Reference SNP(refSNP) Cluster Report: rs32763325

Reference SNP(refSNP) Cluster Report: rs32763325

refSNP ID: rs32763325
Organism:	mouse (Mus musculus)
Molecule Type:	Genomic
Created/Updated in build:	125/128
Map to Genome Build:	37.1

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Strain:	not submitted
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss46188433 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs32763325 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss46188433	ABI\|mCV22815540	fwd/T	A/G	gtgtacaacattgttctcaaagatttcatg	gtcacagggccaacgatgtcatctgcctta	07/20/05	12/22/05	125	Genomic	unknown
ss59908596	ENSEMBL\|NT_110169.2_73554	fwd/T	A/G	gtgtacaacattgttctcaaagatttcatg	gtcacagggccaacgatgtcatctgcctta	06/13/06	06/13/06	127	Genomic	unknown
ss61077534	PERLEGEN\|NES16048669	fwd/T	A/G	gtgtacaacattgttctcaaagatttcatg	gtcacagggccaacgatgtcatctgcctta	06/22/06	06/22/06	127	Genomic	100 %

Fasta sequence (Legend)

 CTCTGTACCT ATAAGTAAGC CCACGTCTAT ACATAAGTAA CCACCAATAA AAAGTCATTG
 GCTCATCACC ACTTAGACTT TGGTAATATT CTTAGTTTGC TCTGTCATTT GGTCTCTACT
 TGGAGTGAGT AGACATTTGT TCACATCTCC CCCAGAATCG CACCATATAA CATCAAGACC
 TGGAATCCTT ACCTCATCAC CATATCGGCG ATAGCTCACT TCATATAGCA CAATCAGACC
 ATTAGGTTCC TTTGGCTCTT GCCACATTAA GTGTACAACA TTGTTCTCAA AGATTTCATG
 R
 GTCACAGGGC CAACGATGTC ATCTGCCTTA GCTATAAAAA GCAAGTAAAG GGTCAAATAT
 AACTCTTGAA TCAAATTCTA TTGCAGCCAC CAACATCTAA AAAGACCTGG TTAAAGCTGG
 CTATGTAATT TTTCCATGTC TTATTTTCTT CCGCAGAAAA TGTAAAACTC ATGGAGTAAG
 AAGATACCTC AGTCAGTAAA ACCTGAGTTC AATCCTTAGA ATCCACACAA AAGAGCTGAA
 ACATAGTGTT CTAAGAATCC CAATGTAGAA AAGACGGAGA CAAGCAGATC CCTCAAACTC

GeneView

GeneView via analysis of contig annotation: Insr insulin receptor

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

Celera

NW_001030882->NM_010568

function

C57BL/6J

NT_039455->NM_010568

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function	dbSNP allele	Protein residue	Codon pos	Amino acid pos


Celera	NW_001030882->NM_010568->NP_034698	100149	reverse	missense	C	Pro [P]	2	838
				contig reference	T	Leu [L]	2	838

C57BL/6J	NT_039455->NM_010568->NP_034698	173588	reverse	synonymous	C	Thr [T]	3	848
				contig reference	T	Thr [T]	3	848

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs32763325 maps exactly once on NCBI mouse chromosome 8

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
8	NT_039455.7	173588	3173588	plus	A	ref_strain	C57BL/6J	C57BL/6J	view	300
8	NW_001030882.1	100149	3399525	plus	A	alt_assembly_1	Celera	Celera	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_110169.2

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AC168068.3	AC087150.1 AC087153.1

3D structure mapping
NP_034698

Population Diversity

	Sample Ascertainment				Genotype Detail
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	G/G
ss46188433	CRAMUS_MOUSE		10	IG	3	2

ss61077534	MM_PANEL2		30	IG	13	2

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	-1.000+/-0	17	17	3	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .