Reference SNP(refSNP) Cluster Report: rs16852970

Reference SNP(refSNP) Cluster Report: rs16852970

refSNP ID: rs16852970
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	123/129
Map to Genome Build:	36.3

Allele
Variation Class:	DIP: deletion/insertion polymorphism
RefSNP Alleles:	-/TTAACA
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NT_006238.10:g.960445T>TTAACA

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss28459982 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs16852970 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss28459982	KYUGEN\|QH06636		fwd/	-/TTAACA	cgaacctcggtactggtctgac	tggaggaggaattgtctaaggttaaacgca	07/07/04	05/13/05	123	Genomic			unknown

Fasta sequence (Legend)

 CGAACCTCGG TACTGGTCTG AC
 N
 TGGAGGAGGA ATTGTCTAAG GTTAAACGCA AACTGCTGAG AGATTTGGGG CGGGGGGCAC
 ACATTTACAT TCATTCGTAT TAAATATATA CCTGTTGAAT TTGTGCTTTT TCTCAAATGC
 TTCAGAGACT CGAGCTTTAG AGTAATTGGG ATGGTGAAAG GATGGGTTTC CAGAAACTTC
 GCCCAAAATT AAAGACTCCA TCRAAAGGAC TGCTCCATAC ACTCAAGGAA CACCCACCAA
 CAAATCCCGT CTCCACAACC ACCAGATTAT CTCACCGGCG AGTGAGACTG CAAGGTTTGG
 GGG

GeneView

GeneView via analysis of contig annotation: UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_006238->NM_004181

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_006238->NM_004181->NP_004172	960445	forward	5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs16852970 maps exactly once on NCBI human chromosome 4

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
4	NW_001838903.1	958860	40580425	plus	T	alt_assembly_8	HuRef	HuRef	view	22
4	NT_006238.10	960445	40953236	plus	T	ref_assembly	reference	reference	view	22
4	NW_922073.1	31828522	41701780	plus	T	alt_assembly_1	Celera	Celera	view	22

NCBI Resource Links

Submitter-Referenced
GenBank
NT_006238.10

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	YES	YES

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Revised: May 25, 2006 1:38 PM .