Reference SNP(refSNP) Cluster Report: rs26901891

Reference SNP(refSNP) Cluster Report: rs26901891

refSNP ID: rs26901891
Organism:	mouse (Mus musculus)
Molecule Type:	Genomic
Created/Updated in build:	125/128
Map to Genome Build:	37.1

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Strain:	not submitted
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss37109827 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs26901891 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss37109827	PERLEGEN\|NES08406222		fwd/T	A/G	gccctgtataaactctcagagtgctctaca	ataaccctgccacagacagcttttggtctg	04/26/05	07/28/05	125	Genomic			100 %

Fasta sequence (Legend)

 CCATCAGTTC AATTGGGATG ATAATTACAG GGCCTCTGGT CAGGAAGAAA TAAAGTGTAG
 GAAAAAAAAA GCCCTGTATA AACTCTCA
 GAGTGCTCTA CA
 R
 ATAACCCTGC CA
 CAGACAGCTT TTGGTCTGTA TGAAAAGTCA GAGCATACAA GCCTCCTGAG CCCCAGACAC
 GCTCTGCTTC TAACCTTCGT CAAGCAGT

GeneView

GeneView via analysis of contig annotation: Nf2 neurofibromatosis 2

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

Celera

NW_001030444->NM_010898

function

C57BL/6J

NT_039515->NM_010898

function

129/SvEvTac

NT_039532->NM_010898

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


Celera	NW_001030444->NM_010898->NP_035028	1719428	reverse	intron

C57BL/6J	NT_039515->NM_010898->NP_035028	1682636	reverse	intron

129/SvEvTac	NT_039532->NM_010898->NP_035028	100055	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs26901891 maps exactly once on NCBI mouse chromosome 11

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
11	NT_039532.1	100055	4676699	minus	T	alt_strain_1	129/SvEvTac	129/SvEvTac	view	100
11	NT_039515.6	1682636	4682636	plus	A	ref_strain	C57BL/6J	C57BL/6J	view	100
11	NW_001030444.1	1719428	5283048	plus	A	alt_assembly_1	Celera	Celera	view	100

NCBI Resource Links

Submitter-Referenced
GenBank
NC_000077.1

dbSNP Blast Analysis
GenBank HTGS Finished:
AC007550.70 AL606521.24

Population Diversity

	Sample Ascertainment				Genotype Detail
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	G/G
ss37109827	MM_PANEL2		30	IG	14	1

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	-1.000+/-0	15	15	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .