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Library:5324 (dbEST ID)
Wellcome CRC pSK egg
Library Description
| Organism: | Xenopus laevis |
| Tissue: | egg |
| Vector: | pBluescript SK- |
| Vector type: | plasmid (ampicillin resistant) |
| Cloning site 1: | NotI |
| Cloning site 2: | EcoRI |
| Lab host: | DH10B (phage-resistant) |
cDNAs were oligo-dT primed and directionally cloned. Library was constructed by N. Garrett, P. LeMaire, A.M. Zorn, and J.B. Gurdon (Wellcome/CRC Institute). Note: This is a Xenopus Gene Collection (XGC) library.
Source: Robert Strausberg, Ph.D.
Gene Content Analysis
8,766 ESTs from this library were grouped into 3,380 UniGene entries (putative genes) [UniGene build #86, 01-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 7 | 799 |  |
Xl.2565 | Transcribed locus, strongly similar to NP_033474.1 tubulin, alpha 1C [Mus musculus]. |
| 7 | 799 | |
Xl.25634 | Hypothetical LOC496333, mRNA (cDNA clone IMAGE:6867262). |
| 7 | 799 | |
Xl.2546 | Proteasome subunit XC3 (Psma2), mRNA. |
| 7 | 799 | |
Xl.25264 | Transcribed locus, weakly similar to XP_693095.2 PREDICTED: similar to predicted protein, partial [Danio rerio]. |
| 7 | 799 | |
Xl.23923 | KIAA1715 (kiaa1715), mRNA. |
| 7 | 799 | |
Xl.22528 | Hypothetical LOC496335, mRNA (cDNA clone IMAGE:6326704). |
| 7 | 799 | |
Xl.22010 | Hypothetical protein LOC443721, mRNA (cDNA clone MGC:196533 IMAGE:9041440). |
| 7 | 799 | |
Xl.20742 | Similar to glyoxylate reductase/hydroxypyruvate reductase (LOC398508), mRNA. |
| 7 | 799 | |
Xl.15108 | CDNA clone IMAGE:6868125. |
| 7 | 799 | |
Xl.1244 | Maternal B9.10 protein (b9-a), mRNA. |
| 7 | 799 | |
Xl.124 | P46Eg265 (LOC397925), mRNA. |
| 7 | 799 | |
Xl.10633 | Hypothetical protein MGC115729 (MGC115729), mRNA. |
| 6 | 684 | |
Xl.8860 | Tumor protein, translationally-controlled 1 (tpt1), mRNA. |
| 6 | 684 | |
Xl.84951 | CDNA clone IMAGE:6318797. |
| 6 | 684 | |
Xl.84935 | Coco (coco), mRNA. |
| 6 | 684 | |
Xl.84699 | LysM and putative peptidoglycan-binding domain-containing protein 2, mRNA (cDNA clone MGC:160167 IMAGE:8463533). |
| 6 | 684 | |
Xl.83924 | Cyclin G1 (ccng1), mRNA. |
| 6 | 684 | |
Xl.8119 | Hypothetical protein MGC85128 (MGC85128), mRNA. |
| 6 | 684 | |
Xl.7905 | Osteoclast stimulating factor 1 (sh3d3), mRNA. |
| 6 | 684 | |
Xl.78270 | Transcribed locus, moderately similar to NP_001090750.1 putative CMP-sialic acid synthetase [Xenopus tropicalis]. |
| 6 | 684 | |
Xl.78216 | Transcribed locus, strongly similar to NP_001089556.1 hypothetical protein LOC734612 [Xenopus laevis]. |
| 6 | 684 | |
Xl.77885 | Hypothetical LOC495075 (LOC495075), mRNA. |
| 6 | 684 | |
Xl.77030 | Transcribed locus, strongly similar to NP_001080314.1 kinesin family member 2C [Xenopus laevis]. |
| 6 | 684 | |
Xl.76864 | Transcribed locus, strongly similar to NP_001080511.1 cathepsin C [Xenopus laevis]. |
| 6 | 684 | |
Xl.76827 | LSM2 homolog, U6 small nuclear RNA associated (lsm2), mRNA. |
| 6 | 684 | |
Xl.76541 | Transcribed locus, strongly similar to NP_082640.1 poly-U binding splicing factor 60 isoform a [Mus musculus]. |
| 6 | 684 | |
