKFIFNAD-RKIDRIEPVIRNDAHKIIEECMILANIASASYVEKAKE 496
Query: 465 ASIYRTHEKPDREKIVTLNEILSKFGYKIPNFDNLHPKQFQEIIERSKDKETSMLVHKTI 524
++YR H+ P E++ LS+ G + + P + +++++ ++E L+ +
Sbjct: 497 PALYRVHDTPGEERLTGFKSFLSELGLTLEGGLSPSPVDYAQLMQQINEREDRELIQTML 556
Query: 525 LRALKQARYTVEDISHFGLASSHYTHFTSPIRRYSDLMVHRVLFSTIDNSIKPFKEA--- 581
LR++KQA Y ++ HFGLA Y HFTSPIRRY DL++HR + I E
Sbjct: 557 LRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRQSERWTP 616
Query: 582 ---------DLDEIAQHISKTERVAMKAEDESVRIKLVEYMQKRVGETLN---VMVTGFA 629
D+D + S TER A A E EYMQ VGE ++ VTGF
Sbjct: 617 TGGYHYTFDDMDFYGEQCSMTERRADDATREVNDWLKCEYMQDHVGEVMDGVIANVTGFG 676
Query: 630 QKKIFFE--TDEHIECSWDITTAIN-YYAFDEENYCMRDTDSDKVFYLGDKVDVVLKKAD 686
FF T+ HI+ I+ N YY FD + S ++ LGD V V + +
Sbjct: 677 ----FFVRLTELHIDGLVHISALANDYYQFDAVGQRLVGESSGNIYRLGDSVKVKVSAVN 732
Query: 687 LLTLEI 692
L T +I
Sbjct: 733 LETRQI 738
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.316 0.136 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,525,713,322
Number of Sequences: 5470121
Number of extensions: 111799021
Number of successful extensions: 346657
Number of sequences better than 1.0e-05: 500
Number of HSP's better than 0.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 339518
Number of HSP's gapped (non-prelim): 1819
length of query: 700
length of database: 1,894,087,724
effective HSP length: 140
effective length of query: 560
effective length of database: 1,128,270,784
effective search space: 631831639040
effective search space used: 631831639040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)