Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss104300	TSC-CSHL|TSC0137843		fwd/T	A/G	gtaaaaccttaaggatcctgagatttcctg	tatcttggagtattatgtactaattgtgtg	09/06/00	10/10/03	86	Genomic			95 %
ss6109320	SC_JCM|NT_029911.4_212215		rev/B	C/T	cacacaattagtacataatactccaagata	caggaaatctcaggatccttaaggttttac	01/10/03	10/10/03	111	Genomic			unknown
ss11523094	WI_SSAHASNP|chr2.NT_005058.13_483369		rev/B	C/T	cacacaattagtacataatactccaagata	caggaaatctcaggatccttaaggttttac	07/03/03	10/25/06	116	Genomic			unknown
ss23218834	PERLEGEN|afd1322839		rev/B	C/T	cacacaattagtacataatactccaagata	caggaaatctcaggatccttaaggttttac	08/10/04	09/13/04	123	Genomic			unknown
ss44354093	ABI|hCV1020597		fwd/T	A/G	gtaaaaccttaaggatcctgagatttcctg	tatcttggagtattatgtactaattgtgtg	07/18/05	07/18/05	126	Genomic			unknown
ss75183432	ILLUMINA|ILMN_Human_1M_rs751777		fwd/T	A/G	gtaaaaccttaaggatcctgagatttcctg	tatcttggagtattatgtactaattgtgtg	08/28/07	08/29/07	129	Genomic			unknown

Fasta sequence   (Legend)

 GACACAGTGA ATATAAAAAC GTGGAGTAAC AGGAGTCTCC TGAACTTCTG TGGTCAATTT
 CTTTACATTT CTAATGGGTT TGTTTGTTTC TTTGTTTGTG CCAtcgccca ggctggagtg
 caatgatctc cgctcgctgc agcctccacc tcccaggttc aagcaattct cctgcctcag
 cctcccaagt agctagaatt acgggcgtgt gccatcacac ccagctaatt ttttgtattt
 taagtagaga caggatttcg ccacgttggc caggcaatcc acccgcctca gcttctcaaa
 gtgctgggat tacaggtgtg agccaccatg cccagccTTC TAATGGTTCT TGATATTAAT
 TTGGCTACAT TTGCTATCtt tttttttgga cggagtttag ctgtcactca gactggagtg
 caatggcact atctaggctc actgcaacct ccgcctctga ggttcaagca attctcatgc
 ctcagcctcc caagcagctg cgattacagg tgtcaccaca cccagctaat ttttatattt
 ttagtggaga caggctttca ccatgttggc caggatggtc tcaaactcct gacctcaagt
 gatctgcctg ctttggcatc ccaaagtgct gggattacag gcatgagcca ctgtgcctgg
 ccGATAAAGA GTTAAAAGAG ACTTTTAGGT AAAACCTTAA GGATCCTGAG ATTTCCTG
 R
 TATCTTGGAG TATTATGTAC TAATTGTGTG GGTGAACATC TGATTTGCCA GAtgatatgg
 tttggctctg tgtccccacc caaaatctca tgtggaattg taatccccag tgttggcaga
 ggggcctggt gggaggtgac tggatcacgg tggcaactat ccctgttgct ggtcttgtga
 tagagttctc aggagatcta cttgtttata agtgtgttca ctctttccta ctgccacatg
 aagacatgcc tgcttcccct ttgccttctg ccatgattgt aagctttctg aggcctccac
 agccatgcct cctgtacagt ctgcagaact cttgagtcga ctaaacctct tttcttcata
 aattacccgg tctcaggtag ttctttaaag gagtatgaga acagactaat acaACGAATG
 TTGTGCCTAT GTTTTCTCTG GTGTTTCCTT GAGGTTAGCC TGGGTTTCTC TTACTTTTCA
 GGCAGTTGAG TCTCAAGGGA TGGCAACAAG GAGAAACTGA ACAGCAGACT TGGGAAACAA
 CTCGGGCCAC TTGAGTAAGA T

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_022135->NM_001100623 function
reference	NT_022135->NM_017958 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss11523094	HapMap-CEU	European	120	IG	1.000				1.000
	HapMap-HCB	Asian	90	IG	1.000				1.000
	HapMap-JPT	Asian	88	IG	1.000				1.000
	HapMap-YRI	Sub-Saharan African	120	IG	0.700	0.283	0.017	0.655	0.842	0.158
ss23218834	AFD_EUR_PANEL	European	48	IG	1.000				1.000
	AFD_AFR_PANEL	African American	46	IG	0.696	0.304		0.403	0.848	0.152
	AFD_CHN_PANEL	Asian	48	IG	1.000				1.000

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
Validated by: PERLEGEN DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN