proteins
| 7 proteins |
S | COG3870 | Uncharacterized protein conserved in bacteria | Help | |
|---|---|---|---|---|---|
| 2 from | query genome Bacillus halodurans (Bacillales | Bacilli) | ||||
| BH0043 BH0950 | ||||
98 letters (r) 0
0 469 = ||| 1 BH0950 (98) = 0
11 150 = | 7 CAC0299 (109) = 0
87
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BH0950
(98 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
BH0950 185 2e-47
CAC0299 62 2e-10
BH0043 58 3e-09
SA0441 57 6e-09
BS_yaaQ 55 4e-08
DR1423 53 2e-07
lin2840 49 1e-06
CC1354 33 0.13
CC1968 30 1.3
AGc3047 29 1.8
HI1725 28 3.2
TP0813 28 3.2
SPAC2F3.09 28 4.0
SP1382 28 5.4
RSc0342 27 6.2
MT2987 27 6.8
Rv2919c 27 6.8
XF1843 27 7.3
PA5307 27 7.7
ECU06g0200 27 7.8
# >BH0950
# Length = 98
#
# Score = 185 bits (469), Expect = 2e-47
# Identities = 98/98 (100%), Positives = 98/98 (100%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL 60
# MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL
# Sbjct: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL 60
#
# Query: 61 KEACAVVEERKQRKNKQAHRYTSFLLDVKDTAPLFLTT 98
# KEACAVVEERKQRKNKQAHRYTSFLLDVKDTAPLFLTT
# Sbjct: 61 KEACAVVEERKQRKNKQAHRYTSFLLDVKDTAPLFLTT 98
#
#
# >CAC0299
# Length = 109
#
# Score = 62.4 bits (150), Expect = 2e-10
# Identities = 28/64 (43%), Positives = 44/64 (68%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL 60
# MKL+ICI+ + A E+ L DKG R+T+LA++GGF+K GNTT + G+EE + + +
# Sbjct: 1 MKLVICIVQDDDAGELIDVLTDKGLRVTKLATTGGFLKAGNTTLMIGVEEKAVDGVIETI 60
#
# Query: 61 KEAC 64
# ++ C
# Sbjct: 61 EDVC 64
#
#
# >BH0043
# Length = 109
#
# Score = 58.2 bits (139), Expect = 3e-09
# Identities = 26/64 (40%), Positives = 43/64 (66%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL 60
# MKL+I ++ + ++ + + L YR T+LAS+GGF+K GNTTFL G E++ + + S +
# Sbjct: 1 MKLIIAVVQDKDSNRLSEALVKANYRATKLASTGGFLKAGNTTFLIGTEDEHVEEVMSII 60
#
# Query: 61 KEAC 64
# K+ C
# Sbjct: 61 KDNC 64
#
#
# >SA0441
# Length = 109
#
# Score = 57.4 bits (137), Expect = 6e-09
# Identities = 25/69 (36%), Positives = 44/69 (63%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL 60
# MK++I I+ + + E+ QL +R T+LA++GGF++ GNTTFL G+ +D + + S +
# Sbjct: 1 MKMIIAIVQDQDSQELADQLVKNNFRATKLATTGGFLRAGNTTFLCGVNDDRVDEILSVI 60
#
# Query: 61 KEACAVVEE 69
# + C E+
# Sbjct: 61 NQTCGNREQ 69
#
#
# >BS_yaaQ
# Length = 109
#
# Score = 54.7 bits (130), Expect = 4e-08
# Identities = 24/62 (38%), Positives = 43/62 (68%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL 60
# MKL++ ++ + ++ + K L D +R+T+LA++GGF+K GNTTF+ G+E+ + S +
# Sbjct: 1 MKLIVAVVQDQDSNRLLKTLTDHNFRVTKLATTGGFLKSGNTTFMIGVEDIRVNKALSLI 60
#
# Query: 61 KE 62
# KE
# Sbjct: 61 KE 62
#
#
# >DR1423
# Length = 139
#
# Score = 52.8 bits (125), Expect = 2e-07
# Identities = 22/64 (34%), Positives = 43/64 (66%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL 60
# MKL++ +I + A + + L ++ + T+LAS+GGF+++GNTT + G+++ L LR+ +
# Sbjct: 31 MKLVLAVIQDADAAALMRALSEQHFEATKLASTGGFLREGNTTLMIGVDDQRLDTLRTLI 90
#
# Query: 61 KEAC 64
# + C
# Sbjct: 91 GQTC 94
#
#
# >lin2840
# Length = 109
#
# Score = 49.3 bits (116), Expect = 1e-06
# Identities = 23/69 (33%), Positives = 41/69 (59%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSAL 60
# MKL+ I+ + ++ + L + T+LA++GGF+K GNTTF+ G E++ + + +
# Sbjct: 1 MKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGGFLKAGNTTFIIGTEDERVDDALAII 60
#
# Query: 61 KEACAVVEE 69
# KE C E+
# Sbjct: 61 KENCKAREQ 69
#
#
# >CC1354
# Length = 298
#
# Score = 32.7 bits (73), Expect = 0.13
# Identities = 19/55 (34%), Positives = 27/55 (48%), Gaps = 2/55 (3%)
#
# Query: 8 IDNFYADEVEKQLRDKGYRMTELASSGGFM--KKGNTTFLFGLEEDDLPALRSAL 60
# ID A V +Q + G+R + SGG M + G F+ G E D A+ +AL
# Sbjct: 95 IDVDSARVVARQAAEAGFRFADAPVSGGIMAAEAGTLAFMVGCEASDFAAVEAAL 149
#
#
# >CC1968
# Length = 112
#
# Score = 29.6 bits (65), Expect = 1.3
# Identities = 22/60 (36%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYR-MTELASSGGFMKKGNTTFLFGLEE--DDLPALR 57
# MK + +I F DEV++ L+D G + MT L + G +KG+T G E D LP ++
# Sbjct: 1 MKKIEAVIKPFKLDEVKEALQDMGVQGMTVLEAKGYGRQKGHTELYRGAEYVVDFLPKIK 60
#
#
# >AGc3047
# Length = 238
#
# Score = 29.3 bits (64), Expect = 1.8
# Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
#
# Query: 9 DNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLF--GLEEDDLPALRSALKEACAV 66
# D F D + ++L ++ + A S GFM+ N T + G+ + A A +EA A+
# Sbjct: 46 DQFLPDPLPEELVERLLKAAHSAPSVGFMQPWNFTLVTDGGVRQAAWVAFSRANEEAAAM 105
#
# Query: 67 VEERKQ 72
# E KQ
# Sbjct: 106 FEGEKQ 111
#
#
# >HI1725
# Length = 781
#
# Score = 28.5 bits (62), Expect = 3.2
# Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 9/53 (16%)
#
# Query: 7 IIDNFYADEVEKQLRDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRSA 59
# I DN DEV + L D YR T + ++ G F LE+D + LR A
# Sbjct: 71 IADNLAFDEVIQILLDNEYRQTTMVAAPGD---------FKLEDDSIVVLRRA 114
#
#
# >TP0813
# Length = 428
#
# Score = 28.5 bits (62), Expect = 3.2
# Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 10/48 (20%)
#
# Query: 44 FLFGLEEDDLPALRSALK----------EACAVVEERKQRKNKQAHRY 81
# FLFG+ + + A+R L+ EA A++ E+ +N QAH Y
# Sbjct: 239 FLFGISHEQIQAIRLQLRAQGVAALSRQEAYALIGEKGGGENTQAHAY 286
#
#
# >SPAC2F3.09
# Length = 558
#
# Score = 28.1 bits (61), Expect = 4.0
# Identities = 10/18 (55%), Positives = 14/18 (77%)
#
# Query: 9 DNFYADEVEKQLRDKGYR 26
# D FY +E++K+ RDK YR
# Sbjct: 135 DTFYREELDKKHRDKSYR 152
#
#
# >SP1382
# Length = 484
#
# Score = 27.7 bits (60), Expect = 5.4
# Identities = 13/38 (34%), Positives = 22/38 (57%)
#
# Query: 21 RDKGYRMTELASSGGFMKKGNTTFLFGLEEDDLPALRS 58
# +D GY + +L G F +KG +G +ED L A+++
# Sbjct: 51 KDVGYGVYDLFDLGEFNQKGTVRTKYGFKEDYLQAIQA 88
#
#
# >RSc0342
# Length = 112
#
# Score = 27.3 bits (59), Expect = 6.2
# Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGF-MKKGNTTFLFGLEE--DDLPALR 57
# MKL++ II F DEV + L G + GF +KG+T G E D LP ++
# Sbjct: 1 MKLIMAIIKPFKLDEVREALSQVGVSGITVTEVKGFGRQKGHTELYRGAEYIVDFLPKVK 60
#
#
# >MT2987
# Length = 112
#
# Score = 27.3 bits (59), Expect = 6.8
# Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 3/60 (5%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGF-MKKGNTTFLFGLEE--DDLPALR 57
# MKL+ I+ F D+V+ L D G ++ G+ +KG+T G E D +P +R
# Sbjct: 1 MKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVR 60
#
#
# >Rv2919c
# Length = 112
#
# Score = 27.3 bits (59), Expect = 6.8
# Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 3/60 (5%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGF-MKKGNTTFLFGLEE--DDLPALR 57
# MKL+ I+ F D+V+ L D G ++ G+ +KG+T G E D +P +R
# Sbjct: 1 MKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVR 60
#
#
# >XF1843
# Length = 112
#
# Score = 26.9 bits (58), Expect = 7.3
# Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
#
# Query: 1 MKLLICIIDNFYADEVEKQLRDKGYRMTELASSGGF-MKKGNTTFLFGLEE--DDLPALR 57
# MKL+ II F DEV + L G + GF +KG+T G E D LP ++
# Sbjct: 1 MKLITAIIRPFKLDEVREALSQVGVSGITVTEVKGFGQQKGHTELYRGTEYVIDFLPKIK 60
#
#
# >PA5307
# Length = 855
#
# Score = 26.9 bits (58), Expect = 7.7
# Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
#
# Query: 1 MKLLICIIDNFYADEVEKQL--RDKGYRM--TELASSGGFMKKGNTTFLFGLEEDDLPAL 56
# MKL+ +D+F+ D ++ + + G + L S ++KG L E+D+PAL
# Sbjct: 766 MKLVADALDDFHYDVLQSSVDYHENGKLLLGLRLQGSNPDLEKGRPVNLNVNLEEDIPAL 825
#
# Query: 57 RSALKEACAVVEERKQRKNKQAHR 80
# ++L+ + V E +QR ++ +
# Sbjct: 826 LTSLQLSDRVSETIRQRVQERMQK 849
#
#
# >ECU06g0200
# Length = 742
#
# Score = 26.9 bits (58), Expect = 7.8
# Identities = 22/77 (28%), Positives = 32/77 (40%), Gaps = 14/77 (18%)
#
# Query: 12 YADEVEKQLRDKGYRMTELASSGG--------------FMKKGNTTFLFGLEEDDLPALR 57
# Y EV++ L +KG+ + E+ S G MK N F +P +
# Sbjct: 24 YMREVKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQLHMKSKNVHFKVVYCSRTVPEVE 83
#
# Query: 58 SALKEACAVVEERKQRK 74
# ALKE VVE K+ +
# Sbjct: 84 KALKELDRVVEYIKKHR 100
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.320 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,784,288
Number of Sequences: 192987
Number of extensions: 378844
Number of successful extensions: 1150
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 34
length of query: 98
length of database: 59,019,183
effective HSP length: 74
effective length of query: 24
effective length of database: 44,738,145
effective search space: 1073715480
effective search space used: 1073715480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
S2: 58 (26.9 bits)