NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs28711893          
refSNP ID: rs28711893
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:125/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_015892.2:c.1347+1091G>A
NT_030059.12:g.44528207C>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss35493152 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs28711893 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss35493152SSAHASNP|TA-079.chr10_125769671fwd/BC/Ttcatgcaggggacatagtggcaagaatgaagcaggaatgcaagacagacccatcacaaca03/11/05125Genomicunknown
ss39799696ABI|hCV27397502fwd/BC/Ttcatgcaggggacatagtggcaagaatgaagcaggaatgcaagacagacccatcacaaca07/16/0507/16/05126Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs28711893|allelePos=501|totalLen=871|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=126
 TTAGTCTTTT ATTATAGGTG CCTCAGCCAT GAACACAGTA GTGAGATATT CCTTTTCCAC
 TCCTACACTA TCTTCTGCTT AAAACCCTCT GAGGGGTCCC ATCTCTCTCA GGGTGATGTC
 TAGACTTCTT CTGAGGCTAG ACCAGGTGGT GCGGCCCCAT GTGCCACGCA CCCAAGCCCC
 CTGCCTCAGT GCCCCCCATC TCCCACACCA GGCGGCTGGC TGCGTTCTGT ATGGTAGGTG
 GTGCTGACCA CTGGGCCTCT GCACACGCTG CTCTCAGTTC CCTGGCCAAC TCTCCTTCAG
 GCCTCAGCAC AGACATTCCC TCTCCTAAGA ACCTGCCTGA AGCCCCGTTC TCAGGTGGTT
 CTCTGGTGGC CAGAGCTCCC TGCCCAGCCT CCATCTTCTC TCCCCGCCAG CTGCACAGGA
 AGGCAAGGAC CACACCTGTC CTGGCATTGC TGTGGCCCCA GGACCCAGCG TCATGCAGGG
 GACATAGTGG CAAGAATGAA
 Y
 GCAGGAATGC AAGACAGACC CATCACAACA GCCTGGTACA GCAGCATTAT TACCCCATTG
 TATGACAAAG CAACTGAGTC TCAGAAAGGC TGAGACAACT GCCTAGAGTC ACAGAGCCAG
 CAAATGGCCA AGCTGGAAAC CTGACCCACA CCAATGGCTG GTTCCAAAGT GTACTCCTCC
 TACCTGGCAC CAGAGCAGGC TCTGGGGTTA CCTGTGTCCC TGTGGCATCT TCCTTGCCAA
 ACTACAAAGT CCAACAGGGC AGCCTGGAAT CCCACCTGCT GCCCCTGCAT GCTGCCTCCC
 AGATCCCACG GCCTCTGTAG TAAGAAAGAG GGGGCAGAGC CTCTTGGCCT GAAGTCCCAC
 CACCTGGGGG

  GeneView back to top
GeneView via analysis of contig annotation: GALNAC4S-6ST B cell RAG associated protein
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_030059->NM_015892
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_030059->NM_015892->NP_05697644528207reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs28711893 maps exactly once on NCBI human chromosome 10
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
10NW_001838008.2100141119394792minusGalt_assembly_8HuRefHuRefview500
10NW_924884.136487000119484183plusCalt_assembly_1CeleraCeleraview500
10NT_030059.1244528207125769671plusCref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis
GenBank HTGS Finished:
AL683842.11

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .