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Entrez CDD Structure Protein Help
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COG4565: CitB 
Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Statistics
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PSSM-Id: 34203
View PSSM: COG4565
Aligned: 15 rows
Created: 7-Oct-2002
Updated: 7-Oct-2002
Structure
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Aligned Rows:
COG4565 is classified as a model that may span more than one domain.
COG4565 is not assigned to any domain superfamily.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506732    2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTpiDLILLDIYMQKENGLDLLPVLHNARCKSDVI 81
gi 15213979   7 IRVLLIEDDPMVQEVNRMFVEKLSGFTIVGTTATGEEGMVKTRELQP--DLILLDIFMPKQDGLSFIKQIREQYIDVDII 84
gi 21362443   5 YKVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAalDLILLDVYIPDVKGLELLWAIREKFRDVDIM 84
gi 21362407   2 IHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALLKEHKA--DLLLLDIYMPDELGTALIPDIRSRFPEVDIM 79
gi 15213975   6 WKVLLIEDDPMVQEVNKDFITTVKGVTVCATAGNGEEGMKLIKEEQP--DLVILDVYMPKKDGIKTLQEIRKQKLEVDVI 83
gi 16080205   2 INVLIVEDDPMVGELNKRYLSQIDGFQLKGIASSFQSALHILG--EHhiDLILLDIYMPGKNGLELLTELRAQNEAVDVI 79
gi 19551319   5 LKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSP--DLLLVDVYLPDGDGIDLVGTSN-----IDAF 77
gi 16763442   4 ITTLIVEDEPMLAEILVDTIKIFPQFSIVGIADKLESAKKQIRLYQP--QLILLDNFLPDGKGIDLIRHTISTNYTGRII 81
gi 16764003   5 LTLLIVEDETLLAEMHAEYIRHIPSFNQIWLAGNLAQARMMIDRFKP--GLILLDNYLPDGKGITLLHELMQSRYPGGVV 82
gi 15640809   5 IDVLIVEDETSIADVHSFYLKQTARFRPVGVAQSINEARNMVRILKP--KLIFLDNYLPDGRGIEFLKELTHQPQAPDVI 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506732   82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSnEQDPRRLP--KGL 159
gi 15213979  85 AVTAANDTKTIKTLLRYGVMDYLVKPFTFERLKAALTQYEEMFRKMQKEAELSQDSLDEMIKQKQA-QANMDDLP--KGL 161
gi 21362443  85 MVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRLDAYVQKRELFGERRQVSQEELDQLRQVQVRvQVGETPLP--KGI 162
gi 21362407  80 IITAATETRHLQEALRAGIAHYLIKPVTADKFRQVLLQYKEKRKLLMSQPEVSQSMIDHIFGNGVKtALPAEDLP--TGI 157
gi 15213975  84 VVSAAKDKETISLMLQNGAVDYILKPFKLERMRQALEKYKQYKQKIEANDTLSQEQLDAILN--IP-QQAVQDLP--KGL 158
gi 16080205  80 VISAASELDVIKKTLRYGAVDYLIKPFEFERFQTALSDYRRKQKVYSTHRNMSQKELDAELFQK-KeATEKVQLP--KGL 156
gi 19551319  78 VLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDRYVRYRHVLSGTQGLSQDKIDQATAILNG-TQAPVTVS----- 151
gi 16763442  82 FITADNHMDTISDALRMGVFDYLIKPVHYQRLQHTLERFTRYRSSLRSSEQANQTHVDALFNIQAK-EQTAEPNSglRGI 160
gi 16764003  83 FTTAASDMETVAEAVRSGAFDYLVKPIAYERLGQTLTRYQQRRRMLASADSASQKQIDEMFNAYAR-GEPKGDLP--TGI 159
gi 15640809  83 FITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSLERYLKYISSLRANDSVNQRHVDELFNFQAK-TDQLDGLP--KGI 159
                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2506732  160 TPQTLRTLCQWIDaHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRIQAE 229
gi 15213979 162 HAHTLQQVIERLE-ELDEPKSAEEIGRDVGLARVTVRRYLNYLESVGQVEMDLTYGSIGRPIQTYKLKQG 230
gi 21362443 163 DRLTLEKVVNALEeAETQGLTAMEGARLIGASRSTVRRYFEYLIHTKKAKAEVNYGDVGRPERRYFLC-- 230
gi 21362407 158 NSITLRKIKEALQtAS-EGLTAEELGEKMGASRTTARRYAEYLVSKEEARAELEYGIIGRPERKYYLAAD 226
gi 15213975 159 NHFTMNEVTAFLK-QQTASLSAEEVAKALGIARVTARRYLDYLEKTGIIKLDVQYGGVGRPVNRYVLKG- 226
gi 16080205 157 TKSTLKLIWSSIQsFENESFTTEDLAKHTEISQVSIRKYLKFLEDIQVLNVEMAYGTIGRPVFQYNVNNS 226
gi 19551319 152 RSATEQLLLDALE---GQELSATEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLYSKPLL 218
gi 16763442 161 DENTFNRVRQIFA-DPQAVHTADTLAQILGSSKTTARRYLEQGVKNNFLEAEISYGKVGRPERLYRGKV- 228
gi 16764003 160 DALTLNAVMRLFA-DPTVRHTAETVAQALTISRTTSRRYLEYCASQHLIVAEIIHGKVGRPQRIYHGG-- 226
gi 15640809 160 DELTLIKIQEIYHhEPQAAYTAELLGQAIGISKTTARRYLEYCVASGFLEACIQHGRVGRPERLYQKR-- 227
Citing CDD
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35: D237-40
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