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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs9932966          
refSNP ID: rs9932966
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_006043.1:c.485+22520G>A
NT_010393.15:g.14162015G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13771997 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9932966 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13771997BCM_SSAHASNP|chr16.NT_010393.14_14161269fwd/TA/Gacacacggacatatatatattgacatatattatatatacacacaaacacacacacatata11/05/0311/22/03119Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9932966|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=119
 TACAGTTTTT TTTTTTTCCA TTATTTAAAT AGAAacggag cctctaaagt cagactgtcc
 tgagttcaac tctctgctgc tttgcttagt aacctatgtc ctcctgggca acttatttac
 ctgctctaca cgtcattctc ccatgtgtga agtagggata ataatcatac tgggatgata
 tgaaaaatga ggaattaact gtgcaaagtg cttagaggaa ggctgagccc atagcaagta
 ctATATAGGA GTTTTCCACC TTGATATTGc agtagtcatc ccttatccag ggggatatgt
 ccccagatcc ccagtggatg cctgaaactg ccgataatac caaaccctat atataatgtt
 tttttcctat GTGTGTGTGT GTGTGtatat atatgtgtat atatatacac atatatatac
 acagatatat gtatatatat gtatatatat acatatatat atatacacac acacacggac
 atatatatat tgacatatat
 R
 tatatataca cacaaacaca cacacatata tgtatGCaca cacacgtatc tatgataaag
 tttaagcttc aaattaggga tagaagagtt aatgcagaat tagtcacagt attgttgtta
 agagattaac aactaataaa aaaagaacaa ttataactat actataataa agttatgttc
 atgtgatctc tctctaaata tcttatttta ctatactcgt tcttcttgtg atgatgtgag
 atgatCTCTA ACACACTAGT CCGAATTTAA TGTTTTCAAA AAAAAGAATT TCATCTTTTC
 AAttctctgc atatgctttt acattcatct actgtttgtg gcaagaggta ctggttttcc
 acttatgtgc ctaacaaaat tgtaggtaaa aaattgttct atgtaagtga aaaaaaaagt
 gagtggaatt caaagaaaaa tataaagtaa acaatagtgc aaggatatgg caggaactgt
 gggagttgca tgcaaatgac

  GeneView back to top
GeneView via analysis of contig annotation: HS3ST2 heparan sulfate (glucosamine) 3-O-sulfotransferase 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010393->NM_006043
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_010393->NM_006043->NP_00603414162015forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9932966 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838400.262164120938501minusCalt_assembly_8HuRefHuRefview500
16NW_926217.114863021628426plusGalt_assembly_1CeleraCeleraview500
16NT_010393.151416201522756437plusGref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010393
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .