BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SP_1056
(607 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15900926|ref|NP_345530.1| Tn5252, relaxase [Streptococcu... 1073 0.0
gi|148988513|ref|ZP_01819960.1| Tn5252, relaxase [Streptoco... 897 0.0
gi|25011380|ref|NP_735775.1| hypothetical protein gbs1338 [... 577 e-163
gi|146318567|ref|YP_001198279.1| Chromosome segregation ATP... 573 e-161
gi|146320766|ref|YP_001200477.1| Chromosome segregation ATP... 570 e-160
gi|81096315|ref|ZP_00874662.1| Relaxase/mobilization nuclea... 569 e-160
gi|113120161|gb|ABI30222.1| putative relaxase [Streptococcu... 560 e-158
gi|22537401|ref|NP_688252.1| Tn5252, relaxase [Streptococcu... 552 e-155
gi|149004222|ref|ZP_01829014.1| hypothetical protein CGSSp1... 552 e-155
gi|149013001|ref|ZP_01833890.1| hypothetical protein CGSSp1... 551 e-155
gi|149019653|ref|ZP_01834972.1| hypothetical protein CGSSp2... 548 e-154
gi|951051|gb|AAC98434.1| relaxase [Streptococcus pneumoniae] 523 e-146
gi|148985010|ref|ZP_01818253.1| hypothetical protein CGSSp3... 387 e-106
gi|81096447|ref|ZP_00874791.1| Relaxase/mobilization nuclea... 373 e-101
gi|148995448|ref|ZP_01824120.1| Tn5252, relaxase [Streptoco... 290 3e-76
gi|15903001|ref|NP_358551.1| Tn5252, relaxase, truncation [... 288 9e-76
gi|148995449|ref|ZP_01824121.1| hypothetical protein CGSSp9... 240 2e-61
gi|32481511|gb|AAP84039.1| relaxase [Streptococcus suis] 239 4e-61
gi|148985011|ref|ZP_01818254.1| hypothetical protein CGSSp3... 161 1e-37
gi|148998879|ref|ZP_01826315.1| hypothetical protein CGSSp1... 157 2e-36
gi|81096448|ref|ZP_00874792.1| similar to conjugative trans... 154 1e-35
gi|25011172|ref|NP_735567.1| hypothetical protein gbs1121 [... 149 4e-34
gi|20138595|sp|Q48722|LTRB_LACLC Group II intron-interrupte... 146 4e-33
gi|94990425|ref|YP_598525.1| Relaxase [Streptococcus pyogen... 145 9e-33
gi|20138594|sp|Q48665|LTRB_LACLM Group II intron-interrupte... 143 4e-32
gi|126566159|gb|AAP60026.2| LtrB [Shuttle vector pCOMT-Kan] 142 5e-32
gi|71910616|ref|YP_282166.1| protein involved in lantibioti... 142 6e-32
gi|58616103|ref|YP_195793.1| PcfG [Enterococcus faecalis] >... 141 1e-31
gi|29377923|ref|NP_817049.1| relaxase [Enterococcus faecali... 138 9e-31
gi|108736211|gb|ABG00340.1| MobD [Lactococcus lactis] 134 2e-29
gi|125624189|ref|YP_001032671.1| MobA [Lactococcus lactis s... 132 9e-29
gi|15675068|ref|NP_269242.1| protein involved in lantibioti... 129 6e-28
gi|15903003|ref|NP_358553.1| hypothetical protein spr0959 [... 114 2e-23
gi|116515758|ref|YP_816415.1| hypothetical protein SPD_0938... 114 3e-23
gi|15903002|ref|NP_358552.1| Tn5252, relaxase, truncation [... 108 1e-21
gi|148998877|ref|ZP_01826313.1| hypothetical protein CGSSp1... 103 3e-20
gi|154499000|ref|ZP_02037378.1| hypothetical protein BACCAP... 90 4e-16
gi|32455483|ref|NP_862609.1| relaxase Mob DEI [Lactococcus ... 86 9e-15
gi|94994345|ref|YP_602443.1| Relaxase [Streptococcus pyogen... 84 3e-14
gi|94988547|ref|YP_596648.1| relaxase [Streptococcus pyogen... 84 3e-14
gi|94990423|ref|YP_598523.1| Relaxase [Streptococcus pyogen... 84 4e-14
gi|154498513|ref|ZP_02036891.1| hypothetical protein BACCAP... 83 5e-14
gi|8100671|gb|AAF72355.1|AF192329_16 Rlx-like protein [Ente... 82 8e-14
gi|71903442|ref|YP_280245.1| relaxase [Streptococcus pyogen... 82 1e-13
gi|71903440|ref|YP_280243.1| relaxase [Streptococcus pyogen... 82 1e-13
gi|154500028|ref|ZP_02038066.1| hypothetical protein BACCAP... 82 1e-13
gi|154498715|ref|ZP_02037093.1| hypothetical protein BACCAP... 81 2e-13
gi|94994347|ref|YP_602445.1| Relaxase [Streptococcus pyogen... 80 4e-13
gi|154502910|ref|ZP_02039970.1| hypothetical protein RUMGNA... 80 5e-13
gi|29376805|ref|NP_815959.1| hypothetical protein EF2303 [E... 79 9e-13
gi|154483071|ref|ZP_02025519.1| hypothetical protein EUBVEN... 79 1e-12
gi|50954503|ref|YP_061791.1| mobilization protein [Leifsoni... 78 2e-12
gi|116326567|ref|YP_796488.1| Relaxase/Mobilisation nucleas... 78 2e-12
gi|90900897|gb|ABE01825.1| Rlx [Bacillus megaterium] 75 1e-11
gi|153811411|ref|ZP_01964079.1| hypothetical protein RUMOBE... 74 2e-11
gi|156865252|gb|EDO58683.1| hypothetical protein CLOL250_00... 74 3e-11
gi|125975715|ref|YP_001039625.1| Relaxase/mobilization nucl... 74 4e-11
gi|126697996|ref|YP_001086893.1| putative mobilization prot... 69 1e-09
gi|126699480|ref|YP_001088377.1| putative conjugative trans... 69 1e-09
gi|47092029|ref|ZP_00229823.1| Rlx-like protein [Listeria m... 68 2e-09
gi|154498862|ref|ZP_02037240.1| hypothetical protein BACCAP... 67 4e-09
gi|145954370|ref|ZP_01803376.1| hypothetical protein CdifQ_... 66 8e-09
gi|156867299|gb|EDO60671.1| hypothetical protein CLOLEP_022... 65 1e-08
gi|32470525|ref|NP_863197.1| mobilization protein [Staphylo... 64 2e-08
gi|126698689|ref|YP_001087586.1| putative mobilization prot... 64 2e-08
gi|1333817|emb|CAA26368.1| unnamed protein product [Staphyl... 64 2e-08
gi|148381597|ref|YP_001256137.1| possible mobilisation prot... 64 3e-08
gi|62868687|ref|NP_052695.2| hypothetical protein pC221_p4 ... 64 3e-08
gi|156869000|gb|EDO62372.1| hypothetical protein CLOLEP_007... 64 4e-08
gi|87242901|gb|ABD33947.1| relaxase [uncultured bacterium] 63 6e-08
gi|156866024|gb|EDO59396.1| hypothetical protein CLOLEP_034... 63 6e-08
gi|71903441|ref|YP_280244.1| relaxase [Streptococcus pyogen... 62 9e-08
gi|57854749|ref|YP_187558.1| rlx protein, putative [Staphyl... 62 9e-08
gi|150391665|ref|YP_001321714.1| Relaxase/mobilization nucl... 62 1e-07
gi|4105355|gb|AAD02378.1| mobilization protein [Staphylococ... 62 1e-07
gi|42761433|ref|NP_976278.1| Orf337 [Staphylococcus epiderm... 62 2e-07
gi|4105397|gb|AAD02405.1| mobilization protein [Staphylococ... 62 2e-07
gi|68535060|ref|YP_254608.1| mobilization protein [Staphylo... 61 2e-07
gi|32470587|ref|NP_863255.1| RLX protein [Staphylococcus ep... 61 2e-07
gi|71910615|ref|YP_282165.1| relaxase [Streptococcus pyogen... 61 2e-07
gi|94992630|ref|YP_600729.1| Relaxase [Streptococcus pyogen... 60 3e-07
gi|153815476|ref|ZP_01968144.1| hypothetical protein RUMTOR... 60 5e-07
gi|25045963|gb|AAN71827.1|AF447813_2 MobA-like protein [Sta... 60 5e-07
gi|94994346|ref|YP_602444.1| Relaxase [Streptococcus pyogen... 60 5e-07
gi|153854515|ref|ZP_01995785.1| hypothetical protein DORLON... 58 2e-06
gi|67078372|ref|YP_245990.1| relaxase [Bacillus cereus E33L... 58 2e-06
gi|153852767|ref|ZP_01994204.1| hypothetical protein DORLON... 58 2e-06
gi|94995106|ref|YP_603204.1| Relaxase [Streptococcus pyogen... 58 2e-06
gi|153810203|ref|ZP_01962871.1| hypothetical protein RUMOBE... 57 3e-06
gi|38639781|ref|NP_943089.1| MobA [Staphylococcus aureus] >... 57 3e-06
>gi|15900926|ref|NP_345530.1| Tn5252, relaxase [Streptococcus pneumoniae TIGR4]
gi|111657892|ref|ZP_01408604.1| hypothetical protein SpneT_02000934 [Streptococcus pneumoniae
TIGR4]
gi|14972530|gb|AAK75170.1| Tn5252, relaxase [Streptococcus pneumoniae TIGR4]
Length = 607
Score = 1073 bits (2775), Expect = 0.0, Method: Composition-based stats.
Identities = 607/607 (100%), Positives = 607/607 (100%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI
Sbjct: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV
Sbjct: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR
Sbjct: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV
Sbjct: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH
Sbjct: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
Query: 301 VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP 360
VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP
Sbjct: 301 VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP 360
Query: 361 SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL 420
SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL
Sbjct: 361 SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL 420
Query: 421 DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE 480
DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE
Sbjct: 421 DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE 480
Query: 481 KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVESK 540
KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVESK
Sbjct: 481 KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVESK 540
Query: 541 QEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKG 600
QEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKG
Sbjct: 541 QEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKG 600
Query: 601 DGIDFQK 607
DGIDFQK
Sbjct: 601 DGIDFQK 607
>gi|148988513|ref|ZP_01819960.1| Tn5252, relaxase [Streptococcus pneumoniae SP6-BS73]
gi|147926194|gb|EDK77268.1| Tn5252, relaxase [Streptococcus pneumoniae SP6-BS73]
Length = 607
Score = 897 bits (2319), Expect = 0.0, Method: Composition-based stats.
Identities = 498/607 (82%), Positives = 560/607 (92%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MVITKHFA+HGK YR+K+IKYILNPEKT NLALVS YGM+NFLDFPSYEEMVQMYHENFI
Sbjct: 1 MVITKHFAVHGKCYRKKIIKYILNPEKTENLALVSHYGMRNFLDFPSYEEMVQMYHENFI 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
SNDTLYDFRHDR EENQR IHAHHIIQSFSPEDH+TP+QIN+IGYET+KELTGGKFRFIV
Sbjct: 61 SNDTLYDFRHDRHEENQRLIHAHHIIQSFSPEDHLTPKQINQIGYETMKELTGGKFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATHVDK+H HNHII+NSVD+NSDKKLKW+YKVERNLRMISDRFSKIAGAKIIENRYS+ +
Sbjct: 121 ATHVDKNHFHNHIIVNSVDNNSDKKLKWNYKVERNLRMISDRFSKIAGAKIIENRYSYHQ 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+VYRKTNHKYELKQRLYFLME+S DFEDFKKNAPLLHV+MDF HKHATFF+TDSTM+QV
Sbjct: 181 YKVYRKTNHKYELKQRLYFLMENSTDFEDFKKNAPLLHVKMDFSHKHATFFMTDSTMRQV 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
VRG +LN KQ YTEEFFKNYFAKR++E LMEF+L KV+N++DL++KAKLFGL INPKQKH
Sbjct: 241 VRGNKLNHKQAYTEEFFKNYFAKRKMEELMEFILPKVDNLEDLIKKAKLFGLNINPKQKH 300
Query: 301 VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP 360
VSFQFAGVEVKETELD+KNLYDVEFF+DYF+ RKD +APE +D VQ+YQEE+ SKEKELP
Sbjct: 301 VSFQFAGVEVKETELDKKNLYDVEFFKDYFEKRKDLKAPEVQDLVQVYQEERFSKEKELP 360
Query: 361 SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQL 420
S+EKFWESYQEF+ NRDA+HEFEVELSLNQIEKVVDDGIY+KVKFGIRQEGLIF+PNM+L
Sbjct: 361 SEEKFWESYQEFRRNRDAIHEFEVELSLNQIEKVVDDGIYIKVKFGIRQEGLIFLPNMEL 420
Query: 421 DMEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKE 480
DMEEDKVKVFIRETSSYYVY+KD AEKNCYMKGRTLIRQFS ENQTIP RRK TV+MIKE
Sbjct: 421 DMEEDKVKVFIRETSSYYVYYKDDAEKNCYMKGRTLIRQFSSENQTIPFRRKTTVEMIKE 480
Query: 481 KIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVESK 540
KI EV L+EL+ + SY+TIKDELVHELAASELRIN QER++TLNQVAEYLLASVE+K
Sbjct: 481 KIEEVYTLLELDTDKHSYITIKDELVHELAASELRINAFQERVTTLNQVAEYLLASVENK 540
Query: 541 QEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKG 600
QEMK+NLSKLNIT+ I ++VEK+L LG Q+ELE RYE +V +L+KFINRL+ +SK
Sbjct: 541 QEMKMNLSKLNITDKIGIDVVEKELNELGIQIELESDRYENIVFKLNKFINRLSKKISKE 600
Query: 601 DGIDFQK 607
+GI FQK
Sbjct: 601 EGIGFQK 607
>gi|25011380|ref|NP_735775.1| hypothetical protein gbs1338 [Streptococcus agalactiae NEM316]
gi|24412918|emb|CAD46997.1| Unknown [Streptococcus agalactiae NEM316]
Length = 625
Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats.
Identities = 335/619 (54%), Positives = 461/619 (74%), Gaps = 13/619 (2%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HG+ YRR+LIKYILNP KTNNL LVSD+GM N+LDFP+YEE V+MY NF+
Sbjct: 1 MVVTKHFATHGEKYRRRLIKYILNPNKTNNLKLVSDFGMSNYLDFPTYEETVEMYQANFL 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+NDTLY+FR+DR E+ Q+KIHAHH+IQSFSP+D+++PE+INRIGYET++ELTGG+FRFIV
Sbjct: 61 NNDTLYNFRNDRQEKRQQKIHAHHLIQSFSPDDNLSPEEINRIGYETIQELTGGQFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DK HLHNHI+INS+D NSDKKLKWDY ERN RMISDR SKIAGAKIIENRYSH+
Sbjct: 121 ATHTDKSHLHNHIVINSIDINSDKKLKWDYAQERNFRMISDRISKIAGAKIIENRYSHRD 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
YEVY+K+NHK+ELKQRLYFLM+ S FEDF K A LHV++DF KH+ F +TD MKQV
Sbjct: 181 YEVYKKSNHKFELKQRLYFLMQQSDSFEDFLKKAERLHVKIDFTRKHSRFMMTDRDMKQV 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG +L+++ Y EEFF+ YFAK++IE +EFLL ++++LL KA+ LTI+ KQK+
Sbjct: 241 IRGNKLSKRDLYDEEFFRTYFAKQDIEKRLEFLLDTTNSIEELLLKARELNLTIDFKQKN 300
Query: 301 VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V+F + + ++ K LYDV+FFQ YF+ K E + + Y+ K +E
Sbjct: 301 VTFTLEEDGRRIGLNHKKISDKKLYDVQFFQSYFEEEKIITLEEQGNLQEHYRNFKGDQE 360
Query: 357 KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP 416
+E S ++ +Y+EFK NRD+VHEFEVEL+ NQIEK+VD+GIY+KV FGI+Q G+IF+P
Sbjct: 361 QEKASLDEIESAYEEFKKNRDSVHEFEVELAANQIEKLVDEGIYIKVSFGIKQNGIIFIP 420
Query: 417 NMQLDM-EED---KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK 472
N QLDM EED K KV+IRET+SY+VY+K++++K+ Y+KGRTLIRQ + ++Q +P +K
Sbjct: 421 NYQLDMIEEDDRTKYKVYIRETTSYFVYNKESSDKDRYIKGRTLIRQLTQDSQKLPY-KK 479
Query: 473 ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY 532
TV I++KI+E++ LIEL +++Y +KDE V E+A ++R++E +E++ TLN++AE
Sbjct: 480 PTVASIQQKISEINFLIELNTSDKNYHEMKDEFVTEIAELDIRLHETREKIVTLNKIAEV 539
Query: 533 LL----ASVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK 588
L+ +S++ K + +KLN++E ++ V + QL YE +V RL+
Sbjct: 540 LVNLTSKDSQSRKLAKYDFAKLNLSETLTLEKVNLDILKFQKQLNKYLDNYEDVVRRLEN 599
Query: 589 FINRLNTGLSKGDGIDFQK 607
F+ LN ++ + +Q+
Sbjct: 600 FVEILNKECTEASKVKYQE 618
>gi|146318567|ref|YP_001198279.1| Chromosome segregation ATPase [Streptococcus suis 05ZYH33]
gi|145689373|gb|ABP89879.1| Chromosome segregation ATPase [Streptococcus suis 05ZYH33]
Length = 621
Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats.
Identities = 321/606 (52%), Positives = 443/606 (73%), Gaps = 12/606 (1%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MVITKH+A H + YR+ LI+YILNPEKT L LVSD+GM N+LDFPSYEEMV+MY NF+
Sbjct: 1 MVITKHYATHSRKYRKNLIRYILNPEKTAQLKLVSDFGMSNYLDFPSYEEMVKMYQANFL 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LYD R+DR E+ Q+KIHAHH+IQSFSP+D +TPE+INRIGYETVKELTGG FRFIV
Sbjct: 61 NNDGLYDSRNDRQEKRQQKIHAHHLIQSFSPDDKLTPEEINRIGYETVKELTGGNFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH+D+ H+HNHI+INSVD SDKKLKW+Y +ERNLRMISDR SK AGAKII NRYSHQ+
Sbjct: 121 ATHIDQSHIHNHILINSVDLQSDKKLKWNYALERNLRMISDRISKEAGAKIITNRYSHQQ 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+VYRKTNHK+ELKQRLYFLME S+DFEDF K A LH+ +DF KH TF +TD +
Sbjct: 181 YDVYRKTNHKFELKQRLYFLMEQSKDFEDFLKKAEQLHLTIDFSSKHTTFLMTDRDQVKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG+QLNR++PY E +F+ FAK IE + FLL +V+ + +LL+ A+ GL I KQK+
Sbjct: 241 IRGRQLNRREPYDESYFRQAFAKGAIEQRLHFLLPRVKTLQELLEMAEELGLFIQLKQKN 300
Query: 301 VSFQFA----GVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V+F + + ++ +K LYDV FFQDYF R D +++ + ++ +
Sbjct: 301 VTFTLTENDQKISLGHQQVSKKKLYDVSFFQDYFSERSDTDIELSDNIKEDFEIFLAEQT 360
Query: 357 KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP 416
++L + E Y+ F NR AVHEFEVEL+ +Q++K V+ GI++KV FG+++EGLIF+P
Sbjct: 361 EKLSTVESIVSDYETFSENRKAVHEFEVELAPHQVDKEVEGGIFIKVAFGVKKEGLIFIP 420
Query: 417 NMQLD----MEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK 472
N QLD EE + K+F+RE +SY++Y+K+ ++KN YMKGR LIRQ + +N+++P RR+
Sbjct: 421 NYQLDEIEKEEEKRFKIFLREITSYFIYNKEGSDKNRYMKGRDLIRQLTQDNKSLPYRRR 480
Query: 473 ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY 532
+ ++EKIAEV+ LIEL V N++Y IKDELV E+A ++ ++EL E+ +TLN++AE
Sbjct: 481 PNLKELQEKIAEVNLLIELNVTNRAYTDIKDELVAEIATYDVSMSELNEKNATLNKMAEV 540
Query: 533 LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK 588
L+ +E ++ + SKLN+TE+++ +E+++ + +QL YE+ V +L+
Sbjct: 541 LVNLKSHDIERRRLARYEFSKLNLTESVTLEQIEREISNTQDQLSKLLDNYEESVRKLET 600
Query: 589 FINRLN 594
F+ LN
Sbjct: 601 FVAVLN 606
>gi|146320766|ref|YP_001200477.1| Chromosome segregation ATPase [Streptococcus suis 98HAH33]
gi|145691572|gb|ABP92077.1| Chromosome segregation ATPase [Streptococcus suis 98HAH33]
Length = 621
Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats.
Identities = 320/606 (52%), Positives = 442/606 (72%), Gaps = 12/606 (1%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MVITKH+A H + YR+ LI+YILNPEKT L LVSD+GM N+LDFPSYEEMV+MY NF+
Sbjct: 1 MVITKHYATHSRKYRKNLIRYILNPEKTAQLKLVSDFGMSNYLDFPSYEEMVKMYQANFL 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LYD R+DR E+ Q+KIHAHH+IQSFSP+D +TPE+INRIGYETVKELTGG FRFIV
Sbjct: 61 NNDGLYDSRNDRQEKRQQKIHAHHLIQSFSPDDKLTPEEINRIGYETVKELTGGNFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH+D+ H+HNHI+INSVD SDKKLKW+Y +ERNLRMISDR SK AGAKII NRYSHQ+
Sbjct: 121 ATHIDQSHIHNHILINSVDLQSDKKLKWNYALERNLRMISDRISKEAGAKIITNRYSHQQ 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+VYRKTNHK+ELKQRLYFLME S+DFEDF K A LH+ +DF KH TF +TD +
Sbjct: 181 YDVYRKTNHKFELKQRLYFLMEQSKDFEDFLKKAEQLHLTIDFSSKHTTFLMTDRDQVKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG+QLNR++PY E +F+ FAK IE + FLL +V+ + +LL+ A+ GL I KQK+
Sbjct: 241 IRGRQLNRREPYDESYFRQAFAKGAIEQRLHFLLPRVKTLQELLEMAEELGLFIQLKQKN 300
Query: 301 VSFQFA----GVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V+F + + ++ +K LYDV FFQDYF R D +++ + ++ +
Sbjct: 301 VTFTLTENDQKISLGHQQVSKKKLYDVSFFQDYFSERSDTDIELSDNIKEDFEIFLAEQT 360
Query: 357 KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP 416
++L + E Y+ F NR AVHEFEVEL+ +Q++K + GI++KV FG+++EGLIF+P
Sbjct: 361 EKLSTVESIVSDYETFSENRKAVHEFEVELAPHQVDKELRVGIFIKVAFGVKKEGLIFIP 420
Query: 417 NMQLD----MEEDKVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK 472
N QLD EE + K+F+RE +SY++Y+K+ ++KN YMKGR LIRQ + +N+++P RR+
Sbjct: 421 NYQLDEIEKEEEQRFKIFLREITSYFIYNKEGSDKNRYMKGRDLIRQLTQDNKSLPYRRR 480
Query: 473 ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY 532
+ ++EKIAEV+ LIEL V N++Y IKDELV E+A ++ ++EL E+ +TLN++AE
Sbjct: 481 PNLKELQEKIAEVNLLIELNVTNRAYTDIKDELVAEIATYDVSMSELNEKNATLNKMAEV 540
Query: 533 LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK 588
L+ +E ++ + SKLN+TE+++ +E+++ + +QL YE+ V +L+
Sbjct: 541 LVNLKSHDIERRRLARYEFSKLNLTESVTLEQIEREISNTQDQLSKLLDNYEESVRKLET 600
Query: 589 FINRLN 594
F+ LN
Sbjct: 601 FVAVLN 606
>gi|81096315|ref|ZP_00874662.1| Relaxase/mobilization nuclease domain [Streptococcus suis 89/1591]
gi|80977659|gb|EAP41195.1| Relaxase/mobilization nuclease domain [Streptococcus suis 89/1591]
Length = 619
Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats.
Identities = 322/609 (52%), Positives = 460/609 (75%), Gaps = 13/609 (2%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY+ R+DR E++Q+ IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIV
Sbjct: 61 NNDKLYESRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGRFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+AGAKIIE R+S++
Sbjct: 121 ATHTDKDHVHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRFSYRD 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+ YRK +HK+ELKQRLYFLM+ S+ F+DF + A LHV +DF KH+ F +TD +M +
Sbjct: 181 YQKYRKISHKFELKQRLYFLMQQSKSFDDFLEKAEQLHVHIDFSQKHSRFMMTDRSMTKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG+QL++++ Y E+FF+ YFAK EIE+ +EFLL +V +++ LL KAK LTI+ KQK+
Sbjct: 241 IRGRQLSKRELYDEDFFRTYFAKLEIENRLEFLLNRVNSLEKLLTKAKELNLTIDLKQKN 300
Query: 301 VSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V+F + + ++ K LYDV FFQDYFKN++ + E+ + Y + ++
Sbjct: 301 VTFILEKNGKQICLNHKKISDKKLYDVNFFQDYFKNKEVGDSGGLENLKEQYHAFQEERD 360
Query: 357 KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP 416
K+ S ++ E+++ FK RDAVHEFEVEL+ +QIEK+VD+G+Y+KV FG++Q G IF+P
Sbjct: 361 KDKVSTKEIEEAFETFKETRDAVHEFEVELAGHQIEKLVDEGVYIKVSFGVKQSGFIFIP 420
Query: 417 NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK 472
N QLD+ E+ K KV+IRET+SY++Y+K+ ++KN Y+KGRTLIRQ + +++ IP RR
Sbjct: 421 NYQLDILEEENQTKYKVYIRETTSYFIYNKEHSDKNQYIKGRTLIRQLTNDSRAIPYRR- 479
Query: 473 ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY 532
TV+ ++EKI E++ LIEL ++ Y +KDELV E+A ++++N+ E+++TLN++AE
Sbjct: 480 PTVERLQEKITEINLLIELTETDKRYQDVKDELVAEIAEIDVKLNQTNEKIATLNKMAEV 539
Query: 533 LLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK 588
L+ S++ + + SKLN+TE+I+ V +++K L + L YE +V R+++
Sbjct: 540 LINLKSDDPNSRKLARYDFSKLNLTESITLEQVIEEIKLLQEKFSLYLDEYEGLVSRIER 599
Query: 589 FINRLNTGL 597
F+ LNT +
Sbjct: 600 FVKILNTDI 608
>gi|113120161|gb|ABI30222.1| putative relaxase [Streptococcus macedonicus]
Length = 621
Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats.
Identities = 322/606 (53%), Positives = 455/606 (75%), Gaps = 13/606 (2%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY+ R+DR E++Q+ IHAHH+IQSFSPED++TPE+INRIGY+T+ ELTGG+F+FIV
Sbjct: 61 NNDKLYESRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYDTMMELTGGRFKFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+AGAKIIE R+S++
Sbjct: 121 ATHTDKDHVHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRFSYRD 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+ YR+++HK+ELKQRLYFLM S+ FEDF + A LHV +DF KH+ F +TD M +
Sbjct: 181 YQKYRQSSHKFELKQRLYFLMRQSKSFEDFLEKAEQLHVHIDFSQKHSRFMMTDRAMTKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG+QL+++ Y EEFF+ +FAK+EIES +EFLL +V ++++LL KAK LTI+ KQK+
Sbjct: 241 IRGRQLSKRYLYDEEFFRTHFAKQEIESRLEFLLNRVNSLEELLTKAKELNLTIDLKQKN 300
Query: 301 VSFQF----AGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V F + ++ K LYDV FFQDYFKN + + E+ + Y + ++
Sbjct: 301 VIFILEESGKQFSLSHKKISDKKLYDVNFFQDYFKNMEVGDSEGLENLQEQYHAFQEERD 360
Query: 357 KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP 416
K+ + E+ E+++ FK RDAVHEFEVEL+ +QIEK+VD+GIY+KV FGI+Q GL+F+P
Sbjct: 361 KDKVATEEIEEAFEGFKKRRDAVHEFEVELAEHQIEKLVDEGIYIKVSFGIKQSGLVFIP 420
Query: 417 NMQLD-MEED---KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK 472
N QLD +EED K KV+IRET+SY+VY+K+ ++KN Y+KGR LIRQ + +++ IP +R
Sbjct: 421 NYQLDIIEEDKQKKYKVYIRETTSYFVYNKENSDKNQYIKGRPLIRQLTNDSRMIPYKR- 479
Query: 473 ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY 532
TV+ +++KI+E++ LIEL ++ Y IKDELV E+A ++++ + E+++TLN++AE
Sbjct: 480 PTVESLQKKISEINLLIELTETDKKYQDIKDELVAEIAELDIKLTQTNEKIATLNKMAEV 539
Query: 533 LL----ASVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK 588
+ A + S++ + + SKLN+TE+IS V +++ L +L YE + RL++
Sbjct: 540 FINLKGAELSSQKLARYDFSKLNLTESISLEQVNEEIGVLQEELGHYLDEYEGLARRLER 599
Query: 589 FINRLN 594
F+ LN
Sbjct: 600 FVKVLN 605
>gi|22537401|ref|NP_688252.1| Tn5252, relaxase [Streptococcus agalactiae 2603V/R]
gi|76798016|ref|ZP_00780274.1| Tn5252, relaxase [Streptococcus agalactiae 18RS21]
gi|77406034|ref|ZP_00783111.1| Tn5252, relaxase [Streptococcus agalactiae H36B]
gi|22534276|gb|AAN00125.1|AE014249_6 Tn5252, relaxase [Streptococcus agalactiae 2603V/R]
gi|76586639|gb|EAO63139.1| Tn5252, relaxase [Streptococcus agalactiae 18RS21]
gi|77175370|gb|EAO78162.1| Tn5252, relaxase [Streptococcus agalactiae H36B]
Length = 621
Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats.
Identities = 313/614 (50%), Positives = 460/614 (74%), Gaps = 13/614 (2%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MVITKH+A+HGK YRR+LIKYIL+P+KT NL+L+SD+GM N+LDFP Y E+V+MY NF+
Sbjct: 1 MVITKHYAVHGKKYRRQLIKYILDPKKTRNLSLISDFGMSNYLDFPDYVELVKMYQNNFL 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
SND LYD R DR E+ Q+KIHAHHIIQSFSPED ++PE+INRIGYET+KEL GG+++FIV
Sbjct: 61 SNDQLYDSRFDRQEKKQQKIHAHHIIQSFSPEDKLSPEEINRIGYETIKELIGGQYKFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII-ENRYSHQ 179
ATHVD+DH HNHIIINS++S S KKLKWDY +ERNL+MISDR SK+AGAKII RYSH+
Sbjct: 121 ATHVDQDHCHNHIIINSINSQSQKKLKWDYALERNLQMISDRISKVAGAKIIPPKRYSHR 180
Query: 180 RYEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQ 239
YEVYR++NHKYELKQRL+FLMEHS DF DF + A L+V++DF KH+ FF+TD MKQ
Sbjct: 181 DYEVYRRSNHKYELKQRLFFLMEHSIDFNDFMQKAEQLNVKIDFSRKHSRFFMTDRNMKQ 240
Query: 240 VVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK 299
V++G +LN+++PY++E+F+ YFAK++IE ++EFLLL+ + DDL++KA+L GL + K+K
Sbjct: 241 VIQGDKLNKREPYSKEYFQRYFAKKKIELILEFLLLRSNSFDDLVEKARLLGLELKSKKK 300
Query: 300 HVSFQFAG----VEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSK 355
+ F + + + L +KNLYD +F YFK ++ + +++ + +
Sbjct: 301 TIDFVLSDGKSCISIPNKSLRKKNLYDTTYFDSYFKEHDVFEVLHNNEVKIEFEKFETQQ 360
Query: 356 EKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFV 415
E+ + E+ E+Y+ +K+ RDAVHEFEVE++ QIEK+V DG++VKV GI QEGLIF+
Sbjct: 361 LSEILTVEEITEAYETYKTKRDAVHEFEVEITEEQIEKIVLDGLFVKVWMGIGQEGLIFI 420
Query: 416 PNMQLDMEEDKVK----VFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRR 471
PN QL++ E + K VFIRETSSY++YHK+ +E N +MKGR LIRQ +++N+++P +R
Sbjct: 421 PNHQLNILEQENKKQYQVFIRETSSYFIYHKEDSEMNRFMKGRDLIRQLTFDNKSLPYKR 480
Query: 472 KATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAE 531
+ ++ +++KI E++ L+ L ++N+S++ +KDELV ++A ++ + LQ++ +TLN++AE
Sbjct: 481 RISLVSLQQKIEEINLLMTLNIQNKSFLELKDELVGDIAQLDIELTNLQDKNTTLNKMAE 540
Query: 532 YLLA----SVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLD 587
++ + ++KQ K SK+N+++N++ +E +++ + NQL+ + YE V +LD
Sbjct: 541 VVVNLQSDNQDTKQLAKYECSKMNLSQNVTIGQIESEIEMIQNQLDNKIEEYENAVRKLD 600
Query: 588 KFINRLNTGLSKGD 601
+++ LN K D
Sbjct: 601 EYVRVLNMDKYKTD 614
>gi|149004222|ref|ZP_01829014.1| hypothetical protein CGSSp14BS69_12693 [Streptococcus pneumoniae
SP14-BS69]
gi|147757817|gb|EDK64829.1| hypothetical protein CGSSp14BS69_12693 [Streptococcus pneumoniae
SP14-BS69]
Length = 616
Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats.
Identities = 319/611 (52%), Positives = 448/611 (73%), Gaps = 13/611 (2%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY++R+DR E++Q+ IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIV
Sbjct: 61 NNDKLYEYRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETIMELTGGRFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+AGAKIIE R+S++
Sbjct: 121 ATHTDKDHIHNHILINAIDCNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRFSYRD 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+ YR T+HK+ELKQRLYFLM+ S+ F+DF + A LHV +DF KH+ F +TD M +
Sbjct: 181 YQKYRATSHKFELKQRLYFLMQQSKSFDDFLEKAEQLHVHIDFSQKHSRFMMTDRAMTKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG+QL+++ Y E+FF+ +FAK+EI S +EFLL V +++ LL K+K LTI+ KQK+
Sbjct: 241 IRGRQLSKRDLYDEDFFRMHFAKQEIASRLEFLLNCVNSLEALLTKSKELNLTIDLKQKN 300
Query: 301 VSFQF----AGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V F + ++ + LYDV FFQDYFKN++ + E+ Y+ + ++
Sbjct: 301 VIFILEENGKQFSLSHKKISDEKLYDVNFFQDYFKNKEVGVSEGIENLQAQYRAFQEERD 360
Query: 357 KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP 416
KE S E+ E+++ FK RDAVHEFEV+L+ +QIEK+VD+GIY+KV FGI Q GLIF+P
Sbjct: 361 KEKVSTEEIEEAFETFKEKRDAVHEFEVKLTEHQIEKLVDEGIYIKVSFGINQSGLIFIP 420
Query: 417 NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK 472
N QLD+ E+ K KV+IRET+SY+VY+K+ ++KN Y+KGRTLIRQ + +++ IP RR
Sbjct: 421 NYQLDIMEEENQKKYKVYIRETTSYFVYNKEHSDKNQYIKGRTLIRQLTNDSRVIPYRR- 479
Query: 473 ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY 532
TV+ ++EKI+E+ LIEL ++ Y IKD LV E+A ++++ + E+++TLN++AE
Sbjct: 480 PTVERLQEKISEISLLIELTETDKKYQDIKDNLVSEIAELDIKLTQTNEKIATLNKMAEV 539
Query: 533 LLASVE----SKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK 588
L+ S S++ + SKLN+TE+ + V ++L L + YEK + +L +
Sbjct: 540 LIDSKSEGSGSQKLARHEFSKLNMTESTTLEQVNEELLKLQQEFGNVLDEYEKTIRKLGQ 599
Query: 589 FINRLNTGLSK 599
+ ++K
Sbjct: 600 LFKVFDECINK 610
>gi|149013001|ref|ZP_01833890.1| hypothetical protein CGSSp19BS75_09973 [Streptococcus pneumoniae
SP19-BS75]
gi|147763154|gb|EDK70095.1| hypothetical protein CGSSp19BS75_09973 [Streptococcus pneumoniae
SP19-BS75]
Length = 616
Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats.
Identities = 318/611 (52%), Positives = 447/611 (73%), Gaps = 13/611 (2%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY++R+DR E++Q+ IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIV
Sbjct: 61 NNDKLYEYRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETIMELTGGRFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+AGAKIIE R+S++
Sbjct: 121 ATHTDKDHIHNHILINAIDCNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRFSYRD 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+ YR T+HK+ELKQRLYFLM+ S+ F+DF + A LHV +DF KH+ F +TD M +
Sbjct: 181 YQKYRATSHKFELKQRLYFLMQQSKSFDDFLEKAEQLHVHIDFSQKHSRFMMTDRAMTKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG+QL+++ Y E+FF+ +F K+EI S +EFLL V +++ LL K+K LTI+ KQK+
Sbjct: 241 IRGRQLSKRDLYDEDFFRMHFTKQEIASRLEFLLNCVNSLEGLLTKSKELNLTIDLKQKN 300
Query: 301 VSFQF----AGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V F + ++ + LYDV FFQDYFKN++ + E+ Y+ + ++
Sbjct: 301 VIFILEENGKQFSLSHKKISDEKLYDVNFFQDYFKNKEVGVSEGIENLQAQYRAFQEERD 360
Query: 357 KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP 416
KE S E+ E+++ FK RDAVHEFEV+L+ +QIEK+VD+GIY+KV FGI Q GLIF+P
Sbjct: 361 KEKVSTEEIEEAFETFKEKRDAVHEFEVKLTEHQIEKLVDEGIYIKVSFGINQSGLIFIP 420
Query: 417 NMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK 472
N QLD+ E+ K KV+IRET+SY+VY+K+ ++KN Y+KGRTLIRQ + +++ IP RR
Sbjct: 421 NYQLDIMEEENQKKYKVYIRETTSYFVYNKEHSDKNQYIKGRTLIRQLTNDSRVIPYRR- 479
Query: 473 ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY 532
TV+ ++EKI+E+ LIEL ++ Y IKD LV E+A ++++ + E+++TLN++AE
Sbjct: 480 PTVERLQEKISEISLLIELTETDKKYQDIKDNLVSEIAELDIKLTQTNEKIATLNKMAEV 539
Query: 533 LLASVE----SKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK 588
L+ S S++ + SKLN+TE+ + V ++L L + YEK + +L +
Sbjct: 540 LINSKSEGSGSQKLARHEFSKLNMTESTTLEQVNEELLKLQQEFGNVLDEYEKTIRKLGQ 599
Query: 589 FINRLNTGLSK 599
+ ++K
Sbjct: 600 LFKVFDECINK 610
>gi|149019653|ref|ZP_01834972.1| hypothetical protein CGSSp23BS72_03603 [Streptococcus pneumoniae
SP23-BS72]
gi|147931028|gb|EDK82008.1| hypothetical protein CGSSp23BS72_03603 [Streptococcus pneumoniae
SP23-BS72]
Length = 621
Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats.
Identities = 318/607 (52%), Positives = 453/607 (74%), Gaps = 13/607 (2%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPS+ EMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSHAEMVEMYNVNFS 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY+ R+DR E++Q+ IHAH++IQSFSPED++TPE+INRIGYE + ELTGG+F+FIV
Sbjct: 61 NNDKLYESRNDRQEKHQQTIHAHYLIQSFSPEDNLTPEEINRIGYEIMMELTGGRFKFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+ GAKIIE RYS++
Sbjct: 121 ATHTDKDHVHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKVTGAKIIEKRYSYRD 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+ YR+++HK+ELKQRLYFL++ S+ F+DF + A LHV++DF KH+ F +TD TM +
Sbjct: 181 YKKYRESSHKFELKQRLYFLLQQSKSFDDFLEKAKQLHVQIDFSQKHSRFLMTDRTMIKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG+QL+++ Y E+FFK YFAK+EIES ++FLL V ++++L KAK LTI KQK+
Sbjct: 241 IRGRQLSKRDLYDEDFFKTYFAKQEIESRLKFLLKSVYSLEELHVKAKELNLTIELKQKN 300
Query: 301 VSFQF----AGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V F + + ++ K LYDV+FF YF++R+ E+ + +Q + +
Sbjct: 301 VMFTLEEDGKKISLSHKKISDKKLYDVQFFNRYFEDREVRDIQALENLQEDFQTFREEQH 360
Query: 357 KELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVP 416
KE S E+ E+++++K RDA+HEFE+EL+ NQIEK+VDDG+Y++V FGI+Q GLIF+P
Sbjct: 361 KEKVSAEEIEEAFKKYKEKRDAIHEFEIELTDNQIEKLVDDGVYIQVSFGIKQSGLIFIP 420
Query: 417 NMQLDM-EED---KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRK 472
N QLD+ EED K KV+IRETSSY+VY+K+ + NC++KGRTLIRQ S ++Q +P RR
Sbjct: 421 NYQLDIFEEDNHKKYKVYIRETSSYFVYNKENMDNNCFIKGRTLIRQLSNDSQKLPYRR- 479
Query: 473 ATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEY 532
T+ +KEKI+E++ +IEL N+ Y IKDELV E+A ++++ E QE+++TLN++AE
Sbjct: 480 PTLKSLKEKISEINLMIELSNTNKQYQEIKDELVLEIAEIDMQLEETQEKIATLNKMAEV 539
Query: 533 LL----ASVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDK 588
L+ E+++ K + ++N+TE+I + + + L +L E +YE++ RLD
Sbjct: 540 LINLKSEDHETRKLAKYDFDQMNMTESIMLDRLNTDILKLQQELGNEINKYEEIARRLDL 599
Query: 589 FINRLNT 595
F+ +NT
Sbjct: 600 FVKIINT 606
>gi|951051|gb|AAC98434.1| relaxase [Streptococcus pneumoniae]
Length = 431
Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats.
Identities = 283/414 (68%), Positives = 356/414 (85%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MVITKHFAIHGK+YR KLIKYILNP KT NL LVSD+GM+N+LDFPSY+E+V+MY++NF+
Sbjct: 1 MVITKHFAIHGKNYRSKLIKYILNPSKTKNLTLVSDFGMRNYLDFPSYKELVKMYNDNFL 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
SNDTLY+FRHDR E NQRKIH+HHIIQSFSP+DH+TPEQINRIGYE KELTGG+FRFIV
Sbjct: 61 SNDTLYEFRHDRQEVNQRKIHSHHIIQSFSPDDHLTPEQINRIGYEAAKELTGGRFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATHVDK H+HNHII+NS+D NSDKK WDYK E NLRM+SDR SKIAGAKIIENRYSH++
Sbjct: 121 ATHVDKGHIHNHIILNSIDQNSDKKFLWDYKAEHNLRMVSDRLSKIAGAKIIENRYSHRQ 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
YEVYRKTN+KYE+KQR+YFL+E+S++FED KK A LH+++DFRHKH T+F+TDS MKQV
Sbjct: 181 YEVYRKTNYKYEIKQRVYFLIENSKNFEDLKKKAKALHLKIDFRHKHVTYFMTDSNMKQV 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
VR +L+RKQPY E +F+ F +REI +++EFLL K++NM++L+Q+A++FGL I PK+KH
Sbjct: 241 VRDSKLSRKQPYNETYFEKKFVQREIINILEFLLPKMKNMNELIQRAEVFGLKIIPKEKH 300
Query: 301 VSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELP 360
V F+F G+++ E EL + NLY V +FQDYF N+ + + ++ V+LY EEK+ KEKELP
Sbjct: 301 VLFEFDGIKLAEQELVKSNLYSVSYFQDYFNNKNETFVLDNKNLVELYNEEKIIKEKELP 360
Query: 361 SDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIF 414
S+E W+SYQ+FK NRDAVHEFEVEL+LNQIE+VV+ GIY+KV+FGI ++ L
Sbjct: 361 SEEMVWKSYQDFKRNRDAVHEFEVELNLNQIEEVVEHGIYIKVQFGIDKKDLFL 414
>gi|148985010|ref|ZP_01818253.1| hypothetical protein CGSSp3BS71_00285 [Streptococcus pneumoniae
SP3-BS71]
gi|147922708|gb|EDK73825.1| hypothetical protein CGSSp3BS71_00285 [Streptococcus pneumoniae
SP3-BS71]
Length = 379
Score = 387 bits (995), Expect = e-106, Method: Composition-based stats.
Identities = 214/377 (56%), Positives = 295/377 (78%), Gaps = 4/377 (1%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILN +KT+NL LVSD+GM N+LDFPS+ EMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNLDKTDNLKLVSDFGMSNYLDFPSHAEMVEMYNVNFT 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY+ R+DR E++Q+ IHAHHIIQSFSPED++TPE+INRIGYET+ ELTGG+F+FIV
Sbjct: 61 NNDKLYESRNDRQEKHQQTIHAHHIIQSFSPEDNLTPEEINRIGYETMMELTGGRFKFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+ GAKIIE RYS++
Sbjct: 121 ATHTDKDHVHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKMTGAKIIEKRYSYRD 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+ Y++++HK+ELKQRLYFL++ S+ F+DF + A LHV++DF KH+ F +TD TM +
Sbjct: 181 YKKYKESSHKFELKQRLYFLLQQSKSFDDFLEKAKQLHVQIDFSQKHSRFLMTDRTMIKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKH 300
+RG+QL+++ Y EEFF+ +FAK+EIES +EFLL +V +++DL+ KAK LTI+ KQK+
Sbjct: 241 IRGRQLSKRDLYDEEFFRTHFAKQEIESRLEFLLNRVNSLEDLITKAKELNLTIDLKQKN 300
Query: 301 VSFQF----AGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKE 356
V+F + + ++ K LYDV+FFQDYFKN++ + E+ + Y + ++
Sbjct: 301 VTFILEENNQKISLGHQKISDKKLYDVKFFQDYFKNKEVVASEGLENLQEQYHAFQEERD 360
Query: 357 KELPSDEKFWESYQEFK 373
K+ S E+ E+++ FK
Sbjct: 361 KDKVSTEEIEEAFKTFK 377
>gi|81096447|ref|ZP_00874791.1| Relaxase/mobilization nuclease domain [Streptococcus suis 89/1591]
gi|80977522|gb|EAP41061.1| Relaxase/mobilization nuclease domain [Streptococcus suis 89/1591]
Length = 300
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 195/299 (65%), Positives = 253/299 (84%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPSYEEMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSYEEMVEMYNVNFT 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY+ R+DR E++Q+ IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIV
Sbjct: 61 NNDKLYESRNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGRFRFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DK+H+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+AGAKIIE R+S++
Sbjct: 121 ATHTDKNHVHNHILINAIDRNSDKKLIWNYTLERNLRMISDRISKVAGAKIIEKRFSYRD 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQV 240
Y+ YR+++HK+ELKQRLYFLM+ S+ F+DF + A LHV +DF KH+ F +TD M +
Sbjct: 181 YQKYRQSSHKFELKQRLYFLMQQSKSFDDFLEKAVHLHVHIDFSQKHSRFMMTDRAMTKP 240
Query: 241 VRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK 299
+RG+QL+++ Y EEFF+ YFAK+EIES +EFLL +V ++++LL KAK LTI+ KQK
Sbjct: 241 IRGRQLSKRDLYDEEFFRTYFAKQEIESRLEFLLNRVNSLEELLTKAKELNLTIDLKQK 299
>gi|148995448|ref|ZP_01824120.1| Tn5252, relaxase [Streptococcus pneumoniae SP9-BS68]
gi|147926737|gb|EDK77803.1| Tn5252, relaxase [Streptococcus pneumoniae SP9-BS68]
Length = 205
Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats.
Identities = 146/205 (71%), Positives = 184/205 (89%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPS+ EMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSHTEMVEMYNVNFT 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY+ R+DR E++Q+ IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+F+FIV
Sbjct: 61 NNDKLYESRNDRQEKHQQTIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGRFKFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DKDH+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+AGAKIIE RYS++
Sbjct: 121 ATHTDKDHVHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRYSYRG 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSR 205
Y+ YR+++HK+ELKQRLYFLM+ S+
Sbjct: 181 YKKYRESSHKFELKQRLYFLMQQSK 205
>gi|15903001|ref|NP_358551.1| Tn5252, relaxase, truncation [Streptococcus pneumoniae R6]
gi|116516207|ref|YP_816414.1| Tn5252, relaxase [Streptococcus pneumoniae D39]
gi|15458568|gb|AAK99761.1| Tn5252, relaxase, truncation [Streptococcus pneumoniae R6]
gi|116076783|gb|ABJ54503.1| Tn5252, relaxase [Streptococcus pneumoniae D39]
Length = 205
Score = 288 bits (736), Expect = 9e-76, Method: Composition-based stats.
Identities = 145/205 (70%), Positives = 183/205 (89%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
MV+TKHFA HGK YRR+LIKYILNP+KT+NL LVSD+GM N+LDFPS+ EMV+MY+ NF
Sbjct: 1 MVVTKHFATHGKKYRRRLIKYILNPDKTDNLKLVSDFGMSNYLDFPSHTEMVEMYNVNFT 60
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ND LY+ R+DR E++Q+ IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+F+FIV
Sbjct: 61 NNDKLYESRNDRQEKHQQTIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGRFKFIV 120
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
ATH DKDH+HNHI+IN++D NSDKK W+Y +ERNLRMISDR SK+AGAKIIE RYS++
Sbjct: 121 ATHTDKDHVHNHILINAIDRNSDKKFIWNYALERNLRMISDRISKMAGAKIIEKRYSYRG 180
Query: 181 YEVYRKTNHKYELKQRLYFLMEHSR 205
Y+ YR+++HK+ELKQRLYFLM+ S+
Sbjct: 181 YKKYRESSHKFELKQRLYFLMQQSK 205
>gi|148995449|ref|ZP_01824121.1| hypothetical protein CGSSp9BS68_00197 [Streptococcus pneumoniae
SP9-BS68]
gi|147926738|gb|EDK77804.1| hypothetical protein CGSSp9BS68_00197 [Streptococcus pneumoniae
SP9-BS68]
Length = 386
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 158/380 (41%), Positives = 247/380 (65%), Gaps = 13/380 (3%)
Query: 232 ITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFG 291
+TD M + +RG+QL+++ Y E+FF+ +FAK+EI S +EFLL V +++ LL K+K
Sbjct: 2 MTDRAMTKPIRGRQLSKRDLYDEDFFRMHFAKQEIASRLEFLLNCVNSLEGLLTKSKELN 61
Query: 292 LTINPKQKHVSFQF----AGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQL 347
LTI+ KQK+V F + ++ + LYDV FFQDYFKN++ + E+
Sbjct: 62 LTIDLKQKNVIFILEENGKQFSLSHKKISDEKLYDVNFFQDYFKNKEVGVSEGIENLQAQ 121
Query: 348 YQEEKLSKEKELPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGI 407
Y+ + ++KE S E+ E+++ FK RDAVHEFEV+L+ +QIEK+VD+GIY+KV FGI
Sbjct: 122 YRAFQEERDKEKVSTEEIEEAFETFKEKRDAVHEFEVKLTEHQIEKLVDEGIYIKVSFGI 181
Query: 408 RQEGLIFVPNMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYE 463
Q GLIF+PN QLD+ E+ K KV+IRET+SY+VY+K+ ++KN Y+KGRTLIRQ + +
Sbjct: 182 NQSGLIFIPNYQLDIMEEENQKKYKVYIRETTSYFVYNKEHSDKNQYIKGRTLIRQLTND 241
Query: 464 NQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERM 523
++ IP RR TV+ ++EKI+E+ LIEL ++ Y IKD LV E+A ++++ + E++
Sbjct: 242 SRVIPYRR-PTVERLQEKISEISLLIELTETDKKYQDIKDNLVSEIAELDIKLTQTNEKI 300
Query: 524 STLNQVAEYLLASVE----SKQEMKLNLSKLNITENISANIVEKKLKSLGNQLELERGRY 579
+TLN++AE L+ S S++ + SKLN+TE+ + V ++L L + Y
Sbjct: 301 ATLNKMAEVLINSKSEGSGSQKLARHEFSKLNMTESTTLEQVNEELLKLQQEFGNVLDEY 360
Query: 580 EKMVVRLDKFINRLNTGLSK 599
EK + +L + + ++K
Sbjct: 361 EKTIRKLGQLFKVFDECINK 380
>gi|32481511|gb|AAP84039.1| relaxase [Streptococcus suis]
Length = 192
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 121/190 (63%), Positives = 161/190 (84%)
Query: 69 RHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDH 128
R+DR E++Q+ IHAHH+IQSFSPED++TPE+INRIGYET+ ELTGG+FRFIVATH DKDH
Sbjct: 3 RNDRQEKHQQNIHAHHLIQSFSPEDNLTPEEINRIGYETMMELTGGRFRFIVATHTDKDH 62
Query: 129 LHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRKTN 188
+HNHI+IN++D NSDKKL W+Y +ERNLRMISDR SK+AGAKIIE R+S++ Y+ YRK +
Sbjct: 63 VHNHILINAIDRNSDKKLIWNYALERNLRMISDRISKMAGAKIIEKRFSYRDYQKYRKIS 122
Query: 189 HKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQLNR 248
HK+ELKQRLYFLM+ S+ F+DF + A LH +DF KH+ F +TD +M + +RG+QL++
Sbjct: 123 HKFELKQRLYFLMQQSKSFDDFLEKAEQLHAHIDFSQKHSRFMMTDRSMTKPIRGRQLSK 182
Query: 249 KQPYTEEFFK 258
++ Y E+FF+
Sbjct: 183 RELYDEDFFR 192
>gi|148985011|ref|ZP_01818254.1| hypothetical protein CGSSp3BS71_00290 [Streptococcus pneumoniae
SP3-BS71]
gi|147922709|gb|EDK73826.1| hypothetical protein CGSSp3BS71_00290 [Streptococcus pneumoniae
SP3-BS71]
Length = 229
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 99/219 (45%), Positives = 155/219 (70%), Gaps = 9/219 (4%)
Query: 384 VELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEED----KVKVFIRETSSYYV 439
+EL+ NQIEK+VD G+Y+KV FG++Q GLIF+PN QLD+ E+ K KV+IRETSSY+V
Sbjct: 1 MELAENQIEKLVDKGVYIKVSFGVKQSGLIFIPNYQLDIMEEENHKKYKVYIRETSSYFV 60
Query: 440 YHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYV 499
Y+K+ + NC++KGRTLIRQ S ++Q +P RR T+ ++EKI+E++ +IEL N+ Y
Sbjct: 61 YNKENMDNNCFIKGRTLIRQLSNDSQKLPYRR-PTLKSLQEKISEINLMIELSNTNKQYQ 119
Query: 500 TIKDELVHELAASELRINELQERMSTLNQVAEYLL----ASVESKQEMKLNLSKLNITEN 555
IKDELV E+A ++++ E QE+++TLN++AE L+ E+++ + + SKLN+TE+
Sbjct: 120 EIKDELVLEIAEIDMKLEETQEKIATLNKMAEVLINLKSEDHETRKLARYDFSKLNLTES 179
Query: 556 ISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLN 594
S V ++++ L L+ +EK +RL+ F++ LN
Sbjct: 180 TSLENVNEEIRVLQENLDYYLYEFEKRAIRLEIFVSTLN 218
>gi|148998879|ref|ZP_01826315.1| hypothetical protein CGSSp11BS70_00225 [Streptococcus pneumoniae
SP11-BS70]
gi|147755306|gb|EDK62357.1| hypothetical protein CGSSp11BS70_00225 [Streptococcus pneumoniae
SP11-BS70]
Length = 234
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 97/220 (44%), Positives = 153/220 (69%), Gaps = 9/220 (4%)
Query: 384 VELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEED----KVKVFIRETSSYYV 439
+EL+ NQIEK+VD G+Y+KV FG++Q GLIF+PN QLD+ E+ K KV+IRETSSY+V
Sbjct: 1 MELAENQIEKLVDKGVYIKVSFGVKQSGLIFIPNYQLDIMEEENHKKYKVYIRETSSYFV 60
Query: 440 YHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYV 499
Y+K+ + NC++KGRTLIRQ S ++Q +P RR T+ ++EKI+E++ +IEL N+ Y
Sbjct: 61 YNKENMDNNCFIKGRTLIRQLSNDSQKLPYRR-PTLKSLQEKISEINLMIELSNTNKQYQ 119
Query: 500 TIKDELVHELAASELRINELQERMSTLNQVAEYLL----ASVESKQEMKLNLSKLNITEN 555
IKDE V E+A ++++ E QE+++TLN++AE L+ E+++ K + ++N+TE+
Sbjct: 120 EIKDEHVLEIAEIDMKLEETQEKIATLNKMAEVLINLKSEDHETRKLAKYDFDQMNMTES 179
Query: 556 ISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNT 595
I + + + L +L E +YE++ RLD F+ +NT
Sbjct: 180 IMLDRLNTDILKLQQELGNEINKYEEIARRLDLFVKIINT 219
>gi|81096448|ref|ZP_00874792.1| similar to conjugative transposon relaxase [Streptococcus suis
89/1591]
gi|80977523|gb|EAP41062.1| similar to conjugative transposon relaxase [Streptococcus suis
89/1591]
Length = 234
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 94/220 (42%), Positives = 153/220 (69%), Gaps = 9/220 (4%)
Query: 384 VELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEED----KVKVFIRETSSYYV 439
+EL+ +QIEK+VD+GIY+KV FG++Q GLIF+PN LD+ E+ K KV+IRET+SY++
Sbjct: 1 MELAGHQIEKLVDEGIYIKVSFGVKQSGLIFIPNFNLDILEEENQTKYKVYIRETTSYFI 60
Query: 440 YHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYV 499
Y+K+ ++KN Y+KGRTLIRQ + +++ IP RR TV+ ++EKI E++ LIEL ++ Y
Sbjct: 61 YNKEHSDKNQYIKGRTLIRQLTNDSRAIPYRR-PTVERLQEKITEINLLIELTETDKRYQ 119
Query: 500 TIKDELVHELAASELRINELQERMSTLNQVAEYLLA----SVESKQEMKLNLSKLNITEN 555
+KDELV E+A ++++N+ E+++ LN++AE L+ S++ + + SKLN+TE+
Sbjct: 120 DVKDELVAEIAELDVKLNQTNEKIAILNKMAEVLINLKSDDPNSRKLARYDFSKLNLTES 179
Query: 556 ISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNT 595
I+ V ++++ L L YE + +L+ F+ LNT
Sbjct: 180 ITLEQVTEEIRVLQEDLGHYLDEYEGLSRKLETFVKILNT 219
>gi|25011172|ref|NP_735567.1| hypothetical protein gbs1121 [Streptococcus agalactiae NEM316]
gi|23095571|emb|CAD46780.1| unknown [Streptococcus agalactiae NEM316]
Length = 543
Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 105/287 (36%), Positives = 163/287 (56%), Gaps = 21/287 (7%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKT-----NNLA-------LVSDYGMKNFLDFPSY 48
MV+TK I ++ I YI + T NLA +V+ MK +
Sbjct: 1 MVVTKVIQIKSSKNLKRAINYIARDDATLIKGNGNLADEDYSYEVVNGQVMKRLVSGHDL 60
Query: 49 EEM--VQMYHENFI----SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINR 102
++ M +E+F+ S D LYD +N ++ AHH+IQSFSP D +TPE++N
Sbjct: 61 TDISDTDMIYEDFMLLKQSVDALYDNDTLSDLKNPNRVLAHHVIQSFSPNDELTPEEVNE 120
Query: 103 IGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDR 162
IG +T ELTGG ++F+VATH DK HLHNHII ++ + + KK +W +++L ISD+
Sbjct: 121 IGRKTALELTGGDYQFVVATHQDKGHLHNHIIFSTTNQVTLKKFRWQKSTKKSLEHISDK 180
Query: 163 FSKIAGAKIIEN--RYSHQRYEVY-RKTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHV 219
+++ GAKI+E R S+ Y + RK N +YE+K+RL FL++HS D +DF + A L++
Sbjct: 181 HAELYGAKILEPKLRNSYTDYSAWRRKNNFRYEIKERLDFLLKHSLDKDDFFQKAKALNL 240
Query: 220 EMDFRHKHATFFITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKREI 266
+D K+ T+ + DS ++ VR + L++K Y + FA E+
Sbjct: 241 HIDTSGKYVTYKLIDSPQERPVRDRTLSKKGKYYLDKMVERFAINEV 287
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 66/298 (22%), Positives = 142/298 (47%), Gaps = 22/298 (7%)
Query: 239 QVVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQ 298
+++ K N Y+ KN F + EI+ ++FLL + DD QKAK L I+
Sbjct: 188 KILEPKLRNSYTDYSAWRRKNNF-RYEIKERLDFLLKHSLDKDDFFQKAKALNLHIDTSG 246
Query: 299 KHVSFQFAGVEVKETELDQKNLYDVEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKE 358
K+V+++ + D+ +++ D E+ + +
Sbjct: 247 KYVTYKLIDSPQERPVRDRTLSKKGKYYLDKMV-------------------ERFAINEV 287
Query: 359 LPSDEKFWESYQEFKSNRDAVHEFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNM 418
+ + + E Y E ++ + E +V + QI+++ + I+V + FG+ ++G + +P
Sbjct: 288 VYNLDHIKEKYDEEQAKKAEDFEMKVRIEPWQIKQLTNQSIHVSIIFGLDRQGTVAIPAR 347
Query: 419 QLDMEED-KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDM 477
LD ED ++++ +Y + D +E+N ++KG TLI+Q S +N + L + V
Sbjct: 348 MLDQNEDGSFTAYLKKNDFFYFLNADHSEQNRFVKGTTLIKQLSAQNGEVILTKNKHVAE 407
Query: 478 IKEKIAEVDALIELEVENQS-YVTIKDELVHELAASELRINELQERMSTLNQVAEYLL 534
+ + E + L +V + + ++ +K+ + +L ++ + +L ++M+ LN+V L+
Sbjct: 408 LNRLVDEFNFLAANQVTDSTQFMQLKETFLEQLVETDKTLEQLDDKMTYLNKVLGALM 465
>gi|20138595|sp|Q48722|LTRB_LACLC Group II intron-interrupted relaxase ltrB (Conjugative nickase)
Length = 563
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 94/258 (36%), Positives = 146/258 (56%), Gaps = 26/258 (10%)
Query: 18 LIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRME--- 74
L YI NP+KT + LVS +G+ N D + E + +S T ++F +
Sbjct: 41 LFPYISNPDKTMSKQLVSGHGITNVYD--AANEFIATKKLKALSKGTDFNFDPQTGKVRF 98
Query: 75 -----ENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHL 129
E + HH+IQSFSP+D++TPEQI+ IG +T+ E TGG++ F++ATHVD++H+
Sbjct: 99 NVESLEKNNAVLGHHLIQSFSPDDNLTPEQIHEIGRQTILEFTGGEYEFVIATHVDREHI 158
Query: 130 HNHIIINSVDSNSDKKLKWD------------YKVER-NLRMISDRFSKIAGAKIIENR- 175
HNHII NS + + K+ W Y V + N +SD+ + GAKIIE
Sbjct: 159 HNHIIFNSTNLYTGKQFDWKVIPKEKTKSGKAYDVTKNNFEKVSDKIASRYGAKIIEKSP 218
Query: 176 -YSHQRYEVYR-KTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFIT 233
SH +Y ++ ++ +K ++KQRL +L+E S D EDFK+ AP L++ DF K T+ +
Sbjct: 219 GNSHLKYTKWQTQSIYKSQIKQRLDYLLEMSSDIEDFKRKAPALNLSFDFSGKWTTYRLL 278
Query: 234 DSTMKQVVRGKQLNRKQP 251
D + RG+ L++ +P
Sbjct: 279 DEPQMKNTRGRNLDKNRP 296
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 157/343 (45%), Gaps = 20/343 (5%)
Query: 263 KREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKHVSFQFAGVEVKETELDQKNLYD 322
K +I+ +++LL +++D +KA L SF F+G LD+ + +
Sbjct: 235 KSQIKQRLDYLLEMSSDIEDFKRKAPALNL---------SFDFSGKWTTYRLLDEPQMKN 285
Query: 323 VEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELPSDEKFWESYQEFKSNRDAVHEF 382
++ KNR PE + + + + + E L DE E Y+E ++
Sbjct: 286 TRG-RNLDKNR-----PEKNNLESIIERLE-TNELSLTVDE-VAERYEEKVDVVKQDFDY 337
Query: 383 EVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEEDK-VKVFIRETSSYYVYH 441
+V + QI+ + G Y+ V FGI G IF+ ++D E++ +++++ ++ +
Sbjct: 338 QVTVEKGQIDHMTSKGFYLNVDFGIADRGQIFIGGYKVDQLENRDCVLYLKKNETFRLLS 397
Query: 442 KDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEV-ENQSYVT 500
+ A Y+ G L +Q N T+PL+++ + I + + ++ L E V E +
Sbjct: 398 EKEASFTKYLTGHDLAKQLGLYNGTVPLKKEPVISTINQLVDAINFLAEHGVTEGTQFNN 457
Query: 501 IKDELVHELAASELRINELQERMSTLNQVAEYLLASVESKQEMKLN-LSKLNITENISAN 559
++ +L+ L +E ++ + ++ L ++A+ L+ + +N L L + +I
Sbjct: 458 MESQLMSALGEAEEKLYVIDNKIMELTKIAKLLIEKESDHSQAVINELENLGVAPSIKYQ 517
Query: 560 IVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKGDG 602
+ ++L+S ++ + ++++ V ++ F T L + G
Sbjct: 518 DIHQELQSEKMSRKILKNKFDQPVDEINTFNEIRVTTLEENKG 560
>gi|94990425|ref|YP_598525.1| Relaxase [Streptococcus pyogenes MGAS10270]
gi|94543933|gb|ABF33981.1| Relaxase [Streptococcus pyogenes MGAS10270]
Length = 231
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 88/209 (42%), Positives = 147/209 (70%), Gaps = 8/209 (3%)
Query: 389 NQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEED----KVKVFIRETSSYYVYHKDA 444
+QIE+++ + IY+KV FG++Q GLIF+PN QLD+ ++ K KV+IRET+ +++Y+K+A
Sbjct: 3 HQIERLIAEDIYIKVSFGVKQSGLIFIPNYQLDIRKEENHKKYKVYIRETAQFFIYNKEA 62
Query: 445 AEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYVTIKDE 504
+E N YM+G LI Q + ++++IP RR+ T+D +K+KI E+ LIEL+ EN+ Y IKD+
Sbjct: 63 SELNRYMRGHELICQLTNDSKSIPKRRRQTIDTLKKKIEEISLLIELDTENKPYQDIKDD 122
Query: 505 LVHELAASELRINELQERMSTLNQVAEYLL----ASVESKQEMKLNLSKLNITENISANI 560
+V ++A +L I ELQ+ ++ LN+VAE LL +E+++ + + +K+N+T I
Sbjct: 123 IVKDMAQLDLTITELQDHIAHLNKVAEVLLNLNNNDIENRRLARYDYAKMNLTAAIKIEE 182
Query: 561 VEKKLKSLGNQLELERGRYEKMVVRLDKF 589
VEK++++ N+L + YE +V RL+KF
Sbjct: 183 VEKEIETSQNELNISIDEYEYLVRRLEKF 211
>gi|20138594|sp|Q48665|LTRB_LACLM Group II intron-interrupted relaxase ltrB (Conjugative nickase)
(Mobilization protein mobA)
gi|126566161|gb|AAB06502.2| relaxase [Lactococcus lactis subsp. lactis]
Length = 563
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 100/307 (32%), Positives = 165/307 (53%), Gaps = 28/307 (9%)
Query: 18 LIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRME--- 74
L YI NP+KT + LVS +G+ N D + E + +S T ++F +
Sbjct: 41 LFPYISNPDKTMSKQLVSGHGITNVYD--AANEFIATKKLKALSKGTDFNFDPQTGKVRF 98
Query: 75 -----ENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHL 129
E + HH+IQSFSP+D++TPEQI+ IG +T+ E TGG++ F++ATHVD++H+
Sbjct: 99 NVESLEKNNAVLGHHLIQSFSPDDNLTPEQIHEIGRQTILEFTGGEYEFVIATHVDREHI 158
Query: 130 HNHIIINSVDSNSDKKLKWD------------YKVER-NLRMISDRFSKIAGAKIIENR- 175
HNHII NS + + K+ W Y V + N +SD+ + GAKIIE
Sbjct: 159 HNHIIFNSTNLYTGKQFDWKVIPKEKTKSGKAYDVTKNNFEKVSDKIASRYGAKIIEKSP 218
Query: 176 -YSHQRYEVYR-KTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFIT 233
SH +Y ++ ++ +K ++KQRL +L+E S D EDFK+ A L++ DF K T+ +
Sbjct: 219 GNSHLKYTKWQTQSIYKSQIKQRLDYLLEMSSDIEDFKRKATALNLSFDFSGKWTTYRLL 278
Query: 234 DSTMKQVVRGKQLNRKQP--YTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFG 291
D + RG+ L++ +P Y E E+ ++ ++ + E D++++ +
Sbjct: 279 DEPQMKNTRGRNLDKNRPEKYNLESIIERLETNELSLTVDEVVERYEEKVDVVKQDFDYQ 338
Query: 292 LTINPKQ 298
+T+ Q
Sbjct: 339 VTVEKGQ 345
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 157/343 (45%), Gaps = 20/343 (5%)
Query: 263 KREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKHVSFQFAGVEVKETELDQKNLYD 322
K +I+ +++LL +++D +KA L SF F+G LD+ + +
Sbjct: 235 KSQIKQRLDYLLEMSSDIEDFKRKATALNL---------SFDFSGKWTTYRLLDEPQMKN 285
Query: 323 VEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELPSDEKFWESYQEFKSNRDAVHEF 382
++ KNR PE + + + + + E L DE E Y+E ++
Sbjct: 286 TRG-RNLDKNR-----PEKYNLESIIERLE-TNELSLTVDEVV-ERYEEKVDVVKQDFDY 337
Query: 383 EVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEEDK-VKVFIRETSSYYVYH 441
+V + QI+ + G Y+ V FGI G IF+ ++D E++ +++++ ++ +
Sbjct: 338 QVTVEKGQIDHMTSKGFYLNVDFGIADRGQIFIGGYKVDQLENRDCVLYLKKNETFRLLS 397
Query: 442 KDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEV-ENQSYVT 500
+ A Y+ G L +Q N T+PL+++ + I + + ++ L E V E +
Sbjct: 398 EKEASFTKYLTGHDLAKQLGLYNGTVPLKKEPVISTINQLVDAINFLAEHGVTEGTQFNN 457
Query: 501 IKDELVHELAASELRINELQERMSTLNQVAEYLLASVESKQEMKLN-LSKLNITENISAN 559
++ +L+ L +E ++ + ++ L ++A+ L+ + +N L L + +I
Sbjct: 458 MESQLMSALGEAEEKLYVIDNKIMELTKIAKLLIEKESDHSQAVINELENLGVGPSIKYQ 517
Query: 560 IVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKGDG 602
+ ++L+S ++ + ++E+ V ++ F T L + G
Sbjct: 518 DIHQELQSEKMSRKILKNKFEQTVDEINTFNEIRVTTLEENKG 560
>gi|126566159|gb|AAP60026.2| LtrB [Shuttle vector pCOMT-Kan]
Length = 563
Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 100/307 (32%), Positives = 165/307 (53%), Gaps = 28/307 (9%)
Query: 18 LIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRME--- 74
L YI NP+KT + LVS +G+ N D + E + +S T ++F +
Sbjct: 41 LFPYISNPDKTMSKQLVSGHGITNVYD--AANEFIATKKLKALSKGTDFNFDPQTGKVRF 98
Query: 75 -----ENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHL 129
E + HH+IQSFSP+D++TPEQI+ IG +T+ E TGG++ F++ATHVD++H+
Sbjct: 99 NVESLEKNNAVLGHHLIQSFSPDDNLTPEQIHEIGRQTILEFTGGEYEFVIATHVDREHI 158
Query: 130 HNHIIINSVDSNSDKKLKWD------------YKVER-NLRMISDRFSKIAGAKIIENR- 175
HNHII NS + + K+ W Y V + N +SD+ + GAKIIE
Sbjct: 159 HNHIIFNSTNLYTGKQFDWKVIPKEKTKSGKAYDVTKNNFEKVSDKIASRYGAKIIEKSP 218
Query: 176 -YSHQRYEVYR-KTNHKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFIT 233
SH +Y ++ ++ +K ++KQRL +L+E S D EDFK+ A L++ DF K T+ +
Sbjct: 219 GNSHLKYTKWQTQSIYKSQIKQRLDYLLEMSSDIEDFKRKAQALNLSFDFSGKWTTYRLL 278
Query: 234 DSTMKQVVRGKQLNRKQP--YTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFG 291
D + RG+ L++ +P Y E E+ ++ ++ + E D++++ +
Sbjct: 279 DEPQMKNTRGRNLDKNRPEKYNLESIIERLETNELSLTVDEVVERYEEKVDVVKQDFDYQ 338
Query: 292 LTINPKQ 298
+T+ Q
Sbjct: 339 VTVEKGQ 345
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 158/343 (46%), Gaps = 20/343 (5%)
Query: 263 KREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKHVSFQFAGVEVKETELDQKNLYD 322
K +I+ +++LL +++D +KA+ L SF F+G LD+ + +
Sbjct: 235 KSQIKQRLDYLLEMSSDIEDFKRKAQALNL---------SFDFSGKWTTYRLLDEPQMKN 285
Query: 323 VEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELPSDEKFWESYQEFKSNRDAVHEF 382
++ KNR PE + + + + + E L DE E Y+E ++
Sbjct: 286 TRG-RNLDKNR-----PEKYNLESIIERLE-TNELSLTVDEVV-ERYEEKVDVVKQDFDY 337
Query: 383 EVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEEDK-VKVFIRETSSYYVYH 441
+V + QI+ + G Y+ V FGI G IF+ ++D E++ +++++ ++ +
Sbjct: 338 QVTVEKGQIDHMTSKGFYLNVDFGIADRGQIFIGGYKVDQLENRDCVLYLKKNETFRLLS 397
Query: 442 KDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEV-ENQSYVT 500
+ A Y+ G L +Q N T+PL+++ + I + + ++ L E V E +
Sbjct: 398 EKEASFTKYLTGHDLAKQLGLYNGTVPLKKEPVISTINQLVDAINFLAEHGVTEGTQFNN 457
Query: 501 IKDELVHELAASELRINELQERMSTLNQVAEYLLASVESKQEMKLN-LSKLNITENISAN 559
++ +L+ L +E ++ + ++ L ++A+ L+ + +N L L + +I
Sbjct: 458 MESQLMSALGEAEEKLYVIDNKIMELTKIAKLLIEKESDHSQAVINELENLGVGPSIKYQ 517
Query: 560 IVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKGDG 602
+ ++L+S ++ + ++E+ V ++ F T L + G
Sbjct: 518 DIHQELQSEKMSRKILKNKFEQTVDEINTFNEIRVTTLEENKG 560
>gi|71910616|ref|YP_282166.1| protein involved in lantibiotic production [Streptococcus pyogenes
MGAS5005]
gi|71853398|gb|AAZ51421.1| protein involved in lantibiotic production [Streptococcus pyogenes
MGAS5005]
Length = 231
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 87/209 (41%), Positives = 146/209 (69%), Gaps = 8/209 (3%)
Query: 389 NQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEED----KVKVFIRETSSYYVYHKDA 444
+QIE+++ + IY+KV F ++Q GLIF+PN QLD+ ++ K KV+IRET+ +++Y+K+A
Sbjct: 3 HQIERLIAEDIYIKVSFSVKQSGLIFIPNYQLDIRKEENHKKYKVYIRETAQFFIYNKEA 62
Query: 445 AEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYVTIKDE 504
+E N YM+G LI Q + ++++IP RR+ T+D +K+KI E+ LIEL+ EN+ Y IKD+
Sbjct: 63 SELNRYMRGHELICQLTNDSKSIPKRRRQTIDTLKKKIEEISLLIELDTENKPYQDIKDD 122
Query: 505 LVHELAASELRINELQERMSTLNQVAEYLL----ASVESKQEMKLNLSKLNITENISANI 560
+V ++A +L I ELQ+ ++ LN+VAE LL +E+++ + + +K+N+T I
Sbjct: 123 IVKDMAQLDLTITELQDHIAHLNKVAEVLLNLNNNDIENRRLARYDYAKMNLTAAIKIEE 182
Query: 561 VEKKLKSLGNQLELERGRYEKMVVRLDKF 589
VEK++++ N+L + YE +V RL+KF
Sbjct: 183 VEKEIETSQNELNISIDEYEYLVRRLEKF 211
>gi|58616103|ref|YP_195793.1| PcfG [Enterococcus faecalis]
gi|30841313|gb|AAP35017.1| putative relaxase [Enterococcus faecalis]
gi|57489118|gb|AAW51325.1| PcfG [Enterococcus faecalis]
Length = 561
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 101/287 (35%), Positives = 149/287 (51%), Gaps = 38/287 (13%)
Query: 1 MVITKHFAIHG------------------------KSYRRKLIKYILNPEKTNNLALVSD 36
MV TKHF IH + L +YI+N +KT LVS
Sbjct: 1 MVYTKHFVIHTFDKLNNACSYIENAEKTEVTNDNPSEHLEHLFQYIVNDDKTYMKKLVSG 60
Query: 37 YGMKNFLDFPSYEEMVQMYHENFISNDTLYDF--RHDRME-------ENQRKIHAHHIIQ 87
+G+ + + YEE + I Y F + +R+ E + AHH+IQ
Sbjct: 61 HGIVDPTN--PYEEFKLTKLQAAIQRKIGYTFDPKSERLLPPTLTELEKGNAVLAHHLIQ 118
Query: 88 SFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSNSDKKLK 147
SFSPED +TPE+I+ IGY TV ELTGGK+ F++ATHVDK+HLHNHII +S + + K +
Sbjct: 119 SFSPEDDLTPEKIHEIGYNTVMELTGGKYEFVIATHVDKEHLHNHIIFSSTNLKTGKAFR 178
Query: 148 WDYKVERNLRMISDRFSKIAGAKIIEN--RYSHQRYEVYRKTN-HKYELKQRLYFLMEHS 204
W +R ISD+ + GAKIIE + +H +Y ++ + +K ++K RL FL+E S
Sbjct: 179 WQKGTKRVFEQISDKIAAKEGAKIIEKSPKQTHTKYTKWQTESIYKQKIKSRLDFLLEQS 238
Query: 205 RDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQLNRKQP 251
DF + A L++ DF +K T+ + D + R + L++ P
Sbjct: 239 SSINDFLEKAEALNLSADFSNKWTTYRLLDEPQIKNTRSRSLSKSDP 285
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 57/270 (21%), Positives = 126/270 (46%), Gaps = 23/270 (8%)
Query: 263 KREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKHVSFQFAGVEVKETELDQKNLYD 322
K++I+S ++FLL + +++D L+KA+ L+ + K +++ LD+ +
Sbjct: 224 KQKIKSRLDFLLEQSSSINDFLEKAEALNLSADFSNKWTTYRL---------LDEPQI-- 272
Query: 323 VEFFQDYFKNRKDWQAPETEDFVQLYQE--EKLSKEKELPSDEKFWESYQEFKSNRDAVH 380
KN + +++ Y++ E+L + K + + E+ + Y+E
Sbjct: 273 --------KNTRSRSLSKSDPTRYNYEKIIERLKENKNVLTVEECVKRYEEKNEQEKNNF 324
Query: 381 EFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLD-MEEDKVKVFIRETSSYYV 439
+++ + Q+ + G Y+ + +G G +FV ++D ++ ++I+ +Y
Sbjct: 325 DYQFTIEPWQLSHKTERGYYINIDYGYGNSGKLFVGGYKVDPLDNGNYNIYIKRNEYFYF 384
Query: 440 YHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYV 499
A K+ Y+ G +LI+Q N PL+R+ + I E ++ ++ L E+E+ +
Sbjct: 385 MSDKDATKSKYLTGASLIKQLRLYNGQTPLKREPVMQTIDELVSAINFLAANEIEDTRQL 444
Query: 500 TIKDE-LVHELAASELRINELQERMSTLNQ 528
+ +E L +E + L E+M L+Q
Sbjct: 445 KLLEEKLEVAFLEAEKTLETLDEKMLELHQ 474
>gi|29377923|ref|NP_817049.1| relaxase [Enterococcus faecalis V583]
gi|29345375|gb|AAO83120.1| relaxase [Enterococcus faecalis V583]
Length = 561
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 99/287 (34%), Positives = 149/287 (51%), Gaps = 38/287 (13%)
Query: 1 MVITKHFAIHG------------------------KSYRRKLIKYILNPEKTNNLALVSD 36
MV TKHF IH + L +YI+N +KT LVS
Sbjct: 1 MVYTKHFVIHTFDKLNNACSYIENAEKTEVTNDNPSEHLEHLFQYIVNDDKTYMKKLVSG 60
Query: 37 YGMKNFLDFPSYEEMVQMYHENFISNDTLYDF--RHDRME-------ENQRKIHAHHIIQ 87
+G+ + + YEE + I Y F + +R+ E + AHH+IQ
Sbjct: 61 HGIVDPTN--PYEEFKLTKLQAAIQRKIGYTFDPKSERLLPPTLTELEKGNAVLAHHLIQ 118
Query: 88 SFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSNSDKKLK 147
SFSPED +TPE+I+ IGY TV ELTGG++ F++ATHVDK+HLHNHII +S + + K +
Sbjct: 119 SFSPEDDLTPEKIHEIGYNTVMELTGGEYEFVIATHVDKEHLHNHIIFSSTNLKTGKAFR 178
Query: 148 WDYKVERNLRMISDRFSKIAGAKIIEN--RYSHQRYEVYRKTN-HKYELKQRLYFLMEHS 204
W ++ ISD+ + GAKIIE + +H +Y ++ + +K ++K RL FL+E S
Sbjct: 179 WQKGTKKVFEQISDKIAAKEGAKIIEKSPKQTHTKYTKWQTESIYKQKIKSRLDFLLEQS 238
Query: 205 RDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQLNRKQP 251
DF + A L++ DF +K T+ + D + R + L++ P
Sbjct: 239 SSINDFLEKAEALNLSADFSNKWTTYRLLDEPQIKNTRSRSLSKSDP 285
Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 57/270 (21%), Positives = 125/270 (46%), Gaps = 23/270 (8%)
Query: 263 KREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKHVSFQFAGVEVKETELDQKNLYD 322
K++I+S ++FLL + +++D L+KA+ L+ + K +++ LD+ +
Sbjct: 224 KQKIKSRLDFLLEQSSSINDFLEKAEALNLSADFSNKWTTYRL---------LDEPQI-- 272
Query: 323 VEFFQDYFKNRKDWQAPETEDFVQLYQE--EKLSKEKELPSDEKFWESYQEFKSNRDAVH 380
KN + +++ Y++ E+L + K + + E+ + Y+E
Sbjct: 273 --------KNTRSRSLSKSDPTRYNYEKIIERLKENKNVLTVEECVKRYEEKNEQEKNNF 324
Query: 381 EFEVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLD-MEEDKVKVFIRETSSYYV 439
+++ + Q+ + G Y+ + +G G +FV ++D + ++I+ +Y
Sbjct: 325 DYQFTIEPWQLSHKTERGYYINIDYGYGNSGKLFVGGYKVDPLANGNYNIYIKRNEYFYF 384
Query: 440 YHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYV 499
A K+ Y+ G +LI+Q N PL+R+ + I E ++ ++ L E+E+ +
Sbjct: 385 MSDKDATKSKYLTGASLIKQLRLYNGQTPLKREPVMQTIDELVSAINFLAANEIEDTRQL 444
Query: 500 TIKDE-LVHELAASELRINELQERMSTLNQ 528
+ +E L +E + L E+M L+Q
Sbjct: 445 KLLEEKLEVAFLEAEKTLETLDEKMLELHQ 474
>gi|108736211|gb|ABG00340.1| MobD [Lactococcus lactis]
Length = 505
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 91/244 (37%), Positives = 140/244 (57%), Gaps = 18/244 (7%)
Query: 9 IHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDF 68
+H +LI Y++NPEKTN+ VS +N LD S + ++ T+ +
Sbjct: 14 VHSSKDLNQLIDYVMNPEKTNDFKYVSG---QNILDIHST-------CDEMLATRTMANA 63
Query: 69 RHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDH 128
++ +N+ I+ +H +QSFSP+DH+TPEQ + IG +T+KE G FI+ATH DKDH
Sbjct: 64 LKNKPRKNE--IYGYHFVQSFSPDDHLTPEQAHEIGCKTMKEYLGNSAEFIIATHTDKDH 121
Query: 129 LHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII---ENRY--SHQRYEV 183
LHNHI++N+ + + K + + L+ ISDR SK G KII E + SH+ Y V
Sbjct: 122 LHNHIVLNATNPLTLNKFQQNKNDLETLKEISDRISKEYGCKIIVRPEQKLGNSHKNYLV 181
Query: 184 YRKTN-HKYELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVR 242
Y N ++ E+K +L FLM HS +EDFK A L++++D K+ T+ + S + +R
Sbjct: 182 YLAQNSYRKEIKNKLEFLMNHSHTWEDFKTKASALNLKVDDTKKYTTYLLEGSEQTKKIR 241
Query: 243 GKQL 246
+ L
Sbjct: 242 DRSL 245
>gi|125624189|ref|YP_001032671.1| MobA [Lactococcus lactis subsp. cremoris MG1363]
gi|1296828|emb|CAA61995.1| mobilisation protein [Lactococcus lactis]
gi|124492997|emb|CAL97960.1| MobA [Lactococcus lactis subsp. cremoris MG1363]
Length = 584
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 100/328 (30%), Positives = 165/328 (50%), Gaps = 49/328 (14%)
Query: 18 LIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRME--- 74
L YI NP+KT + LVS +G+ N D + E + +S T ++F +
Sbjct: 41 LFPYISNPDKTMSKQLVSGHGITNVYD--AANEFIATKKLKALSKGTDFNFDPQTGKVRF 98
Query: 75 -----ENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHL 129
E + HH+IQSFSP+D++TPEQI+ IG +T+ E TGG++ F++ATHVD++H+
Sbjct: 99 NVESLEKNNAVLGHHLIQSFSPDDNLTPEQIHEIGRQTILEFTGGEYEFVIATHVDREHI 158
Query: 130 HN---------------------HIIINSVDSNSDKKLKWD------------YKVER-N 155
HN HII NS + + K+ W Y V + N
Sbjct: 159 HNVRPDRVLSQVVCEQGGTSLLHHIIFNSTNLYTGKQFDWKVIPKEKTKSGKAYDVTKNN 218
Query: 156 LRMISDRFSKIAGAKIIENR--YSHQRYEVYR-KTNHKYELKQRLYFLMEHSRDFEDFKK 212
+SD+ + GAKIIE SH +Y ++ ++ +K ++KQRL +L+E S D EDFK+
Sbjct: 219 FEKVSDKIASRYGAKIIEKSPGNSHLKYTKWQTQSIYKSQIKQRLDYLLEMSSDIEDFKR 278
Query: 213 NAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQLNRKQP--YTEEFFKNYFAKREIESLM 270
A L++ DF K T+ + D + RG+ L++ +P Y E E+ +
Sbjct: 279 KATALNLSFDFSGKWTTYRLLDEPQMKNTRGRNLDKNRPEKYNLESIIERLETNELSLTV 338
Query: 271 EFLLLKVENMDDLLQKAKLFGLTINPKQ 298
+ ++ + E D++++ + +T+ Q
Sbjct: 339 DEVVERYEEKVDVVKQDFDYQVTVEKGQ 366
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 157/343 (45%), Gaps = 20/343 (5%)
Query: 263 KREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQKHVSFQFAGVEVKETELDQKNLYD 322
K +I+ +++LL +++D +KA L SF F+G LD+ + +
Sbjct: 256 KSQIKQRLDYLLEMSSDIEDFKRKATALNL---------SFDFSGKWTTYRLLDEPQMKN 306
Query: 323 VEFFQDYFKNRKDWQAPETEDFVQLYQEEKLSKEKELPSDEKFWESYQEFKSNRDAVHEF 382
++ KNR PE + + + + + E L DE E Y+E ++
Sbjct: 307 TRG-RNLDKNR-----PEKYNLESIIERLE-TNELSLTVDEVV-ERYEEKVDVVKQDFDY 358
Query: 383 EVELSLNQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEEDK-VKVFIRETSSYYVYH 441
+V + QI+ + G Y+ V FGI G IF+ ++D E++ +++++ ++ +
Sbjct: 359 QVTVEKGQIDHMTSKGFYLNVDFGIADRGQIFIGGYKVDQLENRDCVLYLKKNETFRLLS 418
Query: 442 KDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMIKEKIAEVDALIELEV-ENQSYVT 500
+ A Y+ G L +Q N T+PL+++ + I + + ++ L E V E +
Sbjct: 419 EKEASFTKYLTGHDLAKQLGLYNGTVPLKKEPVISTINQLVDAINFLAEHGVTEGTQFNN 478
Query: 501 IKDELVHELAASELRINELQERMSTLNQVAEYLLASVESKQEMKLN-LSKLNITENISAN 559
++ +L+ L +E ++ + ++ L ++A+ L+ + +N L L + +I
Sbjct: 479 MESQLMSALGEAEEKLYVIDNKIMELTKIAKLLIEKESDHSQAVINELENLGVGPSIKYQ 538
Query: 560 IVEKKLKSLGNQLELERGRYEKMVVRLDKFINRLNTGLSKGDG 602
+ ++L+S ++ + ++E+ V ++ F T L + G
Sbjct: 539 DIHQELQSEKMSRKILKNKFEQTVDEINTFNEIRVTTLEENKG 581
>gi|15675068|ref|NP_269242.1| protein involved in lantibiotic (srt) production [Streptococcus
pyogenes M1 GAS]
gi|13622223|gb|AAK33963.1| protein involved in lantibiotic (srt) production [Streptococcus
pyogenes M1 GAS]
Length = 215
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 80/195 (41%), Positives = 134/195 (68%), Gaps = 8/195 (4%)
Query: 403 VKFGIRQEGLIFVPNMQLDMEED----KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIR 458
+ F ++Q GLIF+PN QLD+ ++ K KV+IRET+ +++Y+K+A+E N YM+G LI
Sbjct: 1 MSFSVKQSGLIFIPNYQLDIRKEENHKKYKVYIRETAQFFIYNKEASELNRYMRGHELIC 60
Query: 459 QFSYENQTIPLRRKATVDMIKEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINE 518
Q + ++++IP RR+ T+D +K+KI E+ LIEL+ EN+ Y IKD++V ++A +L I E
Sbjct: 61 QLTNDSKSIPKRRRQTIDTLKKKIEEISLLIELDTENKPYQDIKDDIVKDMAQLDLTITE 120
Query: 519 LQERMSTLNQVAEYLL----ASVESKQEMKLNLSKLNITENISANIVEKKLKSLGNQLEL 574
LQ+ ++ LN+VAE LL +E+++ + + +K+N+T I VEK++++ N+L +
Sbjct: 121 LQDHIAHLNKVAEVLLNLNNNDIENRRLARYDYAKMNLTAAIKIEEVEKEIETSQNELNI 180
Query: 575 ERGRYEKMVVRLDKF 589
YE +V RL+KF
Sbjct: 181 SIDEYEYLVRRLEKF 195
>gi|15903003|ref|NP_358553.1| hypothetical protein spr0959 [Streptococcus pneumoniae R6]
gi|15458570|gb|AAK99763.1| Hypothetical protein [Streptococcus pneumoniae R6]
Length = 198
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 125/182 (68%), Gaps = 10/182 (5%)
Query: 422 MEED---KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMI 478
MEE+ K KV+IRETSSY+VY+K+ + NC++KGRTLIRQ S ++Q +P RR T+ +
Sbjct: 4 MEEENHKKYKVYIRETSSYFVYNKENMDNNCFIKGRTLIRQLSNDSQKLPYRR-PTLKSL 62
Query: 479 KEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVE 538
+EKI+E++ +IEL N+ Y IKDELV E+A ++++ E QE+++TLN++AE L+ +++
Sbjct: 63 QEKISEINLMIELSNTNKQYQEIKDELVLEIAEIDMKLEETQEKIATLNKMAEVLI-NLK 121
Query: 539 SKQEM-----KLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRL 593
S+ E+ K + ++N+TE+I + + + L +L E +YE++ RLD F+ +
Sbjct: 122 SEDEIGRKLAKYDFDQMNMTESIMLDRLNTDILKLQQELSNEINKYEEIARRLDLFVKII 181
Query: 594 NT 595
NT
Sbjct: 182 NT 183
>gi|116515758|ref|YP_816415.1| hypothetical protein SPD_0938 [Streptococcus pneumoniae D39]
gi|116076334|gb|ABJ54054.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
Length = 195
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 125/182 (68%), Gaps = 10/182 (5%)
Query: 422 MEED---KVKVFIRETSSYYVYHKDAAEKNCYMKGRTLIRQFSYENQTIPLRRKATVDMI 478
MEE+ K KV+IRETSSY+VY+K+ + NC++KGRTLIRQ S ++Q +P RR T+ +
Sbjct: 1 MEEENHKKYKVYIRETSSYFVYNKENMDNNCFIKGRTLIRQLSNDSQKLPYRR-PTLKSL 59
Query: 479 KEKIAEVDALIELEVENQSYVTIKDELVHELAASELRINELQERMSTLNQVAEYLLASVE 538
+EKI+E++ +IEL N+ Y IKDELV E+A ++++ E QE+++TLN++AE L+ +++
Sbjct: 60 QEKISEINLMIELSNTNKQYQEIKDELVLEIAEIDMKLEETQEKIATLNKMAEVLI-NLK 118
Query: 539 SKQEM-----KLNLSKLNITENISANIVEKKLKSLGNQLELERGRYEKMVVRLDKFINRL 593
S+ E+ K + ++N+TE+I + + + L +L E +YE++ RLD F+ +
Sbjct: 119 SEDEIGRKLAKYDFDQMNMTESIMLDRLNTDILKLQQELSNEINKYEEIARRLDLFVKII 178
Query: 594 NT 595
NT
Sbjct: 179 NT 180
>gi|15903002|ref|NP_358552.1| Tn5252, relaxase, truncation [Streptococcus pneumoniae R6]
gi|15458569|gb|AAK99762.1| Tn5252, relaxase, truncation [Streptococcus pneumoniae R6]
Length = 185
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 64/161 (39%), Positives = 106/161 (65%), Gaps = 4/161 (2%)
Query: 217 LHVEMDFRHKHATFFITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLK 276
+HV++DF KH+ F +TD M + +RG+QL+++ Y EEFF+ +FAK+EIES +EFLL +
Sbjct: 1 MHVQIDFSQKHSRFMMTDRAMTKPIRGRQLSKRDLYDEEFFRTHFAKQEIESRLEFLLNR 60
Query: 277 VENMDDLLQKAKLFGLTINPKQKHVSFQFA----GVEVKETELDQKNLYDVEFFQDYFKN 332
V ++++L+ KAK LTI+ KQK+V+F + + ++ K LYDV+FFQDYFKN
Sbjct: 61 VNSLEELITKAKELNLTIDLKQKNVTFILKENNQKISLGHQKISDKKLYDVKFFQDYFKN 120
Query: 333 RKDWQAPETEDFVQLYQEEKLSKEKELPSDEKFWESYQEFK 373
++ + E+ + Y + ++K+ S E+ E+++ FK
Sbjct: 121 KEVIASEGLENLQEQYHAFQEERDKDKVSTEEIEEAFKTFK 161
>gi|148998877|ref|ZP_01826313.1| hypothetical protein CGSSp11BS70_00215 [Streptococcus pneumoniae
SP11-BS70]
gi|147755304|gb|EDK62355.1| hypothetical protein CGSSp11BS70_00215 [Streptococcus pneumoniae
SP11-BS70]
Length = 108
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 56/107 (52%), Positives = 82/107 (76%)
Query: 193 LKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQLNRKQPY 252
+KQRLYFL++ S+ F+DF + A LHV++DF KH+ F +TD TM + +RG+QL+++ Y
Sbjct: 1 MKQRLYFLLQQSKSFDDFLEKAKQLHVQIDFSQKHSRFLMTDRTMIKPIRGRQLSKRDLY 60
Query: 253 TEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFGLTINPKQK 299
EEFF+ +FAK+EIES +EFLL +V +++DL+ KAK LTI+ KQK
Sbjct: 61 DEEFFRTHFAKQEIESRLEFLLNRVNSLEDLITKAKELNLTIDLKQK 107
>gi|154499000|ref|ZP_02037378.1| hypothetical protein BACCAP_02992 [Bacteroides capillosus ATCC
29799]
gi|150271840|gb|EDM99066.1| hypothetical protein BACCAP_02992 [Bacteroides capillosus ATCC
29799]
Length = 442
Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 17 KLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRMEEN 76
K I YILNPEKT+ LVS YG + +E ++ + + N
Sbjct: 3 KAIAYILNPEKTDEKLLVSSYGCASETAAREFEWTRKIAEQKGM---------------N 47
Query: 77 QRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIIN 136
+I A H+IQSF + +TPE + IG + E+ GGK+ +++ TH+DKDH+HNH+I N
Sbjct: 48 PVRIIARHVIQSFEIGE-VTPELAHEIGKQFADEILGGKYEYVLTTHIDKDHVHNHLIFN 106
Query: 137 SVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII---ENR-YSHQRY-EVYRKTNHKY 191
+VD + K ++ ++R +SDR K G +I +N+ ++ Y E R T+ K
Sbjct: 107 AVDFVNYHAYKSYKRIYYDMREVSDRLCKENGLSVIPPSQNKGMGYKEYTEAKRGTSWKQ 166
Query: 192 ELKQRLYFLMEHSRDFEDF 210
+LKQ + L+ ++D++DF
Sbjct: 167 KLKQTIDRLVITAKDYDDF 185
>gi|32455483|ref|NP_862609.1| relaxase Mob DEI [Lactococcus lactis subsp. lactis]
gi|9789457|gb|AAF98309.1|AF243383_10 relaxase Mob DEI [Lactococcus lactis subsp. lactis]
Length = 135
Score = 85.5 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 14/124 (11%)
Query: 9 IHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSY-EEMVQMYHENFISNDTLYD 67
+H +LI Y++NPEKTN+ VS +N LD S +EM ++ T+
Sbjct: 14 VHSSKDLNQLIDYVMNPEKTNDFEYVSG---QNILDIHSTCDEM--------LATRTMAI 62
Query: 68 FRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKD 127
++ +N+ I+ +H +QSFSP+DH+TPEQ++ IG +T+KE G FI+ATH DK
Sbjct: 63 ALKNKPRKNE--IYGYHFVQSFSPDDHLTPEQVHEIGCKTMKEYLGNSAEFIIATHTDKP 120
Query: 128 HLHN 131
HLHN
Sbjct: 121 HLHN 124
>gi|94994345|ref|YP_602443.1| Relaxase [Streptococcus pyogenes MGAS10750]
gi|94547853|gb|ABF37899.1| Relaxase [Streptococcus pyogenes MGAS10750]
Length = 70
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 56/67 (83%)
Query: 148 WDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRKTNHKYELKQRLYFLMEHSRDF 207
W+Y +ERNLRMISDR SK+AGAKIIE +S++ Y+ YR T+HK+ELKQRLYFLM+ S+ F
Sbjct: 3 WNYALERNLRMISDRISKMAGAKIIEKHFSYRDYQKYRATSHKFELKQRLYFLMQQSKFF 62
Query: 208 EDFKKNA 214
+DF + A
Sbjct: 63 DDFLEKA 69
>gi|94988547|ref|YP_596648.1| relaxase [Streptococcus pyogenes MGAS9429]
gi|94992370|ref|YP_600469.1| Relaxase [Streptococcus pyogenes MGAS2096]
gi|94542055|gb|ABF32104.1| relaxase [Streptococcus pyogenes MGAS9429]
gi|94545878|gb|ABF35925.1| Relaxase [Streptococcus pyogenes MGAS2096]
Length = 70
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 57/67 (85%)
Query: 148 WDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRKTNHKYELKQRLYFLMEHSRDF 207
W+Y +ERNLRMISDR SK+ GAKIIE RYS++ Y+ YR+++HK+ELKQRLYFLM+ S+ F
Sbjct: 3 WNYALERNLRMISDRISKMTGAKIIEKRYSYRDYQKYRQSSHKFELKQRLYFLMQQSKFF 62
Query: 208 EDFKKNA 214
+DF + A
Sbjct: 63 DDFLEKA 69
>gi|94990423|ref|YP_598523.1| Relaxase [Streptococcus pyogenes MGAS10270]
gi|94543931|gb|ABF33979.1| Relaxase [Streptococcus pyogenes MGAS10270]
Length = 70
Score = 83.6 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 56/67 (83%)
Query: 148 WDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRKTNHKYELKQRLYFLMEHSRDF 207
W+Y +ERNLRMISDR SKIAGAKIIE +S++ Y+ Y+ T+HK+ELKQRLYFLM+ S+ F
Sbjct: 3 WNYALERNLRMISDRISKIAGAKIIEKHFSYRDYQKYKATSHKFELKQRLYFLMQQSKFF 62
Query: 208 EDFKKNA 214
+DF + A
Sbjct: 63 DDFLEKA 69
>gi|154498513|ref|ZP_02036891.1| hypothetical protein BACCAP_02502 [Bacteroides capillosus ATCC
29799]
gi|150272581|gb|EDM99766.1| hypothetical protein BACCAP_02502 [Bacteroides capillosus ATCC
29799]
Length = 449
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 33/218 (15%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
M +TK I KS + I YI NP+KT+ LVS +G
Sbjct: 1 MAVTKTHPI--KSTLKAAIDYICNPDKTDGKLLVSSFGCT-------------------- 38
Query: 61 SNDTLYDFRHDRMEE-NQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFI 119
+ +F R ++ K H+IQ+F P + +TPE+ +RIG E E+ GGK+ F+
Sbjct: 39 AETADIEFAWTRRHAIDKGKNLGRHLIQAFEPGE-VTPEEAHRIGMELAWEILGGKYEFV 97
Query: 120 VATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII------- 172
+ TH+DKDH+HNH+I N+V K + + +R SDR K G +I
Sbjct: 98 LTTHIDKDHVHNHLIFNAVSFTDHKHYHSNKRSYHEIRRASDRLCKEHGLSVIVPGRDKG 157
Query: 173 ENRYSHQRYEVYRKTNHKYELKQRLYFLMEHSRDFEDF 210
++ HQ + T++K +LK + L+ S ED
Sbjct: 158 KSYIEHQAAQ--NGTSYKAKLKAAIDRLIPVSSSLEDL 193
>gi|8100671|gb|AAF72355.1|AF192329_16 Rlx-like protein [Enterococcus faecalis]
Length = 442
Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 65/215 (30%), Positives = 110/215 (51%), Gaps = 27/215 (12%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
M +TK I KS +K + YI NP+KT+ LV+ + SYE
Sbjct: 1 MAVTKIHPI--KSTLKKALDYIENPDKTDGKLLVASFAC-------SYE----------- 40
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ D ++ + + + HH+IQSF+P + TPEQ + IG + +E+ GK+ +++
Sbjct: 41 TADIEFEMLLAQAYQKGNNL-GHHLIQSFAPGE-ATPEQAHEIGKQLAEEVLQGKYPYVL 98
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIE----NRY 176
TH+DK H+HNHII +VD + +K + + +R SDR K G +++
Sbjct: 99 TTHIDKGHVHNHIIFCAVDMVNQRKYISNKQSYAYIRRTSDRLCKENGLSVVKPGQSKGK 158
Query: 177 SHQRYEVYRK-TNHKYELKQRLYFLMEHSRDFEDF 210
S+ ++ RK T+ K +LK + + ++DF+DF
Sbjct: 159 SYAEWDAQRKGTSWKAKLKAAIDAAIPQAKDFDDF 193
>gi|71903442|ref|YP_280245.1| relaxase [Streptococcus pyogenes MGAS6180]
gi|94988549|ref|YP_596650.1| relaxase [Streptococcus pyogenes MGAS9429]
gi|94992372|ref|YP_600471.1| Relaxase [Streptococcus pyogenes MGAS2096]
gi|71802537|gb|AAX71890.1| relaxase [Streptococcus pyogenes MGAS6180]
gi|94542057|gb|ABF32106.1| relaxase [Streptococcus pyogenes MGAS9429]
gi|94545880|gb|ABF35927.1| Relaxase [Streptococcus pyogenes MGAS2096]
Length = 103
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 69/88 (78%), Gaps = 4/88 (4%)
Query: 389 NQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEED----KVKVFIRETSSYYVYHKDA 444
+QIE+++ + IY+KV FG++Q GLIF+PN QLD+ ++ K KV+IRET+ +++Y+K+A
Sbjct: 3 HQIERLIAEDIYIKVSFGVKQSGLIFIPNYQLDIRKEENHKKYKVYIRETAQFFIYNKEA 62
Query: 445 AEKNCYMKGRTLIRQFSYENQTIPLRRK 472
++ N YM+GR LI Q + ++++IP RR+
Sbjct: 63 SKLNRYMRGRELIYQLTNDSKSIPKRRR 90
>gi|71903440|ref|YP_280243.1| relaxase [Streptococcus pyogenes MGAS6180]
gi|71802535|gb|AAX71888.1| relaxase [Streptococcus pyogenes MGAS6180]
Length = 70
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/67 (62%), Positives = 56/67 (83%)
Query: 148 WDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRKTNHKYELKQRLYFLMEHSRDF 207
W+Y +ERNLRMI DR SK+ GAKIIE RYS++ Y+ YR+++HK+ELKQRLYFLM+ S+ F
Sbjct: 3 WNYALERNLRMILDRISKMTGAKIIEKRYSYRDYQKYRQSSHKFELKQRLYFLMQQSKFF 62
Query: 208 EDFKKNA 214
+DF + A
Sbjct: 63 DDFLEKA 69
>gi|154500028|ref|ZP_02038066.1| hypothetical protein BACCAP_03686 [Bacteroides capillosus ATCC
29799]
gi|150271626|gb|EDM98883.1| hypothetical protein BACCAP_03686 [Bacteroides capillosus ATCC
29799]
Length = 469
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 1 MVITKHFAIH---GKSYRR---KLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQM 54
M T+ +H G++ R ++I Y+ NP+KT++ L++ YE ++
Sbjct: 1 MATTRIMPLHIGKGRTESRAISEIIDYVANPQKTDHGRLIT-----------GYECDSRV 49
Query: 55 YHENFISNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGG 114
F+ Y R+ I A+H+ QSF P + I+PE+ NR+G E K T G
Sbjct: 50 ADAEFMLAKRQYIAATGRVRGADDVI-AYHVRQSFCPGE-ISPEEANRLGVEFAKRFTKG 107
Query: 115 KFRFIVATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIEN 174
K FIV TH+DK H+HNHII +SV+ + D+K + + + +R +SD G I+EN
Sbjct: 108 KHAFIVCTHIDKAHVHNHIIWSSVNLDCDRKFRNFWGSTKAVRRLSDTICIENGLSIVEN 167
Query: 175 RYSHQR 180
H +
Sbjct: 168 PKPHGK 173
>gi|154498715|ref|ZP_02037093.1| hypothetical protein BACCAP_02706 [Bacteroides capillosus ATCC
29799]
gi|150272255|gb|EDM99453.1| hypothetical protein BACCAP_02706 [Bacteroides capillosus ATCC
29799]
Length = 468
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 18 LIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRMEENQ 77
+I Y+ NP+KT++ L++ YE ++ F+ Y R+ +
Sbjct: 24 IIDYVANPQKTDHGRLIT-----------GYECDSRVADAEFMLAKRQYIAATGRVR-GE 71
Query: 78 RKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINS 137
+ A+H+ QSF P + ++PE+ NR+G E K T GK FIV TH+DK H+HNHII +S
Sbjct: 72 DDVIAYHVRQSFCPGE-VSPEEANRLGVEFAKRFTKGKHAFIVCTHIDKAHVHNHIIWSS 130
Query: 138 VDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
V+ D+K + + + +R +SD G I+EN H +
Sbjct: 131 VNLECDRKFRNFWGSTKAVRRLSDTICIENGLSIVENPKPHGK 173
>gi|94994347|ref|YP_602445.1| Relaxase [Streptococcus pyogenes MGAS10750]
gi|94547855|gb|ABF37901.1| Relaxase [Streptococcus pyogenes MGAS10750]
Length = 103
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/88 (45%), Positives = 69/88 (78%), Gaps = 4/88 (4%)
Query: 389 NQIEKVVDDGIYVKVKFGIRQEGLIFVPNMQLDMEED----KVKVFIRETSSYYVYHKDA 444
+QIE+++ + IY+KV FG++Q GLIF+PN QLD+ ++ K KV+IRET+ +++Y+K+A
Sbjct: 3 HQIERLIAEDIYIKVSFGVKQSGLIFIPNYQLDIRKEENHKKYKVYIRETAQFFIYNKEA 62
Query: 445 AEKNCYMKGRTLIRQFSYENQTIPLRRK 472
++ N Y++GR LI Q + ++++IP RR+
Sbjct: 63 SKLNRYVRGRELIYQLTNDSKSIPKRRR 90
>gi|154502910|ref|ZP_02039970.1| hypothetical protein RUMGNA_00730 [Ruminococcus gnavus ATCC 29149]
gi|153796449|gb|EDN78869.1| hypothetical protein RUMGNA_00730 [Ruminococcus gnavus ATCC 29149]
Length = 487
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 18 LIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRMEENQ 77
+I Y+ NP+KT+N L++ Y + + F+ Y R+
Sbjct: 41 IIDYVANPKKTDNGRLITGYACDS-----------RTADAEFLLAKRQYIAATGRVRGAD 89
Query: 78 RKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINS 137
I A+H+ QSF P + ITPE+ NR+G E K T G F+V TH+DK H+HNHII +S
Sbjct: 90 DVI-AYHVRQSFRPGE-ITPEEANRLGVEFAKRFTKGNHAFVVCTHIDKSHIHNHIIWSS 147
Query: 138 VDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
V D+K + + + +R +SD G I+EN H +
Sbjct: 148 VSLEYDRKFRNFWGSTKAVRRLSDTICIENGLSIVENPKPHGK 190
>gi|29376805|ref|NP_815959.1| hypothetical protein EF2303 [Enterococcus faecalis V583]
gi|29344270|gb|AAO82029.1| conserved hypothetical protein [Enterococcus faecalis V583]
Length = 470
Score = 79.0 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 57 ENFISNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKF 116
E F + LY R + + I + IIQSF P D ++PE+ ++IG E + TGG+
Sbjct: 52 EEFEISKKLYAQLTGRSQSEKHDIIMYRIIQSFKP-DEVSPEEAHKIGCELAMKFTGGQH 110
Query: 117 RFIVATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIEN-- 174
+F+VATH DK H+H HI NS + N D K + LR ++D + G +IEN
Sbjct: 111 QFVVATHTDKRHIHTHIEFNSTNLNCDAKFQNVKNSAFILRRMNDELCRAHGLSVIENPK 170
Query: 175 ---RYSHQRYEVYRKTNHKYELKQRLYFLMEHSRDFEDF 210
R + +HK +L+Q + L+ +E+F
Sbjct: 171 KKARPQKEMAAAQYGVSHKKQLQQAIDRLLPECNHYEEF 209
>gi|154483071|ref|ZP_02025519.1| hypothetical protein EUBVEN_00769 [Eubacterium ventriosum ATCC
27560]
gi|149736156|gb|EDM52042.1| hypothetical protein EUBVEN_00769 [Eubacterium ventriosum ATCC
27560]
Length = 463
Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 19/219 (8%)
Query: 18 LIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRMEENQ 77
+I Y+ NP+KT D+G + YE ++ F+ + Y R +
Sbjct: 18 IIDYVENPQKT-------DFGKFIY----GYECDTRLADAEFLLSKRQYANLTGR-NQGA 65
Query: 78 RKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINS 137
+ A+H+ Q+F P + +TPE+ N+IG E +LT G F+V THVDK H+HNHIIINS
Sbjct: 66 DDVIAYHLRQAFKPGE-VTPEEANQIGRELALKLTKGNHAFVVCTHVDKHHVHNHIIINS 124
Query: 138 VDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIEN-RYSHQRYEVYRKTNHKYELKQR 196
+ KK + + +R ++D+ G I+EN + S + Y + + +++
Sbjct: 125 TTLDCQKKFRNFWGSTWAIRRMNDKLCLEHGLSIVENPKPSREHYGTWLGNKKQPSFQEQ 184
Query: 197 LYF-----LMEHSRDFEDFKKNAPLLHVEMDFRHKHATF 230
+ L E +DFE+ + +E++ KH F
Sbjct: 185 IRIAIDAALEEKPKDFEELLQKLETAGLEVNRERKHLRF 223
>gi|50954503|ref|YP_061791.1| mobilization protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50950985|gb|AAT88686.1| mobilization protein [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 524
Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 82 AHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSN 141
AHH+IQSF P + I+ + +++G + +++TGG+ +++ATH+DK H+HNHII N+++
Sbjct: 70 AHHVIQSFPPGEAISANRAHQLGVQLAEQVTGGEHEYMIATHLDKGHVHNHIIFNAINFE 129
Query: 142 SDKKLKWDYKVERNLRMISDRFSKIAGAKII-------ENRYSHQRYEVYRKTNHKYELK 194
+ +K D +R +SD K G ++ R Y V + K L+
Sbjct: 130 TGRKFHTDKHTIGKIRDLSDALCKAEGLSVLPPLQKPAAGRSFADIYRVMKGDRGKEYLR 189
Query: 195 QRLYFLMEHSRDFEDFKKNAPLLHVEMDFR-HKHATFFITDSTMKQVVRGKQLNRKQPYT 253
+ + + DF+ +E+ R ++ T + +M + VR +L YT
Sbjct: 190 TEIDKAACRATSWNDFEAILARAGIEISVRGGRNGTVSFREISMSRPVRDFRLG--AAYT 247
Query: 254 EEFFKNYFAK 263
E+ +K
Sbjct: 248 EQSIMTLMSK 257
>gi|116326567|ref|YP_796488.1| Relaxase/Mobilisation nuclease domain [Lactococcus lactis subsp.
cremoris SK11]
gi|116108935|gb|ABJ74057.1| Relaxase/Mobilisation nuclease domain [Lactococcus lactis subsp.
cremoris SK11]
Length = 135
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 12/123 (9%)
Query: 9 IHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDF 68
IH + + + YI+NPEKT LVS ++ PS Y+E ++ + +
Sbjct: 14 IHSQGQLSRALNYIVNPEKTKGGELVSGQN----INVPS-----NAYNEMLLTRE-MAIL 63
Query: 69 RHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDH 128
++ +EN+R H +QSFSPED++TPEQ++ IG +T+K G F++ATH DK+H
Sbjct: 64 AGNQPKENER--FGFHFVQSFSPEDNLTPEQVHEIGLKTMKAYLGESAEFVIATHTDKEH 121
Query: 129 LHN 131
LHN
Sbjct: 122 LHN 124
>gi|90900897|gb|ABE01825.1| Rlx [Bacillus megaterium]
Length = 450
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 80 IHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVD 139
I AHH+IQSF P D + Q N IG + ++L G + V TH DKDH+HNHI+IN+V+
Sbjct: 53 IQAHHVIQSFKP-DEVDSHQANEIGLQLAEKLAKG-YEVAVYTHTDKDHIHNHIVINAVN 110
Query: 140 SNSDKKLKWDYK--VERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRK-------TNHK 190
+K + ++R R SD K G I+E R + RY + + ++ K
Sbjct: 111 YEDGRKFHAHGQETIDR-FREASDELCKENGLSIVEERSADVRYTLAEQSLLEKGESSWK 169
Query: 191 YELKQRLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQL 246
E++ + E + FE+F+++ V+ R K+ T+ +S K VRG +L
Sbjct: 170 DEIRTAIDQAKEQTASFEEFQEHLKEQGVQATLRGKNITYEHLESNKK--VRGMKL 223
>gi|153811411|ref|ZP_01964079.1| hypothetical protein RUMOBE_01803 [Ruminococcus obeum ATCC 29174]
gi|149832538|gb|EDM87622.1| hypothetical protein RUMOBE_01803 [Ruminococcus obeum ATCC 29174]
Length = 203
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 22/172 (12%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
M +TK I KS +K + YI NP+KT+ LVS +G SYE
Sbjct: 1 MAVTKIKPI--KSTLKKALDYIQNPDKTDGKMLVSSFGC-------SYE----------- 40
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ D + F + + + AHH+IQSF P + + E+ + IG + +T G++ +++
Sbjct: 41 TADIEFGFTLSQALDRGNNL-AHHLIQSFEPGE-VDYEKAHEIGKQLADAVTKGQYEYVL 98
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII 172
TH+DK H+HNHII +V+ K + + +R ISDR + G ++
Sbjct: 99 TTHIDKGHIHNHIIFCAVNFVDYHKYVSNKRTYYGIRNISDRLCRENGLSVL 150
>gi|156865252|gb|EDO58683.1| hypothetical protein CLOL250_00715 [Clostridium sp. L2-50]
Length = 471
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 63/206 (30%), Positives = 91/206 (44%), Gaps = 23/206 (11%)
Query: 16 RKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRMEE 75
R + Y +PEKT + +S +YE + F+ Y R ++
Sbjct: 22 RDCLDYGKDPEKTESGKYIS-----------AYECDPATVADEFLLAKASYAAMTGREQK 70
Query: 76 NQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIII 135
+ + + I QSF P + ITP++ NRIGYE T G+ FIV TH DK H+H HI
Sbjct: 71 KENNVLCYQIRQSFYPGE-ITPKEANRIGYELAMRWTKGRHAFIVTTHTDKQHIHCHIYY 129
Query: 136 NSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIEN--RYSHQRYEVY------RKT 187
NS + +K + + LR +SDR G I+EN S +Y Y RK
Sbjct: 130 NSTTLDCTRKFRNFWGSSFALRRLSDRLCLENGLSIVENPKPRSKGKYRNYGEWQKDRKG 189
Query: 188 NHKYELKQRLYF---LMEHSRDFEDF 210
Y+ + RL L E D ++F
Sbjct: 190 PLSYQDRLRLAIDTALAERPADLDEF 215
>gi|125975715|ref|YP_001039625.1| Relaxase/mobilization nuclease domain containing protein
[Clostridium thermocellum ATCC 27405]
gi|125715940|gb|ABN54432.1| Relaxase/mobilization nuclease domain containing protein
[Clostridium thermocellum ATCC 27405]
Length = 463
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 18/209 (8%)
Query: 72 RMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHN 131
R + ++ ++ + IQSF P H TP++I+++G E K G + +ATH+D+DH HN
Sbjct: 62 RQYQKEKGVYFYQYIQSFKPGIHATPQEIHQMGVELAKYFKG--YEVQIATHIDRDHWHN 119
Query: 132 HIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEV-------- 183
H+I+NSV + KL+++ K LR +SD + G ++ ++ +
Sbjct: 120 HLIVNSVSCETGLKLQFNEKNLEQLRTLSDEICAVHGLDTLKPYQKPKQKPMGAGEYRAA 179
Query: 184 YRKTNHKYELKQRLYFLMEHSRDFEDF--KKNAPLLHVEMDFRHKHATFFITDSTMKQVV 241
R ++K++L + M SR E+F + V+ + HK+ T+ + Q
Sbjct: 180 VRGGSYKFKLMNAIDQAMTQSRTREEFIVRMEQMGYQVKWNPHHKYITYTTPEG---QRC 236
Query: 242 RGKQLNRKQPYTEEFFKNYFAK--REIES 268
R +L+ + Y + + YF+ R IE+
Sbjct: 237 RDNKLHETK-YLKTEMEGYFSAKLRRIEA 264
>gi|126697996|ref|YP_001086893.1| putative mobilization protein [Clostridium difficile 630]
gi|115249433|emb|CAJ67248.1| putative mobilization protein [Clostridium difficile 630]
Length = 443
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 83/280 (29%), Positives = 130/280 (46%), Gaps = 44/280 (15%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
M ITK I KS I YI+N +KT+ LVS + + H F+
Sbjct: 1 MAITKIHPI--KSTLNLAIDYIVNGDKTDEQILVSTHKCHQ-----------ETAHTQFL 47
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
R+D + + A H+IQSF P + TPE ++IG E K++ ++ F++
Sbjct: 48 RT------RND--AGTKGNVLARHLIQSFLPGE-TTPEIAHQIGMELCKKILKNEYEFVL 98
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
+TH+DK H+HNHII N+V+ + + + + K + SD+ K +I+ Y +
Sbjct: 99 STHIDKGHIHNHIIFNNVNMVTGRCYQSNKKSYHQICCQSDKLCKENNLSVIDEFY--ES 156
Query: 181 YEVYRKTNHK--YE---------LKQRLYF----LMEHSRDFEDFKKNAPLLHVEMDFRH 225
Y+ KTN K YE K RL F +++ S+D+++F K L E+ +
Sbjct: 157 YKKKYKTNGKSWYENEQAKRGASWKSRLQFDIDRMIKQSKDWDEFLKKMADLGYEIKY-G 215
Query: 226 KHATFFITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKRE 265
KH F + R K + + YTEE K A+RE
Sbjct: 216 KHIAF--KPKNKARFTRTKTIG--EDYTEERLKERIAERE 251
>gi|126699480|ref|YP_001088377.1| putative conjugative transposon mobilization protein [Clostridium
difficile 630]
gi|115250917|emb|CAJ68743.1| putative conjugative transposon mobilization protein [Clostridium
difficile 630]
Length = 443
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 84/280 (30%), Positives = 129/280 (46%), Gaps = 44/280 (15%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
M ITK I KS I YI+N EKT+ LVS + + H F+
Sbjct: 1 MAITKIHPI--KSTLNLAISYIVNGEKTDEQILVSTHKCHQ-----------ETAHTQFL 47
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
R+D + A H+IQSF P + +PE ++IG E K++ ++ F++
Sbjct: 48 RT------RNDVGTNGT--VLARHLIQSFLPGE-ASPEMAHQIGMELCKKILKDEYEFVL 98
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
+TH+DK H+HNHII N+V+ + K + K +R SD+ K +I+ Y +
Sbjct: 99 STHIDKGHIHNHIIFNNVNMVTGKCYHSNKKSYHQIRYQSDKLCKENNLSVIDKFY--ES 156
Query: 181 YEVYRKTNHK--YE---------LKQRLYF----LMEHSRDFEDFKKNAPLLHVEMDFRH 225
Y+ KTN K YE K +L F L++ S+D+E+F K L E+ +
Sbjct: 157 YKRKYKTNGKPWYENEQSKKGTSWKSKLQFDIDRLIKQSKDWEEFLKKMAELGYEIKY-G 215
Query: 226 KHATFFITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKRE 265
KH F D ++ R K + + YTEE K + +
Sbjct: 216 KHIAFKPKDK--QRFTRAKTIG--EDYTEERLKERITENQ 251
>gi|47092029|ref|ZP_00229823.1| Rlx-like protein [Listeria monocytogenes str. 4b H7858]
gi|47019745|gb|EAL10484.1| Rlx-like protein [Listeria monocytogenes str. 4b H7858]
Length = 444
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 11/189 (5%)
Query: 82 AHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSN 141
A+HIIQSF PE+ TPEQ + IG + +++ GK+ +I+ TH+DK+H+HNH+I +
Sbjct: 59 AYHIIQSFKPEE-TTPEQAHEIGKQLLEQHLKGKYEYILTTHIDKEHIHNHVIFCASSFV 117
Query: 142 SDKKLKWDYKVERNLRMISDRFSKIAGAKII---ENR-YSHQRYEVYRKTNH-KYELKQR 196
KK K LR SD +I +N+ SH +++ ++ N K +L+
Sbjct: 118 EHKKYNDCMKTYYQLREASDTLCAEHDLSVIPPNQNKGKSHYEWQMDQQGNSWKAQLRTS 177
Query: 197 LYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQLNRKQPYTEEF 256
+ +++S+ F+DF E+ + KH F K+ R QL YTEE
Sbjct: 178 IDMCIKNSKTFDDFASQMQTQGYEIKY-GKHIAF--RAEKQKRFTRAMQLGGN--YTEEN 232
Query: 257 FKNYFAKRE 265
K A+++
Sbjct: 233 IKLRIAQKD 241
>gi|154498862|ref|ZP_02037240.1| hypothetical protein BACCAP_02854 [Bacteroides capillosus ATCC
29799]
gi|150272097|gb|EDM99314.1| hypothetical protein BACCAP_02854 [Bacteroides capillosus ATCC
29799]
Length = 448
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 84 HIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSNSD 143
I Q+F P + +TPE+ N+IGYET T GK+ F V TH+DK H+HNHI NS +
Sbjct: 54 QIRQAFPPGE-VTPEEANKIGYETAMRWTKGKYHFFVCTHIDKGHIHNHIYYNSTAQDCS 112
Query: 144 KKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR 180
+K +R +SD +I+N H +
Sbjct: 113 RKFHNFIGSSFAVRRLSDWVCIEHELSVIQNPKQHSK 149
>gi|145954370|ref|ZP_01803376.1| hypothetical protein CdifQ_04002150 [Clostridium difficile
QCD-32g58]
Length = 443
Score = 65.9 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 23/199 (11%)
Query: 82 AHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSN 141
A H+IQSF P + +P+ ++IG E K++ ++ F+++TH+DK H+HNHII N+V+
Sbjct: 61 ARHLIQSFLPGE-ASPKMAHQIGLELCKKILKDEYEFVLSTHIDKGHIHNHIIFNNVNMV 119
Query: 142 SDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRKTNHK--YE------- 192
+ K + + K +R SD+ K +I+ Y + Y+ KTN K YE
Sbjct: 120 TGKCYQSNKKSYHKIRYQSDKLCKENNLSVIDEFY--ESYKRKYKTNGKSWYENEQSKRG 177
Query: 193 --LKQRLYF----LMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQL 246
K RL F L++ S+ +E+F K L E+ + KH F D T + R K +
Sbjct: 178 TSWKSRLQFDIDRLIKQSKYWEEFLKKMAELGYEIKY-GKHIAFKPKDKT--RFTRAKTI 234
Query: 247 NRKQPYTEEFFKNYFAKRE 265
+ YTEE K + +
Sbjct: 235 G--EDYTEERLKERITENQ 251
>gi|156867299|gb|EDO60671.1| hypothetical protein CLOLEP_02268 [Clostridium leptum DSM 753]
Length = 442
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 21/162 (12%)
Query: 19 IKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRMEENQR 78
+ Y LN +KT S G LD ++E+M Q+ RM ++
Sbjct: 38 VDYALNKDKTEQDLFCSAIGCT--LD-SAFEDMCQI----------------KRMWHKEK 78
Query: 79 KIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSV 138
+ H++QSF+ + +TPE ++IG E L GG+F+ +++TH++ H+HNH++ NSV
Sbjct: 79 GVQGFHLVQSFAAGE-VTPELAHQIGRELADRLLGGRFQVVISTHLNTGHIHNHLVWNSV 137
Query: 139 DSNSDKKLKWDYK-VERNLRMISDRFSKIAGAKIIENRYSHQ 179
+ KK + + K +R ISD + +I+ S Q
Sbjct: 138 SIQTGKKYRSNEKNYVTGVRRISDELCRKYHLSVIDTEKSEQ 179
>gi|32470525|ref|NP_863197.1| mobilization protein [Staphylococcus epidermidis ATCC 12228]
gi|27316954|gb|AAO06207.1| mobilization protein [Staphylococcus epidermidis ATCC 12228]
Length = 336
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 81 HAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDS 140
H IIQSF P + +TPEQ N++G ++L + V TH D +H+HNHI++NS+D
Sbjct: 54 QGHVIIQSFQPGE-VTPEQCNQLGLALAEKLVPNH-QVAVYTHADTNHVHNHIVLNSIDL 111
Query: 141 NSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRY 181
N+ KK + + R++R +D + G + E + RY
Sbjct: 112 NTGKKFNNNKQALRDVRAFNDEVCRAQGLSVPEKDTARLRY 152
>gi|126698689|ref|YP_001087586.1| putative mobilization protein [Clostridium difficile 630]
gi|115250126|emb|CAJ67947.1| putative mobilization protein [Clostridium difficile 630]
Length = 449
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 22/172 (12%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
M +TK I KS K + YI NP+KT+ LVS +G SYE
Sbjct: 1 MAVTKIKPI--KSTLSKALDYIQNPDKTDGKMLVSSFGC-------SYE----------- 40
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ D + F + E + AHH+IQSF P + + E+ + IG + +T G+ +++
Sbjct: 41 TADIEFGFTLAQAIEKGNNL-AHHLIQSFEPGE-VDYEKAHEIGKQLADAVTKGQHEYVL 98
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII 172
TH+DK H+HNHII +V+ K + + +R +SD+ + G ++
Sbjct: 99 TTHIDKGHIHNHIIFCAVNFVDYHKYNSNKRSYYGIRNMSDKLCRENGLSVV 150
>gi|1333817|emb|CAA26368.1| unnamed protein product [Staphylococcus aureus]
Length = 324
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 10/142 (7%)
Query: 80 IHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVD 139
I AH +IQSF P + +TPEQ N++G E + E + V TH DKDH HNHI+INSVD
Sbjct: 53 IQAHTVIQSFKPGE-VTPEQCNQLGLE-LAEKIAPNHQVAVYTHTDKDHYHNHIVINSVD 110
Query: 140 SNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRK----TNHKYELKQ 195
+ KK + + K ++ +D + G + E + RY K +Y K
Sbjct: 111 LETGKKYQSNKKQRDLVKKENDNICREHGLSVTERGIAKMRYTQAEKGIVFDRDEYSWKD 170
Query: 196 RLYFLME----HSRDFEDFKKN 213
L L+E H+ + E F ++
Sbjct: 171 ELRDLIENAKTHTSNLETFSEH 192
>gi|148381597|ref|YP_001256137.1| possible mobilisation protein [Clostridium botulinum A str. ATCC
3502]
gi|148291081|emb|CAL81545.1| possible mobilisation protein [Clostridium botulinum A str. ATCC
3502]
Length = 256
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 7/109 (6%)
Query: 84 HIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSNSD 143
H IQSF P D++ + N+IG E +++ G F +++TH DK H+HNH ++NSV
Sbjct: 62 HFIQSFDPNDNLDYMKANKIGLEWAEKIFKG-FEVLISTHKDKGHIHNHFVVNSVSFEDG 120
Query: 144 KKLKWDYKVERNLRMISDRFSKIAGAKIIE------NRYSHQRYEVYRK 186
+KL++ K +N + ++DR + G I+ ++H +Y+V K
Sbjct: 121 RKLRYSNKELQNFKNVNDRICEREGLNIVREVSKEITSFNHNKYKVIEK 169
>gi|62868687|ref|NP_052695.2| hypothetical protein pC221_p4 [Staphylococcus aureus]
gi|133111|sp|P03865|RLX2_STAAU Protein rlx
gi|46549|emb|CAA26106.1| unnamed protein product [Staphylococcus aureus]
Length = 315
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 10/142 (7%)
Query: 80 IHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVD 139
I AH +IQSF P + +TPEQ N++G E + E + V TH DKDH HNHI+INSVD
Sbjct: 53 IQAHTVIQSFKPGE-VTPEQCNQLGLE-LAEKIAPNHQVAVYTHTDKDHYHNHIVINSVD 110
Query: 140 SNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRYEVYRK----TNHKYELKQ 195
+ KK + + K ++ +D + G + E + RY K +Y K
Sbjct: 111 LETGKKYQSNKKQRDLVKKENDNICREHGLSVTERGIAKMRYTQAEKGIVFDRDEYSWKD 170
Query: 196 RLYFLME----HSRDFEDFKKN 213
L L+E H+ + E F ++
Sbjct: 171 ELRDLIENAKTHTSNLETFSEH 192
>gi|156869000|gb|EDO62372.1| hypothetical protein CLOLEP_00791 [Clostridium leptum DSM 753]
Length = 459
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 72 RMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHN 131
+M ++ + H++QSF+P + +PE ++IG E ++L GKF+ +++TH++ LHN
Sbjct: 88 KMWHKEKGVQGFHLVQSFAPGE-ASPELAHQIGQEFAQKLLNGKFQVVISTHLNTKCLHN 146
Query: 132 HIIINSVDSNSDKKLKWDYKVE-RNLRMISDRFSKIAGAKIIENRYSHQ 179
H++ NSV + KK + + K +R ISD K II+ S Q
Sbjct: 147 HLVWNSVSLTNGKKYRSNQKSYITRIRRISDELCKKYHLSIIDTEKSQQ 195
>gi|87242901|gb|ABD33947.1| relaxase [uncultured bacterium]
Length = 220
Score = 63.2 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 96 TPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERN 155
TPE+ NR+G E + T G FIV TH+DK H+HNHII NS + +K + R
Sbjct: 1 TPEEANRLGCELARRFTKGNHAFIVCTHIDKAHIHNHIIWNSTTLDCTRKFRDFLGSGRA 60
Query: 156 LRMISDRFSKIAGAKIIEN 174
+R ++D G I+ N
Sbjct: 61 VRRLNDTICIENGYSIVAN 79
>gi|156866024|gb|EDO59396.1| hypothetical protein CLOLEP_03444 [Clostridium leptum DSM 753]
Length = 448
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 22/172 (12%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
M +TK I KS K + YI NP+KT+ LVS +G SYE
Sbjct: 1 MAVTKIKPI--KSTLSKALDYIQNPDKTDGKMLVSSFGC-------SYE----------- 40
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
+ D + F + + + AHH+IQSF P + + E+ + IG + +T G+ +++
Sbjct: 41 TADIEFGFTLAQAIDKGNNL-AHHLIQSFEPGE-VDYEKAHEIGKQLADAVTKGQHEYVL 98
Query: 121 ATHVDKDHLHNHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII 172
TH+DK H+HNHII +V+ K + + +R +SD+ + G ++
Sbjct: 99 TTHIDKGHIHNHIIFCAVNFVDYHKYNSNKRSYYGIRNMSDKLCRENGLSVV 150
>gi|71903441|ref|YP_280244.1| relaxase [Streptococcus pyogenes MGAS6180]
gi|94988548|ref|YP_596649.1| relaxase [Streptococcus pyogenes MGAS9429]
gi|94990424|ref|YP_598524.1| Relaxase [Streptococcus pyogenes MGAS10270]
gi|94992371|ref|YP_600470.1| Relaxase [Streptococcus pyogenes MGAS2096]
gi|71802536|gb|AAX71889.1| relaxase [Streptococcus pyogenes MGAS6180]
gi|94542056|gb|ABF32105.1| relaxase [Streptococcus pyogenes MGAS9429]
gi|94543932|gb|ABF33980.1| Relaxase [Streptococcus pyogenes MGAS10270]
gi|94545879|gb|ABF35926.1| Relaxase [Streptococcus pyogenes MGAS2096]
Length = 70
Score = 62.4 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 51/68 (75%)
Query: 232 ITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFG 291
+TD MK+ +RG+QL+++ Y EEFF+ +FAK EIES +EFLL + ++++LL KAK
Sbjct: 2 MTDRVMKKPIRGRQLSKRDLYDEEFFRTHFAKIEIESRLEFLLNRANSLEELLLKAKEVN 61
Query: 292 LTINPKQK 299
LTI+ KQK
Sbjct: 62 LTIDLKQK 69
>gi|57854749|ref|YP_187558.1| rlx protein, putative [Staphylococcus epidermidis RP62A]
gi|57635982|gb|AAW52771.1| rlx protein, putative [Staphylococcus epidermidis RP62A]
Length = 338
Score = 62.4 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 82 AHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSN 141
H IIQSF P + +TPEQ N++G + E + V TH D DH+HNHI+INS+D
Sbjct: 58 GHVIIQSFKPGE-VTPEQCNQLGL-ALAEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLE 115
Query: 142 SDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRY 181
+ KK + + R+LR +D + G + E + RY
Sbjct: 116 TGKKFNNNKQALRDLRDFNDNVCREHGLSVPEKDTARLRY 155
>gi|150391665|ref|YP_001321714.1| Relaxase/mobilization nuclease family protein [Alkaliphilus
metalliredigens QYMF]
gi|149951527|gb|ABR50055.1| Relaxase/mobilization nuclease family protein [Alkaliphilus
metalliredigens QYMF]
Length = 282
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 76 NQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIII 135
+Q K A H+IQSF P + TP ++IG E ++ GK+ +++ TH+DK H+HNHII
Sbjct: 25 SQCKNLARHLIQSFIPGE-ATPTLAHQIGQELCEKHLKGKYEYVMTTHIDKGHIHNHIIF 83
Query: 136 NSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKII-------ENRYSHQRYEVYRK-- 186
N+V K + K +R SD K G II N+ + Y+ Y++
Sbjct: 84 NNVSFVDGKAYISNKKSYHQIRNESDHICKDNGLSIITSDDLQNNNKTKGKSYKEYQEQK 143
Query: 187 --TNHKYELKQRLYFLMEHSRDFEDF 210
++K +LK + ++ S+D+++F
Sbjct: 144 SGNSYKAKLKYTIDPAIKKSKDWDEF 169
>gi|4105355|gb|AAD02378.1| mobilization protein [Staphylococcus epidermidis]
gi|4105363|gb|AAD02385.1| mobilization protein [Staphylococcus epidermidis]
Length = 336
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 81 HAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDS 140
H IIQSF P + +TPEQ N++G ++L + V TH D DH+HNHI++NS+D
Sbjct: 54 QGHVIIQSFKPGE-VTPEQCNQLGLALAEKLAPNH-QVAVYTHADTDHVHNHIVMNSIDL 111
Query: 141 NSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRY 181
+ KK + + RN+R +D G + + + RY
Sbjct: 112 ETGKKFNNNKQALRNVRNFNDEVCMEHGLSVPDKDTARLRY 152
>gi|42761433|ref|NP_976278.1| Orf337 [Staphylococcus epidermidis]
gi|1762082|gb|AAC18947.1| Orf337 [Staphylococcus epidermidis]
Length = 337
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 81 HAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDS 140
H IIQSF P + +TPEQ N++G ++L + V TH D DH+HNHI+INS+D
Sbjct: 55 QGHVIIQSFKPGE-VTPEQCNQLGLALAEKLVPNH-QVAVYTHNDTDHVHNHIVINSIDL 112
Query: 141 NSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRY 181
+ KK + + RN+R +D G + E + RY
Sbjct: 113 ETGKKFNNNKQALRNVRNFNDEVCMEHGLSVPEKNTARLRY 153
>gi|4105397|gb|AAD02405.1| mobilization protein [Staphylococcus epidermidis]
Length = 337
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 81 HAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDS 140
H IIQSF P + +TPEQ N++G ++L + V TH D DH+HNHI+INS+D
Sbjct: 55 QGHVIIQSFKPGE-VTPEQCNQLGLALAEKLVPNH-QVAVYTHNDTDHVHNHIVINSIDL 112
Query: 141 NSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRY 181
+ KK + + RN+R +D G + E + RY
Sbjct: 113 ETGKKFNNNKQALRNVRNFNDEVCMEHGLSVPEKNTARLRY 153
>gi|68535060|ref|YP_254608.1| mobilization protein [Staphylococcus haemolyticus JCSC1435]
gi|68448421|dbj|BAE06002.1| mobilization protein [Staphylococcus haemolyticus JCSC1435]
Length = 335
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 82 AHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSN 141
H IIQSF P + +TPEQ N++G + E + V TH D DH+HNHI+IN+V+
Sbjct: 55 GHVIIQSFKPGE-VTPEQCNQLGL-ALAEKFATNHQVAVYTHCDTDHIHNHIVINAVNLE 112
Query: 142 SDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRY 181
+ KK + + R+LR +D + G + E + RY
Sbjct: 113 TGKKFNNNKQALRDLRDFNDNVCREHGLSVPEKDTARLRY 152
>gi|32470587|ref|NP_863255.1| RLX protein [Staphylococcus epidermidis ATCC 12228]
gi|27316899|gb|AAO06156.1| RLX protein [Staphylococcus epidermidis ATCC 12228]
Length = 283
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 80 IHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVD 139
+ AH +IQSF P + +TPEQ N++G E +++ + V TH D +H+HNHI+INS+D
Sbjct: 53 VQAHTVIQSFKPGE-VTPEQCNQLGLELAEKIAPNH-QVAVYTHADTNHVHNHIVINSID 110
Query: 140 SNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIEN----RYSHQRYEVYRKTNHKYELKQ 195
+ KK + + K ++ +D + G + E RY+ + K ++ +
Sbjct: 111 LETGKKYQSNKKQREFVKQKNDEVCREHGLSVTERNATMRYTQAEKGLIEKDKSSWKDEI 170
Query: 196 RLYFLMEHSRDFEDFKKNAPLLHVEMDFRHKHATFFITDSTMKQVVRGKQLNRK 249
R + +FE+ ++ L + +D R + T + VRGK L +
Sbjct: 171 RDAIEQSQATNFEELERELNQLDITID-RVTNKTITYRHLKENKKVRGKNLGEQ 223
>gi|71910615|ref|YP_282165.1| relaxase [Streptococcus pyogenes MGAS5005]
gi|71853397|gb|AAZ51420.1| relaxase [Streptococcus pyogenes MGAS5005]
Length = 70
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 51/68 (75%)
Query: 232 ITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFG 291
+TD +K+ +RG+QL+++ Y EEFF+ +FAK EIES +EFLL + ++++LL KAK
Sbjct: 2 MTDRVVKKPIRGRQLSKRDLYDEEFFRTHFAKIEIESRLEFLLNRANSLEELLLKAKEVN 61
Query: 292 LTINPKQK 299
LTI+ KQK
Sbjct: 62 LTIDLKQK 69
>gi|94992630|ref|YP_600729.1| Relaxase [Streptococcus pyogenes MGAS2096]
gi|94546138|gb|ABF36185.1| Relaxase [Streptococcus pyogenes MGAS2096]
Length = 491
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 11/176 (6%)
Query: 19 IKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRME---- 74
I Y NPEKT N ++ ++ D Y + + F D R E
Sbjct: 38 IDYAKNPEKTVN-PKYTEADLQALGDVMKYATNGEKTEKQFFVTGVNCDPATARDEMMIT 96
Query: 75 ----ENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLH 130
+++ +I +H QSF + +TPEQ + +G + + + G +F+ IVATH++ D LH
Sbjct: 97 KGQWQDESEIVCYHGYQSFK-KGEVTPEQAHEVGVKLAERMWGDRFQVIVATHLNTDCLH 155
Query: 131 NHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR-YEVYR 185
NH ++NSV K + K R LR SD S+ +IE ++ Y +Y+
Sbjct: 156 NHFVLNSVSFADGKHYHDNKKNLRLLRKRSDELSREYALSVIEQPSGRKKPYALYQ 211
>gi|153815476|ref|ZP_01968144.1| hypothetical protein RUMTOR_01711 [Ruminococcus torques ATCC 27756]
gi|145847118|gb|EDK24036.1| hypothetical protein RUMTOR_01711 [Ruminococcus torques ATCC 27756]
Length = 470
Score = 60.1 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 11/176 (6%)
Query: 19 IKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRME---- 74
I Y NPEKT N ++ ++ D Y + + F D R E
Sbjct: 17 IDYAKNPEKTVN-PKYTEADLQALGDVMKYATNGEKTEKQFFVTGVNCDPATARDEMMIT 75
Query: 75 ----ENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLH 130
+++ +I +H QSF + +TPEQ + +G + + + G +F+ IVATH++ D LH
Sbjct: 76 KGQWQDESEIVCYHGYQSFK-KGEVTPEQAHEVGVKLAERMWGDRFQVIVATHLNTDCLH 134
Query: 131 NHIIINSVDSNSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQR-YEVYR 185
NH ++NSV K + K R LR SD S+ +IE ++ Y +Y+
Sbjct: 135 NHFVLNSVSFADGKHYHDNKKNLRLLRKRSDELSREYALSVIEQPSGRKKPYALYQ 190
>gi|25045963|gb|AAN71827.1|AF447813_2 MobA-like protein [Staphylococcus aureus]
Length = 335
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 81 HAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDS 140
H IIQSF P D +TPEQ N++G E ++ + V TH D +H+HNHI+INS++
Sbjct: 54 QGHVIIQSFKP-DEVTPEQCNQLGLELAEKF-AAHHQVAVYTHNDTNHVHNHIVINSINL 111
Query: 141 NSDKKLKWDYKVERNLRMISDRFSKIAGAKIIENRYSHQRY 181
+ KK + + R+LR +D+ + + E + RY
Sbjct: 112 ETGKKFNNNKQALRDLRDFNDQVCRNHDLSVPEKDTARLRY 152
>gi|94994346|ref|YP_602444.1| Relaxase [Streptococcus pyogenes MGAS10750]
gi|94547854|gb|ABF37900.1| Relaxase [Streptococcus pyogenes MGAS10750]
Length = 70
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 50/68 (73%)
Query: 232 ITDSTMKQVVRGKQLNRKQPYTEEFFKNYFAKREIESLMEFLLLKVENMDDLLQKAKLFG 291
+TD MK+ +RG+QL+++ Y EEFF+ +FAK EIES ++FL + ++++LL KAK
Sbjct: 2 MTDRVMKKPIRGRQLSKRDLYDEEFFRTHFAKIEIESRLKFLFNRANSLEELLLKAKEVN 61
Query: 292 LTINPKQK 299
LTI+ KQK
Sbjct: 62 LTIDLKQK 69
>gi|153854515|ref|ZP_01995785.1| hypothetical protein DORLON_01780 [Dorea longicatena DSM 13814]
gi|149752824|gb|EDM62755.1| hypothetical protein DORLON_01780 [Dorea longicatena DSM 13814]
Length = 480
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 80 IHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDK-DHLHNHIIINSV 138
I A H QSF+P + P + IG + +EL G +++ ++ATH+DK +HLHNH ++NSV
Sbjct: 109 IVAFHGYQSFAPGE-CNPAMAHEIGKKLAEELWGSQYQVLIATHLDKANHLHNHFVVNSV 167
Query: 139 DSNSDKKLKWDYKVERNLRMISDRFSK 165
K+ + R++RM+SDR K
Sbjct: 168 SFIDGKRYHRTNQDYRDMRMVSDRLCK 194
>gi|67078372|ref|YP_245990.1| relaxase [Bacillus cereus E33L]
gi|66970678|gb|AAY60652.1| rlx protein [Bacillus cereus E33L]
Length = 443
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 25/204 (12%)
Query: 16 RKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFISNDTLYDFRHDRMEE 75
+ +I Y + P KTN + S YE ++ +F S Y+ +++
Sbjct: 16 KAVINYSMQPHKTNEELVTS------------YECSIETIDRDFKSVLVDYNEKNN---- 59
Query: 76 NQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIII 135
+ + + A IIQSF D++TPEQ+++ G E G ++ V TH + D+LHNHII
Sbjct: 60 SDKNMSARMIIQSFDSNDNLTPEQVHQYGVEFADNYLKGNHQYTVITHTETDNLHNHIIF 119
Query: 136 NSVDSNSDKKLKWD-YKVERNLRMISDRFSKIAGAKIIEN-RYSHQRYEVY-------RK 186
N +D N K LR +D+ S+ G IIE R ++Y + +K
Sbjct: 120 NDIDFNKLKMFDSKRVNTLDRLREENDKISEKYGLSIIEEGRKGRKKYLAFTEYVARSKK 179
Query: 187 TNHKYELKQRLYFLMEHSRDFEDF 210
+ K +L++ + + S F++F
Sbjct: 180 KSFKGKLEETIDKNISKSSSFDEF 203
>gi|153852767|ref|ZP_01994204.1| hypothetical protein DORLON_00186 [Dorea longicatena DSM 13814]
gi|149754409|gb|EDM64340.1| hypothetical protein DORLON_00186 [Dorea longicatena DSM 13814]
Length = 431
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 19 IKYILNPEKTN-------NLALVSDYGM-KNFLDFPSYEEMVQMYHENFISNDTLYDFRH 70
I YI N +KT +L DY M ++ + +E+ + E + R+
Sbjct: 16 ITYIRNKDKTTKKGQSAGSLEEAIDYAMNRDKTERSIFEDAIGCVCETAYQDMVATKKRY 75
Query: 71 DRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLH 130
+M+ + H++QSF+ + +TPE +RIG E K L GK+ ++ TH++ +H H
Sbjct: 76 HKMD----GVQGFHLVQSFA-KGEVTPELAHRIGMELAKRLLQGKYEAVITTHLNTEHYH 130
Query: 131 NHIIINSVDSNSDKKLKWDYK-VERNLRMISDRFSKIAGAKIIENR 175
NHI+ NSV KK + + ++R SD G +IE +
Sbjct: 131 NHIVFNSVSMEDGKKYHSNSRSYYEDVRKASDALCLKYGLSVIEPK 176
>gi|94995106|ref|YP_603204.1| Relaxase [Streptococcus pyogenes MGAS10750]
gi|94548614|gb|ABF38660.1| Relaxase [Streptococcus pyogenes MGAS10750]
Length = 123
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 22/138 (15%)
Query: 1 MVITKHFAIHGKSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENFI 60
M ITK I KS I YI N EKT+ LVS F PS H F+
Sbjct: 1 MAITKIHPI--KSTLNLAIDYITNSEKTDEKVLVS-----TFKCHPS------TAHIQFL 47
Query: 61 SNDTLYDFRHDRMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIV 120
R D + + + A H+IQSF P + + P + + IG E K++ + F++
Sbjct: 48 KT------RED--NDTKGTVLARHLIQSFLPGE-VDPIKAHEIGMELCKKILKEDYEFVL 98
Query: 121 ATHVDKDHLHNHIIINSV 138
ATH+D+ H+HNHII S+
Sbjct: 99 ATHIDRGHIHNHIICASI 116
>gi|153810203|ref|ZP_01962871.1| hypothetical protein RUMOBE_00584 [Ruminococcus obeum ATCC 29174]
gi|149833382|gb|EDM88463.1| hypothetical protein RUMOBE_00584 [Ruminococcus obeum ATCC 29174]
Length = 459
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 22/142 (15%)
Query: 1 MVITKHFAIHG-KSYRRKLIKYILNPEKTNNLALVSDYGMKNFLDFPSYEEMVQMYHENF 59
M +TK IHG K+ K I+YI NP+KT+ +S + S E V +
Sbjct: 1 MAVTK---IHGIKTTVDKAIEYICNPDKTDQNLYISSFAC-------SPETAVLDFKYTL 50
Query: 60 ISNDTLYDFRHD-RMEENQRKIHAHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRF 118
D HD R N K A H+IQ+FSP + ++ E+ ++IG E L GK+ +
Sbjct: 51 -------DHTHDCRDPHNTNK--AFHLIQAFSPGE-VSYEEAHQIGKELADRLLEGKYSY 100
Query: 119 IVATHVDKDHLHNHIIINSVDS 140
++ TH DK H+HNH+I S D+
Sbjct: 101 VLTTHTDKGHVHNHLIFCSADN 122
>gi|38639781|ref|NP_943089.1| MobA [Staphylococcus aureus]
gi|133112|sp|P14491|RLX3_STAAU Protein rlx
gi|46639|emb|CAA31314.1| unnamed protein product [Staphylococcus aureus]
gi|33868603|gb|AAQ55244.1| MobA [Staphylococcus aureus]
Length = 330
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 82 AHHIIQSFSPEDHITPEQINRIGYETVKELTGGKFRFIVATHVDKDHLHNHIIINSVDSN 141
H +IQSF P + +TPEQ N++G E +++ + V TH D DH+HNHI+INS+D
Sbjct: 55 GHVVIQSFKPNE-VTPEQCNQLGLELAEKIAPNH-QVAVYTHNDTDHVHNHIVINSIDLE 112
Query: 142 SDKKLKWDYKVERNLRMISDRFSKIAGAKIIEN----RYSHQRYEVYRK 186
+ KK + K ++R +D I E RY+ Y V K
Sbjct: 113 TGKKFNNNKKALHDIRQANDEICVSHNLSIPEEKAKLRYTQAEYSVLNK 161
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,114,997,132
Number of Sequences: 5470121
Number of extensions: 91111495
Number of successful extensions: 328500
Number of sequences better than 1.0e-05: 111
Number of HSP's better than 0.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 328166
Number of HSP's gapped (non-prelim): 172
length of query: 607
length of database: 1,894,087,724
effective HSP length: 139
effective length of query: 468
effective length of database: 1,133,740,905
effective search space: 530590743540
effective search space used: 530590743540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)