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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs9286374          
refSNP ID: rs9286374
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/C
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13531670 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9286374 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13531670SC_JCM|chr9.NT_079533.1_77333fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg10/31/0311/07/03119Genomicunknown
ss13595260BCM_SSAHASNP|chr9.NT_079533.1_77333fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg11/05/0311/22/03119Genomicunknown
ss14084799WUGSC_SSAHASNP|chr9.NT_079533.1_77333fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg11/05/0311/22/03119Genomicunknown
ss15973382SC_SNP|NT_079533.1_77333fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg11/17/0311/22/03120Genomicunknown
ss17267753CSHL-HAPMAP|CSHL-HuAA-200402.chr9.NT_079533.1_77333fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg02/17/0403/04/04120Genomicunknown
ss35130210SSAHASNP|TA-079.chr9_65805409fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg03/11/05125Genomicunknown
ss77738607HGSV|Cor12156_SNV_20070510.chr9_65805409fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg10/09/0710/14/07129Genomicunknown
ss80914337HGSV|Cor18507_SNV_20070510.chr9_65805409fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg11/26/0711/27/07130Genomicunknown
ss85809678HGSV|Cor19129_SNV_20070510.chr9_65805409fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg12/06/0712/10/07130Genomicunknown
ss94069604BCMHGSC_JDW|JWB-2597365fwd/TA/Cccaatggccacaagagcacagtcaagctgaaggcttggtgttcggttagagagggaaggg02/26/0803/05/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9286374|allelePos=201|totalLen=701|taxid=9606|snpclass=1|alleles='A/C'|mol=Genomic|build=130
 GAGTCTGAAC TCTACCAGAG GGCCATGGGC CAAGTGGAGG GTTTCAGCAG GAGAGCTGCC
 TCCCCTGTGG AGGCCAGGAT GGAGGAAGTG GAGTGGAGGC AGGGTGAGCA TCAGCTTCTC
 CACAGATGGG TGGAGAAGTG GTGGCAGCCT GAGCCACAGA GATGGCAGTG CCAATGGCCA
 CAAGAGCACA GTCAAGCTGA
 M
 AGGCTTGGTG TTCGGTTAGA GAGGGAAGGG AGCGGGGCAG CTCAGCGATG CCCTCAGGTC
 CTGGCTAGGG CAGCGGAATG ACTAGCGTGG GGCACAGCAg agaagctgtg aaagaatgga
 caaggaggcc ctttctggac atgttgagtg tgaggagccc gctagacact tgggtgggat
 ggccagtgag gaggcagctg gtcatgtggt ctCACTTACA GACACATTTG GAGGACAGCA
 AATCACAGAT GGTCATCTGA GCCATGGGCA TAGATGAGAG AGCTCAAGGA GAGGGTACAG
 ACTAAGAAGA GGGGCCCAAG AAAGCCAGCC TACAAAGCAA GAAACTGACA GCCAACCAGA
 TCCCCTAAGT AATCTGTTAA CCAAGGAACT AAATAGCTAA CAACTCACTA ATGCCTGTTT
 CTTTTCTTTT tctttttctt tctttttttt tttttttttt gagacagggt ctcactctgt
 cacccaggct gaagtgcagt

  GeneView back to top
GeneView via analysis of contig annotation: LOC730908 similar to Aquaporin-7 (AQP-7) (Aquaporin-7-like) (Aquaporin adipose) (AQPap)
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
HuRefNW_001838807->XM_001717938
function
HuRefNW_001838807->XM_001717941
function
CeleraNW_927964->XM_001129848
function
CeleraNW_927964->XM_001732809
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
HuRefNW_001838807->XM_001717938->XP_001717990855835reverseintron
HuRefNW_001838807->XM_001717941->XP_001717993855835reverseintron
CeleraNW_927964->XM_001129848->XP_001129848100146forwardintron
CeleraNW_927964->XM_001732809->XP_001732861100146forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9286374 maps exactly once on NCBI human chromosome 9
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
2NW_001838807.285583589286711plusCalt_assembly_8HuRefHuRefview200
2NW_927964.110014689607596minusGalt_assembly_1CeleraCeleraview200
9NT_079533.17733366974987plusAref_assemblyreferencereferenceview200

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_079533
dbSNP Blast Analysis
GenBank HTGS Finished:
AL845321.4

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .