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Alignment last updated: 11/20/2008 16:51:48
AL732548.9 Mouse DNA sequence from clone RP24-145P21 on chromosome 4 Contains the Cdc26 gene for cell division cycle 26, the Slc31a1 gene for solute carrier family 31 member 1, the 5' end of a novel gene and a CpG island, complete sequence [htgs_phase3]
Length: 100,074 bp
AL732594.5 Mouse DNA sequence from clone RP24-189G18 on chromosome 4, complete sequence [htgs_phase3]
Length: 145,776 bp
Join evaluation: Alignment count: 1
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Mismatches = 0, Gaps = 0, Length = 2000 Percent identity = 100% Score = 3965 bits (2000), Expect = 0 3 BAC and 4 Fosmid bridging clones. 3 BAC and 4 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AL732548.9 >98075 gatctggcgccctcttctggagtgtctgaagacagctagtgtacttacatataataaata 98134 AL732594.5 >1 ............................................................ 60 AL732548.9 >98135 atttaaaaaaaaaaaaaaaaacaaagttacacttagaccactaaaataaaaagctaaatg 98194 AL732594.5 >61 ............................................................ 120 AL732548.9 >98195 atagtgatctacatgaaagttttgctatagtgtgcattcatagaaattattattgcgtgc 98254 AL732594.5 >121 ............................................................ 180 AL732548.9 >98255 atccagaacgaaacaaaacactacaatgtataggaaacatttacacttctctcaggaggc 98314 AL732594.5 >181 ............................................................ 240 AL732548.9 >98315 ttagcacagcaaggggtgatctaatcaaaacactggcccgtgacatttcaaaactgcttt 98374 AL732594.5 >241 ............................................................ 300 AL732548.9 >98375 attctatcagatactactttctaccagatccttacgtagagaaatggaagtcagctccaa 98434 AL732594.5 >301 ............................................................ 360 AL732548.9 >98435 gggggaaaggaagaaacacttagaaaaacaacaacaacaacaataattccctacttgcga 98494 AL732594.5 >361 ............................................................ 420 AL732548.9 >98495 gggaactttctgaaagcctcaccactagagagcaataatgagtacgagttaaaagcgcgg 98554 AL732594.5 >421 ............................................................ 480 AL732548.9 >98555 ctcggcggctcgcgacctgccacgttactaattctactactacggctccagaacgacctt 98614 AL732594.5 >481 ............................................................ 540 AL732548.9 >98615 ttctcaccagaatgttttttggtttttttcgggcttgtactcttgtccgtgactgagatg 98674 AL732594.5 >541 ............................................................ 600 AL732548.9 >98675 actaaaacagaataagctcgttgcgcgtaactcggcattagtaagtcctcgaaaaggaag 98734 AL732594.5 >601 ............................................................ 660 AL732548.9 >98735 tgctcttctaattggagttgttcggggcagggccttgagtgtggaagtgagtctgttcag 98794 AL732594.5 >661 ............................................................ 720 AL732548.9 >98795 ctcggcaaacgcgcatatttttgtaacccccacaactttcatgtaaggatttttttttta 98854 AL732594.5 >721 ............................................................ 780 AL732548.9 >98855 aaaaaaaccttatctctgatggcctaacattcattggagctactactgctgatatgctct 98914 AL732594.5 >781 ............................................................ 840 AL732548.9 >98915 ttatctggagccttcatggaccctttatttcaaagaacacagacaaagaataggctgtag 98974 AL732594.5 >841 ............................................................ 900 AL732548.9 >98975 acaagtaaacccacaacaaactaggccgcagctcctccaccacatctctattttagcctt 99034 AL732594.5 >901 ............................................................ 960 AL732548.9 >99035 agaaggtcttagagtttaatatcttcttgaagcccaaactgattacgtagccaccgagtt 99094 AL732594.5 >961 ............................................................ 1020 AL732548.9 >99095 acgaggggcccccgaaggacttccgtcgtggacaacagtcctctttcccagctccaaggc 99154 AL732594.5 >1021 ............................................................ 1080 AL732548.9 >99155 tgcagaagtctagggagagatttccatggcaacacaggcctcagcttcgaaatggcggaa 99214 AL732594.5 >1081 ............................................................ 1140 AL732548.9 >99215 ggcctcccgaaggataacagagaccctcgttttgttccagattatggttgcgatccgcaa 99274 AL732594.5 >1141 ............................................................ 1200 AL732548.9 >99275 acctacctcttttcaggcctctgcagttccccagaacctcaactcccaccatgactccat 99334 AL732594.5 >1201 ............................................................ 1260 AL732548.9 >99335 tgctgcgcagcccaaactacacctcccaggctgctctgcgcctctcttcccatgctcctc 99394 AL732594.5 >1261 ............................................................ 1320 AL732548.9 >99395 ttctcccgcgaggttgtgtagctctgtaaggccacgcccctcgactccagccgacctttg 99454 AL732594.5 >1321 ............................................................ 1380 AL732548.9 >99455 gcaactaccattcccaagatacttcgcacgtagtacgtttctgatacgtttccggccagt 99514 AL732594.5 >1381 ............................................................ 1440 AL732548.9 >99515 gacgcacttccactttgctaggcgcgcggttcccggtctgaaaagtagaacgcggatttg 99574 AL732594.5 >1441 ............................................................ 1500 AL732548.9 >99575 gctagggcctcgcgtctccgccgcccggcatggcctcctcacgagcctcctccacggtac 99634 AL732594.5 >1501 ............................................................ 1560 AL732548.9 >99635 ggagctctggatctaagctcaggcctgccctagagaggccgggggttcccgtgggaaagg 99694 AL732594.5 >1561 ............................................................ 1620 AL732548.9 >99695 gccgttaccttacgggtctgggccgaggaggaggaaagctgagggaccctagtgtggacc 99754 AL732594.5 >1621 ............................................................ 1680 AL732548.9 >99755 ttagtagccttttcctgatgtcttcgtgtgctgcagctctctttgcactgctcttactta 99814 AL732594.5 >1681 ............................................................ 1740 AL732548.9 >99815 agtcctgagcagagaccactctttctggctgctccaaaacacggtgctttggaatcgggt 99874 AL732594.5 >1741 ............................................................ 1800 AL732548.9 >99875 tgtgtcctgacttaagctgtccgactcgtacttactatgatgaggcttcccaacttgtaa 99934 AL732594.5 >1801 ............................................................ 1860 AL732548.9 >99935 tcggctctgaaagtatttgaaatgtgtattccagtcacatcgtgacttggtgcacctaga 99994 AL732594.5 >1861 ............................................................ 1920 AL732548.9 >99995 gccaccctgattgtttaggttgtttttagtgtctgcccagcagtgagaagttattttcgt 100054 AL732594.5 >1921 ............................................................ 1980 AL732548.9 >100055 aaaaccggagattgcttttc 100074 AL732594.5 >1981 .................... 2000
Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
A | 100074 | 2001 | + | + | chenhc | Taxid 10090 chrom 4 Reference assembly | 2008-11-20 16:51:48.363 |
Id | Type | Date | Whodid | Comment |
170 | ImportOldDb | 09/02/2005 07:30:00 | f_old_db | |
171 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
168229 | CreateSwitchPt | 11/20/2008 16:51:48 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
C3H-112G18 | AL732594.5 | 99.48% | pos 113587 (F+) | |||
C3H-178O4 | AL732594.5 | 99.56% | pos 97019 (R+) | |||
AL732594.5 | 100% | pos 97212 (R+) | ||||
C3H-204M7 | AL732594.5 | 99.01% | pos 133773 (F+) | |||
C3H-224B18 | AL732594.5 | 99.69% | pos 110581 (R-) | AL732594.5 | 99.83% | pos 46426 (F+) |
C3H-224I17 | AL732594.5 | 99.85% | pos 46422 (F+) | |||
C3H-226J20 | AL732594.5 | 99.34% | pos 131401 (R-) | AL732594.5 | 100% | pos 60447 (F+) |
C3H-40I18 | AL732548.9 | 99.59% | pos 8193 (R+) | AL732594.5 | 99.26% | pos 66488 (F-) |
C3H-47D13 | AL732594.5 | 99.36% | pos 90965 (F-) | |||
C3H-55D2 | AL732594.5 | 99.3% | pos 99425 (F-) | |||
CH29-107O7 | AL732548.9 | 99.34% | pos 88043 (R-) | |||
CH29-114F20 | AL732594.5 | 99.03% | pos 136724 (R-) | AL732548.9 | 100% | pos 49804 (F+) |
CH29-174L2 | AL732594.5 | 99.36% | pos 3095 (F+) | |||
CH29-37M8 | AL732548.9 | 100% | pos 33590 (F-) | |||
CH29-485H12 | AL732594.5 | 100% | pos 99921 (R-) | |||
CH29-4G10 | AL732594.5 | 99.2% | pos 3097 (F+) | |||
CH29-525L11 | AL732594.5 | 99.06% | pos 100019 (R-) | |||
CH29-544P7 | AL732594.5 | 99.86% | pos 27799 (F+) | |||
CH29-558C7 | AL732594.5 | 99.73% | pos 99954 (R-) | AL732548.9 | 99.87% | pos 34155 (F+) |
CH29-561H10 | AL732548.9 | 99.7% | pos 34065 (F-) | |||
CH29-599P18 | AL732548.9 | 99.54% | pos 91370 (R-) | |||
CH29-602A22 | AL732594.5 | 99.68% | pos 14271 (F+) | |||
CH29-9C3 | AL732594.5 | 99.29% | pos 29627 (R-) | |||
RP23-77C20 | AL732548.9 | 99.21% | pos 2346 (R+) | |||
RP24-145C22 | AL732594.5 | 99.6% | pos 69064 (R+) | |||
RP24-147O13 | AL732594.5 | 99.82% | pos 19602 (R-) | |||
RP24-192F17 | AL732548.9 | 99.31% | pos 78257 (F-) | |||
RP24-230O21 | AL732548.9 | 100% | pos 78720 (F-) | |||
RP24-232P23 | AL732594.5 | 100% | pos 62914 (F+) | |||
RP24-235G6 | AL732548.9 | 99% | pos 81069 (R-) | |||
RP24-289G6 | AL732594.5 | 99.85% | pos 17805 (R+) | |||
RP24-304M8 | AL732594.5 | 99.81% | pos 67428 (F+) | |||
RP24-321P2 | AL732548.9 | 99.05% | pos 16380 (R+) | |||
RP24-373K4 | AL732594.5 | 99.05% | pos 123185 (R-) | |||
RP24-373L4 | AL732594.5 | 99.09% | pos 123170 (R-) | AL732594.5 | 99.27% | pos 103370 (F+) |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
WI1-1093K12 | AL732594.5 | 99.76% | pos 133252 (R-) | AL732594.5 | 100% | pos 92934 (F+) |
WI1-121K15 | AL732594.5 | 99.67% | pos 24939 (R-) | |||
WI1-1247N22 | AL732594.5 | 100% | pos 74551 (F+) | |||
WI1-1260G13 | AL732594.5 | 100% | pos 72539 (R-) | AL732594.5 | 99.84% | pos 29618 (F+) |
WI1-1285C19 | AL732594.5 | 100% | pos 78946 (R+) | AL732594.5 | 100% | pos 119426 (F-) |
WI1-1285G21 | AL732594.5 | 100% | pos 78946 (R+) | AL732594.5 | 99.84% | pos 119426 (F-) |
WI1-1504I24 | AL732594.5 | 99.81% | pos 140788 (F+) | |||
WI1-1544O19 | AL732594.5 | 100% | pos 94993 (R+) | AL732594.5 | 99.84% | pos 136784 (F-) |
WI1-1563A1 | AL732594.5 | 100% | pos 94888 (R-) | |||
WI1-1709C10 | AL732594.5 | 99.79% | pos 117692 (R-) | |||
WI1-1735B20 | AL732548.9 | 99.81% | pos 86552 (R-) | AL732548.9 | 100% | pos 40774 (F+) |
WI1-1949P19 | AL732594.5 | 99.34% | pos 118052 (R-) | |||
WI1-195H24 | AL732594.5 | 99.6% | pos 136069 (F+) | |||
WI1-1996O22 | AL732594.5 | 99.19% | pos 106885 (R-) | |||
WI1-2021N13 | AL732594.5 | 100% | pos 54711 (R+) | AL732594.5 | 99.68% | pos 92440 (F-) |
WI1-2079E10 | AL732548.9 | 100% | pos 41290 (R+) | AL732548.9 | 99.56% | pos 81066 (F-) |
WI1-2100O5 | AL732548.9 | 100% | pos 10322 (R+) | AL732548.9 | 99.65% | pos 51332 (F-) |
WI1-210B8 | AL732594.5 | 100% | pos 118257 (F+) | |||
WI1-2122G19 | AL732548.9 | 99.78% | pos 86363 (R+) | AL732594.5 | 100% | pos 32422 (F-) |
WI1-2144K6 | AL732594.5 | 99.77% | pos 27520 (R+) | AL732594.5 | 100% | pos 67971 (F-) |
WI1-215N23 | AL732548.9 | 100% | pos 11129 (R+) | AL732548.9 | 100% | pos 52148 (F-) |
WI1-2200L18 | AL732594.5 | 99.82% | pos 16048 (F+) | |||
WI1-2222P6 | AL732594.5 | 100% | pos 24386 (R+) | AL732594.5 | 99.29% | pos 63334 (F-) |
WI1-2227M10 | AL732548.9 | 99.04% | pos 91259 (R-) | AL732548.9 | 100% | pos 51387 (F+) |
WI1-226L6 | AL732594.5 | 99.02% | pos 11911 (R+) | |||
WI1-2321G20 | AL732594.5 | 100% | pos 15852 (R+) | AL732594.5 | 99.65% | pos 53508 (F-) |
WI1-2348P15 | AL732548.9 | 100% | pos 13352 (F-) | |||
WI1-2473C10 | AL732594.5 | 100% | pos 109388 (R-) | AL732594.5 | 100% | pos 72467 (F+) |
WI1-2497K12 | AL732548.9 | 100% | pos 71169 (R-) | AL732548.9 | 100% | pos 34826 (F+) |
WI1-2518D12 | AL732594.5 | 100% | pos 68830 (R+) | AL732594.5 | 100% | pos 109007 (F-) |
WI1-2669K20 | AL732548.9 | 100% | pos 88981 (R+) | AL732594.5 | 100% | pos 28215 (F-) |
WI1-2729P20 | AL732548.9 | 100% | pos 7420 (R+) | AL732548.9 | 99.85% | pos 45812 (F-) |
WI1-27O23 | AL732548.9 | 99.85% | pos 11129 (R+) | AL732548.9 | 99.85% | pos 52148 (F-) |
WI1-343H24 | AL732594.5 | 100% | pos 1378 (R-) | AL732548.9 | 99.85% | pos 55086 (F+) |
AL732548.9 | 100% | pos 99452 (R-) | ||||
WI1-376N4 | AL732548.9 | 100% | pos 38388 (R+) | AL732548.9 | 100% | pos 77906 (F-) |
WI1-482I1 | AL732594.5 | 99.74% | pos 113537 (R+) | |||
WI1-487E16 | AL732594.5 | 100% | pos 140452 (F-) | |||
WI1-527O9 | AL732594.5 | 100% | pos 139026 (R-) | AL732594.5 | 100% | pos 99612 (F+) |
WI1-56K20 | AL732548.9 | 99.21% | pos 15120 (R-) | |||
WI1-622J11 | AL732594.5 | 99.23% | pos 29933 (R+) | AL732594.5 | 99.15% | pos 72421 (F-) |
WI1-822F10 | AL732548.9 | 100% | pos 15943 (R-) | |||
WI1-846H6 | AL732548.9 | 100% | pos 83921 (R+) | AL732594.5 | 100% | pos 26189 (F-) |
WI1-975N5 | AL732594.5 | 99.76% | pos 115652 (R+) |