Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 5 |
| Arg | 4 |
| Asn | 1 |
| Asp | 2 |
| Cys | 2 |
| Gln | 2 |
| Glu | 2 |
| Gly | 4 |
| His | 1 |
| Ile | 3 |
| Leu | 5 |
| Lys | 1 |
| Met | 5 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 5 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 0 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | CP000144 | 9 | 431027..431102 | 0..0 | 82.28 | 67.99 |
| Ala | GGC | CP000143 | 20 | 2741730..2741805 | 0..0 | 84.16 | 67.33 |
| Ala | TGC | CP000143 | 2 | 1810 ..1885 | 0..0 | 94.08 | 76.07 |
| Ala | TGC | CP000144 | 2 | 1812 ..1887 | 0..0 | 94.08 | 76.07 |
| Ala | TGC | CP000144 | 5 | 35485 ..35560 | 0..0 | 94.08 | 76.07 |
| Arg | ACG | CP000143 | 23 | 2813748..2813672 | 0..0 | 85.01 | 57.96 |
| Arg | CCG | CP000143 | 16 | 2344688..2344764 | 0..0 | 87.88 | 58.55 |
| Arg | CCT | CP000143 | 39 | 255271 ..255196 | 0..0 | 85.25 | 62.97 |
| Arg | TCT | CP000143 | 37 | 675497 ..675421 | 0..0 | 86.77 | 69.12 |
| Asn | GTT | CP000143 | 13 | 1920665..1920739 | 0..0 | 87.59 | 63.64 |
| Asp | GTC | CP000143 | 30 | 1679107..1679031 | 0..0 | 92.64 | 74.18 |
| Asp | GTC | CP000143 | 31 | 1678995..1678919 | 0..0 | 94.74 | 76.28 |
| Cys | GCA | CP000143 | 28 | 1852216..1852143 | 0..0 | 64.27 | 42.72 |
| Cys | GCA | CP000143 | 29 | 1849149..1849076 | 0..0 | 20.69 | 16.55 |
| Gln | TTG | CP000143 | 10 | 1479511..1479585 | 0..0 | 69.75 | 42.55 |
| Gln | TTG | CP000143 | 9 | 1479346..1479420 | 0..0 | 70.60 | 43.41 |
| Glu | TTC | CP000143 | 15 | 2139072..2139146 | 0..0 | 56.90 | 33.02 |
| Glu | TTC | CP000143 | 7 | 766852 ..766926 | 0..0 | 56.90 | 33.02 |
| Gly | CCC | CP000143 | 34 | 1413360..1413287 | 0..0 | 80.56 | 63.10 |
| Gly | GCC | CP000143 | 12 | 1843556..1843630 | 0..0 | 86.21 | 60.80 |
| Gly | GCC | CP000143 | 36 | 683925 ..683851 | 0..0 | 86.21 | 60.80 |
| Gly | TCC | CP000144 | 7 | 162128..162201 | 0..0 | 74.92 | 53.78 |
| His | GTG | CP000143 | 18 | 2495608..2495684 | 0..0 | 82.95 | 56.79 |
| Ile | GAT | CP000143 | 1 | 1686 ..1762 | 0..0 | 94.31 | 75.62 |
| Ile | GAT | CP000144 | 1 | 1688 ..1764 | 0..0 | 94.31 | 75.62 |
| Ile | GAT | CP000144 | 4 | 35361 ..35437 | 0..0 | 94.31 | 75.62 |
| Leu | CAA | CP000143 | 32 | 1609228..1609145 | 0..0 | 65.92 | 35.26 |
| Leu | CAG | CP000143 | 21 | 2916083..2916167 | 0..0 | 77.05 | 47.78 |
| Leu | GAG | CP000143 | 5 | 479857 ..479943 | 0..0 | 70.14 | 35.55 |
| Leu | TAA | CP000143 | 6 | 512637 ..512720 | 0..0 | 65.81 | 36.61 |
| Leu | TAG | CP000143 | 27 | 1857201..1857117 | 0..0 | 78.50 | 52.99 |
| Lys | TTT | CP000143 | 19 | 2687477..2687551 | 0..0 | 88.23 | 68.06 |
| Met | CAT | CP000143 | 38 | 560630 ..560555 | 0..0 | 81.70 | 63.51 |
| Met | CAT | CP000143 | 3 | 5272 ..5348 | 0..0 | 81.76 | 54.87 |
| Met | CAT | CP000144 | 10 | 704742..704818 | 0..0 | 102.45 | 81.90 |
| Met | CAT | CP000144 | 3 | 5274 ..5350 | 0..0 | 81.76 | 54.87 |
| Met | CAT | CP000144 | 6 | 38946 ..39022 | 0..0 | 81.76 | 54.87 |
| Phe | GAA | CP000143 | 25 | 2362024..2361949 | 0..0 | 84.99 | 65.32 |
| Pro | CGG | CP000143 | 24 | 2608128..2608052 | 0..0 | 90.53 | 67.35 |
| Pro | GGG | CP000143 | 35 | 1251389..1251312 | 0..0 | 79.26 | 57.71 |
| Pro | TGG | CP000143 | 8 | 972793 ..972869 | 0..0 | 88.96 | 66.81 |
| Ser | CGA | CP000143 | 14 | 1931645..1931716 | 0..0 | 21.35 | 13.94 |
| Ser | CGA | CP000144 | 12 | 15083 ..14994 | 0..0 | 67.73 | 35.72 |
| Ser | GCT | CP000143 | 40 | 215821 ..215732 | 0..0 | 78.29 | 48.06 |
| Ser | GGA | CP000143 | 26 | 1942528..1942439 | 0..0 | 69.55 | 45.14 |
| Ser | TGA | CP000144 | 8 | 373306..373395 | 0..0 | 74.44 | 39.27 |
| Thr | CGT | CP000143 | 41 | 92781 ..92706 | 0..0 | 96.40 | 78.79 |
| Thr | GGT | CP000143 | 17 | 2370733..2370807 | 0..0 | 90.21 | 63.62 |
| Thr | TGT | CP000143 | 11 | 1807746..1807817 | 0..0 | 67.15 | 35.73 |
| Trp | CCA | CP000143 | 4 | 289879 ..289954 | 0..0 | 87.73 | 71.34 |
| Val | CAC | CP000143 | 33 | 1508417..1508343 | 0..0 | 88.03 | 65.53 |
| Val | GAC | CP000143 | 22 | 3176832..3176758 | 0..0 | 83.93 | 58.87 |
| Val | TAC | CP000144 | 11 | 923940..923865 | 0..0 | 88.72 | 70.72 |
tRNA Models
CP000143.trna1 (1686-1762) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (1720-1722) Score: 94.31
HMM Sc=75.62 Sec struct Sc=18.69
* | * | * | * | * | * | * | *
Seq: GGGTCGGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCTCGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna2 (1810-1885) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (1843-1845) Score: 94.08
HMM Sc=76.07 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGATAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna3 (5272-5348) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (5306-5308) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
CP000143.trna4 (289879-289954) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (289912-289914) Score: 87.73
HMM Sc=71.34 Sec struct Sc=16.39
* | * | * | * | * | * | * | *
Seq: AGGGGTATAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGtCGTGGGTTCGAGTCCCCCTGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
CP000143.trna5 (479857-479943) Length: 87 bp
Type: Leu Anticodon: GAG at 35-37 (479891-479893) Score: 70.14
HMM Sc=35.55 Sec struct Sc=34.59
* | * | * | * | * | * | * | * | *
Seq: GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGGGTAACtCCCGTGGAAGTTCGAGTCTTCTCGACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<..>>>>>.......<<<<<<<<<<<<....
CP000143.trna6 (512637-512720) Length: 84 bp
Type: Leu Anticodon: TAA at 35-37 (512671-512673) Score: 65.81
HMM Sc=36.61 Sec struct Sc=29.20
* | * | * | * | * | * | * | * |
Seq: GCGGGCATGGCGGAAGTGGTaGACGCAAGGGTCTTAAACACCCTGTCCTCTGGAGTGCCGGTTCGATCCCGGCTGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>..<<...>>>>>.......<<<<<<<<<<<<....
CP000143.trna7 (766852-766926) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (766885-766887) Score: 56.90
HMM Sc=33.02 Sec struct Sc=23.88
* | * | * | * | * | * | * |
Seq: GGCCCGTTCGTCTATCGGTtAGGACACCAGGTTTTCAACCTGGGAAGAGGGGTTCGACTCCCCTACGGGCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
CP000143.trna8 (972793-972869) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (972827-972829) Score: 88.96
HMM Sc=66.81 Sec struct Sc=22.15
* | * | * | * | * | * | * | *
Seq: CGGAGTGTAGCGCAGCCtGGTAGCGCGCCTGCTTTGGGAGCAGGATGtCGGGGGTTCGAATCCCTCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna9 (1479346-1479420) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (1479378-1479380) Score: 70.60
HMM Sc=43.41 Sec struct Sc=27.19
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGCCAAGTGGTAAGGCAGCGGTTTTTGGTACCGCCATtCGTTGGTTCGAATCCAGCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna10 (1479511-1479585) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (1479543-1479545) Score: 69.75
HMM Sc=42.55 Sec struct Sc=27.20
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGCCAAGCGGTAAGGCAGCGGTTTTTGGTACCGCCATtCGTTGGTTCGAATCCAGCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna11 (1807746-1807817) Length: 72 bp
Type: Thr Anticodon: TGT at 33-35 (1807778-1807780) Score: 67.15
HMM Sc=35.73 Sec struct Sc=31.42
* | * | * | * | * | * | * |
Seq: GCCCCGTTAGCACAGTGGTAGTGCAGCGCTCTTGTAAAGCGAAGGtCGTTCGTTCAAATCGGACACGGGGCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.
CP000143.trna12 (1843556-1843630) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (1843588-1843590) Score: 86.21
HMM Sc=60.80 Sec struct Sc=25.41
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGCTCAGGGGTAGAGCATTACCTTGCCAAGGTAAGGGtCGTGAGTTCGAATCTCATCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna13 (1920665-1920739) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (1920697-1920699) Score: 87.59
HMM Sc=63.64 Sec struct Sc=23.95
* | * | * | * | * | * | * |
Seq: TCCGGCGTAGCTCAGCGGTAGAGCAGTTGACTGTTAATCAATTGGtCGTAGGTTCGATCCCTACCGCCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna14 (1931645-1931716) Length: 72 bp
Type: Ser Anticodon: CGA at 52-54 (1931696-1931698) Score: 21.35
HMM Sc=13.94 Sec struct Sc=7.41
* | * | * | * | * | * | * |
Seq: TTGGTTGTGTGACGCTGCCgGGATTGACTGTTAATCAATTGGtCGTAGGTTCGATCCCTACCGCCGGAGCCA
Str: >>.>.>>...............>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<.<<....
CP000143.trna15 (2139072-2139146) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (2139105-2139107) Score: 56.90
HMM Sc=33.02 Sec struct Sc=23.88
* | * | * | * | * | * | * |
Seq: GGCCCGTTCGTCTATCGGTtAGGACACCAGGTTTTCAACCTGGGAAGAGGGGTTCGACTCCCCTACGGGCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
CP000143.trna16 (2344688-2344764) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (2344722-2344724) Score: 87.88
HMM Sc=58.55 Sec struct Sc=29.33
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGCTGCCCTCCGAAGGCAGAGGtCACACGTTCGAATCGTGTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna17 (2370733-2370807) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (2370765-2370767) Score: 90.21
HMM Sc=63.62 Sec struct Sc=26.59
* | * | * | * | * | * | * |
Seq: GCTGCAGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGAGAGTTCAATCCTCTCCTGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna18 (2495608-2495684) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (2495642-2495644) Score: 82.95
HMM Sc=56.79 Sec struct Sc=26.16
* | * | * | * | * | * | * | *
Seq: GCCGGCTTAGCTCAGTTGGTtAGAGCACCAGATTGTGGATCTGGGGGtCCCCCGTTCGAGCCGGGGAGTCGGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna19 (2687477-2687551) Length: 75 bp
Type: Lys Anticodon: TTT at 33-35 (2687509-2687511) Score: 88.23
HMM Sc=68.06 Sec struct Sc=20.17
* | * | * | * | * | * | * |
Seq: GGGCGGGTAGCTCAGTGGTAGAGCAGCTGACTTTTAATCAGCTGGtCGTGGGTTCGATACCCACCCCGCTCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna20 (2741730-2741805) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (2741763-2741765) Score: 84.16
HMM Sc=67.33 Sec struct Sc=16.83
* | * | * | * | * | * | * | *
Seq: GGGGTCATAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna21 (2916083-2916167) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (2916117-2916119) Score: 77.05
HMM Sc=47.78 Sec struct Sc=29.27
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCACGGTTCAGGTCCGTGTGCCGCAAGGCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
CP000143.trna22 (3176832-3176758) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (3176800-3176798) Score: 83.93
HMM Sc=58.87 Sec struct Sc=25.06
* | * | * | * | * | * | * |
Seq: GGGCGGTTAGCTCAGCGGTAGAGCACTACGTTGACATCGTAGTGGcCACTGGTTCGATCCCAGTACCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna23 (2813748-2813672) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (2813714-2813712) Score: 85.01
HMM Sc=57.96 Sec struct Sc=27.05
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCATCAGACTACGAATCTGAGGGtCGGGCGTTCGAATCGCTCCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna24 (2608128-2608052) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (2608094-2608092) Score: 90.53
HMM Sc=67.35 Sec struct Sc=23.18
* | * | * | * | * | * | * | *
Seq: CGGAGCGTAGCGCAGCCtGGTAGCGCACCTGCTTCGGGAGCAGGGGGtCGGAGGTTCGAATCCTCTCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna25 (2362024-2361949) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (2361991-2361989) Score: 84.99
HMM Sc=65.32 Sec struct Sc=19.67
* | * | * | * | * | * | * | *
Seq: GCCCAGATAGCTCAGTTGGTAGAGCAGCGGATTGAAAATACGCGTGtCGCTGGTTCGATTCCGGCTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna26 (1942528-1942439) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (1942494-1942492) Score: 69.55
HMM Sc=45.14 Sec struct Sc=24.41
* | * | * | * | * | * | * | * | *
Seq: GGAGCGGTGGCCGAGTGGTcgAAGGCGCACGCCTGGAAAGTGTGTAGGCGGGGAACCGTCTCGAGGGTTCGAATCCCTCTCGCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
CP000143.trna27 (1857201-1857117) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (1857167-1857165) Score: 78.50
HMM Sc=52.99 Sec struct Sc=25.51
* | * | * | * | * | * | * | * |
Seq: GCGGGTGTGGCGGAACTGGTaGACGCAACAGGTTTAGGTCCTGTCGCCGCAAGGCGTGGGGGTTCGAGTCCCTTCACCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
CP000143.trna28 (1852216-1852143) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (1852184-1852182) Score: 64.27
HMM Sc=42.72 Sec struct Sc=21.55
* | * | * | * | * | * | * |
Seq: GGCGGGTTGGCGGAGAGGTTACGCAGCGGATTGCAAATCCGTGAAGACCGGTTCGATTCCGGTACCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
CP000143.trna29 (1849149-1849076) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (1849117-1849115) Score: 20.69
HMM Sc=16.55 Sec struct Sc=4.14
* | * | * | * | * | * | * |
Seq: GGCTCTTTATtTTCAATGGAATTAACCGGATTGCAAATCCGTGAAGACCGGTTCGATTCCGGTACCCGCCTCCA
Str: >>>...>....>...........<..>>>>.......<<<<.....>>>>>.......<<<<<<...<<<....
CP000143.trna30 (1679107-1679031) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (1679073-1679071) Score: 92.64
HMM Sc=74.18 Sec struct Sc=18.46
* | * | * | * | * | * | * | *
Seq: GCGGTTGTAGCTCAGTCGGTtAGAGTACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGCCCCGTCAACCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna31 (1678995-1678919) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (1678961-1678959) Score: 94.74
HMM Sc=76.28 Sec struct Sc=18.46
* | * | * | * | * | * | * | *
Seq: GCGGTTGTAGCTCAGTTGGTtAGAGTACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGCCCCGTCAACCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna32 (1609228-1609145) Length: 84 bp
Type: Leu Anticodon: CAA at 34-36 (1609195-1609193) Score: 65.92
HMM Sc=35.26 Sec struct Sc=30.66
* | * | * | * | * | * | * | * |
Seq: GCGGTTGTGGCGGAATGGTaGACGCGGGGGTCTCAAACACCCTTTCCTCACGGAGTGTCGGTTCGAGTCCGACCAGCCGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
CP000143.trna33 (1508417-1508343) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (1508385-1508383) Score: 88.03
HMM Sc=65.53 Sec struct Sc=22.50
* | * | * | * | * | * | * |
Seq: GGGCGATTAGCTCAGCGGTAGAGCGCTTCGTTCACATCGAAGATGtCAGCGGTTCAAATCCGTTATCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna34 (1413360-1413287) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (1413328-1413326) Score: 80.56
HMM Sc=63.10 Sec struct Sc=17.46
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAAGCTTCCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna35 (1251389-1251312) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (1251354-1251352) Score: 79.26
HMM Sc=57.71 Sec struct Sc=21.55
* | * | * | * | * | * | * | *
Seq: CGGGCCGTGGCGCAGCCtGGTtAGCGCGTCCGTCTGGGGGGCGGAAGGtCGCGAGTTCGAATCTCGCCGGCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna36 (683925-683851) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (683893-683891) Score: 86.21
HMM Sc=60.80 Sec struct Sc=25.41
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGCTCAGGGGTAGAGCATTACCTTGCCAAGGTAAGGGtCGTGAGTTCGAATCTCATCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna37 (675497-675421) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (675463-675461) Score: 86.77
HMM Sc=69.12 Sec struct Sc=17.65
* | * | * | * | * | * | * | *
Seq: GGGCTCATAGCTCAACTGGAtAGAGCAGCCGACTTCTAATCGGCAGGtTGAGGGTTCGAGTCCTTCTGGGCCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna38 (560630-560555) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (560597-560595) Score: 81.70
HMM Sc=63.51 Sec struct Sc=18.19
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTcAGAGCAGGGCGCTCATAACGCCTTGGtTGGGGGTTCGAGTCCCTCCGGGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna39 (255271-255196) Length: 76 bp
Type: Arg Anticodon: CCT at 34-36 (255238-255236) Score: 85.25
HMM Sc=62.97 Sec struct Sc=22.28
* | * | * | * | * | * | * | *
Seq: GGCCCCGTAGCTCAACGGAtAGAGCGATCCCCTCCTAAGGGATAGGtTGCAGGTTCAAGTCCTGCCGGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000143.trna40 (215821-215732) Length: 90 bp
Type: Ser Anticodon: GCT at 35-37 (215787-215785) Score: 78.29
HMM Sc=48.06 Sec struct Sc=30.23
* | * | * | * | * | * | * | * | *
Seq: GGAGACGTGGCCGAGTGGTcgAAGGCACACCCCTGCTAAGGGTGCAGGCGGGAAACCGTCTCGAGGGTTCGAATCCCTTCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
CP000143.trna41 (92781-92706) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (92748-92746) Score: 96.40
HMM Sc=78.79 Sec struct Sc=17.61
* | * | * | * | * | * | * | *
Seq: GCCGGTGTAGCTCAGCTGGTAGAGCACGTCATTCGTAATGATGGGGtCGGGGGTTCGAGTCCCTTCACCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna1 (1688-1764) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (1722-1724) Score: 94.31
HMM Sc=75.62 Sec struct Sc=18.69
* | * | * | * | * | * | * | *
Seq: GGGTCGGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCTCGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna2 (1812-1887) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (1845-1847) Score: 94.08
HMM Sc=76.07 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGATAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna3 (5274-5350) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (5308-5310) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
CP000144.trna4 (35361-35437) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (35395-35397) Score: 94.31
HMM Sc=75.62 Sec struct Sc=18.69
* | * | * | * | * | * | * | *
Seq: GGGTCGGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCTCGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna5 (35485-35560) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (35518-35520) Score: 94.08
HMM Sc=76.07 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGATAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna6 (38946-39022) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (38980-38982) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
CP000144.trna7 (162128-162201) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (162160-162162) Score: 74.92
HMM Sc=53.78 Sec struct Sc=21.14
* | * | * | * | * | * | * |
Seq: GCGGGTATGGTGAAATGGTATCACACGAGCCTTCCAAGCTCTTGGCGCGGGTTCGATTCCCGCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna8 (373306-373395) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (373340-373342) Score: 74.44
HMM Sc=39.27 Sec struct Sc=35.17
* | * | * | * | * | * | * | * | *
Seq: GGAAGCGTGGCCGAGTGGTttAAGGCTCTGGTCTTGAAAACCAGCGACGGTGCGAGCCGTCCGTGGGTTCGAATCCCACCGCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
CP000144.trna9 (431027-431102) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (431060-431062) Score: 82.28
HMM Sc=67.99 Sec struct Sc=14.29
* | * | * | * | * | * | * | *
Seq: GGGGTCGTAGCTCAGTTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCAGGGGTTCGATCCCCCTCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna10 (704742-704818) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (704776-704778) Score: 102.45
HMM Sc=81.90 Sec struct Sc=20.55
* | * | * | * | * | * | * | *
Seq: GGCGAGGTAGCTCAGCTGGTtAGAGCACACGACTCATAATCGTGGGGtCGGGGGTTCAAGTCCCCCCCTCGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna11 (923940-923865) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (923907-923905) Score: 88.72
HMM Sc=70.72 Sec struct Sc=18.00
* | * | * | * | * | * | * | *
Seq: GGGTGGTTAGCTCAGTTGGTAGAGCGTCTCGTTTACACCGAGGATGtCGGGGGTTCGAGCCCCTCACCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
CP000144.trna12 (15083-14994) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (15049-15047) Score: 67.73
HMM Sc=35.72 Sec struct Sc=32.01
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCGGCGGTCTCGAAAACCGTTGTCGGTGTGAGCCGACCCAGGGTTCGAATCCCTGTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
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