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cd00355: Ribosomal_L30_like 
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Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
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Statistics
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PSSM-Id: 100098
View PSSM: cd00355
Aligned: 173 rows
Created: 6-Mar-2002
Updated: 31-Jul-2008
Structure
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Feature Residues: 6-8,14-16,18,19,21-24,26-30,38-43,45,46,48-50. -Click on image for an interactive view with Cn3D
Feature 1: 23S rRNA binding site - archaea
Evidence:
  • Structure:1JJ2_V; Haloarcula marismortui 50S ribosomal protein L30 binds the 23S rRNA
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cd00355 is part of a hierarchy of related CD models.
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cd00355 is a member of the superfamily cl00203.
cd00355:Ribosomal_L30_likecd01657:Ribosomal_L7_archeal_eukcd01658:Ribosomal_L301JJ2 V110668720126178535147919312525502671167549955254987420089963132875917721043914731484777338448968618978175609405031227271608260111971915316152790811857552417029118312646593741615101159041624118431008156938062183124591463028971113435439147281592062117945777123504628170054237676233617305701867037485042683741767611547758915220825675949213216929229841077609409767083987131248091330212ZKR w575306261692491221479056584727139815293877156371332195700541565392781523128811679346616800091728932721674746321455015301234482301594696441603311871330181646626111330167239100614555065615086540914924544917106034519896850305039505482831907599089267117164657075183760051698599358615835115387231018423714168039853159485274628592637106888507304206647275815636057616751558811674900812669765815039214215831956116093218315449890211792417311662418445644714949682721394388684252435916378335276742691637844531087585341SM1 X1BXY A622599514826092116125515134705691147788061624562281970494716087225615896365183113695284059211730212GYA X156760873024843610880495616773007276742811832213301545078464176651173023284935041564002842526297309181838359125816381219516762948514865531976742791145678233999793114826315714562024151244995858581651185791371885848541693356471609476822309759216244697517185394012451442538233137293481183454152316775240491216892149279646110639517124003679160902238518941921693508131187271772346614818360196228377850216749801499221941JJ2 V110668720126178535147919312525502671167549955254987420089963132875917721043914731484777338448968618978175609405031227271608260111971915316152790811857552417029118312646593741615101159041624118431008156938062183124591463028971113435439147281592062117945777123504628170054237676233617305701867037485042683741767611547758915220825675949213216929229841077609409767083987131248091330212ZKR w575306261692491221479056584727139815293877156371332195700541565392781523128811679346616800091728932721674746321455015301234482301594696441603311871330181646626111330167239100614555065615086540914924544917106034519896850305039505482831907599089267117164657075183760051698599358615835115387231018423714168039853159485274628592637106888507304206647275815636057616751558811674900812669765815039214215831956116093218315449890211792417311662418445644714949682721394388684252435916378335276742691637844531087585341SM1 X1BXY A622599514826092116125515134705691147788061624562281970494716087225615896365183113695284059211730212GYA X15676087302484361088049561677300727674281183221330154507846417665117302328493504156400284252629730918183835912581638121951676294851486553197674279114567823399979311482631571456202415124499585858165118579137188584854169335647160947682230975921624469751718539401245144253823313729348118345415231677524049121689214927964611063951712400367916090223851894192169350813118727177234661481836019622837785021674980149922194
cd00355 Sequence Cluster
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cd00355 Sequence Cluster
Sub-family Hierarchy
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CD Hierarchy
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection: 
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
Feature 1            ###        ### ## #### #####       ###### ## ###    
1JJ2_V         3 ALVQLRGEvn---mHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFG 55
gi 730570    143 FIVRVRGPlav-niPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIG 197
gi 50426837   96 FIIRIPDHtkglkvPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAG 151
gi 67623361   94 LVVRNSRFc----gSLESNRKLRDLGLVNKFSAVILSHTDETIRVLREVKPYVFYG 145
gi 145550656 228 LVVRIRGVkd---iSNRQQKILKELRLNKVNTAVFVRTSVDIWRKLKLVENYITYG 280
gi 161527908   6 LVVRIKGQad---cPYWASTTMDLLKLERKYRAVILPAKDNLLGMLKKVQHYVAWV 58
gi 170054237  88 LVFRHRGKyi---aNKEVMHILTKLGLPYKRRAVFLKLTEQVHAMLKMVEPWVIWG 140
gi 186703748  96 FVVRVKGPhav-niPQRVFKVLQILRLEQVNTGVFFRLNPTTFQLLKIIAPYIVVG 150
gi 123504628  83 LVVRVTPKke--ylCKEVRTILTEYRLNDQFDGVFVALTQENRQKLKSIAHTIVYG 136
gi 417676     34 LIVRTPGPvga-kiPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIX 88

Citing CDD
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35: D237-40
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Click on image for an interactive view with Cn3D
Feature Residues: 6-8,14-16,18,19,21-24,26-30,38-43,45,46,48-50. -Click on image for an interactive view with Cn3D