Reference SNP(refSNP) Cluster Report: rs31304307

Reference SNP(refSNP) Cluster Report: rs31304307

refSNP ID: rs31304307
Organism:	mouse (Mus musculus)
Molecule Type:	Genomic
Created/Updated in build:	125/128
Map to Genome Build:	37.1

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Strain:	not submitted
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss46018542 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs31304307 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss46018542	ABI\|mCV24575675		fwd/T	A/G	gatattctttaatatcctttccagctccta	catctacgtttccaagaaatctgattctgg	07/20/05	12/22/05	125	Genomic			unknown
ss58964679	ENSEMBL\|NT_039424.5_912836		fwd/T	A/G	gatattctttaatatcctttccagctccta	catctacgtttccaagaaatctgattctgg	06/12/06	06/12/06	127	Genomic			unknown

Fasta sequence (Legend)

 GACTAGGTCA TCAAAGTGTT CTGTTTAACC AATGTGATCA TTCTCAGAGT GGCTTGATCA
 GTGTGAGCAG GCCAATACAG CCTCAAAGAA CAGAGTCAGT GTGTGCAATG GAAAGATCCT
 TGGATTAGAA ATCAGGAGAC CTGGCTCCTT TCCGGGCATC AGGAGACCTG GCTTCAGCTT
 CTGGCCGTCC CACTGGTCGG AAACATGCCC AAAGTCCCTC AGCTATCTGT TCTGGGCTTG
 GTGTCCTCAA CCATAACTGA AAGAGTTGGA GATATTCTTT AATATCCTTT CCAGCTCCTA
 R
 CATCTACGTT TCCAAGAAAT CTGATTCTGG AGCGTTTGTT TGGGCAGTTT AGGTCAACAA
 AGGACATATC TAAACAGAGT AAATATATAA TGGATAATGT TTTTAAAAGA AGCAGATTAT
 CTTGTTAAAT ATTTATTAGT AGTTGTAGTG AATGAAATTG ATAGTTTATG TAATTTTCCA
 GGCAAGGGTT TCTAAAGGGA TTAAAAAATG TAGTTATTGA GTATTATCTT TCAGTGGACT
 AGAAGTCACC CCAGGTAGAC AGAGGAAACC TCAAGGAAAC ACTATTATTA TTATTATAAT

GeneView

GeneView via analysis of contig annotation: Gas2 growth arrest specific 2

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

Celera

NW_001030857->NM_008087

function

C57BL/6J

NT_039424->NM_008087

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


Celera	NW_001030857->NM_008087->NP_032113	853228	forward	intron

C57BL/6J	NT_039424->NM_008087->NP_032113	12789139	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs31304307 maps exactly once on NCBI mouse chromosome 7

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
7	NW_001030857.1	853228	49263066	plus	A	alt_assembly_1	Celera	Celera	view	300
7	NT_039424.7	12789139	59145333	plus	A	ref_strain	C57BL/6J	C57BL/6J	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_039424.5

dbSNP Blast Analysis
GenBank HTGS Finished:
AC113312.7 AC158345.8

Population Diversity

	Sample Ascertainment				Genotype Detail
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	G/G
ss46018542	CRAMUS_MOUSE		6	IG	2	1

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	-1.000+/-0	3	3	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .