BLASTP 2.2.4 [Aug-26-2002]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HCMV011
         (234 letters)

Database: nr 
           1,508,275 sequences; 485,782,529 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28373216|ref|NP_783769.1| RL11 [Human herpesvirus 5] >gnl|BL_...   477   e-134
gi|20026603|ref|NP_612645.1| IgG Fc-binding glycoprotein RL11 [C...   165   6e-40
gi|1167942|gb|AAA85895.1| orf UL153                                    46   4e-04
gi|17978656|gb|AAL47671.1| RL13/14 [human herpesvirus 5]               46   6e-04

>gi|28373216|ref|NP_783769.1| RL11 [Human herpesvirus 5]
 gi|28373257|ref|NP_783800.1| RL11 [Human herpesvirus 5]
 gi|124885|sp|P16809|IR11_HCMVA HYPOTHETICAL PROTEIN IRL11 (TRL11)
 gi|76495|pir||S09760 hypothetical protein TRL11 precursor - human
           cytomegalovirus (strain AD169)
 gi|59602|emb|CAA35459.1| HCMVTRL11 = IRL11 [Human herpesvirus 5]
 gi|1780919|emb|CAA35299.1| HCMVIRL11 = TRL11 [Human herpesvirus 5]
 gi|27808722|tpg|DAA00092.1| TPA: RL11 [Human herpesvirus 5]
 gi|27808859|tpg|DAA00229.1| TPA: RL11 [Human herpesvirus 5]
          Length = 234

 Score =  477 bits (1227), Expect = e-134
 Identities = 234/234 (100%), Positives = 234/234 (100%)

Query: 1   MQTYSTPLTLVIVTSLFLFTTQGSSSNAVEPTKKPLKLANYRATCEDRTRTLVTRLNTSH 60
           MQTYSTPLTLVIVTSLFLFTTQGSSSNAVEPTKKPLKLANYRATCEDRTRTLVTRLNTSH
Sbjct: 1   MQTYSTPLTLVIVTSLFLFTTQGSSSNAVEPTKKPLKLANYRATCEDRTRTLVTRLNTSH 60

Query: 61  HSVVWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYL 120
           HSVVWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYL
Sbjct: 61  HSVVWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYL 120

Query: 121 LQDQYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRAIISDLKRQWSG 180
           LQDQYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRAIISDLKRQWSG
Sbjct: 121 LQDQYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRAIISDLKRQWSG 180

Query: 181 LSLHCAWVSGMMIFVGALVICFLRSQRIGEQDAEHLRTDLDTEPLLLTVDGDLQ 234
           LSLHCAWVSGMMIFVGALVICFLRSQRIGEQDAEHLRTDLDTEPLLLTVDGDLQ
Sbjct: 181 LSLHCAWVSGMMIFVGALVICFLRSQRIGEQDAEHLRTDLDTEPLLLTVDGDLQ 234



>gi|20026603|ref|NP_612645.1| IgG Fc-binding glycoprotein RL11
           [Chimpanzee cytomegalovirus]
 gi|19881031|gb|AAM00651.1|AF480884_3 IgG Fc-binding glycoprotein
           RL11 [chimpanzee cytomegalovirus]
          Length = 232

 Score =  165 bits (417), Expect = 6e-40
 Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 1/220 (0%)

Query: 8   LTLVIVTSLFLFTTQGSSSNAVEPTKKPLKLANYRATCEDRTRTLVTRLNTSHHSVVWQR 67
           LTL  V S        +          PL+L +   TCE R RTL +RLNT+ HSV W R
Sbjct: 6   LTLKYVVSTAFCILSSAKPTPTTDALGPLRLRDTYTTCETRNRTLASRLNTTGHSVSWVR 65

Query: 68  YDIYSRYMRRMPPLCIITDAYKETTRQ-GGAAFACTRQNLTLYNLTVKDTGVYLLQDQYT 126
           Y +      +  PLC ITDA   TTR    A F CTR ++TLYN+TV+D G+Y+L D+YT
Sbjct: 66  YALPGHKPTQTMPLCSITDAAHSTTRDVRKARFICTRHSMTLYNVTVEDMGMYVLTDEYT 125

Query: 127 GDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRAIISDLKRQWSGLSLHCA 186
           GD E+FY  I  R+ C A  TR  F+        T          +DL+  W  +S+HCA
Sbjct: 126 GDAESFYFFIFSRAVCEAYATRCAFWKYLDNRCQTLKPAGTNPPPNDLRDWWLNISIHCA 185

Query: 187 WVSGMMIFVGALVICFLRSQRIGEQDAEHLRTDLDTEPLL 226
           W++G++I V +LV   LR +R+G Q+A    ++ DTEPLL
Sbjct: 186 WIAGLLIIVASLVGFLLRLRRVGVQNAYRRLSNRDTEPLL 225



>gi|1167942|gb|AAA85895.1| orf UL153
          Length = 278

 Score = 46.2 bits (108), Expect = 4e-04
 Identities = 38/150 (25%), Positives = 66/150 (43%), Gaps = 17/150 (11%)

Query: 64  VWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYLLQD 123
           VW   + + +Y  R   LC I   Y  T+   G    C + +LT+YN+T +  G Y+LQ 
Sbjct: 124 VWHDIE-WIKYGPRAHQLCSIGHYYS-TSPLNGMCLDCNKTSLTIYNVTTEHAGKYVLQR 181

Query: 124 QYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADRA-----IISDLKRQW 178
              G  E +YL +        L       P P +    +  +   +     +I  +K   
Sbjct: 182 YSDGKKENYYLTV--------LSGTATSSPIPDKCKTKEESDQHNSRTWDNVIKTVKNTN 233

Query: 179 SGLSLHCAWVSGMMIFVGALVICFLRSQRI 208
             L +H  W +G+++ V AL+  ++ S+R+
Sbjct: 234 IPLGIHAVW-AGIVVSV-ALIALYMGSRRV 261



>gi|17978656|gb|AAL47671.1| RL13/14 [human herpesvirus 5]
          Length = 209

 Score = 45.8 bits (107), Expect = 6e-04
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 20/152 (13%)

Query: 61  HSVVWQRYDIYSRYMRRMPPLCIITDAYKETTRQGGAAFACTRQNLTLYNLTVKDTGVYL 120
           H+V W  Y+  +  M  +         Y +TT +    F C   +LT+YNLT K+ G Y 
Sbjct: 53  HNVDWIHYEYPTHKMCEL-------GNYHQTTPRHDICFDCNDTSLTIYNLTTKNAGKYT 105

Query: 121 LQDQYTGDVEAFYLIIHPRSFCRALETRRCFYPGPGRVVVTDSQEADR----AIISDLKR 176
            + +  G  E +Y+ +        +     F  G   V   +S   +     +II  +++
Sbjct: 106 RRHRDNGQEENYYVTV-------LIGDTTLFTLGTCPVRYKESTNTENTIGSSIIETIEK 158

Query: 177 QWSGLSLHCAWVSGMMIFVGALVICFLRSQRI 208
               L +H  W +G+++ V AL+  ++ S RI
Sbjct: 159 ANIPLGIHAVW-AGVVVSV-ALIALYMGSHRI 188



  Database: nr
    Posted date:  Aug 27, 2003 10:37 AM
  Number of letters in database: 485,782,529
  Number of sequences in database:  1,508,275
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,161,956
Number of Sequences: 1508275
Number of extensions: 8323328
Number of successful extensions: 23921
Number of sequences better than 1.0e-03: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23917
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 485,782,529
effective HSP length: 120
effective length of query: 114
effective length of database: 304,789,529
effective search space: 34746006306
effective search space used: 34746006306
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)