BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMT0652
(131 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148994098|ref|ZP_01823438.1| glucose-inhibited division ... 220 2e-56
gi|149019283|ref|ZP_01834645.1| glucose-inhibited division ... 220 2e-56
gi|149007045|ref|ZP_01830714.1| signal recognition particle... 220 2e-56
gi|149012344|ref|ZP_01833413.1| glucose-inhibited division ... 220 2e-56
gi|148985187|ref|ZP_01818426.1| glucose-inhibited division ... 220 2e-56
gi|15901147|ref|NP_345751.1| signal recognition particle pr... 220 2e-56
gi|15903209|ref|NP_358759.1| Signal recognition particle (F... 220 2e-56
gi|81096284|ref|ZP_00874631.1| Signal recognition particle ... 194 2e-48
gi|22537142|ref|NP_687993.1| signal recognition particle pr... 185 8e-46
gi|77409211|ref|ZP_00785921.1| signal recognition particle ... 184 1e-45
gi|125717990|ref|YP_001035123.1| SRP54, signal recognition ... 180 2e-44
gi|157075002|gb|ABV09685.1| signal recognition particle pro... 179 5e-44
gi|146318530|ref|YP_001198242.1| Signal recognition particl... 178 8e-44
gi|21910377|ref|NP_664645.1| putative signal recognition pa... 176 3e-43
gi|28895953|ref|NP_802303.1| putative signal recognition pa... 176 3e-43
gi|71910728|ref|YP_282278.1| signal recognition particle, s... 176 3e-43
gi|139473726|ref|YP_001128442.1| signal recognition particl... 176 3e-43
gi|94990538|ref|YP_598638.1| signal recognition particle su... 176 4e-43
gi|71903552|ref|YP_280355.1| signal recognition particle, s... 176 5e-43
gi|94988647|ref|YP_596748.1| signal recognition particle su... 174 1e-42
gi|94994460|ref|YP_602558.1| signal recognition particle su... 173 2e-42
gi|56807691|ref|ZP_00365570.1| COG0541: Signal recognition ... 169 3e-41
gi|15675165|ref|NP_269339.1| putative signal recognition pa... 169 5e-41
gi|24379497|ref|NP_721452.1| signal recognition particle pr... 165 8e-40
gi|19746132|ref|NP_607268.1| putative signal recognition pa... 160 3e-38
gi|50914250|ref|YP_060222.1| signal recognition particle su... 159 3e-38
gi|55820929|ref|YP_139371.1| signal recognition particle [S... 149 7e-35
gi|1850607|gb|AAB48050.1|AAB48050 Ffh [Streptococcus mutans] 147 1e-34
gi|77415126|ref|ZP_00791161.1| signal recognition particle ... 131 1e-29
gi|77410007|ref|ZP_00786578.1| signal recognition particle ... 130 3e-29
gi|56968646|gb|AAW32279.1| Ffh [Streptococcus mutans] 128 1e-28
gi|116512427|ref|YP_809643.1| Signal recognition particle G... 121 1e-26
gi|125623722|ref|YP_001032205.1| signal recognition particl... 121 1e-26
gi|15673598|ref|NP_267772.1| signal recognition particle pr... 120 3e-26
gi|69248474|ref|ZP_00604748.1| Signal recognition particle ... 62 8e-09
gi|29376252|ref|NP_815406.1| signal recognition particle pr... 60 4e-08
gi|42519388|ref|NP_965318.1| signal recognition particle pr... 59 7e-08
gi|116629442|ref|YP_814614.1| Signal recognition particle G... 58 2e-07
gi|104774249|ref|YP_619229.1| Signal recognition particle p... 57 3e-07
gi|116492613|ref|YP_804348.1| Signal recognition particle G... 56 6e-07
gi|116495084|ref|YP_806818.1| Signal recognition particle G... 56 7e-07
gi|81428329|ref|YP_395329.1| Signal recognition particle pr... 55 2e-06
gi|148544379|ref|YP_001271749.1| signal recognition particl... 54 3e-06
gi|58337566|ref|YP_194151.1| signal recognition protein Ffh... 53 5e-06
>gi|148994098|ref|ZP_01823438.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP9-BS68]
gi|147927451|gb|EDK78480.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP9-BS68]
Length = 523
Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA
Sbjct: 453 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 512
Query: 121 N 121
N
Sbjct: 513 N 513
>gi|149019283|ref|ZP_01834645.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP23-BS72]
gi|147931153|gb|EDK82132.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP23-BS72]
Length = 523
Score = 220 bits (560), Expect = 2e-56, Method: Composition-based stats.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA
Sbjct: 453 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 512
Query: 121 N 121
N
Sbjct: 513 N 513
>gi|149007045|ref|ZP_01830714.1| signal recognition particle protein [Streptococcus pneumoniae
SP18-BS74]
gi|147761349|gb|EDK68315.1| signal recognition particle protein [Streptococcus pneumoniae
SP18-BS74]
Length = 523
Score = 220 bits (560), Expect = 2e-56, Method: Composition-based stats.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA
Sbjct: 453 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 512
Query: 121 N 121
N
Sbjct: 513 N 513
>gi|149012344|ref|ZP_01833413.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP19-BS75]
gi|147763670|gb|EDK70605.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP19-BS75]
Length = 523
Score = 220 bits (560), Expect = 2e-56, Method: Composition-based stats.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA
Sbjct: 453 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 512
Query: 121 N 121
N
Sbjct: 513 N 513
>gi|148985187|ref|ZP_01818426.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP3-BS71]
gi|147922632|gb|EDK73750.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP3-BS71]
Length = 523
Score = 220 bits (560), Expect = 2e-56, Method: Composition-based stats.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA
Sbjct: 453 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 512
Query: 121 N 121
N
Sbjct: 513 N 513
>gi|15901147|ref|NP_345751.1| signal recognition particle protein [Streptococcus pneumoniae
TIGR4]
gi|111658514|ref|ZP_01409180.1| hypothetical protein SpneT_02000341 [Streptococcus pneumoniae
TIGR4]
gi|148989312|ref|ZP_01820692.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP6-BS73]
gi|148998927|ref|ZP_01826362.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP11-BS70]
gi|149002661|ref|ZP_01827593.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP14-BS69]
gi|14972772|gb|AAK75391.1| signal recognition particle protein [Streptococcus pneumoniae
TIGR4]
gi|147755237|gb|EDK62289.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP11-BS70]
gi|147759272|gb|EDK66265.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP14-BS69]
gi|147925290|gb|EDK76369.1| glucose-inhibited division protein B [Streptococcus pneumoniae
SP6-BS73]
Length = 523
Score = 220 bits (560), Expect = 2e-56, Method: Composition-based stats.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA
Sbjct: 453 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 512
Query: 121 N 121
N
Sbjct: 513 N 513
>gi|15903209|ref|NP_358759.1| Signal recognition particle (Fifty four homolog) [Streptococcus
pneumoniae R6]
gi|116515651|ref|YP_816611.1| signal recognition particle protein [Streptococcus pneumoniae D39]
gi|15458797|gb|AAK99969.1| Signal recognition particle (Fifty four homolog) [Streptococcus
pneumoniae R6]
gi|116076227|gb|ABJ53947.1| signal recognition particle protein [Streptococcus pneumoniae D39]
Length = 523
Score = 220 bits (560), Expect = 2e-56, Method: Composition-based stats.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA
Sbjct: 453 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 512
Query: 121 N 121
N
Sbjct: 513 N 513
>gi|81096284|ref|ZP_00874631.1| Signal recognition particle protein [Streptococcus suis 89/1591]
gi|80977628|gb|EAP41164.1| Signal recognition particle protein [Streptococcus suis 89/1591]
Length = 524
Score = 194 bits (492), Expect = 2e-48, Method: Composition-based stats.
Identities = 107/122 (87%), Positives = 112/122 (91%), Gaps = 1/122 (0%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LL PSRRRRIA GSGN+FVEVNKFIKDFNQAK +MQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLTPSRRRRIANGSGNSFVEVNKFIKDFNQAKTMMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSAL-GGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRM 119
MPNM GMDMSALE MMG GMPD+S L GGAGMPDMSQMFGGGLKG+IGEFAMKQ+MKR
Sbjct: 453 MPNMNGMDMSALEDMMGGAGMPDMSQLMGGAGMPDMSQMFGGGLKGRIGEFAMKQAMKRQ 512
Query: 120 AN 121
AN
Sbjct: 513 AN 514
>gi|22537142|ref|NP_687993.1| signal recognition particle protein Ffh [Streptococcus agalactiae
2603V/R]
gi|25011071|ref|NP_735466.1| hypothetical protein gbs1017 [Streptococcus agalactiae NEM316]
gi|76787075|ref|YP_329698.1| signal recognition particle protein [Streptococcus agalactiae A909]
gi|76797794|ref|ZP_00780060.1| signal recognition particle protein [Streptococcus agalactiae
18RS21]
gi|77405715|ref|ZP_00782802.1| signal recognition particle protein [Streptococcus agalactiae H36B]
gi|77412008|ref|ZP_00788337.1| signal recognition particle protein [Streptococcus agalactiae
CJB111]
gi|77413611|ref|ZP_00789797.1| signal recognition particle protein [Streptococcus agalactiae 515]
gi|22534004|gb|AAM99865.1|AE014236_19 signal recognition particle protein Ffh [Streptococcus agalactiae
2603V/R]
gi|23095470|emb|CAD46676.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562132|gb|ABA44716.1| signal recognition particle protein [Streptococcus agalactiae A909]
gi|76586870|gb|EAO63362.1| signal recognition particle protein [Streptococcus agalactiae
18RS21]
gi|77160320|gb|EAO71445.1| signal recognition particle protein [Streptococcus agalactiae 515]
gi|77161964|gb|EAO72946.1| signal recognition particle protein [Streptococcus agalactiae
CJB111]
gi|77175711|gb|EAO78493.1| signal recognition particle protein [Streptococcus agalactiae H36B]
Length = 521
Score = 185 bits (469), Expect = 8e-46, Method: Composition-based stats.
Identities = 103/121 (85%), Positives = 110/121 (90%), Gaps = 2/121 (1%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFV+VNKFIKDFNQAKQ+MQGVMSGDMNKMMK+MGI+PNNLPK+
Sbjct: 393 LLNPSRRRRIAAGSGNTFVDVNKFIKDFNQAKQMMQGVMSGDMNKMMKKMGIDPNNLPKD 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP M GMDMS LEGMMGQ GMPDLS+LGG D SQMFGGGLKGK+G FA KQSMKRMA
Sbjct: 453 MPGMDGMDMSNLEGMMGQNGMPDLSSLGGD--MDFSQMFGGGLKGKVGAFAAKQSMKRMA 510
Query: 121 N 121
N
Sbjct: 511 N 511
>gi|77409211|ref|ZP_00785921.1| signal recognition particle protein [Streptococcus agalactiae COH1]
gi|77172187|gb|EAO75346.1| signal recognition particle protein [Streptococcus agalactiae COH1]
Length = 521
Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats.
Identities = 103/121 (85%), Positives = 110/121 (90%), Gaps = 2/121 (1%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFV+VNKFIKDFNQAKQ+MQGVMSGDMNKMMK+MGI+PNNLPK+
Sbjct: 393 LLNPSRRRRIAAGSGNTFVDVNKFIKDFNQAKQMMQGVMSGDMNKMMKKMGIDPNNLPKD 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP M GMDMS LEGMMGQ GMPDLS+LGG D SQMFGGGLKGK+G FA KQSMKRMA
Sbjct: 453 MPGMDGMDMSNLEGMMGQNGMPDLSSLGGD--MDFSQMFGGGLKGKVGAFAAKQSMKRMA 510
Query: 121 N 121
N
Sbjct: 511 N 511
>gi|125717990|ref|YP_001035123.1| SRP54, signal recognition particle GTPase protein, putative
[Streptococcus sanguinis SK36]
gi|125497907|gb|ABN44573.1| SRP54, signal recognition particle GTPase protein, putative
[Streptococcus sanguinis SK36]
Length = 524
Score = 180 bits (456), Expect = 2e-44, Method: Composition-based stats.
Identities = 97/117 (82%), Positives = 110/117 (94%), Gaps = 1/117 (0%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LL+PSRRRRIA GSGN+FV+VNKFIKDFNQAKQ+MQGV+SGDM+KMMKQMG+NPNN+PKN
Sbjct: 393 LLSPSRRRRIANGSGNSFVDVNKFIKDFNQAKQMMQGVLSGDMSKMMKQMGLNPNNMPKN 452
Query: 61 MPNMGGM-DMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSM 116
MP GGM DMSALEGMMGQGG+PD+S LGG+GMPDMSQMFGGGLKGK GEF M++SM
Sbjct: 453 MPGGGGMPDMSALEGMMGQGGIPDMSGLGGSGMPDMSQMFGGGLKGKAGEFLMRRSM 509
>gi|157075002|gb|ABV09685.1| signal recognition particle protein [Streptococcus gordonii str.
Challis substr. CH1]
Length = 524
Score = 179 bits (453), Expect = 5e-44, Method: Composition-based stats.
Identities = 97/117 (82%), Positives = 108/117 (92%), Gaps = 1/117 (0%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LL PSRRRRIA GSGN+FV+VNKFIKDFNQ+KQLMQGV+SGDM+KMMKQMG+NPNN+PKN
Sbjct: 393 LLTPSRRRRIANGSGNSFVDVNKFIKDFNQSKQLMQGVLSGDMSKMMKQMGLNPNNMPKN 452
Query: 61 MPNMGGM-DMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSM 116
MP G M DMSAL+ MMGQGGMPD+SALGGAGMPDMSQMFGGGLKGK GEF M++SM
Sbjct: 453 MPGGGAMPDMSALQDMMGQGGMPDMSALGGAGMPDMSQMFGGGLKGKAGEFLMRRSM 509
>gi|146318530|ref|YP_001198242.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
gi|146320726|ref|YP_001200437.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
gi|145689336|gb|ABP89842.1| Signal recognition particle GTPase [Streptococcus suis 05ZYH33]
gi|145691532|gb|ABP92037.1| Signal recognition particle GTPase [Streptococcus suis 98HAH33]
Length = 512
Score = 178 bits (452), Expect = 8e-44, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 104/121 (85%), Gaps = 11/121 (9%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LL PSRRRRIA GSGN+FVEVNKFIKDFNQAK +MQGVMSGDMNKMMKQMGINPNNLPKN
Sbjct: 393 LLTPSRRRRIANGSGNSFVEVNKFIKDFNQAKTMMQGVMSGDMNKMMKQMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP+M GMDMSALE MM GGAGMPDMSQMFGGGLKGKIGEFAMKQ+MKR A
Sbjct: 453 MPDMNGMDMSALEDMM-----------GGAGMPDMSQMFGGGLKGKIGEFAMKQAMKRQA 501
Query: 121 N 121
N
Sbjct: 502 N 502
>gi|21910377|ref|NP_664645.1| putative signal recognition particle -inhibited division protein
[Streptococcus pyogenes MGAS315]
gi|21904574|gb|AAM79448.1| putative signal recognition particle -inhibited division protein
[Streptococcus pyogenes MGAS315]
Length = 520
Score = 176 bits (447), Expect = 3e-43, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 453 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 509
Query: 121 N 121
N
Sbjct: 510 N 510
>gi|28895953|ref|NP_802303.1| putative signal recognition particle [Streptococcus pyogenes SSI-1]
gi|28811203|dbj|BAC64136.1| putative signal recognition particle [Streptococcus pyogenes SSI-1]
Length = 522
Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 395 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 454
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 455 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 511
Query: 121 N 121
N
Sbjct: 512 N 512
>gi|71910728|ref|YP_282278.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
pyogenes MGAS5005]
gi|71853510|gb|AAZ51533.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
pyogenes MGAS5005]
Length = 520
Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 453 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 509
Query: 121 N 121
N
Sbjct: 510 N 510
>gi|139473726|ref|YP_001128442.1| signal recognition particle protein [Streptococcus pyogenes str.
Manfredo]
gi|134271973|emb|CAM30211.1| signal recognition particle protein [Streptococcus pyogenes str.
Manfredo]
Length = 520
Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 453 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 509
Query: 121 N 121
N
Sbjct: 510 N 510
>gi|94990538|ref|YP_598638.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
pyogenes MGAS10270]
gi|94544046|gb|ABF34094.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
pyogenes MGAS10270]
Length = 522
Score = 176 bits (446), Expect = 4e-43, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 395 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 454
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 455 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 511
Query: 121 N 121
N
Sbjct: 512 N 512
>gi|71903552|ref|YP_280355.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
pyogenes MGAS6180]
gi|71802647|gb|AAX72000.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
pyogenes MGAS6180]
Length = 522
Score = 176 bits (445), Expect = 5e-43, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 395 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 454
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 455 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQVFGKGFKGKIGQFAMKQAMKRQA 511
Query: 121 N 121
N
Sbjct: 512 N 512
>gi|94988647|ref|YP_596748.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
pyogenes MGAS9429]
gi|94992471|ref|YP_600570.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
pyogenes MGAS2096]
gi|94542155|gb|ABF32204.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
pyogenes MGAS9429]
gi|94545979|gb|ABF36026.1| signal recognition particle, subunit FFH/SRP54 [Streptococcus
pyogenes MGAS2096]
Length = 522
Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats.
Identities = 99/121 (81%), Positives = 106/121 (87%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPK
Sbjct: 395 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKT 454
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 455 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 511
Query: 121 N 121
N
Sbjct: 512 N 512
>gi|94994460|ref|YP_602558.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
pyogenes MGAS10750]
gi|94547968|gb|ABF38014.1| signal recognition particle subunit FFH/SRP54 [Streptococcus
pyogenes MGAS10750]
Length = 522
Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats.
Identities = 99/121 (81%), Positives = 105/121 (86%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM KMMK MGINPNNLPKN
Sbjct: 395 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMAKMMKDMGINPNNLPKN 454
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS L G DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 455 MP-AGMPDMSSLEGMMGQGGMPDLSGLNGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 511
Query: 121 N 121
N
Sbjct: 512 N 512
>gi|56807691|ref|ZP_00365570.1| COG0541: Signal recognition particle GTPase [Streptococcus pyogenes
M49 591]
Length = 386
Score = 169 bits (429), Expect = 3e-41, Method: Composition-based stats.
Identities = 100/121 (82%), Positives = 107/121 (88%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 259 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 318
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 319 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 375
Query: 121 N 121
N
Sbjct: 376 N 376
>gi|15675165|ref|NP_269339.1| putative signal recognition particle [Streptococcus pyogenes M1
GAS]
gi|13622328|gb|AAK34060.1| putative signal recognition particle [Streptococcus pyogenes M1
GAS]
Length = 519
Score = 169 bits (427), Expect = 5e-41, Method: Composition-based stats.
Identities = 98/121 (80%), Positives = 106/121 (87%), Gaps = 4/121 (3%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FV+ NKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNSFVD-NKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 451
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS LGG DMSQ+FG G KGKIG+FAMKQ+MKR A
Sbjct: 452 MP-AGMPDMSSLEGMMGQGGMPDLSGLGGD--MDMSQLFGKGFKGKIGQFAMKQAMKRQA 508
Query: 121 N 121
N
Sbjct: 509 N 509
>gi|24379497|ref|NP_721452.1| signal recognition particle protein subunit, Ffh [Streptococcus
mutans UA159]
gi|26007034|sp|Q54431|SRP54_STRMU Signal recognition particle protein (Fifty-four homolog)
gi|24377436|gb|AAN58758.1|AE014944_8 signal recognition particle protein subunit, Ffh [Streptococcus
mutans UA159]
Length = 516
Score = 165 bits (417), Expect = 8e-40, Method: Composition-based stats.
Identities = 93/115 (80%), Positives = 101/115 (87%), Gaps = 7/115 (6%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LL PSRRRRIA+GSGNTFV VNKFIKDFNQAK++MQGVMSGDMNK+MKQMGINPNN+PKN
Sbjct: 393 LLTPSRRRRIASGSGNTFVNVNKFIKDFNQAKKMMQGVMSGDMNKVMKQMGINPNNMPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQS 115
MD SALEGMMGQGGMPD+S L G M D+SQMFGGGLKGK+GEFAMKQS
Sbjct: 453 ------MDSSALEGMMGQGGMPDMSELSGTNM-DVSQMFGGGLKGKVGEFAMKQS 500
>gi|19746132|ref|NP_607268.1| putative signal recognition particle -inhibited division protein
[Streptococcus pyogenes MGAS8232]
gi|19748308|gb|AAL97767.1| putative signal recognition particle -inhibited division protein
[Streptococcus pyogenes MGAS8232]
Length = 520
Score = 160 bits (404), Expect = 3e-38, Method: Composition-based stats.
Identities = 101/121 (83%), Positives = 109/121 (90%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 393 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 452
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS+LGG DMSQ+FGGG KGKIG+FAMKQ+MKR A
Sbjct: 453 MP-AGMPDMSSLEGMMGQGGMPDLSSLGGD--MDMSQLFGGGFKGKIGQFAMKQAMKRQA 509
Query: 121 N 121
N
Sbjct: 510 N 510
>gi|50914250|ref|YP_060222.1| signal recognition particle subunit FFH [Streptococcus pyogenes
MGAS10394]
gi|50903324|gb|AAT87039.1| signal recognition particle subunit FFH [Streptococcus pyogenes
MGAS10394]
Length = 522
Score = 159 bits (403), Expect = 3e-38, Method: Composition-based stats.
Identities = 101/121 (83%), Positives = 109/121 (90%), Gaps = 3/121 (2%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+FVEVNKFIKDFNQAK +MQGVMSGDM+KMMK MGINPNNLPKN
Sbjct: 395 LLNPSRRRRIAAGSGNSFVEVNKFIKDFNQAKSMMQGVMSGDMSKMMKDMGINPNNLPKN 454
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMKRMA 120
MP G DMS+LEGMMGQGGMPDLS+LGG DMSQ+FGGG KGKIG+FAMKQ+MKR A
Sbjct: 455 MP-AGMPDMSSLEGMMGQGGMPDLSSLGGD--MDMSQLFGGGFKGKIGQFAMKQAMKRQA 511
Query: 121 N 121
N
Sbjct: 512 N 512
>gi|55820929|ref|YP_139371.1| signal recognition particle [Streptococcus thermophilus LMG 18311]
gi|55822851|ref|YP_141292.1| signal recognition particle [Streptococcus thermophilus CNRZ1066]
gi|116627717|ref|YP_820336.1| Signal recognition particle GTPase [Streptococcus thermophilus
LMD-9]
gi|55736914|gb|AAV60556.1| signal recognition particle [Streptococcus thermophilus LMG 18311]
gi|55738836|gb|AAV62477.1| signal recognition particle [Streptococcus thermophilus CNRZ1066]
gi|116100994|gb|ABJ66140.1| Signal recognition particle GTPase [Streptococcus thermophilus
LMD-9]
Length = 520
Score = 149 bits (375), Expect = 7e-35, Method: Composition-based stats.
Identities = 95/124 (76%), Positives = 103/124 (83%), Gaps = 9/124 (7%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LL PSRRRRIA GSGNTF+EVNKFIKDFNQAKQ+MQG+MSGDM +MM+QMG+NPNNLPKN
Sbjct: 393 LLTPSRRRRIANGSGNTFIEVNKFIKDFNQAKQMMQGIMSGDMEQMMRQMGLNPNNLPKN 452
Query: 61 MPN---MGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMK 117
MPN MG MDMSALEGMMG GMPDL G D+SQM GGGLKGKIG FAMK +MK
Sbjct: 453 MPNMPDMGNMDMSALEGMMGGTGMPDL------GNMDLSQMLGGGLKGKIGSFAMKHAMK 506
Query: 118 RMAN 121
R AN
Sbjct: 507 RQAN 510
>gi|1850607|gb|AAB48050.1|AAB48050 Ffh [Streptococcus mutans]
Length = 516
Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats.
Identities = 88/115 (76%), Positives = 95/115 (82%), Gaps = 7/115 (6%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LL PSRRRRIA+GSGNTFV VNKFIKDFNQAK++MQGVMSGDMNK+MKQMGIN
Sbjct: 393 LLTPSRRRRIASGSGNTFVNVNKFIKDFNQAKKMMQGVMSGDMNKVMKQMGIN------P 446
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQS 115
MD SALEGMMGQGGMPD+S L GA M D+SQMFGGGLKGK+GEFAMKQS
Sbjct: 447 NNMPNNMDSSALEGMMGQGGMPDMSGLSGANM-DVSQMFGGGLKGKVGEFAMKQS 500
>gi|77415126|ref|ZP_00791161.1| signal recognition particle protein Ffh [Streptococcus agalactiae
515]
gi|77158822|gb|EAO70098.1| signal recognition particle protein Ffh [Streptococcus agalactiae
515]
Length = 198
Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats.
Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 2/101 (1%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFV+VNKFIKDFNQAKQ+MQGVMSGDMNKMMK+MGI+PNNLPK+
Sbjct: 98 LLNPSRRRRIAAGSGNTFVDVNKFIKDFNQAKQMMQGVMSGDMNKMMKKMGIDPNNLPKD 157
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGG 101
MP M GMDMS LEGMMG GMPDLS+LGG D S M GG
Sbjct: 158 MPGMDGMDMSNLEGMMGANGMPDLSSLGGD--MDFSPMVGG 196
>gi|77410007|ref|ZP_00786578.1| signal recognition particle protein Ffh [Streptococcus agalactiae
COH1]
gi|77171384|gb|EAO74682.1| signal recognition particle protein Ffh [Streptococcus agalactiae
COH1]
Length = 215
Score = 130 bits (326), Expect = 3e-29, Method: Composition-based stats.
Identities = 78/89 (87%), Positives = 84/89 (94%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGNTFV+VNKFIKDFNQAKQ+MQGVMSGDMNKMMK+MGI+PNNLPK+
Sbjct: 103 LLNPSRRRRIAAGSGNTFVDVNKFIKDFNQAKQMMQGVMSGDMNKMMKKMGIDPNNLPKD 162
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGG 89
MP M GMDMS LEGMMGQ GMPDLS+L G
Sbjct: 163 MPGMDGMDMSNLEGMMGQNGMPDLSSLXG 191
>gi|56968646|gb|AAW32279.1| Ffh [Streptococcus mutans]
Length = 516
Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats.
Identities = 89/115 (77%), Positives = 94/115 (81%), Gaps = 7/115 (6%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LL PSRRRRIA+GSGNTFV VNKFIKDFNQAK++MQGVMSGDMNK+MKQMGIN
Sbjct: 393 LLTPSRRRRIASGSGNTFVNVNKFIKDFNQAKKMMQGVMSGDMNKVMKQMGIN------P 446
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQS 115
MD SALEGMMGQGGMPD+S L GA M DMSQMFGGGLKGK GEFAMKQS
Sbjct: 447 NNMPNNMDSSALEGMMGQGGMPDMSGLSGANM-DMSQMFGGGLKGKFGEFAMKQS 500
>gi|116512427|ref|YP_809643.1| Signal recognition particle GTPase [Lactococcus lactis subsp.
cremoris SK11]
gi|116108081|gb|ABJ73221.1| Signal recognition particle GTPase [Lactococcus lactis subsp.
cremoris SK11]
Length = 518
Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats.
Identities = 75/121 (61%), Positives = 88/121 (72%), Gaps = 12/121 (9%)
Query: 2 LNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKNM 61
L+P+RRRRIAAGSGN+F+EVNKFIK FNQ+K++MQG+M+GDMN MM++M NM
Sbjct: 394 LSPARRRRIAAGSGNSFIEVNKFIKQFNQSKEMMQGIMNGDMNAMMQKMMGGAGGQMPNM 453
Query: 62 PNMGGM-DMSA---LEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMK 117
P GM DMSA L+GMMG G GMPDMS MFGGGLKGK EFAMKQ+MK
Sbjct: 454 PTGSGMPDMSALGDLQGMMGNG--------SANGMPDMSSMFGGGLKGKATEFAMKQAMK 505
Query: 118 R 118
R
Sbjct: 506 R 506
>gi|125623722|ref|YP_001032205.1| signal recognition particle protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|124492530|emb|CAL97473.1| signal recognition particle protein [Lactococcus lactis subsp.
cremoris MG1363]
Length = 518
Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats.
Identities = 75/121 (61%), Positives = 88/121 (72%), Gaps = 12/121 (9%)
Query: 2 LNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKNM 61
L+P+RRRRIAAGSGN+F+EVNKFIK FNQ+K++MQG+M+GDMN MM++M NM
Sbjct: 394 LSPARRRRIAAGSGNSFIEVNKFIKQFNQSKEMMQGIMNGDMNAMMQKMMGGAGGQMPNM 453
Query: 62 PNMGGM-DMSA---LEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMK 117
P GM DMSA L+GMMG G GMPDMS MFGGGLKGK EFAMKQ+MK
Sbjct: 454 PTGSGMPDMSALGDLQGMMGNG--------SANGMPDMSSMFGGGLKGKATEFAMKQAMK 505
Query: 118 R 118
R
Sbjct: 506 R 506
>gi|15673598|ref|NP_267772.1| signal recognition particle protein [Lactococcus lactis subsp.
lactis Il1403]
gi|12724623|gb|AAK05714.1|AE006391_13 signal recognition particle protein Ffh [Lactococcus lactis subsp.
lactis Il1403]
Length = 518
Score = 120 bits (300), Expect = 3e-26, Method: Composition-based stats.
Identities = 74/121 (61%), Positives = 88/121 (72%), Gaps = 12/121 (9%)
Query: 2 LNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKNM 61
L+P+RRRRIAAGSGN+F+EVNKFIK FNQ+K++MQG+M+GDMN MM++M NM
Sbjct: 394 LSPARRRRIAAGSGNSFIEVNKFIKQFNQSKEMMQGIMNGDMNAMMQKMMGGAGGQMPNM 453
Query: 62 PNMGGM-DMSA---LEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQSMK 117
P GM DMS+ L+GMMG G GMPDMS MFGGGLKGK EFAMKQ+MK
Sbjct: 454 PAGSGMPDMSSLGDLQGMMGNG--------SANGMPDMSSMFGGGLKGKATEFAMKQAMK 505
Query: 118 R 118
R
Sbjct: 506 R 506
>gi|69248474|ref|ZP_00604748.1| Signal recognition particle protein [Enterococcus faecium DO]
gi|68194411|gb|EAN08916.1| Signal recognition particle protein [Enterococcus faecium DO]
Length = 472
Score = 62.4 bits (150), Expect = 8e-09, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 55/114 (48%), Gaps = 47/114 (41%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSGN+ VEVN+ IK F +++++MQ + GDMN
Sbjct: 393 LLNPSRRRRIAAGSGNSVVEVNRMIKQFKESRKMMQQMSKGDMN---------------- 436
Query: 61 MPNMGGMDMSALEGMMGQGGMPDLSALGGAGMPDMSQMFGGGLKGKIGEFAMKQ 114
+P M QMFG G+KGK+G+ AM +
Sbjct: 437 -------------------------------IPGMDQMFGSGVKGKLGKMAMNR 459
>gi|29376252|ref|NP_815406.1| signal recognition particle protein [Enterococcus faecalis V583]
gi|29343715|gb|AAO81476.1| signal recognition particle protein [Enterococcus faecalis V583]
Length = 472
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMN 44
LLNPSRRRRIAAGSGN+ VEVN+ IK F ++K++MQ + GDMN
Sbjct: 393 LLNPSRRRRIAAGSGNSVVEVNRMIKQFKESKKMMQQMSKGDMN 436
>gi|42519388|ref|NP_965318.1| signal recognition particle protein [Lactobacillus johnsonii NCC
533]
gi|41583676|gb|AAS09284.1| signal recognition particle protein [Lactobacillus johnsonii NCC
533]
Length = 476
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
+LNPSRRRRIAAGSG + EVN+ IK F Q+K++MQ + GDM ++ NLP
Sbjct: 392 ILNPSRRRRIAAGSGRSIAEVNRMIKQFKQSKEMMQKMTKGDMGELA--------NLPGM 443
Query: 61 MPNMGGMDMSAL 72
MG M M ++
Sbjct: 444 NSPMGKMAMRSM 455
>gi|116629442|ref|YP_814614.1| Signal recognition particle GTPase [Lactobacillus gasseri ATCC
33323]
gi|116095024|gb|ABJ60176.1| Signal recognition particle GTPase [Lactobacillus gasseri ATCC
33323]
Length = 476
Score = 58.2 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
+LNPSRRRRIAAGSG + EVN+ IK F Q+K++MQ + GDM + NLP
Sbjct: 392 ILNPSRRRRIAAGSGRSIAEVNRMIKQFKQSKEMMQKMTKGDMGEFA--------NLPGM 443
Query: 61 MPNMGGMDMSAL 72
MG M M ++
Sbjct: 444 NSPMGKMAMRSM 455
>gi|104774249|ref|YP_619229.1| Signal recognition particle protein Ffh [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116514339|ref|YP_813245.1| Signal recognition particle GTPase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|103423330|emb|CAI98173.1| Signal recognition particle protein Ffh [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116093654|gb|ABJ58807.1| Signal recognition particle GTPase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 476
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 39/65 (60%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGINPNNLPKN 60
LLNPSRRRRIAAGSG VEVN+ IK+F AK +M V G+ + K G+N
Sbjct: 393 LLNPSRRRRIAAGSGVPIVEVNRMIKEFKTAKDMMSKVTKGNFKDLEKLPGMNSPMAKMA 452
Query: 61 MPNMG 65
M MG
Sbjct: 453 MRRMG 457
>gi|116492613|ref|YP_804348.1| Signal recognition particle GTPase [Pediococcus pentosaceus ATCC
25745]
gi|116102763|gb|ABJ67906.1| Signal recognition particle GTPase [Pediococcus pentosaceus ATCC
25745]
Length = 476
Score = 56.2 bits (134), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 36/51 (70%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMG 51
LLNPSRRRRIAAGSG VEVN+ IK FNQ K++M + G+ N M +G
Sbjct: 393 LLNPSRRRRIAAGSGRPVVEVNRMIKQFNQMKKMMNQMSKGNFNGMEGMLG 443
>gi|116495084|ref|YP_806818.1| Signal recognition particle GTPase [Lactobacillus casei ATCC 334]
gi|116105234|gb|ABJ70376.1| Signal recognition particle GTPase [Lactobacillus casei ATCC 334]
Length = 478
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMG 51
LLNPSRRRR+AAGSG VEVN+ IK FNQ+KQ+M + G+M + MG
Sbjct: 393 LLNPSRRRRLAAGSGRPVVEVNRMIKQFNQSKQMMNQMSKGNMKGLDGLMG 443
>gi|81428329|ref|YP_395329.1| Signal recognition particle protein Ffh [Lactobacillus sakei subsp.
sakei 23K]
gi|78609971|emb|CAI55018.1| Signal recognition particle protein Ffh [Lactobacillus sakei subsp.
sakei 23K]
Length = 478
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMG 51
LLNPSRRRR+AAG+G VEVN+ IK FNQ+K++M + G+ N M MG
Sbjct: 393 LLNPSRRRRLAAGAGRPIVEVNRMIKQFNQSKKMMNQMSKGNFNGMEGLMG 443
>gi|148544379|ref|YP_001271749.1| signal recognition particle protein [Lactobacillus reuteri F275]
gi|148531413|gb|ABQ83412.1| signal recognition particle protein [Lactobacillus reuteri F275]
Length = 481
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMG 51
++NPSRRRR+AAG+G VEVN+ IK FNQ +++M+ V +G+ N M G
Sbjct: 393 IMNPSRRRRLAAGAGRPIVEVNRMIKQFNQMRKMMKQVTNGNFNGMQNMFG 443
>gi|58337566|ref|YP_194151.1| signal recognition protein Ffh [Lactobacillus acidophilus NCFM]
gi|58254883|gb|AAV43120.1| signal recognition protein Ffh [Lactobacillus acidophilus NCFM]
Length = 476
Score = 53.1 bits (126), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 1 LLNPSRRRRIAAGSGNTFVEVNKFIKDFNQAKQLMQGVMSGDMNKMMKQMGIN 53
+LNPSRRRRIAAGSG VEVN+ IK F Q +++M V G+M + G++
Sbjct: 393 ILNPSRRRRIAAGSGRPVVEVNRMIKQFKQMREMMSKVTKGNMKGLSNLPGMD 445
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.316 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,015,589
Number of Sequences: 5470121
Number of extensions: 19982851
Number of successful extensions: 70363
Number of sequences better than 1.0e-05: 127
Number of HSP's better than 0.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 69923
Number of HSP's gapped (non-prelim): 185
length of query: 131
length of database: 1,894,087,724
effective HSP length: 97
effective length of query: 34
effective length of database: 1,363,485,987
effective search space: 46358523558
effective search space used: 46358523558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)