BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PG0223
(63 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61097786|dbj|BAD91033.1| hypothetical protein [Porphyrom... 117 2e-25
gi|34540094|ref|NP_904573.1| hypothetical protein PG0246 [P... 113 4e-24
gi|150007601|ref|YP_001302344.1| hypothetical protein BDI_0... 97 2e-19
gi|154492255|ref|ZP_02031881.1| hypothetical protein PARMER... 94 2e-18
gi|29346312|ref|NP_809815.1| hypothetical protein BT_0902 [... 93 4e-18
gi|153806296|ref|ZP_01958964.1| hypothetical protein BACCAC... 93 6e-18
gi|156861085|gb|EDO54516.1| hypothetical protein BACUNI_019... 89 1e-16
gi|53713705|ref|YP_099697.1| hypothetical protein BF2414 [B... 88 1e-16
gi|150005801|ref|YP_001300545.1| hypothetical protein BVU_3... 85 1e-15
>gi|61097786|dbj|BAD91033.1| hypothetical protein [Porphyromonas gingivalis]
Length = 84
Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE
Sbjct: 22 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 81
Query: 61 ANA 63
ANA
Sbjct: 82 ANA 84
>gi|34540094|ref|NP_904573.1| hypothetical protein PG0246 [Porphyromonas gingivalis W83]
gi|34396405|gb|AAQ65472.1| hypothetical protein PG_0246 [Porphyromonas gingivalis W83]
Length = 63
Score = 113 bits (282), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE
Sbjct: 1 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
Query: 61 ANA 63
ANA
Sbjct: 61 ANA 63
>gi|150007601|ref|YP_001302344.1| hypothetical protein BDI_0954 [Parabacteroides distasonis ATCC
8503]
gi|149936025|gb|ABR42722.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 90
Score = 97.4 bits (241), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/60 (76%), Positives = 53/60 (88%)
Query: 2 QRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGEA 61
QRIADELGL+VETVRNYFGG NF++GRSCG HIE GP+GG+V LDDTTI ERAL +L E+
Sbjct: 23 QRIADELGLKVETVRNYFGGHNFQDGRSCGFHIEPGPDGGLVVLDDTTIFERALQILAES 82
>gi|154492255|ref|ZP_02031881.1| hypothetical protein PARMER_01889 [Parabacteroides merdae ATCC
43184]
gi|154087480|gb|EDN86525.1| hypothetical protein PARMER_01889 [Parabacteroides merdae ATCC
43184]
Length = 105
Score = 94.0 bits (232), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/59 (72%), Positives = 51/59 (86%)
Query: 2 QRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
RIADELG+ VETVRNYFGG NF++G+SCG+HIE GP+GG+V LDDTTI ERAL +L E
Sbjct: 37 HRIADELGISVETVRNYFGGHNFKDGKSCGIHIEPGPDGGLVVLDDTTIFERALQILAE 95
>gi|29346312|ref|NP_809815.1| hypothetical protein BT_0902 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338207|gb|AAO76009.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 96
Score = 93.2 bits (230), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/62 (67%), Positives = 53/62 (85%)
Query: 1 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
M RIADELGL V+TVRN+FGG NF+EG+S G+H+E GP+GG+V LDDTT+L+RAL +L E
Sbjct: 21 MHRIADELGLHVDTVRNFFGGHNFKEGKSVGIHLEPGPDGGLVMLDDTTVLDRALKILDE 80
Query: 61 AN 62
N
Sbjct: 81 IN 82
>gi|153806296|ref|ZP_01958964.1| hypothetical protein BACCAC_00552 [Bacteroides caccae ATCC 43185]
gi|149130973|gb|EDM22179.1| hypothetical protein BACCAC_00552 [Bacteroides caccae ATCC 43185]
gi|156111789|gb|EDO13534.1| hypothetical protein BACOVA_00726 [Bacteroides ovatus ATCC 8483]
Length = 96
Score = 92.8 bits (229), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/62 (67%), Positives = 53/62 (85%)
Query: 1 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
M RIADELGL V+TVRN+FGG NF+EG+S G+H+E GP+GG+V LDDTT+L+RAL +L E
Sbjct: 21 MHRIADELGLHVDTVRNFFGGHNFKEGKSVGIHLEPGPDGGLVMLDDTTVLDRALKILDE 80
Query: 61 AN 62
N
Sbjct: 81 LN 82
>gi|156861085|gb|EDO54516.1| hypothetical protein BACUNI_01992 [Bacteroides uniformis ATCC
8492]
Length = 93
Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/60 (68%), Positives = 52/60 (86%)
Query: 1 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
M RIADELGL V+TVRN+FGG NF+EG+S G+H+E GP+GG+V +DDTT+LERAL +L E
Sbjct: 23 MHRIADELGLNVDTVRNFFGGHNFKEGKSVGIHLEPGPDGGLVMIDDTTVLERALKILDE 82
>gi|53713705|ref|YP_099697.1| hypothetical protein BF2414 [Bacteroides fragilis YCH46]
gi|60681976|ref|YP_212120.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|52216570|dbj|BAD49163.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60493410|emb|CAH08196.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343]
Length = 94
Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/62 (64%), Positives = 52/62 (83%)
Query: 1 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
M RIADEL L V+TVRN+FGG NF+EG+S G+H+E GP+GG+V +DDTT+L+RAL +L E
Sbjct: 21 MHRIADELNLNVDTVRNFFGGHNFKEGKSVGIHLEPGPDGGLVMIDDTTVLDRALRILDE 80
Query: 61 AN 62
N
Sbjct: 81 LN 82
>gi|150005801|ref|YP_001300545.1| hypothetical protein BVU_3294 [Bacteroides vulgatus ATCC 8482]
gi|149934225|gb|ABR40923.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 89
Score = 84.7 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 50/60 (83%)
Query: 1 MQRIADELGLRVETVRNYFGGANFREGRSCGVHIEAGPEGGIVELDDTTILERALSMLGE 60
M RIADEL + VETVRN+FGG NF+ G+S G+H+E GP+GG+V LDDTT+LE+AL +L E
Sbjct: 21 MHRIADELNMTVETVRNFFGGHNFKNGKSVGIHLEPGPDGGLVMLDDTTVLEKALQILRE 80
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.139 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,153,869
Number of Sequences: 5470121
Number of extensions: 7323357
Number of successful extensions: 17145
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17136
Number of HSP's gapped (non-prelim): 9
length of query: 63
length of database: 1,894,087,724
effective HSP length: 35
effective length of query: 28
effective length of database: 1,702,633,489
effective search space: 47673737692
effective search space used: 47673737692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)