BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SGO_0655
(179 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157075563|gb|ABV10246.1| VanZF domain protein [Streptoco... 333 3e-90
gi|125717486|ref|YP_001034619.1| hypothetical protein SSA_0... 319 4e-86
gi|24379005|ref|NP_720960.1| hypothetical protein SMU.523 [... 149 5e-35
gi|15900663|ref|NP_345267.1| VanZF-related protein [Strepto... 145 1e-33
gi|148997155|ref|ZP_01824809.1| VanZF-related protein [Stre... 145 1e-33
gi|111658341|ref|ZP_01409029.1| hypothetical protein SpneT_... 145 1e-33
gi|149021633|ref|ZP_01835664.1| VanZF-related protein [Stre... 145 1e-33
gi|148989850|ref|ZP_01821144.1| VanZF-related protein [Stre... 144 2e-33
gi|25010576|ref|NP_734971.1| hypothetical protein gbs0506 [... 144 2e-33
gi|76787256|ref|YP_329192.1| VanZ family protein [Streptoco... 144 2e-33
gi|22536638|ref|NP_687489.1| VanZF domain protein [Streptoc... 143 4e-33
gi|77408381|ref|ZP_00785121.1| VanZF domain protein [Strept... 143 5e-33
gi|15902721|ref|NP_358271.1| hypothetical protein spr0677 [... 142 6e-33
gi|149003388|ref|ZP_01828277.1| VanZF-related protein [Stre... 142 7e-33
gi|149007649|ref|ZP_01831266.1| VanZF-related protein [Stre... 142 1e-32
gi|148985882|ref|ZP_01818976.1| VanZF-related protein [Stre... 140 3e-32
gi|116515988|ref|YP_816164.1| conserved hypothetical, predi... 140 3e-32
gi|55821669|ref|YP_140111.1| Conserved hypothetical, predic... 140 4e-32
gi|55823589|ref|YP_142030.1| conserved hypothetical Region,... 140 4e-32
gi|146319328|ref|YP_001199040.1| Glycopeptide antibiotics r... 112 1e-23
gi|81097274|ref|ZP_00875572.1| VanZ like protein [Streptoco... 112 1e-23
gi|148992432|ref|ZP_01822127.1| conserved hypothetical, pre... 100 4e-20
gi|89209265|ref|ZP_01187709.1| VanZ like protein [Bacillus ... 57 6e-07
gi|118476592|ref|YP_893743.1| teicoplanin resistance protei... 54 4e-06
gi|42781742|ref|NP_978989.1| vanZ protein, putative [Bacill... 54 6e-06
gi|153954303|ref|YP_001395068.1| VanZ-related protein [Clos... 53 6e-06
gi|52142844|ref|YP_083985.1| teicoplanin resistance protein... 53 6e-06
gi|89205365|ref|ZP_01183935.1| VanZ like protein [Bacillus ... 53 8e-06
gi|30020789|ref|NP_832420.1| Teicoplanin resistance protein... 53 1e-05
>gi|157075563|gb|ABV10246.1| VanZF domain protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 179
Score = 333 bits (853), Expect = 3e-90, Method: Composition-based stats.
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MFSLKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVV 60
MFSLKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVV
Sbjct: 1 MFSLKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVV 60
Query: 61 LLVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFG 120
LLVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFG
Sbjct: 61 LLVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFG 120
Query: 121 MSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQKIWKNRQDDVFKRD 179
MSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQKIWKNRQDDVFKRD
Sbjct: 121 MSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQKIWKNRQDDVFKRD 179
>gi|125717486|ref|YP_001034619.1| hypothetical protein SSA_0629 [Streptococcus sanguinis SK36]
gi|125497403|gb|ABN44069.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 179
Score = 319 bits (818), Expect = 4e-86, Method: Composition-based stats.
Identities = 167/179 (93%), Positives = 173/179 (96%)
Query: 1 MFSLKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVV 60
MFSLKNYLTSDGELTAKGR+LL+GGSWLYFLMLC+LCFIPQVPEPGMETPG+QYFGRIVV
Sbjct: 1 MFSLKNYLTSDGELTAKGRKLLVGGSWLYFLMLCILCFIPQVPEPGMETPGIQYFGRIVV 60
Query: 61 LLVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFG 120
LL+PFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLL LFPKLRKTKK+VWLSFG
Sbjct: 61 LLIPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLCLFPKLRKTKKIVWLSFG 120
Query: 121 MSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQKIWKNRQDDVFKRD 179
MSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWR FQLGQK WKNRQ D FK D
Sbjct: 121 MSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRAFQLGQKNWKNRQGDAFKTD 179
>gi|24379005|ref|NP_720960.1| hypothetical protein SMU.523 [Streptococcus mutans UA159]
gi|24376897|gb|AAN58266.1|AE014897_12 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 178
Score = 149 bits (377), Expect = 5e-35, Method: Composition-based stats.
Identities = 82/164 (50%), Positives = 111/164 (67%), Gaps = 8/164 (4%)
Query: 7 YLTSDGELTAKGRRLLIGGSWL----YFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLL 62
+ EL GR+L SWL YF+ +C +CF PQ G++TP +Q+FGR+V+L
Sbjct: 4 FFDETAELKPIGRKL----SWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILP 59
Query: 63 VPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMS 122
VPFNS ++G +++ ++L+ VF QN+ NIFLL PL+ Q+L LFP LR KK++ SF +S
Sbjct: 60 VPFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLS 119
Query: 123 LSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQK 166
LSIE TQ+LLD + NRVFEIDDLWTN+LGG LA+ QK
Sbjct: 120 LSIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQK 163
>gi|15900663|ref|NP_345267.1| VanZF-related protein [Streptococcus pneumoniae TIGR4]
gi|14972244|gb|AAK74907.1| VanZF-related protein [Streptococcus pneumoniae TIGR4]
Length = 159
Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Query: 21 LLIGGSWLYFLMLCVLCFIPQVPEP-GMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQ 79
+L+ G Y + + CF PQ G+ TPG+Q+ GR+V LL PFNS +GE++ Q
Sbjct: 8 ILVWGVIFYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQ 67
Query: 80 LVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINAN 139
L +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + N
Sbjct: 68 LCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFN 127
Query: 140 RVFEIDDLWTNTLGGYLAWRVFQ 162
RVFEIDDLWTNTLGGYLAW +++
Sbjct: 128 RVFEIDDLWTNTLGGYLAWLLYK 150
>gi|148997155|ref|ZP_01824809.1| VanZF-related protein [Streptococcus pneumoniae SP11-BS70]
gi|147756855|gb|EDK63895.1| VanZF-related protein [Streptococcus pneumoniae SP11-BS70]
Length = 160
Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Query: 21 LLIGGSWLYFLMLCVLCFIPQVPEP-GMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQ 79
+L+ G Y + + CF PQ G+ TPG+Q+ GR+V LL PFNS +GE++ Q
Sbjct: 9 ILVWGVIFYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQ 68
Query: 80 LVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINAN 139
L +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + N
Sbjct: 69 LCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFN 128
Query: 140 RVFEIDDLWTNTLGGYLAWRVFQ 162
RVFEIDDLWTNTLGGYLAW +++
Sbjct: 129 RVFEIDDLWTNTLGGYLAWLLYK 151
>gi|111658341|ref|ZP_01409029.1| hypothetical protein SpneT_02000481 [Streptococcus pneumoniae
TIGR4]
gi|149010605|ref|ZP_01831976.1| VanZF-related protein [Streptococcus pneumoniae SP19-BS75]
gi|147765086|gb|EDK72015.1| VanZF-related protein [Streptococcus pneumoniae SP19-BS75]
Length = 160
Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Query: 21 LLIGGSWLYFLMLCVLCFIPQVPEP-GMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQ 79
+L+ G Y + + CF PQ G+ TPG+Q+ GR+V LL PFNS +GE++ Q
Sbjct: 9 ILVWGVIFYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQ 68
Query: 80 LVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINAN 139
L +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + N
Sbjct: 69 LCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFN 128
Query: 140 RVFEIDDLWTNTLGGYLAWRVFQ 162
RVFEIDDLWTNTLGGYLAW +++
Sbjct: 129 RVFEIDDLWTNTLGGYLAWLLYK 151
>gi|149021633|ref|ZP_01835664.1| VanZF-related protein [Streptococcus pneumoniae SP23-BS72]
gi|147930094|gb|EDK81080.1| VanZF-related protein [Streptococcus pneumoniae SP23-BS72]
Length = 160
Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Query: 21 LLIGGSWLYFLMLCVLCFIPQVPEP-GMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQ 79
+L+ G Y + + CF PQ G+ TPG+Q+ GR+V LL PFNS +GE++ Q
Sbjct: 9 ILVWGVIFYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQ 68
Query: 80 LVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINAN 139
L +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + N
Sbjct: 69 LCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFN 128
Query: 140 RVFEIDDLWTNTLGGYLAWRVFQ 162
RVFEIDDLWTNTLGGYLAW +++
Sbjct: 129 RVFEIDDLWTNTLGGYLAWLLYK 151
>gi|148989850|ref|ZP_01821144.1| VanZF-related protein [Streptococcus pneumoniae SP6-BS73]
gi|147924792|gb|EDK75876.1| VanZF-related protein [Streptococcus pneumoniae SP6-BS73]
Length = 160
Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Query: 21 LLIGGSWLYFLMLCVLCFIPQVPEP-GMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQ 79
+L+ G Y + + CF PQ G+ TPG+Q+ GR+V LL PFNS +GE++ Q
Sbjct: 9 ILVWGVIFYSICIVYFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQ 68
Query: 80 LVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINAN 139
L +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + N
Sbjct: 69 LCWIFLQNVLNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFN 128
Query: 140 RVFEIDDLWTNTLGGYLAWRVFQ 162
RVFEIDDLWTNTLGGYLAW +++
Sbjct: 129 RVFEIDDLWTNTLGGYLAWLLYK 151
>gi|25010576|ref|NP_734971.1| hypothetical protein gbs0506 [Streptococcus agalactiae NEM316]
gi|77413562|ref|ZP_00789750.1| VanZF domain protein [Streptococcus agalactiae 515]
gi|23094929|emb|CAD46150.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160391|gb|EAO71514.1| VanZF domain protein [Streptococcus agalactiae 515]
Length = 171
Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats.
Identities = 87/154 (56%), Positives = 108/154 (70%)
Query: 4 LKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLV 63
LK LT DGELT RR + +Y L++ +CF PQ+ G+ TP VQ FGRIV LLV
Sbjct: 2 LKRLLTEDGELTKISRRFVWMLVVIYCLIIVRMCFGPQIMIEGVSTPNVQRFGRIVALLV 61
Query: 64 PFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSL 123
PFNSF ++ ++TS+ ++ V QN+ NI LL PLI LL L P LRK K V+ L+F MSL
Sbjct: 62 PFNSFRSLDQLTSFKEIFWVIGQNVVNILLLFPLIIGLLSLKPSLRKYKSVILLAFLMSL 121
Query: 124 SIEVTQILLDLLINANRVFEIDDLWTNTLGGYLA 157
IE TQ++LD+LI+ANRVFEIDDLWTNTLGG A
Sbjct: 122 FIECTQVVLDILIDANRVFEIDDLWTNTLGGPFA 155
>gi|76787256|ref|YP_329192.1| VanZ family protein [Streptococcus agalactiae A909]
gi|77405602|ref|ZP_00782692.1| VanZF domain protein [Streptococcus agalactiae H36B]
gi|77411418|ref|ZP_00787764.1| VanZF domain protein [Streptococcus agalactiae CJB111]
gi|76562313|gb|ABA44897.1| VanZ family protein [Streptococcus agalactiae A909]
gi|77162504|gb|EAO73469.1| VanZF domain protein [Streptococcus agalactiae CJB111]
gi|77175824|gb|EAO78603.1| VanZF domain protein [Streptococcus agalactiae H36B]
Length = 171
Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats.
Identities = 87/154 (56%), Positives = 108/154 (70%)
Query: 4 LKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLV 63
LK LT DGELT RR + +Y L++ +CF PQ+ G+ TP VQ FGRIV LLV
Sbjct: 2 LKRLLTEDGELTKISRRFVWMLVIIYCLIIVRMCFGPQIMIEGVSTPNVQRFGRIVALLV 61
Query: 64 PFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSL 123
PFNSF ++ ++TS+ ++ V QN+ NI LL PLI LL L P LRK K V+ L+F MSL
Sbjct: 62 PFNSFRSLDQLTSFKEIFWVIGQNVVNILLLFPLIIGLLSLKPSLRKYKSVILLAFLMSL 121
Query: 124 SIEVTQILLDLLINANRVFEIDDLWTNTLGGYLA 157
IE TQ++LD+LI+ANRVFEIDDLWTNTLGG A
Sbjct: 122 FIECTQVVLDILIDANRVFEIDDLWTNTLGGPFA 155
>gi|22536638|ref|NP_687489.1| VanZF domain protein [Streptococcus agalactiae 2603V/R]
gi|76797754|ref|ZP_00780021.1| VanZF domain protein [Streptococcus agalactiae 18RS21]
gi|22533476|gb|AAM99361.1|AE014212_20 VanZF domain protein [Streptococcus agalactiae 2603V/R]
gi|76586902|gb|EAO63393.1| VanZF domain protein [Streptococcus agalactiae 18RS21]
Length = 171
Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats.
Identities = 86/154 (55%), Positives = 108/154 (70%)
Query: 4 LKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLV 63
LK LT DGELT RR + +Y L++ +CF PQ+ G+ TP VQ FGRIV LLV
Sbjct: 2 LKRLLTEDGELTKISRRFVWMLVIIYCLIIVRMCFGPQIMIEGVSTPNVQRFGRIVALLV 61
Query: 64 PFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSL 123
PFNSF ++ ++TS+ ++ V QN+ NI LL PLI LL L P LRK K V+ L+F MS+
Sbjct: 62 PFNSFRSLDQLTSFKEIFWVIGQNVVNILLLFPLIIGLLSLKPSLRKYKSVILLAFLMSI 121
Query: 124 SIEVTQILLDLLINANRVFEIDDLWTNTLGGYLA 157
IE TQ++LD+LI+ANRVFEIDDLWTNTLGG A
Sbjct: 122 FIECTQVVLDILIDANRVFEIDDLWTNTLGGPFA 155
>gi|77408381|ref|ZP_00785121.1| VanZF domain protein [Streptococcus agalactiae COH1]
gi|77172984|gb|EAO76113.1| VanZF domain protein [Streptococcus agalactiae COH1]
Length = 171
Score = 143 bits (360), Expect = 5e-33, Method: Composition-based stats.
Identities = 86/154 (55%), Positives = 107/154 (69%)
Query: 4 LKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLV 63
LK T DGELT RR + +Y L++ +CF PQ+ G+ TP VQ FGRIV LLV
Sbjct: 2 LKRLFTEDGELTKISRRFVWMLVVIYCLIIVRMCFGPQIMIEGVSTPNVQRFGRIVALLV 61
Query: 64 PFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSL 123
PFNSF ++ ++TS+ ++ V QN+ NI LL PLI LL L P LRK K V+ L+F MSL
Sbjct: 62 PFNSFRSLDQLTSFKEIFWVIGQNVVNILLLFPLIIGLLSLKPSLRKYKSVILLAFLMSL 121
Query: 124 SIEVTQILLDLLINANRVFEIDDLWTNTLGGYLA 157
IE TQ++LD+LI+ANRVFEIDDLWTNTLGG A
Sbjct: 122 FIECTQVVLDILIDANRVFEIDDLWTNTLGGPFA 155
>gi|15902721|ref|NP_358271.1| hypothetical protein spr0677 [Streptococcus pneumoniae R6]
gi|15458265|gb|AAK99481.1| Hypothetical protein [Streptococcus pneumoniae R6]
Length = 155
Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats.
Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 3/149 (2%)
Query: 14 LTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLVPFNSFVNIGE 73
+T K +L G +Y L + CF PQ TPG+Q+ GR+V LL PFNS +GE
Sbjct: 1 MTKKRELILRLGVAVYSLCIVYFCFTPQEQS---GTPGIQHLGRLVFLLTPFNSLWKLGE 57
Query: 74 ITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLD 133
++ QL +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD
Sbjct: 58 VSDIGQLCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILD 117
Query: 134 LLINANRVFEIDDLWTNTLGGYLAWRVFQ 162
+ NRVFEIDDLWTNTLGGYLAW +++
Sbjct: 118 FFFDFNRVFEIDDLWTNTLGGYLAWLLYK 146
>gi|149003388|ref|ZP_01828277.1| VanZF-related protein [Streptococcus pneumoniae SP14-BS69]
gi|147758571|gb|EDK65569.1| VanZF-related protein [Streptococcus pneumoniae SP14-BS69]
Length = 160
Score = 142 bits (359), Expect = 7e-33, Method: Composition-based stats.
Identities = 77/143 (53%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Query: 21 LLIGGSWLYFLMLCVLCFIPQVPEP-GMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQ 79
+L+ G Y + + CF PQ G+ TP +Q+ GR+V LL PFNS +GE++ Q
Sbjct: 9 ILVWGVIFYSICIVCFCFTPQEQSTVGVGTPDIQHLGRLVFLLTPFNSLWKLGEVSDIGQ 68
Query: 80 LVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINAN 139
L +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + N
Sbjct: 69 LCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFN 128
Query: 140 RVFEIDDLWTNTLGGYLAWRVFQ 162
RVFEIDDLWTNTLGGYLAW +++
Sbjct: 129 RVFEIDDLWTNTLGGYLAWLLYK 151
>gi|149007649|ref|ZP_01831266.1| VanZF-related protein [Streptococcus pneumoniae SP18-BS74]
gi|147760804|gb|EDK67775.1| VanZF-related protein [Streptococcus pneumoniae SP18-BS74]
Length = 160
Score = 142 bits (357), Expect = 1e-32, Method: Composition-based stats.
Identities = 77/143 (53%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Query: 21 LLIGGSWLYFLMLCVLCFIPQVPEP-GMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQ 79
+L+ G Y + + CF PQ G+ TP +Q+ GR+V LL PFNS +GE++ Q
Sbjct: 9 ILVWGVIFYSICIVYFCFTPQEQSTVGVGTPDIQHLGRLVFLLTPFNSLWKLGEVSDIGQ 68
Query: 80 LVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINAN 139
L +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + N
Sbjct: 69 LCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFN 128
Query: 140 RVFEIDDLWTNTLGGYLAWRVFQ 162
RVFEIDDLWTNTLGGYLAW +++
Sbjct: 129 RVFEIDDLWTNTLGGYLAWLLYK 151
>gi|148985882|ref|ZP_01818976.1| VanZF-related protein [Streptococcus pneumoniae SP3-BS71]
gi|147922028|gb|EDK73152.1| VanZF-related protein [Streptococcus pneumoniae SP3-BS71]
Length = 160
Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Query: 21 LLIGGSWLYFLMLCVLCFIPQVPEP-GMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQ 79
+L+ G Y + + CF PQ G+ TP +Q+ GR+V LL PFNS +GE++ Q
Sbjct: 9 ILVWGVIFYSICIVYFCFTPQEQSTVGVGTPDIQHLGRLVFLLTPFNSLWKLGEVSDIGQ 68
Query: 80 LVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINAN 139
L +F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + N
Sbjct: 69 LCWIFLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFN 128
Query: 140 RVFEIDDLWTNTLGGYLAWRVFQ 162
RVFEIDDLWTNTLGGYL+W +++
Sbjct: 129 RVFEIDDLWTNTLGGYLSWLLYK 151
>gi|116515988|ref|YP_816164.1| conserved hypothetical, predicted membrane protein [Streptococcus
pneumoniae D39]
gi|116076564|gb|ABJ54284.1| conserved hypothetical, predicted membrane protein [Streptococcus
pneumoniae D39]
Length = 143
Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/135 (56%), Positives = 97/135 (71%), Gaps = 3/135 (2%)
Query: 28 LYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLVPFNSFVNIGEITSWIQLVKVFIQN 87
+Y L + CF PQ TPG+Q+ GR+V LL PFNS +GE++ QL +F+QN
Sbjct: 3 VYSLCIVYFCFTPQEQS---GTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIFLQN 59
Query: 88 LANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINANRVFEIDDL 147
+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + NRVFEIDDL
Sbjct: 60 ILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEIDDL 119
Query: 148 WTNTLGGYLAWRVFQ 162
WTNTLGGYLAW +++
Sbjct: 120 WTNTLGGYLAWLLYK 134
>gi|55821669|ref|YP_140111.1| Conserved hypothetical, predicted membrane protein (TMS4)
[Streptococcus thermophilus LMG 18311]
gi|116628381|ref|YP_821000.1| Glycopeptide antibiotics resistance protein [Streptococcus
thermophilus LMD-9]
gi|55737654|gb|AAV61296.1| Conserved hypothetical, predicted membrane protein (TMS4)
[Streptococcus thermophilus LMG 18311]
gi|116101658|gb|ABJ66804.1| Glycopeptide antibiotics resistance protein [Streptococcus
thermophilus LMD-9]
Length = 175
Score = 140 bits (352), Expect = 4e-32, Method: Composition-based stats.
Identities = 88/168 (52%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Query: 1 MFSLKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVP-EPGMETPGVQYFGRIV 59
MF L ++ +GELT KGR+L Y L L +LC+ PQ G+ETPG+Q+FGR+V
Sbjct: 1 MFRLTTWVDKNGELTPKGRKLSQVLVCSYLLCLVLLCWTPQYGLVEGVETPGIQHFGRVV 60
Query: 60 VLLVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSF 119
VLL PFNS N ++ S ++V V QN+ NIFLLSPLI LL L+P+ R KKV+ +
Sbjct: 61 VLLTPFNSLTNFNQLDSLKEIVFVLGQNVTNIFLLSPLILGLLALYPRFRSWKKVLVATL 120
Query: 120 GMSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQKI 167
MSL+IE+ Q++LDLLI+ANRVFE+DDLWTNTLGG +A ++L K+
Sbjct: 121 AMSLTIEIGQVILDLLIDANRVFELDDLWTNTLGGLVALGAYRLLVKL 168
>gi|55823589|ref|YP_142030.1| conserved hypothetical Region, VanZF-related [Streptococcus
thermophilus CNRZ1066]
gi|55739574|gb|AAV63215.1| conserved hypothetical Region, VanZF-related [Streptococcus
thermophilus CNRZ1066]
Length = 175
Score = 140 bits (352), Expect = 4e-32, Method: Composition-based stats.
Identities = 88/168 (52%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Query: 1 MFSLKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVP-EPGMETPGVQYFGRIV 59
MF L ++ +GELT KGR+L Y L L +LC+ PQ G+ETPG+Q+FGR+V
Sbjct: 1 MFRLTTWVDKNGELTPKGRKLSQVLVCSYLLCLVLLCWTPQYRLVEGVETPGIQHFGRVV 60
Query: 60 VLLVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSF 119
VLL PFNS N ++ S ++V V QN+ NIFLLSPLI LL L+P+ R KKV+ +
Sbjct: 61 VLLTPFNSLTNFNQLDSLKEIVFVLGQNVTNIFLLSPLILGLLALYPRFRSWKKVLVATL 120
Query: 120 GMSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQKI 167
MSL+IE+ Q++LDLLI+ANRVFE+DDLWTNTLGG +A ++L K+
Sbjct: 121 AMSLTIEIGQVILDLLIDANRVFELDDLWTNTLGGLVALGAYRLLVKL 168
>gi|146319328|ref|YP_001199040.1| Glycopeptide antibiotics resistance protein [Streptococcus suis
05ZYH33]
gi|146321532|ref|YP_001201243.1| Glycopeptide antibiotics resistance protein [Streptococcus suis
98HAH33]
gi|145690134|gb|ABP90640.1| Glycopeptide antibiotics resistance protein [Streptococcus suis
05ZYH33]
gi|145692338|gb|ABP92843.1| Glycopeptide antibiotics resistance protein [Streptococcus suis
98HAH33]
Length = 175
Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats.
Identities = 77/163 (47%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
Query: 4 LKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEP---GMETPGVQYFGRIVV 60
++ + +DG LT GR++ + Y L + +LCF+PQ P TPG+ GR+ +
Sbjct: 1 MRKFFQADGNLTKLGRQICKTLAGAYALAIVLLCFLPQTWYPQYKDFSTPGIIQIGRLYL 60
Query: 61 LLVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFG 120
L PFNS VN ++ S L +F+QN+ NIFLL PLIF LL+L + R + V+ SF
Sbjct: 61 LPTPFNSIVNGDKVDSLADLGWIFLQNITNIFLLFPLIFLLLFLREEWRSLRAVIRYSFC 120
Query: 121 MSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQL 163
+SL IE TQ+LLDLLI+A RVFEIDDLWTNT+GG LA+ + L
Sbjct: 121 ISLFIECTQLLLDLLIDAQRVFEIDDLWTNTMGGILAYFSYSL 163
>gi|81097274|ref|ZP_00875572.1| VanZ like protein [Streptococcus suis 89/1591]
gi|80976682|gb|EAP40267.1| VanZ like protein [Streptococcus suis 89/1591]
Length = 175
Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats.
Identities = 77/163 (47%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
Query: 4 LKNYLTSDGELTAKGRRLLIGGSWLYFLMLCVLCFIPQVPEP---GMETPGVQYFGRIVV 60
++ + +DG LT GR++ + Y L + +LCF+PQ P TPG+ GR+ +
Sbjct: 1 MRKFFQADGNLTMLGRQICKTLAGAYALAIVLLCFLPQTWYPQYKDFSTPGIIQIGRLYL 60
Query: 61 LLVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFG 120
L PFNS VN ++ S L +F+QN+ NIFLL PLIF LL+L + R + V+ SF
Sbjct: 61 LPTPFNSIVNGDKVDSLADLGWIFLQNITNIFLLFPLIFLLLFLREEWRSLRAVIRYSFC 120
Query: 121 MSLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQL 163
+SL IE TQ+LLDLLI+A RVFEIDDLWTNT+GG LA+ + L
Sbjct: 121 ISLFIECTQLLLDLLIDAQRVFEIDDLWTNTMGGILAYFTYSL 163
>gi|148992432|ref|ZP_01822127.1| conserved hypothetical, predicted membrane protein [Streptococcus
pneumoniae SP9-BS68]
gi|147928749|gb|EDK79762.1| conserved hypothetical, predicted membrane protein [Streptococcus
pneumoniae SP9-BS68]
Length = 91
Score = 100 bits (249), Expect = 4e-20, Method: Composition-based stats.
Identities = 53/79 (67%), Positives = 65/79 (82%)
Query: 84 FIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINANRVFE 143
F+QN+ N+FL PLIFQLL+LFP LRKTKKV+ SF +SL IE TQ++LD + NRVFE
Sbjct: 4 FLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFE 63
Query: 144 IDDLWTNTLGGYLAWRVFQ 162
IDDLWTNTLGGYLAW +++
Sbjct: 64 IDDLWTNTLGGYLAWLLYK 82
>gi|89209265|ref|ZP_01187709.1| VanZ like protein [Bacillus weihenstephanensis KBAB4]
gi|89152803|gb|EAR72928.1| VanZ like protein [Bacillus weihenstephanensis KBAB4]
Length = 210
Score = 56.6 bits (135), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 82/149 (55%), Gaps = 8/149 (5%)
Query: 26 SWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLVPFNSFV-NIGEITSW-----IQ 79
S+L+ + +C++ + P P V+ R V ++PF S + +IG+I S +
Sbjct: 41 SFLFAVYICMVVAVTLFPLPIGFPSSVENLNR-SVNIIPFASIIKDIGQIGSTYDGDVLF 99
Query: 80 LVKVFIQNLA-NIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINA 138
++ + ++N+ N+ LL PL F ++ K +K K + L F +S+SIE+ Q++ L+
Sbjct: 100 MIGLIVRNVGGNVLLLMPLGFLAPLIWNKFKKVKNTILLGFIISVSIELLQLIESLVSEG 159
Query: 139 NRVFEIDDLWTNTLGGYLAWRVFQLGQKI 167
R+ +IDD+ N LG + + ++++ K+
Sbjct: 160 GRITDIDDVICNVLGSIIGYSIYKITLKL 188
>gi|118476592|ref|YP_893743.1| teicoplanin resistance protein [Bacillus thuringiensis str. Al
Hakam]
gi|118415817|gb|ABK84236.1| teicoplanin resistance protein [Bacillus thuringiensis str. Al
Hakam]
Length = 211
Score = 53.9 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 9/79 (11%)
Query: 88 LANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINANRVFEIDDL 147
L NI L P F L ++P+ RK K V F SL+IE+ Q+L NR+ +IDDL
Sbjct: 91 LLNIVLFMPFGFLLPTIWPQFRKMKNTVCAGFFFSLAIELNQLL------NNRITDIDDL 144
Query: 148 WTNTLG---GYLAWRVFQL 163
+TNTLG GYL +R F++
Sbjct: 145 FTNTLGAIIGYLLYRAFKM 163
>gi|42781742|ref|NP_978989.1| vanZ protein, putative [Bacillus cereus ATCC 10987]
gi|42737665|gb|AAS41597.1| vanZ protein, putative [Bacillus cereus ATCC 10987]
Length = 210
Score = 53.5 bits (127), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 26 SWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLVPFNSFV-NIGEITSWIQ----- 79
S+L+ + +C++ + P P ++ R V ++ PF S + +I +I S
Sbjct: 41 SFLFVVYICMIVAVTLFPLPIGFPSNIENLNRSVNMM-PFVSIIKDINQIGSAYDGDSQF 99
Query: 80 LVKVFIQNLA-NIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINA 138
++ + ++N+ NI LL PL F + L+ K +K K + L F +S+SIE+ Q++ L
Sbjct: 100 MIGLIVRNVGGNILLLMPLGFLVPILWNKYKKFKNTILLGFSISISIELLQLIESLFSGV 159
Query: 139 NRVFEIDDLWTNTLGGYLAWRVFQLGQKI 167
R+ +IDD+ N LG + ++++ K+
Sbjct: 160 GRITDIDDVICNVLGSIFGYFIYKISLKM 188
>gi|153954303|ref|YP_001395068.1| VanZ-related protein [Clostridium kluyveri DSM 555]
gi|146347184|gb|EDK33720.1| VanZ-related protein [Clostridium kluyveri DSM 555]
Length = 218
Score = 53.1 bits (126), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 18/115 (15%)
Query: 62 LVPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGM 121
L+PFNS ++ G +T +LANI + PL F L +++ + + KV+ +
Sbjct: 86 LIPFNS-ISGGIMT-----------HLANIIMFIPLGFLLPFIWRQFKSPWKVIGTALLF 133
Query: 122 SLSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQKIWKNRQDDVF 176
SL IE++Q+L R +IDDL NT+G +L W ++ L +K++KNR + F
Sbjct: 134 SLIIELSQLL------NMRSTDIDDLIMNTIGAFLGWTIYSLLKKLFKNRHEKEF 182
>gi|52142844|ref|YP_083985.1| teicoplanin resistance protein [Bacillus cereus E33L]
gi|51976313|gb|AAU17863.1| teicoplanin resistance protein [Bacillus cereus E33L]
Length = 210
Score = 53.1 bits (126), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 8/145 (5%)
Query: 26 SWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLVPFNSFV-NIGEITSW-----IQ 79
S+L+ + +C++ + P P ++ R V ++PF S + +I +I S +
Sbjct: 41 SFLFLVYICMVVAVTLFPLPIGFPSNIENLNR-SVNIIPFASIIKDINQIGSAYDGDALF 99
Query: 80 LVKVFIQNLA-NIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINA 138
++ + ++N+ NI LL PL F L+ K +K K + L F +S SIE+ Q++ L
Sbjct: 100 MIGIIVRNVGGNILLLMPLGFLAPILWDKYKKFKNTILLGFSISTSIELLQLIQSLFSGV 159
Query: 139 NRVFEIDDLWTNTLGGYLAWRVFQL 163
R+ +IDD+ N +G L + ++++
Sbjct: 160 GRITDIDDVICNVIGCILGYFIYKI 184
>gi|89205365|ref|ZP_01183935.1| VanZ like protein [Bacillus weihenstephanensis KBAB4]
gi|89156610|gb|EAR76608.1| VanZ like protein [Bacillus weihenstephanensis KBAB4]
Length = 208
Score = 52.8 bits (125), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 88 LANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINANRVFEIDDL 147
L NI L P F L ++P+ RK K V F SL+IE+ Q+L NR+ +IDDL
Sbjct: 91 LLNIVLFMPFGFLLPTIWPQFRKMKNTVCAGFFFSLAIELNQLL------NNRITDIDDL 144
Query: 148 WTNTLGGYLAWRVFQLGQKIWK 169
+TNTLG + + ++++ KI+K
Sbjct: 145 FTNTLGAIVGYVIYRVLFKIFK 166
>gi|30020789|ref|NP_832420.1| Teicoplanin resistance protein vanZ [Bacillus cereus ATCC 14579]
gi|29896341|gb|AAP09621.1| Teicoplanin resistance protein vanZ [Bacillus cereus ATCC 14579]
Length = 208
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 26 SWLYFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLLVPFNSFV-NIGEITSW-----IQ 79
S+L+ + +C++ + P P V+ R V ++PF S + +I +I S +
Sbjct: 39 SFLFVVYICMVVAVTLFPLPIGFPSNVENLNR-SVNIIPFASIIKDINQIGSAYDGDALF 97
Query: 80 LVKVFIQNLA-NIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMSLSIEVTQILLDLLINA 138
++ + ++N+ NI LL PL F L+ K +K K + L F +S SIE+ Q++ L
Sbjct: 98 MIGLIVRNVGGNILLLMPLGFLAPILWDKYKKFKNTILLGFSISASIELLQLIESLFSGV 157
Query: 139 NRVFEIDDLWTNTLG---GYLAWRVF 161
R+ +IDD+ N LG GY + +F
Sbjct: 158 GRITDIDDVICNVLGSIFGYCIYNIF 183
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.329 0.145 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 691,373,396
Number of Sequences: 5470121
Number of extensions: 26265337
Number of successful extensions: 102788
Number of sequences better than 1.0e-05: 40
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 102745
Number of HSP's gapped (non-prelim): 41
length of query: 179
length of database: 1,894,087,724
effective HSP length: 124
effective length of query: 55
effective length of database: 1,215,792,720
effective search space: 66868599600
effective search space used: 66868599600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)