BLAST Search Results
BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= HCMV011
(234 letters)
Database: nr
1,508,275 sequences; 485,782,529 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28373216|ref|NP_783769.1| RL11 [Human herpesvirus 5] >gnl|BL_... 477 e-134
gi|20026603|ref|NP_612645.1| IgG Fc-binding glycoprotein RL11 [C... 165 6e-40
gi|1167942|gb|AAA85895.1| orf UL153 46 4e-04
gi|17978656|gb|AAL47671.1| RL13/14 [human herpesvirus 5] 46 6e-04
>gi|28373216|ref|NP_783769.1| RL11 [Human herpesvirus 5]
gi|28373257|ref|NP_783800.1| RL11 [Human herpesvirus 5]
gi|124885|sp|P16809|IR11_HCMVA HYPOTHETICAL PROTEIN IRL11 (TRL11)
gi|76495|pir||S09760 hypothetical protein TRL11 precursor - human
cytomegalovirus (strain AD169)
gi|59602|emb|CAA35459.1| HCMVTRL11 = IRL11 [Human herpesvirus 5]
gi|1780919|emb|CAA35299.1| HCMVIRL11 = TRL11 [Human herpesvirus 5]
gi|27808722|tpg|DAA00092.1| TPA: RL11 [Human herpesvirus 5]
gi|27808859|tpg|DAA00229.1| TPA: RL11 [Human herpesvirus 5]
Length = 234
Score = 477 bits (1227), Expect = e-134
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MQTYSTPLTLVIVTSLFLFTTQGSSSNAVEPTKKPLKLANYRATCEDRTRTLVTRLNTSH 60
MQTYSTPLTLVIVTSLFLFTTQGSSSNAVEPTKKPLKLANYRATCEDRTRTLVTRLNTSH
Sbjct: 1 MQTYSTPLTLVIVTSLFLFTTQGSSSNAVEPTKKPLKLANYRATCEDRTRTLVTRLNTSH 60
Query: 61 HSVVWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYL 120
HSVVWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYL
Sbjct: 61 HSVVWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYL 120
Query: 121 LQDQYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRAIISDLKRQWSG 180
LQDQYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRAIISDLKRQWSG
Sbjct: 121 LQDQYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRAIISDLKRQWSG 180
Query: 181 LSLHCAWVSGMMIFVGALVICFLRSQRIGEQDAEHLRTDLDTEPLLLTVDGDLQ 234
LSLHCAWVSGMMIFVGALVICFLRSQRIGEQDAEHLRTDLDTEPLLLTVDGDLQ
Sbjct: 181 LSLHCAWVSGMMIFVGALVICFLRSQRIGEQDAEHLRTDLDTEPLLLTVDGDLQ 234
>gi|20026603|ref|NP_612645.1| IgG Fc-binding glycoprotein RL11
[Chimpanzee cytomegalovirus]
gi|19881031|gb|AAM00651.1|AF480884_3 IgG Fc-binding glycoprotein
RL11 [chimpanzee cytomegalovirus]
Length = 232
Score = 165 bits (417), Expect = 6e-40
Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 1/220 (0%)
Query: 8 LTLVIVTSLFLFTTQGSSSNAVEPTKKPLKLANYRATCEDRTRTLVTRLNTSHHSVVWQR 67
LTL V S + PL+L + TCE R RTL +RLNT+ HSV W R
Sbjct: 6 LTLKYVVSTAFCILSSAKPTPTTDALGPLRLRDTYTTCETRNRTLASRLNTTGHSVSWVR 65
Query: 68 YDIYSRYMRRMPPLCIITDAYKETTRQ-GGAAFACTRQNLTLYNLTVKDTGVYLLQDQYT 126
Y + + PLC ITDA TTR A F CTR ++TLYN+TV+D G+Y+L D+YT
Sbjct: 66 YALPGHKPTQTMPLCSITDAAHSTTRDVRKARFICTRHSMTLYNVTVEDMGMYVLTDEYT 125
Query: 127 GDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRAIISDLKRQWSGLSLHCA 186
GD E+FY I R+ C A TR F+ T +DL+ W +S+HCA
Sbjct: 126 GDAESFYFFIFSRAVCEAYATRCAFWKYLDNRCQTLKPAGTNPPPNDLRDWWLNISIHCA 185
Query: 187 WVSGMMIFVGALVICFLRSQRIGEQDAEHLRTDLDTEPLL 226
W++G++I V +LV LR +R+G Q+A ++ DTEPLL
Sbjct: 186 WIAGLLIIVASLVGFLLRLRRVGVQNAYRRLSNRDTEPLL 225
>gi|1167942|gb|AAA85895.1| orf UL153
Length = 278
Score = 46.2 bits (108), Expect = 4e-04
Identities = 38/150 (25%), Positives = 66/150 (43%), Gaps = 17/150 (11%)
Query: 64 VWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYLLQD 123
VW + + +Y R LC I Y T+ G C + +LT+YN+T + G Y+LQ
Sbjct: 124 VWHDIE-WIKYGPRAHQLCSIGHYYS-TSPLNGMCLDCNKTSLTIYNVTTEHAGKYVLQR 181
Query: 124 QYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRA-----IISDLKRQW 178
G E +YL + L P P + + + + +I +K
Sbjct: 182 YSDGKKENYYLTV--------LSGTATSSPIPDKCKTKEESDQHNSRTWDNVIKTVKNTN 233
Query: 179 SGLSLHCAWVSGMMIFVGALVICFLRSQRI 208
L +H W +G+++ V AL+ ++ S+R+
Sbjct: 234 IPLGIHAVW-AGIVVSV-ALIALYMGSRRV 261
>gi|17978656|gb|AAL47671.1| RL13/14 [human herpesvirus 5]
Length = 209
Score = 45.8 bits (107), Expect = 6e-04
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 61 HSVVWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYL 120
H+V W Y+ + M + Y +TT + F C +LT+YNLT K+ G Y
Sbjct: 53 HNVDWIHYEYPTHKMCEL-------GNYHQTTPRHDICFDCNDTSLTIYNLTTKNAGKYT 105
Query: 121 LQDQYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADR----AIISDLKR 176
+ + G E +Y+ + + F G V +S + +II +++
Sbjct: 106 RRHRDNGQEENYYVTV-------LIGDTTLFTLGTCPVRYKESTNTENTIGSSIIETIEK 158
Query: 177 QWSGLSLHCAWVSGMMIFVGALVICFLRSQRI 208
L +H W +G+++ V AL+ ++ S RI
Sbjct: 159 ANIPLGIHAVW-AGVVVSV-ALIALYMGSHRI 188
Database: nr
Posted date: Aug 27, 2003 10:37 AM
Number of letters in database: 485,782,529
Number of sequences in database: 1,508,275
Lambda K H
0.324 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,161,956
Number of Sequences: 1508275
Number of extensions: 8323328
Number of successful extensions: 23921
Number of sequences better than 1.0e-03: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23917
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 485,782,529
effective HSP length: 120
effective length of query: 114
effective length of database: 304,789,529
effective search space: 34746006306
effective search space used: 34746006306
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)