BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu1776
(98 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24380302|ref|NP_722257.1| hypothetical protein SMU.1956c... 169 6e-41
gi|125717101|ref|YP_001034234.1| hypothetical protein SSA_0... 121 1e-26
gi|157076024|gb|ABV10707.1| conserved hypothetical protein ... 117 3e-25
gi|116494119|ref|YP_805853.1| Predicted membrane protein [L... 93 6e-18
gi|88866540|gb|ABD57318.1| hypothetical protein [Lactobacil... 92 7e-18
gi|45125101|emb|CAF33352.1| levX protein [Lactobacillus casei] 92 8e-18
gi|58082016|dbj|BAD88631.1| PTS system component [Lactobaci... 92 8e-18
gi|42519529|ref|NP_965459.1| hypothetical protein LJ1652 [L... 85 1e-15
gi|116618368|ref|YP_818739.1| Predicted membrane protein [L... 60 4e-08
>gi|24380302|ref|NP_722257.1| hypothetical protein SMU.1956c [Streptococcus mutans UA159]
gi|24378316|gb|AAN59563.1|AE015019_8 hypothetical protein SMU_1956c [Streptococcus mutans UA159]
Length = 98
Score = 169 bits (427), Expect = 6e-41, Method: Composition-based stats.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MLTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLFSANLVGFTIGIVLT 60
MLTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLFSANLVGFTIGIVLT
Sbjct: 1 MLTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLFSANLVGFTIGIVLT 60
Query: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLRLANSK 98
ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLRLANSK
Sbjct: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLRLANSK 98
>gi|125717101|ref|YP_001034234.1| hypothetical protein SSA_0224 [Streptococcus sanguinis SK36]
gi|125497018|gb|ABN43684.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 96
Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats.
Identities = 68/95 (71%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Query: 2 LTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLF-SANLVGFTIGIVLT 60
+TE+E I+GYE EI YQKHMIENLGRWF+L F IASIG+VLIYLF NL+ GIVL
Sbjct: 1 MTEQELIQGYETEIHYQKHMIENLGRWFSLFFAIASIGLVLIYLFHETNLLALIAGIVLA 60
Query: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLRLA 95
LG L+MLVFGYGIY+GRLN+QKV+DDFE KL+LA
Sbjct: 61 LLGILSMLVFGYGIYRGRLNLQKVIDDFEAKLKLA 95
>gi|157076024|gb|ABV10707.1| conserved hypothetical protein [Streptococcus gordonii str.
Challis substr. CH1]
Length = 96
Score = 117 bits (292), Expect = 3e-25, Method: Composition-based stats.
Identities = 64/94 (68%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
Query: 2 LTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLF-SANLVGFTIGIVLT 60
+TE+E I+GYE EI YQKHMIENLGRWF+L F IASIG+VLIY F N++ F +GI+L
Sbjct: 1 MTEQELIQGYETEIHYQKHMIENLGRWFSLFFTIASIGLVLIYFFRQTNMILFIVGIILA 60
Query: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLRL 94
+G LAMLVFGYGIYKGRLN+QKV+DDFE K+++
Sbjct: 61 VIGILAMLVFGYGIYKGRLNLQKVIDDFEAKIQI 94
>gi|116494119|ref|YP_805853.1| Predicted membrane protein [Lactobacillus casei ATCC 334]
gi|116104269|gb|ABJ69411.1| Predicted membrane protein [Lactobacillus casei ATCC 334]
Length = 110
Score = 92.8 bits (229), Expect = 6e-18, Method: Composition-based stats.
Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 2 LTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLFSANLVGFTI-GIVLT 60
+T E KGYE E+AYQKHM++NLG WF L I++ +G+VLIY F + I GIVL
Sbjct: 1 MTIDEMTKGYEKEVAYQKHMLKNLGYWFQLCTILSGVGIVLIYFFHGKTLWLNIVGIVLI 60
Query: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLRLANSK 98
LG L ML+FGY +KG+ NV+ VVDD+++K++ K
Sbjct: 61 VLGALGMLMFGYSGWKGQQNVRAVVDDYDKKIKYFQKK 98
>gi|88866540|gb|ABD57318.1| hypothetical protein [Lactobacillus paracasei]
Length = 110
Score = 92.4 bits (228), Expect = 7e-18, Method: Composition-based stats.
Identities = 49/98 (50%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 2 LTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLFSANLVGFTI-GIVLT 60
+T E KGYE E+AYQKHM++NLG WF L I++ +G+VLIY F + I GIVL
Sbjct: 1 MTIDEMTKGYEKEVAYQKHMLKNLGYWFQLCTILSGVGIVLIYFFHGKTLWLNIVGIVLL 60
Query: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLRLANSK 98
LG L ML+FGY +KG+ NV+ VVDD+++K++ K
Sbjct: 61 VLGALGMLMFGYSGWKGQQNVRAVVDDYDKKIKYFQKK 98
>gi|45125101|emb|CAF33352.1| levX protein [Lactobacillus casei]
Length = 105
Score = 92.4 bits (228), Expect = 8e-18, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Query: 2 LTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLFSANLVGFTI-GIVLT 60
+T E KGYE E+AYQKHM++NLG WF L I++ +G+VLIY F + I GIVL
Sbjct: 1 MTIDEMTKGYEKEVAYQKHMLKNLGYWFQLCTILSGVGIVLIYFFHGKTLWLNIVGIVLL 60
Query: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLR 93
LG L ML+FGY +KG+ NV+ VVDD+++K+R
Sbjct: 61 VLGALGMLMFGYSGWKGQQNVRAVVDDYDKKIR 93
>gi|58082016|dbj|BAD88631.1| PTS system component [Lactobacillus casei]
Length = 110
Score = 92.0 bits (227), Expect = 8e-18, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Query: 2 LTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLFSANLVGFTI-GIVLT 60
+T E KGYE E+AYQKHM++NLG WF L I++ +G+VLIY F + I GIVL
Sbjct: 1 MTIDEMTKGYEKEVAYQKHMLKNLGYWFQLCTILSGVGIVLIYFFHGKTLWLNIVGIVLL 60
Query: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLR 93
LG L ML+FGY +KG+ NV+ VVDD+++K++
Sbjct: 61 VLGALGMLMFGYSGWKGQQNVRAVVDDYDKKIK 93
>gi|42519529|ref|NP_965459.1| hypothetical protein LJ1652 [Lactobacillus johnsonii NCC 533]
gi|41583818|gb|AAS09425.1| hypothetical protein LJ_1652 [Lactobacillus johnsonii NCC 533]
Length = 102
Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 2 LTEKEFIKGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLFSA-NLVGFTIGIVLT 60
+T +E KGY NE+ YQK M++NL WF L F+I++IGVVLIY F A L F IGIVL
Sbjct: 1 MTIEELRKGYVNEVNYQKKMLKNLKTWFNLFFMISAIGVVLIYYFHAKTLWLFIIGIVLF 60
Query: 61 ALGFLAMLVFGYGIYKGRLNVQKVVDDFEEKLRLANSK 98
LG L M +FGYG +KGR N+ ++DD+++K+ + K
Sbjct: 61 VLGSLGMSIFGYGQWKGRQNLNLLIDDYQQKVTIFTKK 98
>gi|116618368|ref|YP_818739.1| Predicted membrane protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097215|gb|ABJ62366.1| Predicted membrane protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 97
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 9 KGYENEIAYQKHMIENLGRWFTLMFIIASIGVVLIYLF-SANLVGFTIGIVLTALGFLAM 67
KGY++EI+YQ+ MI+NL W + +I + ++L Y F N+ F G+VL + L +
Sbjct: 10 KGYQSEISYQQKMIKNLQHWQSFFSMIVGLSILLTYFFVHRNVWLFGTGLVLGTINILIV 69
Query: 68 LVFGYGIYKGRLNVQKVVDDFEEKLR 93
+ GY IY+G+ NV +V+ ++E ++
Sbjct: 70 FIIGYAIYRGQQNVSVIVERYDELVK 95
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.329 0.146 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,440,796
Number of Sequences: 5470121
Number of extensions: 10739336
Number of successful extensions: 61661
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 61645
Number of HSP's gapped (non-prelim): 9
length of query: 98
length of database: 1,894,087,724
effective HSP length: 67
effective length of query: 31
effective length of database: 1,527,589,617
effective search space: 47355278127
effective search space used: 47355278127
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)