Xl.76425 | Transcribed locus, strongly similar to NP_001081603.1 U1 70K [Xenopus laevis]. |
| 6 | 684 | |
Xl.7590 | XDCoH (LOC397951), mRNA. |
| 6 | 684 | |
Xl.75328 | Hypothetical protein MGC81359 (MGC81359), mRNA. |
| 6 | 684 | |
Xl.7291 | Heat-stable protein p37 (MGC115500), mRNA. |
| 6 | 684 | |
Xl.725 | Hypothetical protein LOC100036774 (LOC100036774), mRNA. |
| 6 | 684 | |
Xl.7156 | Transcribed locus, weakly similar to XP_420394.2 PREDICTED: similar to flocculin-like protein [Gallus gallus]. |
| 6 | 684 | |
Xl.71394 | Hypothetical protein LOC100127279, mRNA (cDNA clone MGC:196362 IMAGE:9041269). |
| 6 | 684 | |
Xl.7095 | Transcribed locus. |
| 6 | 684 | |
Xl.6975 | Transcribed locus, strongly similar to NP_001080394.1 protein associated with PRK1 [Xenopus laevis]. |
| 6 | 684 | |
Xl.67614 | Transcribed locus. |
| 6 | 684 | |
Xl.6713 | Glutaryl-Coenzyme A dehydrogenase (gcdh), nuclear gene encoding mitochondrial protein, mRNA. |
| 6 | 684 | |
Xl.6465 | Securin (LOC398156), mRNA. |
| 6 | 684 | |
Xl.6305 | Transcribed locus, moderately similar to NP_001090688.1 hypothetical protein LOC100036665 [Xenopus tropicalis]. |
| 6 | 684 | |
Xl.6292 | Uncoupling protein 2 (ucp2), nuclear gene encoding mitochondrial protein, mRNA. |
| 6 | 684 | |
Xl.6269 | Hypothetical protein MGC154858 (MGC154858), mRNA. |
| 6 | 684 | |
Xl.60828 | Hypothetical protein MGC84969 (MGC84969), mRNA. |
| 6 | 684 | |
Xl.5872 | Ribonucleoprotein (MGC52881), mRNA. |
| 6 | 684 | |
Xl.57794 | CDNA clone IMAGE:6322720. |
| 6 | 684 | |
Xl.57508 | Transcribed locus, moderately similar to XP_001234452.1 PREDICTED: similar to zygote arrest 1 [Gallus gallus]. |
| 6 | 684 | |
Xl.5659 | Ralb protein (Ralb), mRNA. |
| 6 | 684 | |
Xl.55228 | MGC80541 protein (MGC80541), mRNA. |
| 6 | 684 | |
Xl.54494 | Hypothetical protein MGC85143 (MGC85143), mRNA. |
| 6 | 684 | |
Xl.53824 | Hypothetical protein MGC115529 (MGC115529), mRNA. |
| 6 | 684 | |
Xl.5269 | Ferritin heavy chain, oocyte isoform (MGC64558), mRNA. |
| 6 | 684 | |
Xl.4986 | TAF-Ibeta2 (MGC64240), mRNA. |
| 6 | 684 | |
Xl.47872 | MGC80893 protein (MGC80893), mRNA. |
| 6 | 684 | |
Xl.47702 | CDNA clone MGC:130731 IMAGE:7983334. |
| 6 | 684 | |
Xl.47001 | Hypothetical protein LOC100049085 (LOC100049085), mRNA. |
| 6 | 684 | |
Xl.4618 | Transcribed locus, strongly similar to NP_035488.1 splicing factor, arginine/serine-rich 2 [Mus musculus]. |
| 6 | 684 | |
Xl.46000 | Hypothetical protein MGC132155 (MGC132155), mRNA. |
| 6 | 684 | |
Xl.43774 | Beta subunit of casein kinase II (ck2b), mRNA. |
| 6 | 684 | |
Xl.4316 | Hypothetical LOC494735 (LOC494735), mRNA. |
| 6 | 684 | |
Xl.42475 | Transcribed locus, strongly similar to NP_008140.1 cytochrome c oxidase subunit III [Xenopus laevis]. |
| 6 | 684 | |
Xl.4127 | Hypothetical protein MGC82297 (MGC82297), mRNA. |
| 6 | 684 | |
Xl.39769 | Hypothetical protein MGC78769 (MGC78769), mRNA. |
| 6 | 684 | |
Xl.3658 | MGC81222 protein (MGC81222), mRNA. |
| 6 | 684 | |
Xl.34068 | Transcribed locus. |
| 6 | 684 | |
Xl.3077 | Myristoylated alanine rich protein kinase C substrate (marcks), mRNA. |
| 6 | 684 | |
Xl.25777 | MGC81574 protein (MGC81574), mRNA. |
| 6 | 684 | |
Xl.25685 | Hypothetical protein MGC85005 (MGC85005), mRNA. |
| 6 | 684 | |
Xl.25178 | DnaJ (Hsp40) homolog, subfamily A, member 2 (dnaja2), mRNA. |
| 6 | 684 | |
Xl.24783 | Hypothetical protein MGC83851 (MGC83851), mRNA. |
| 6 | 684 | |
Xl.24414 | PIF1 (MGC115521), mRNA. |
| 6 | 684 | |
Xl.23737 | Hypothetical protein MGC84860 (MGC84860), mRNA. |
| 6 | 684 | |
Xl.23735 | Kinetochore protein Spc24 (LOC403385), mRNA. |
| 6 | 684 | |
Xl.23320 | Phosphorylase phosphatase (ppp2r1b), mRNA. |
| 6 | 684 | |
Xl.23295 | Protein arginine methyltransferase 1 (xPRMT1), mRNA. |
| 6 | 684 | |
Xl.21819 | Hypothetical protein LOC733277 (LOC733277), mRNA. |
| 6 | 684 | |
Xl.20951 | Aquaporin (LOC398398), mRNA. |
| 6 | 684 | |
Xl.1819 | Karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (kpna2), mRNA. |
| 6 | 684 | |
Xl.15423 | MGC80633 protein (MGC80633), mRNA. |
| 6 | 684 | |
Xl.15379 | Hypothetical LOC496367 (LOC496367), mRNA. |
| 6 | 684 | |
Xl.15066 | Cofilin 2 (xac2), mRNA. |
| 6 | 684 | |
Xl.1448 | Hypothetical protein MGC84864 (MGC84864), mRNA. |
| 6 | 684 | |
Xl.11443 | Adaptor-related protein complex AP-3, sigma 1 subunit (ap3s1), mRNA. |
| 6 | 684 | |
Xl.10673 | Hypothetical protein LOC595046 (LOC595046), mRNA. |
| 5 | 570 | |
Xl.968 | Beta-transducin repeat containing (btrc-a), mRNA. |
| 5 | 570 | |
Xl.8480 | Hypothetical LOC494665 (LOC494665), mRNA. |
| 5 | 570 | |
Xl.84073 | Transcribed locus, moderately similar to NP_001120426.1 hypothetical protein LOC100145511 [Xenopus tropicalis]. |
| 5 | 570 | |
Xl.83610 | Transcribed locus, strongly similar to NP_001082290.1 IAP-like protein [Xenopus laevis]. |
| 5 | 570 | |
Xl.7927 | Hypothetical protein MGC85022 (MGC85022), mRNA. |
| 5 | 570 | |
Xl.78595 | MGC81862 protein (MGC81862), mRNA. |
| 5 | 570 | |
Xl.7830 | Glypican-4 (Xgly4), mRNA. |
| 5 | 570 | |
Xl.78285 | Transcribed locus, weakly similar to NP_001102145.1 alpha 1 type IX collagen [Rattus norvegicus]. |
| 5 | 570 | |
Xl.7819 | SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae) (sumo3), mRNA. |
| 5 | 570 | |
Xl.78078 | Transcribed locus, strongly similar to NP_001006273.1 chromosome 13 open reading frame 1 [Gallus gallus]. |
| 5 | 570 | |
Xl.77095 | MGC81431 protein (MGC81431), mRNA. |
| 5 | 570 | |
Xl.7684 | Nuclear matrix protein NMP200 related to splicing factor PRP19 (nmp200), mRNA. |
| 5 | 570 | |
Xl.76802 | Transcribed locus, strongly similar to NP_001080557.1 pescadillo [Xenopus laevis]. |
| 5 | 570 | |
Xl.76702 | Transcribed locus, strongly similar to NP_035794.1 ubiquitin B [Mus musculus]. |
| 5 | 570 | |
Xl.76674 | Hypothetical protein MGC80282 (MGC80282), mRNA. |
| 5 | 570 | |
Xl.7655 | Protein phosphatase 1 regulatory subunit 3B-A (ppp1r3b-a), mRNA. |
| 5 | 570 | |
Xl.76481 | CDNA clone MGC:154656 IMAGE:5156799. |
| 5 | 570 | |
Xl.76220 | Transcribed locus, strongly similar to NP_008137.1 cytochrome c oxidase subunit II [Xenopus laevis]. |
Source: NCBI UniGene
EST Sequences
9,704 EST sequences from this library have been submitted to the public sequence database as of 01-Dec-2008.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- whole body
- egg
Source: NCBI Clone Registry