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Bos taurus
Canis familiaris
Danio rerio
Homo sapiens
Mus musculus
Rattus novegicus
Sus scrofa

UniSTS:152074 Links
D11S2921
Equus caballus chromosome 1, loci LOC100065715 and LOC100051535
Homo sapiens multiple loci
Pan troglodytes multiple loci

Found by e-PCR in sequences from Bos taurus, Canis familiaris, Danio rerio, Drosophila melanogaster, Gallus gallus, Homo sapiens, Mus musculus, Pan troglodytes, Rattus norvegicus and Sus scrofa.

Primer InformationHelp

Forward primer:CCTGTGGTCCCAGCTACTC
Reverse primer:CAAGGCTGGAGTGCAGTG
PCR product size:103 (bp), Homo sapiens

   Bos taurus
 
Polymorphism info:  

Electronic PCR results Help
Working Draft phase 1 (from GenBank HTGS division) (5 of 6)[Show All Hits]
AC153674.1 10501 .. 10604 (104 bp)  
AC153674.1 43387 .. 43489 (103 bp)  
AC153674.1 113842 .. 113945 (104 bp)  
AC152602.4 240883 .. 240985 (103 bp)  
AC152602.4 242078 .. 243053 (976 bp)  
 
Low-pass Sequence Sampling (from GenBank HTGS division) (2)
AC129953.1 7959 .. 8061 (103 bp)  
AC129953.1 25241 .. 25343 (103 bp)  
 
ESTs (3)
AV602587.1 21 .. 124 (104 bp)  
BF776617.1 215 .. 317 (103 bp)  
DN844558.1 30 .. 132 (103 bp)  
 

   Canis familiaris
Warning! This marker matched more than 2 locations on genome by e-PCR and therefore excluded from annotation.
 
Polymorphism info:  

Electronic PCR results Help
Genomic (4)
BV367665.1 279 .. 533 (255 bp)  
CM000008.2 29230504 .. 29230758 (255 bp)  
CM000008.2 29418455 .. 29418709 (255 bp)  
CM000008.2 29429148 .. 29429402 (255 bp)  
 
Whole Genome Shotgun sequences (5)
AACN010616031.1 252 .. 506 (255 bp)  
AACN010016275.1 1880 .. 2134 (255 bp)  
AAEX02019205.1 58587 .. 58841 (255 bp)  
AAEX02019205.1 69280 .. 69534 (255 bp)  
AAEX02019201.1 133213 .. 133467 (255 bp)  
 

   Danio rerio
 
Polymorphism info:  

Electronic PCR results Help
Working Draft phase 1 (from GenBank HTGS division) (5)
AC136952.8 98873 .. 100051 (1179 bp)  
AC136952.8 99949 .. 100051 (103 bp)  
AC136952.8 99949 .. 100910 (962 bp)  
AC136952.8 117255 .. 117357 (103 bp)  
AC136952.8 129895 .. 129997 (103 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (5 of 12)[Show All Hits]
BX890549.5 98534 .. 98636 (103 bp)  
BX890549.5 130974 .. 131076 (103 bp)  
CR788295.3 878 .. 980 (103 bp)  
CR788295.3 27780 .. 27882 (103 bp)  
CR788295.3 29402 .. 29504 (103 bp)  
 

   Drosophila melanogaster
 
Polymorphism info:  

Electronic PCR results Help
Working Draft phase 1 (from GenBank HTGS division) (3)
AC104603.12 18184 .. 18286 (103 bp)  
AC104603.12 18184 .. 18749 (566 bp)  
AC104603.12 20665 .. 21663 (999 bp)  
 
Whole Genome Shotgun sequences (4)
AABU01002331.1 1341 .. 1443 (103 bp)  
AABU01002336.1 174 .. 276 (103 bp)  
AABU01002337.1 954 .. 1056 (103 bp)  
AABU01002372.1 351 .. 454 (104 bp)  
 

   Equus caballus
Name: D11S2921
Polymorphism info:  

Cross References Help
Gene GeneID:100051535
 Symbol:LOC100051535
 Description:similar to 40S ribosomal protein S29
 Position: 
Gene GeneID:100065715
 Symbol:LOC100065715
 Description:similar to 4-1BB-mediated signaling molecule
 Position: 

Mapping InformationHelp
D11S2921 Sequence Map: Chr 1 Map Viewer
  Position: 183631926-183632180 (bp)
 
D11S2921 Sequence Map: Chr 1 Map Viewer
  Position: 183854129-183854383 (bp)

   Gallus gallus
 
Polymorphism info:  

Electronic PCR results Help
Working Draft phase 1 (from GenBank HTGS division) (1)
AC187119.2 1631 .. 1733 (103 bp)  
 

   Homo sapiens
Warning! This marker matched more than 2 locations on genome by e-PCR and therefore excluded from annotation.
Name: D11S2921
Also known as: GDB:461809
Polymorphism info:  

Cross References Help
Gene GeneID:1
 Symbol:A1BG
 Description:alpha-1-B glycoprotein
 Position:19q13.4
Gene GeneID:100113386
 Symbol:UCKL1OS
 Description:uridine-cytidine kinase 1-like 1 opposite strand
 Position:20q13.33
Gene GeneID:100128342
 Symbol:LOC100128342
 Description:hypothetical protein LOC100128342
 Position:3p24.3
Gene GeneID:100128343
 Symbol:LOC100128343
 Description:hypothetical protein LOC100128343
 Position:14q32.33
Gene GeneID:100128402
 Symbol:LOC100128402
 Description:hypothetical protein LOC100128402
 Position:12p13.31
Gene GeneID:100128564
 Symbol:UNQ353
 Description:GKGM353
 Position:15q22.31
Gene GeneID:100128670
 Symbol:LOC100128670
 Description:hypothetical protein LOC100128670
 Position:9q22.2
Gene GeneID:100128726
 Symbol:LOC100128726
 Description:hypothetical protein LOC100128726
 Position:1q32.1
Gene GeneID:100128942
 Symbol:LOC100128942
 Description:hypothetical protein LOC100128942
 Position:17q25.3
Gene GeneID:100129268
 Symbol:LOC100129268
 Description:hypothetical protein LOC100129268
 Position:1q22
Gene more...
UniGeneHs.101302 Collagen, type XII, alpha 1
 Hs.101480 CDNA FLJ46421 fis, clone THYMU3013197
 Hs.102336 Proline rich 5 (renal)
 Hs.102941 Full length insert cDNA clone ZB81B12
 Hs.103934 FK506 binding protein 9, 63 kDa
 Hs.104119 Renal tumor antigen
 Hs.10458 Chemokine (C-C motif) ligand 16
 Hs.104879 Serpin peptidase inhibitor, clade B (ovalbumin), member 9
 Hs.10499 Amino acid transporter
 Hs.105547 Neural proliferation, differentiation and control, 1
 more...


Electronic PCR results Help
RefSeq mRNA (5 of 201)[Show All Hits]
NM_016546.1 2613 .. 2715 (103 bp)  
NM_018324.1 1449 .. 1551 (103 bp)  
NM_017853.1 1393 .. 1495 (103 bp)  
NM_022777.1 2251 .. 2350 (100 bp)  
NM_024022.1 1792 .. 1894 (103 bp)  
 
mRNA (5 of 201)[Show All Hits]
X02067.1 81 .. 335 (255 bp)  
X04248.1 21 .. 275 (255 bp)  
Z13009.1 3243 .. 3345 (103 bp)  
X64879.1 669 .. 770 (102 bp)  
X01037.1 25 .. 279 (255 bp)  
 
Genomic (5 of 201)[Show All Hits]
X68500.1 431 .. 533 (103 bp)  
X62364.1 38 .. 291 (254 bp)  
X04249.1 81 .. 335 (255 bp)  
X04251.1 82 .. 336 (255 bp)  
X14487.1 241 .. 343 (103 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (5 of 201)[Show All Hits]
AC000005.1 43348 .. 43450 (103 bp)  
AC000005.1 77238 .. 78478 (1241 bp)  
AC000005.1 77891 .. 78478 (588 bp)  
AC000005.1 83108 .. 84015 (908 bp)  
AC000005.1 85191 .. 85293 (103 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (5 of 201)[Show All Hits]
AC000002.1 76482 .. 76584 (103 bp)  
AC002408.1 42535 .. 42637 (103 bp)  
AC002408.1 46219 .. 46320 (102 bp)  
AC002408.1 59912 .. 61417 (1506 bp)  
AC002408.1 59912 .. 60010 (99 bp)  
 
Low-pass Sequence Sampling (from GenBank HTGS division) (5 of 201)[Show All Hits]
AC009151.1 24578 .. 24679 (102 bp)  
AC009114.1 1129 .. 1231 (103 bp)  
AC009114.1 17059 .. 17160 (102 bp)  
AC009029.1 314 .. 378 (65 bp)  
AC008987.1 9969 .. 10071 (103 bp)  
 
ESTs (5 of 201)[Show All Hits]
M77855.1 29 .. 289 (261 bp)  
M77989.1 171 .. 273 (103 bp)  
M78005.1 110 .. 212 (103 bp)  
M78060.1 23 .. 125 (103 bp)  
M85676.1 22 .. 124 (103 bp)  
 
BAC-ends (5 of 67)[Show All Hits]
AG025685.1 173 .. 275 (103 bp)  
AG025752.1 349 .. 451 (103 bp)  
AG025870.1 199 .. 301 (103 bp)  
AG028962.1 167 .. 270 (104 bp)  
AG029028.1 146 .. 248 (103 bp)  
 
Whole Genome Shotgun sequences (5 of 201)[Show All Hits]
AADD01211472.1 349 .. 451 (103 bp)  
AADD01211465.1 1079 .. 1181 (103 bp)  
AADD01211448.1 2407 .. 2509 (103 bp)  
AADD01211401.1 406 .. 508 (103 bp)  
AADD01211335.1 892 .. 994 (103 bp)  
 

   Macaca fascicularis
 
Polymorphism info:  

Cross References Help
UniGeneMfa.102 Macaca fascicularis brain cDNA, clone:QnpA-18618
 Mfa.1029 Macaca fascicularis brain cDNA clone:QmoA-11852, full insert sequence
 Mfa.10348 Macaca fascicularis brain cDNA, clone:QflA-15749
 Mfa.10350 Macaca fascicularis brain cDNA, clone:QflA-15003
 Mfa.10542 Macaca fascicularis brain cDNA clone: QtrA-18578, similar to human hypotheti...
 Mfa.10628 Macaca fascicularis brain cDNA clone: QtrA-17838, similar to human activatio...
 Mfa.10629 Macaca fascicularis brain cDNA clone: QtrA-17835, similar to human trafficki...
 Mfa.10719 Macaca fascicularis brain cDNA clone: QtrA-16763, similar to human O-acyltra...
 Mfa.10798 Macaca fascicularis brain cDNA clone: QtrA-15962, similar to human O-acyltra...
 Mfa.10844 Macaca fascicularis brain cDNA clone: QtrA-15638, similar to human adaptor-r...
 more...


   Macaca mulatta
Warning! This marker matched more than 2 locations on genome by e-PCR and therefore excluded from annotation.
 
Polymorphism info:  

Cross References Help
UniGeneMmu.11071 Transcribed locus
 Mmu.1155 Similar to prenylcysteine oxidase 1
 Mmu.11606 Similar to methionine sulfoxide reductase B3 isoform 2
 Mmu.11643 Similar to B0511.12
 Mmu.11846 CNDP dipeptidase 2 (metallopeptidase M20 family)
 Mmu.1188 P21 (CDKN1A)-activated kinase 2
 Mmu.11946 Similar to sodium channel modifier 1 isoform 1
 Mmu.11957 Amiloride binding protein 1
 Mmu.11967 Aldo-keto reductase family 1, member D1
 Mmu.12052 Heme oxygenase (decycling) 2
 more...


   Medicago truncatula
 
Polymorphism info:  

Cross References Help
UniGeneMtr.20177 Transcribed locus, weakly similar to NP_060312.1 hypothetical protein LOC556...
 Mtr.20455 Transcribed locus


   Mus musculus
Warning! This marker matched more than 2 locations on genome by e-PCR and therefore excluded from annotation.
 
Polymorphism info:  

Cross References Help
UniGeneMm.129731 SCO cytochrome oxidase deficient homolog 1 (yeast)
 Mm.469806 Transcribed locus, moderately similar to XP_001088174.1 similar to EF hand ...


Electronic PCR results Help
Genomic (5 of 141)[Show All Hits]
AC126244.3 141279 .. 141533 (255 bp)  
AC099934.14 67567 .. 67821 (255 bp)  
AC102240.12 62087 .. 62384 (298 bp)  
AC157822.2 121906 .. 122160 (255 bp)  
CH466948.1 32538 .. 32640 (103 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (5 of 201)[Show All Hits]
AC027278.1 31050 .. 31151 (102 bp)  
AC019326.3 25988 .. 26737 (750 bp)  
AC019326.3 110679 .. 112342 (1664 bp)  
AC027410.3 11423 .. 12837 (1415 bp)  
AC027410.3 17754 .. 17856 (103 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (5 of 9)[Show All Hits]
AC020960.2 5475 .. 6199 (725 bp)  
AC020960.2 5475 .. 6755 (1281 bp)  
AC020960.2 22566 .. 22668 (103 bp)  
AC020960.2 26088 .. 26190 (103 bp)  
AC020960.2 29975 .. 30255 (281 bp)  
 
Low-pass Sequence Sampling (from GenBank HTGS division) (5 of 59)[Show All Hits]
AC020833.1 9855 .. 9957 (103 bp)  
AC020833.1 16641 .. 17804 (1164 bp)  
AC020810.1 6016 .. 7601 (1586 bp)  
AC020810.1 14089 .. 14191 (103 bp)  
AC020810.1 17624 .. 19148 (1525 bp)  
 
ESTs (5 of 21)[Show All Hits]
W64166.1 44 .. 146 (103 bp)  
AA863851.1 273 .. 374 (102 bp)  
AI042727.1 44 .. 146 (103 bp)  
AI173110.1 187 .. 289 (103 bp)  
BU962455.1 158 .. 259 (102 bp)  
 
Whole Genome Shotgun sequences (5 of 201)[Show All Hits]
CAAA01000907.1 2313 .. 2567 (255 bp)  
CAAA01075471.1 241 .. 343 (103 bp)  
CAAA01079490.1 16258 .. 16360 (103 bp)  
CAAA01079518.1 20988 .. 21090 (103 bp)  
CAAA01084445.1 6760 .. 8392 (1633 bp)  
 

   Pan troglodytes
Warning! This marker matched more than 2 locations on genome by e-PCR and therefore excluded from annotation.
 
Polymorphism info:  

Cross References Help
Gene GeneID:450320
 Symbol:LOC450320
 Description:similar to thioesterase domain containing 1
 Position: 
Gene GeneID:450367
 Symbol:MASTL
 Description:microtubule associated serine/threonine kinase-like
 Position: 
Gene GeneID:450653
 Symbol:MMS19
 Description:MMS19 nucleotide excision repair homolog (S. cerevisiae)
 Position: 
Gene GeneID:450673
 Symbol:CHUK
 Description:conserved helix-loop-helix ubiquitous kinase
 Position: 
Gene GeneID:450706
 Symbol:NT5C2
 Description:5'-nucleotidase, cytosolic II
 Position: 
Gene GeneID:450766
 Symbol:PDZD8
 Description:PDZ domain containing 8
 Position: 
Gene GeneID:450828
 Symbol:GLRX3
 Description:glutaredoxin 3
 Position: 
Gene GeneID:450900
 Symbol:SYNPO2L
 Description:synaptopodin 2-like
 Position: 
Gene GeneID:450974
 Symbol:RRM1
 Description:ribonucleotide reductase M1
 Position: 
Gene GeneID:450994
 Symbol:ARFIP2
 Description:ADP-ribosylation factor interacting protein 2
 Position: 
Gene more...


Electronic PCR results Help
RefSeq mRNA (5 of 201)[Show All Hits]
XM_001148633.1 3609 .. 3711 (103 bp)  
XM_001157779.1 1242 .. 2492 (1251 bp)  
XM_001165691.1 301 .. 403 (103 bp)  
XM_001161941.1 1937 .. 2039 (103 bp)  
XM_001161787.1 1667 .. 1769 (103 bp)  
 
Genomic (5 of 201)[Show All Hits]
M38057.1 5098 .. 5189 (92 bp)  
S43650.1 450 .. 552 (103 bp)  
U38668.1 355 .. 457 (103 bp)  
AF077058.1 242 .. 344 (103 bp)  
AC006582.13 8042 .. 8144 (103 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (5 of 201)[Show All Hits]
AC087736.1 14340 .. 14442 (103 bp)  
AC087736.1 47169 .. 47271 (103 bp)  
AC087736.1 54903 .. 55005 (103 bp)  
AC087736.1 152552 .. 154205 (1654 bp)  
AC087736.1 152552 .. 152654 (103 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (5 of 201)[Show All Hits]
AC091392.1 10571 .. 11694 (1124 bp)  
AC091392.1 17662 .. 19053 (1392 bp)  
AC091392.1 18951 .. 19053 (103 bp)  
AC091392.1 20116 .. 20217 (102 bp)  
AC091392.1 20808 .. 20910 (103 bp)  
 
ESTs (5 of 8)[Show All Hits]
CB296143.1 142 .. 244 (103 bp)  
CB296692.1 147 .. 249 (103 bp)  
CB296696.1 243 .. 346 (104 bp)  
CB296782.1 9 .. 111 (103 bp)  
CB296796.1 60 .. 162 (103 bp)  
 
BAC-ends (5 of 201)[Show All Hits]
AG029211.1 139 .. 241 (103 bp)  
AG029338.1 370 .. 472 (103 bp)  
AG029388.1 526 .. 628 (103 bp)  
AG029581.1 169 .. 271 (103 bp)  
AG029647.1 342 .. 444 (103 bp)  
 
Whole Genome Shotgun sequences (5 of 201)[Show All Hits]
AADA01361857.1 22 .. 124 (103 bp)  
AADA01361853.1 227 .. 329 (103 bp)  
AADA01361825.1 398 .. 500 (103 bp)  
AADA01361824.1 46 .. 148 (103 bp)  
AADA01361818.1 600 .. 702 (103 bp)  
 

   Rattus norvegicus
 
Polymorphism info:  

Electronic PCR results Help
Genomic (5 of 13)[Show All Hits]
AC091616.2 101029 .. 101283 (255 bp)  
CM000083.1 22851219 .. 22851473 (255 bp)  
CM000081.1 59473932 .. 59474187 (256 bp)  
CM000077.1 91117304 .. 91117558 (255 bp)  
CM000077.1 91323132 .. 91323386 (255 bp)  
 
Working Draft phase 1 (from GenBank HTGS division) (5 of 21)[Show All Hits]
AC107185.5 329709 .. 329963 (255 bp)  
AC125841.3 86635 .. 86889 (255 bp)  
AC119696.7 90850 .. 91105 (256 bp)  
AC144418.1 16680 .. 16782 (103 bp)  
AC139924.4 30235 .. 30337 (103 bp)  
 
Working Draft phase 2 (from GenBank HTGS division) (1)
AC126994.3 34735 .. 34989 (255 bp)  
 
ESTs (4)
AA923995.1 46 .. 300 (255 bp)  
BF403614.1 41 .. 143 (103 bp)  
BF403911.1 41 .. 143 (103 bp)  
BQ529275.1 219 .. 321 (103 bp)  
 
Whole Genome Shotgun sequences (5 of 26)[Show All Hits]
AABR03083825.1 1243 .. 1497 (255 bp)  
AABR03073342.1 29630 .. 29885 (256 bp)  
AABR03051278.1 8655 .. 8909 (255 bp)  
AABR03049766.1 29017 .. 29271 (255 bp)  
AAHX01420190.1 338 .. 440 (103 bp)  
 

   Sus scrofa
 
Polymorphism info:  

Cross References Help
UniGeneSsc.23735 Transcribed locus, moderately similar to NP_001013702.1 hypothetical protein...


Electronic PCR results Help
ESTs (3)
BP152045.1 433 .. 535 (103 bp)  
BP459377.1 28 .. 282 (255 bp)  
BP461730.1 414 .. 516 (103 bp)  
 

 

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