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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs41284964          
refSNP ID: rs41284964
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:127/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_002900.2:c.-13C>T
NT_030772.10:g.285183G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss52065251 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs41284964 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss52065251SI_EXO|NT_030772.10_285183fwd/TA/Gaacccattctctcatcatggggacccaggggaggcctggctcctgcacaaaagctccctg03/29/0603/29/06127Genomicunknown
ss81829223HGSV|Cor18555_SNV_20070510.chr10_48010896fwd/TA/Gaacccattctctcatcatggggacccaggggaggcctggctcctgcacaaaagctccctg11/27/0712/01/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs41284964|allelePos=401|totalLen=801|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 CATTACCCTC CAGAACCTCA TGGCGGAGGC CCCTTTGCAG CCAGGCAAGC AGTTCCTCTT
 CTGAGAGGCT GGTGAGTGCT GGGACTTGTG GGGGAGGCTC GGGGGTGCTG GGCTCATAGG
 AGATGACCAG GCGAGGATCG TTCAGGGAGC TCTGCACCCC GGCTGTCAGC ACACTGGCCA
 GCGTCTGCGG GTCTGAGATG CTCAGAATCT CATGGCTCTT GATGGCCTGC TGGATGGCTT
 CCTGCATGCC CAGCAGGTTC TCCGGGAAGC AGTAGTTATC CAAGAGGACC TTGGCCATGT
 CCAGCACCAG GCTTGGCTGG AACAGGTGTG TGGGGCCAGC CAGGCCACAG AGCAGCACGG
 ACATGAGCAG AACCCATTCT CTCATCATGG GGACCCAGGG
 R
 GAGGCCTGGC TCCTGCACAA AAGCTCCCTG GACTGTGTGC AAGGCCGTGG CCCTGCTCTG
 TGCAGCTGCC TTCCGCCCTT GTCCTTCTCA GCTGGTGGAC AGAAGGTCTG GGGCTAAACT
 CCTGAGTTGG GGCAAGGCTT CCAGCTCCAG TAAGCCTTTA ATCCTGTCTA ATTCAAGCAC
 ATCAACCCTG GGTATCGGGG AGGAGTGGCC AGGGTGGTTT GACCCAGAAG GTACATTGCA
 TCTTATCTTG CTGTGTTGTG TCTGCATATC ATAACATTAA TCACTGCCAT TATTTTAGTT
 CCTGCTACAT GCCAGACACT GTGCTCCATC CTTTACAAGC TGACAGTTTC CACCAGAGCC
 TTGCAAAGTC CAGTTATTAA CTTGCAAGTC CTCCTTGGAG

  GeneView back to top
GeneView via analysis of contig annotation: RBP3 retinol binding protein 3, interstitial
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_030772->NM_002900
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_030772->NM_002900->285183reverse1025' UTR

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs41284964 maps exactly once on NCBI human chromosome 10
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
10NW_001837962.110008243143371plusGalt_assembly_8HuRefHuRefview400
10NW_924696.19920644814794plusGalt_assembly_1CeleraCeleraview400
10NT_030772.1028518348010896plusGref_assemblyreferencereferenceview400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_030772.10
dbSNP Blast Analysis
NCBI RefSeq NM (mRNA):GenBank HTGS Finished:GenBank HTGS Draft:
NM_002900.2 AL731561.12 AL732444.18

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .