BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF2770
(84 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34541198|ref|NP_905677.1| hypothetical protein PG1537 [P... 87 3e-16
gi|150009012|ref|YP_001303755.1| hypothetical protein BDI_2... 83 6e-15
gi|154494346|ref|ZP_02033666.1| hypothetical protein PARMER... 80 3e-14
gi|86131191|ref|ZP_01049790.1| hypothetical protein MED134_... 69 6e-11
gi|156862420|gb|EDO55851.1| hypothetical protein BACUNI_005... 66 8e-10
gi|88804840|ref|ZP_01120360.1| hypothetical protein RB2501_... 65 2e-09
gi|89889578|ref|ZP_01201089.1| hypothetical protein BBFL7_0... 64 2e-09
gi|86134975|ref|ZP_01053557.1| hypothetical protein MED152_... 63 7e-09
gi|153807126|ref|ZP_01959794.1| hypothetical protein BACCAC... 62 8e-09
gi|150003739|ref|YP_001298483.1| hypothetical protein BVU_1... 62 1e-08
gi|156109957|gb|EDO11702.1| hypothetical protein BACOVA_029... 62 1e-08
gi|88801887|ref|ZP_01117415.1| hypothetical protein PI23P_0... 61 2e-08
gi|126662978|ref|ZP_01733976.1| hypothetical protein FBBAL3... 61 2e-08
gi|29348620|ref|NP_812123.1| hypothetical protein BT_3211 [... 60 3e-08
gi|149371951|ref|ZP_01891270.1| hypothetical protein SCB49_... 60 4e-08
gi|91217026|ref|ZP_01253989.1| hypothetical protein P700755... 60 4e-08
gi|86143829|ref|ZP_01062205.1| hypothetical protein MED217_... 60 5e-08
gi|83856329|ref|ZP_00949858.1| hypothetical protein CA2559_... 59 6e-08
gi|120437361|ref|YP_863047.1| conserved hypothetical protei... 59 1e-07
gi|150026389|ref|YP_001297215.1| hypothetical protein FP235... 56 6e-07
gi|60679663|ref|YP_209807.1| hypothetical protein BF0067 [B... 56 7e-07
gi|88713989|ref|ZP_01108068.1| hypothetical protein FB2170_... 55 1e-06
gi|153806258|ref|ZP_01958926.1| hypothetical protein BACCAC... 54 3e-06
>gi|34541198|ref|NP_905677.1| hypothetical protein PG1537 [Porphyromonas gingivalis W83]
gi|34397514|gb|AAQ66576.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
Length = 99
Score = 87.0 bits (214), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/73 (61%), Positives = 54/73 (73%)
Query: 6 FGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILMVF 65
FGK NFI +GVS LII+GF LMSGGGS D +SFNP+IFS +RI IAP V+M GF+LMV+
Sbjct: 27 FGKKNFILMGVSAILIILGFILMSGGGSADQVSFNPDIFSAKRIQIAPWVSMAGFVLMVY 86
Query: 66 AILKGDKKTAEHK 78
AI+ K K
Sbjct: 87 AIMVSPDKKDNRK 99
>gi|150009012|ref|YP_001303755.1| hypothetical protein BDI_2408 [Parabacteroides distasonis ATCC
8503]
gi|149937436|gb|ABR44133.1| putative membrane protein [Parabacteroides distasonis ATCC 8503]
Length = 79
Score = 82.8 bits (203), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/71 (60%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
+DFAFGK NFI + V+V I++GF LMSGGGS D +FNP+IFS +RIV+AP+VT++GF+
Sbjct: 4 RDFAFGKENFILIAVAVACIVLGFILMSGGGSGDN-TFNPDIFSARRIVVAPVVTVIGFV 62
Query: 62 LMVFAILKGDK 72
+M+F ILK K
Sbjct: 63 MMIFGILKNSK 73
>gi|154494346|ref|ZP_02033666.1| hypothetical protein PARMER_03701 [Parabacteroides merdae ATCC
43184]
gi|154085790|gb|EDN84835.1| hypothetical protein PARMER_03701 [Parabacteroides merdae ATCC
43184]
Length = 80
Score = 80.1 bits (196), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/71 (63%), Positives = 57/71 (80%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
+DFAFGK NFI + V+V +I +GF LMSGGGS+D FNPEIFS +RIV+AP VT++GF+
Sbjct: 4 RDFAFGKENFILIAVAVAVIAIGFMLMSGGGSQDPTGFNPEIFSSRRIVVAPAVTVIGFV 63
Query: 62 LMVFAILKGDK 72
LM+F ILK K
Sbjct: 64 LMIFGILKNSK 74
>gi|86131191|ref|ZP_01049790.1| hypothetical protein MED134_09726 [Cellulophaga sp. MED134]
gi|85818602|gb|EAQ39762.1| hypothetical protein MED134_09726 [Dokdonia donghaensis MED134]
Length = 87
Score = 69.3 bits (168), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 3 DFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFIL 62
+F FGK NF W+ + + +I +GF LMSGGGS D FNPEI+S +RI +AP V ++GF +
Sbjct: 15 EFIFGKKNFTWMLIGLGVIALGFILMSGGGSDDPNVFNPEIYSWRRIRLAPAVILIGFGI 74
Query: 63 MVFAIL 68
V+AIL
Sbjct: 75 EVYAIL 80
>gi|156862420|gb|EDO55851.1| hypothetical protein BACUNI_00517 [Bacteroides uniformis ATCC
8492]
Length = 79
Score = 65.9 bits (159), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
+ FAF K+NFI +G+ + ++I+GF LM+G S +F P+IFS +RI +AP+V ++GF+
Sbjct: 4 EKFAFDKTNFILLGIGMAVVIIGFLLMTGPASTP-TTFEPDIFSVRRIKVAPVVCLLGFV 62
Query: 62 LMVFAILKGDK 72
M++A+L+ K
Sbjct: 63 FMIYAVLRKPK 73
>gi|88804840|ref|ZP_01120360.1| hypothetical protein RB2501_08300 [Robiginitalea biformata
HTCC2501]
gi|88785719|gb|EAR16888.1| hypothetical protein RB2501_08300 [Robiginitalea biformata
HTCC2501]
Length = 90
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
++F F K N+I + V + I +G+ LM+GGGS D FNPEIFS +RI +AP + ++G
Sbjct: 15 REFIFQKRNYILMAVGLGFIALGYILMAGGGSDDPNVFNPEIFSFRRIRLAPTLVLIGLG 74
Query: 62 LMVFAILKGDKK 73
+ V+AIL K
Sbjct: 75 IQVYAILANPHK 86
>gi|89889578|ref|ZP_01201089.1| hypothetical protein BBFL7_01395 [Flavobacteria bacterium BBFL7]
gi|89517851|gb|EAS20507.1| hypothetical protein BBFL7_01395 [Flavobacteria bacterium BBFL7]
Length = 101
Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 3 DFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFIL 62
+F F K N++W+ + + +II GFALMSGGGS + FN IFS +RI +AP + ++GF +
Sbjct: 31 EFIFKKKNYMWMIIGLVVIITGFALMSGGGSDNPEVFNEAIFSWRRIRLAPTLVLLGFGI 90
Query: 63 MVFAIL 68
++AIL
Sbjct: 91 EMYAIL 96
>gi|86134975|ref|ZP_01053557.1| hypothetical protein MED152_09685 [Tenacibaculum sp. MED152]
gi|85821838|gb|EAQ42985.1| hypothetical protein MED152_09685 [Polaribacter dokdonensis
MED152]
Length = 80
Score = 62.8 bits (151), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 3 DFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFIL 62
+F FGK N+I + + + I VGF MSGGGS D FN EI++ QRI +AP + ++G +
Sbjct: 10 EFLFGKRNYIIMLIGIVFITVGFIFMSGGGSDDPNVFNEEIYNWQRIRLAPTLVIIGLAI 69
Query: 63 MVFAILKGDKK 73
++AIL KK
Sbjct: 70 EIYAILADPKK 80
>gi|153807126|ref|ZP_01959794.1| hypothetical protein BACCAC_01403 [Bacteroides caccae ATCC 43185]
gi|149130246|gb|EDM21456.1| hypothetical protein BACCAC_01403 [Bacteroides caccae ATCC 43185]
Length = 78
Score = 62.4 bits (150), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
+ FAF K NFI + V + ++I+GF LM+G S + + F P+IFS +RI +AP+V + GF+
Sbjct: 5 QKFAFDKVNFILLAVGMAIVIIGFLLMTGPSSSETV-FEPDIFSARRIKVAPVVCLFGFL 63
Query: 62 LMVFAILKGDKKTAE 76
M++A+L+ K E
Sbjct: 64 SMIYAVLRKPKTKIE 78
>gi|150003739|ref|YP_001298483.1| hypothetical protein BVU_1170 [Bacteroides vulgatus ATCC 8482]
gi|149932163|gb|ABR38861.1| putative membrane protein [Bacteroides vulgatus ATCC 8482]
Length = 81
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
+ FAF K+NFI + + + +IIVGF LM+G S +G F P+IFS +RI +AP V GFI
Sbjct: 4 QKFAFDKTNFILLAIGMAVIIVGFLLMTGPSSTEGY-FEPDIFSVRRIKVAPAVCFFGFI 62
Query: 62 LMVFAILKGDKKTAE 76
M++ I++ K E
Sbjct: 63 FMIYGIVRKPKDKTE 77
>gi|156109957|gb|EDO11702.1| hypothetical protein BACOVA_02912 [Bacteroides ovatus ATCC 8483]
Length = 80
Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
+ FAF K NFI + + + ++I+GF LM+G S + SF P+IFS +RI +AP+V + GF+
Sbjct: 5 QKFAFDKVNFILLAIGMAIVIIGFLLMTGPTSSE-TSFEPDIFSVRRIKVAPVVCLFGFL 63
Query: 62 LMVFAILKGDK 72
M++A+L+ K
Sbjct: 64 SMIYAVLRKPK 74
>gi|88801887|ref|ZP_01117415.1| hypothetical protein PI23P_04472 [Polaribacter irgensii 23-P]
gi|88782545|gb|EAR13722.1| hypothetical protein PI23P_04472 [Polaribacter irgensii 23-P]
Length = 80
Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 4 FAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILM 63
F FGK N+I++ + + I +GF M+GGGS + FN EI++ QRI +AP + ++GF +
Sbjct: 11 FIFGKRNYIFMTIGIVFIALGFIFMAGGGSDNPAVFNEEIYNWQRIRLAPTLVIIGFGIE 70
Query: 64 VFAILKGDKK 73
++AIL KK
Sbjct: 71 IYAILTSPKK 80
>gi|126662978|ref|ZP_01733976.1| hypothetical protein FBBAL38_06490 [Flavobacteria bacterium
BAL38]
gi|126624636|gb|EAZ95326.1| hypothetical protein FBBAL38_06490 [Flavobacteria bacterium
BAL38]
Length = 78
Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 48/71 (67%)
Query: 3 DFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFIL 62
+F F K N+ + V + +I GF LMSGGGS+D FN EIF+ +RI +AP V ++GF +
Sbjct: 8 EFLFDKVNYKILLVGLAVIATGFILMSGGGSEDPNVFNEEIFNFRRIRLAPTVVLIGFGI 67
Query: 63 MVFAILKGDKK 73
+++ILK KK
Sbjct: 68 TIYSILKNPKK 78
>gi|29348620|ref|NP_812123.1| hypothetical protein BT_3211 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29340525|gb|AAO78317.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 77
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
+ FAF K NFI + + + ++I+GF LM+G S + + F P+IFS +RI +AP+V + GFI
Sbjct: 5 QKFAFDKVNFILLAIGMAIVIIGFLLMTGPTSSETV-FEPDIFSVRRIKVAPVVCLFGFI 63
Query: 62 LMVFAILKGDK 72
M++A+L+ K
Sbjct: 64 SMIYAVLRKPK 74
>gi|149371951|ref|ZP_01891270.1| hypothetical protein SCB49_08678 [unidentified eubacterium SCB49]
gi|149355091|gb|EDM43652.1| hypothetical protein SCB49_08678 [unidentified eubacterium SCB49]
Length = 87
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 4 FAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILM 63
F F + N+ ++ + + I +GF LM+GGGS D FNPEI++ +RI +AP + ++GF +
Sbjct: 15 FVFQRKNYKFMLIGIAFITLGFILMAGGGSDDPNVFNPEIYNWRRIRLAPALILIGFGIE 74
Query: 64 VFAIL 68
V+AIL
Sbjct: 75 VYAIL 79
>gi|91217026|ref|ZP_01253989.1| hypothetical protein P700755_11215 [Psychroflexus torquis ATCC
700755]
gi|91184897|gb|EAS71277.1| hypothetical protein P700755_11215 [Psychroflexus torquis ATCC
700755]
Length = 87
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 6 FGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILMVF 65
F K N+ ++ + + +I VGF LM+GGGS D FNP+IFS +RI +AP V ++GF + V+
Sbjct: 18 FEKENYKFMIIGLAVIAVGFILMAGGGSDDPNVFNPDIFSWRRIRLAPTVILIGFAIEVY 77
Query: 66 AIL 68
AIL
Sbjct: 78 AIL 80
>gi|86143829|ref|ZP_01062205.1| hypothetical protein MED217_01010 [Flavobacterium sp. MED217]
gi|85829872|gb|EAQ48334.1| hypothetical protein MED217_01010 [Leeuwenhoekiella blandensis
MED217]
Length = 91
Score = 59.7 bits (143), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 45/65 (69%)
Query: 4 FAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILM 63
F F K N+ + + + +I +GF LMSGGGS D FNPEI++ +RI +AP + ++GF +
Sbjct: 17 FIFKKKNYKVMLIGLGVIALGFILMSGGGSDDPNVFNPEIYNWRRIRLAPALVLIGFGIE 76
Query: 64 VFAIL 68
V+AIL
Sbjct: 77 VYAIL 81
>gi|83856329|ref|ZP_00949858.1| hypothetical protein CA2559_04540 [Croceibacter atlanticus
HTCC2559]
gi|83850129|gb|EAP87997.1| hypothetical protein CA2559_04540 [Croceibacter atlanticus
HTCC2559]
Length = 86
Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 45/65 (69%)
Query: 4 FAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILM 63
F F K N+ + + + +I +GF LMSGGGS D FNPEI++ +RI +AP + ++GF +
Sbjct: 14 FIFTKKNYQVMAIGLGVIALGFILMSGGGSDDPDVFNPEIYNFRRIRLAPFLVLLGFGIE 73
Query: 64 VFAIL 68
V+AIL
Sbjct: 74 VYAIL 78
>gi|120437361|ref|YP_863047.1| conserved hypothetical protein, membrane [Gramella forsetii
KT0803]
gi|117579511|emb|CAL67980.1| conserved hypothetical protein, membrane [Gramella forsetii
KT0803]
Length = 87
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 4 FAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILM 63
F FGK N+ ++ + + +I +GF LMSGGGS+D FN I++ QRI +AP + ++GF +
Sbjct: 17 FVFGKKNYTFMFIGMGVIALGFILMSGGGSEDPNEFNDAIYNFQRIRLAPALVLIGFAIE 76
Query: 64 VFAIL 68
V+AIL
Sbjct: 77 VYAIL 81
>gi|150026389|ref|YP_001297215.1| hypothetical protein FP2359 [Flavobacterium psychrophilum
JIP02/86]
gi|149772930|emb|CAL44414.1| Protein of unknown function [Flavobacterium psychrophilum
JIP02/86]
Length = 79
Score = 56.2 bits (134), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 4 FAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILM 63
F F K N+ + + + +I VGF LMSGGGS + FN EIFS +RI +AP + ++GF +
Sbjct: 8 FLFEKVNYTILLIGIAIIAVGFILMSGGGSDNPAVFNKEIFSFRRIRLAPTMVLIGFGIT 67
Query: 64 VFAILKGDKK 73
+++ILK KK
Sbjct: 68 IYSILKNPKK 77
>gi|60679663|ref|YP_209807.1| hypothetical protein BF0067 [Bacteroides fragilis NCTC 9343]
gi|60491097|emb|CAH05845.1| putative membrane protein [Bacteroides fragilis NCTC 9343]
Length = 77
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 2 KDFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFI 61
+ FAF K+NFI + + + ++I+GF LM+G S + + F +IFS +RI +AP+V +GFI
Sbjct: 5 QKFAFDKTNFILLAIGMAVVILGFILMTGPSSSETV-FQADIFSVRRIKVAPVVCFLGFI 63
Query: 62 LMVFAILKGDK 72
M++ +++ K
Sbjct: 64 FMIYGVMRKPK 74
>gi|88713989|ref|ZP_01108068.1| hypothetical protein FB2170_07689 [Flavobacteriales bacterium
HTCC2170]
gi|88707640|gb|EAQ99881.1| hypothetical protein FB2170_07689 [Flavobacteriales bacterium
HTCC2170]
Length = 89
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 3 DFAFGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFIL 62
+F F K N++++ + + I +GF LMSGGGS D FN +I++ +RI +AP + ++G +
Sbjct: 16 EFIFQKKNYMFMFIGIAFIALGFILMSGGGSDDPNVFNDDIYNFRRIRLAPTLVLIGLGI 75
Query: 63 MVFAIL 68
V+AIL
Sbjct: 76 EVYAIL 81
>gi|153806258|ref|ZP_01958926.1| hypothetical protein BACCAC_00513 [Bacteroides caccae ATCC 43185]
gi|149130935|gb|EDM22141.1| hypothetical protein BACCAC_00513 [Bacteroides caccae ATCC 43185]
Length = 82
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 6 FGKSNFIWVGVSVFLIIVGFALMSGGGSKDGISFNPEIFSKQRIVIAPIVTMVGFILMVF 65
F + N+I + + +IIVG+ MSG GS ++NP+IFS RI +AP+V + G+++ +F
Sbjct: 15 FSRRNYIILLIGSVVIIVGYLFMSGEGSTPA-AYNPDIFSGLRIKVAPVVCLTGYLINIF 73
Query: 66 AIL 68
IL
Sbjct: 74 GIL 76
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.326 0.144 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,271,695
Number of Sequences: 5470121
Number of extensions: 10024391
Number of successful extensions: 33559
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 33532
Number of HSP's gapped (non-prelim): 26
length of query: 84
length of database: 1,894,087,724
effective HSP length: 55
effective length of query: 29
effective length of database: 1,593,231,069
effective search space: 46203701001
effective search space used: 46203701001
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)