prokMSA_id: 139573
prokMSAname: Corynebacterium glutamicum str. CICC10057
GenBank ACCESSION: DQ212983.1
GenBank GI: 77176827
Pubmed/Medline:
RDP_id: S000614414
NCBI_tax_id: 1718
Study_id: 25376
Chimera Test Result
bellerophon=checked, not chimeric
bel3_div_ratio=
G2_chip_tax_string=Unclassified
Hugenholtz_tax_string=Bacteria; Actinobacteria; Actinobacteridae; Gordoniaceae; Corynebacteriaceae
Ludwig_tax_string=Unclassified
Pace_tax_string=Unclassified
RDP_tax_string=Bacteria; Actinobacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium
ncbi_tax_string=Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium
authors(alphabetically)=Cheng,C., Liu,G., Tao,S.
blast_perc_ident_to_template=88.1
chi_checked=1
contact_info=CICC, China National Academy of Food and Fermentation Industries, Xiaoyun Road 32#, Chaoyang District, Beijing 100027, China
create_date=11-OCT-2005
decision=named_isolate
description=Corynebacterium glutamicum strain CICC10057 16S ribosomal RNA gene, partial sequence
longest_insertion=2
ncbi_acc=DQ212983
non_ACGT_percent=0.0000
organism=Corynebacterium glutamicum
perc_ident_to_invariant_core=98.8
prokMSA_id=139573
prokMSAname=Corynebacterium glutamicum str. CICC10057
small_gap_intrusions=3
source=Corynebacterium glutamicum
span_aligned=2..1461
strain=CICC10057
submit_date=17-AUG-2005
template=13067
timestamp=20060405130107
title=Molecular Taxonomic Study on Corynebacterium glutamicum
unaligned_length=1460
update_date=11-OCT-2005
>Corynebacterium glutamicum str. CICC10057 prokMSA_id:139573 DQ212983.1
CCTGGCGGCGTGCTTAACACATGCAAGTCGAACGCTGAAACCAAATGCTT
GCATTTGGTGGATGAGTGGCGAACGGGTGAGTAACACGTGGGTGATCTGC
CCTACACTTTGGGATAAGCCTGGGAAACTGGGTCTAATACCGAATATTCA
CACCACCGTAGGGGTGGTGTGGAAAGCCTTATGCGGTGTGGGATGAGCCT
GCGGCCTATCAGCTTGTTGGTGGGGTAATGGCCTACCAAGGCGTCGACGG
GTAGCCGGCCTGAGAGGGTGTACGGCCACATTGGGACTGAGACACGGCCC
AGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGC
CTGATGCAGCGACGCCGCGTGGGGGATGACGGCCTTCGGGTTGTAAACTC
CTTTCGCTAGGGACGAAGCCTTATGGTGACGGTACCTGGAGAAGAAGCAC
CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTG
TCCGGAATTACTGGGCGTAAAGAGCTCGTAGGTGGTTTGTCGCGTCGTCT
GTGAAATCCCGGGGCTTAACTTCGGGCGTGCAGGCGATACGGGCATAACT
TGAGTGCTGTAGGGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCA
GATATCAGGAGGAACACCAATGGCGAAGGCAGGTCTCTGGGCAGTAACTG
ACGCTGAGGAGCGAAAGCATGGGTAGCGAACAGGATTAGATACCCTGGTA
GTCCATGCCGTAAACGGTGGGCGCTAGGTGTAGGGGTCTTCCACGACTTC
TGTGCCGCAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTACGGCCGCAA
GGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATG
TGGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGCTTGACATGGAC
CGGATCGGCGTAGAGATACGAGTTCCCTTGTGGTCGGTTCACAGGTGGTG
CATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC
GAGCGCAACCCTTGTCTTATGTTGCCAGCACATTATGGTGGGTACTCATG
AGAGACTGCCGGGGTTAACTCGGAGGAAGGTGGGGATGACGTCAAATCAT
CATGCCCCTTATGTCCAGGGCTTCACACATGCTACAATGGTCGGTACAGC
GAGTTGCCACACCGTGAGGTGGAGCTAATCTCTTAAAGCCGGCCTCAGTT
CGGATTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATC
GCAGATCAGCAACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCG
CCCGTCACGTCATGAAAGTTGGTAACACCCGAAGCCAGTGGCCCAACCTT
TTTAGGGGGGAGCTGTCGAAGGTGGGATCGGCGGTTGGGACGAAGTCGTA
ACATGTAAGC
>Corynebacterium glutamicum str. CICC10057 prokMSA_id:139573 DQ212983.1
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................................................C-
-TGG-C--G-GC-G-TG--C----T-T--AACACA-T-GC-A-AGT-CGA
-A-CGC---------T-G---AA-A-----------CC------------
----------AA--------------------------------------
--------------ATG-C-------------------------------
--------------------------------------------------
-TTG-CATTTGG---------------TG--G--AT--G--AG-T-GG-C
-GA-A--C-------------GGG-TGAGT-A--AC-AC-G-T-G-GG--
-TGA--T-CT-G--C-C-CTA--CA-C-----------------------
-------------------------------------------T-TT---
-GGG-AT-AA-GCC-------------------------T-G-G------
-----------------GAA-A---CTG-GGT-CTAA-TA---CC-G--A
-AT-A---------------------------------T-TC-A-C--A-
-C-----------------CA---C--C----------------------
--------------------------------------------------
-----------------------------------------------G-T
A-G-----------------------------------------------
--------------------------------------------------
-------------------------------------G-G-G--T-G---
------------G--T-G---T-G--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------------GAAA--G-C-C------------
--------------------------------------------------
--------------------------------------------------
----------------------TTA-------------------------
--------------------------------------------------
--------------------------------------------------
----T--G---C-G--------------G----T-G---T-GG-G---AT
---G-A-----G-CCT-GCG--G-CCT--A------TC--A--G-CT-T-
---G---TTGG-T-G-GG-G-T----AAT-GG-C-C-T-ACCA--A-GG-
C-G--T-CG-A------------CGG-G-T------AG-CC-G-G-CCT-
G-AG----A--GG-GT--G-TA-C-GG-CCAC-A-TTGGG--A-C-TG-A
-GA-C-AC-G-G-CCCAGA-CTCC-TAC-G--G-G-A-G-GC-A-GC-A-
G-TG---GG-G-A-ATA-TTGCA-C-AA-T-GG--GC-GC-A----A-G-
CC-T-GA-TG-CA-GCGA-CGCC-G-CG-T---G-G-G--G--GA-T-G-
-A--C-G-G-CC-----TT-CG---------G-G-T-T-G-T--A---AA
-C-TCC--------TT-TC-G-C--T-AGG----GA-C--G---AAGCCT
T---ATG-----------G--T----------------------------
-----GA-CG-GT-A-C-CT-G-GA-G---------AA-----------G
AAGC-ACC-GG-C-TAA---C--T-ACGT--GCCA--G-C---A--GCCG
---C-GG--TA-AT--AC---GT-AG-GGT-GCG-A-G-CG-TTGT-C-C
GG-AA-TT-A--C-T--GGGC-GTA----AA-GAGC-TC--G-TA-G-G-
T-G------------G--T-TT-G-T-C-GC----G-T-C-G---T-CTG
-TG-A-AA-TC--CC-GGG-G-----------------------------
---------------------------------------CT-T-AA----
--------------------------------------------------
-------------------CT-T-C-GG-GC-G----T-G-C-A-G-G--
------C--GA-T-A-C-G-G-GCA--T-AAC------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
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--------------------------------------------------
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--------------------------------------------------
--------------------------------------------------
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--------------------------------------------------
---------------------T-T-G-A-G-T-G-----C-TG--TA-G-
G------------G-GA-G-AC-T----GG--AATT-CCT-G-GT--GT-
A-GCG-GTGAAA-TG-CGC-AGAT-A-TC-A-GGA--GG-A-AC-A-CC-
AA--T--G--GC-GAA-G--G-C---A----G--G-T-CTCTG------G
-GC-AG--------------------------------------------
------------------TA-A-C-T--GA--CG-----CT-GA-GG--A
-G-CGA--AA-G-C--------------A-TGGG-TAG-C-G-AACA--G
G-ATTA-G-ATA-C-----CC-T-G-GTA-G-T----C-CA--T-G-CCG
-T-AAA--C-GGTG-GG--CG-CT---------A-GG--T--G-T-AG-G
-GG-T--C------------------------------------------
--------------------------------------------TTC-CA
-C------------------------------------------------
--------------------------------------------------
----------------------------------------------G-A-
C-TT--C-T-G-T-GC-C------GC--A----GC-TAA--CG-C-A-T-
-T--AA-GC--G----C-CCC-GCC-T-G-GG-GAG-TA---CGG-----
C-C--G-C-A-A-GGC-T--AAA-ACTC-AAA---------GGAA-TTG-
ACGGG-G-G-CCCG----C-A--C-A-A-GCG-GC-G--G--AG-CA-T-
-GT-GGA-TT-AATT-C-G-ATG-CAAC-G-CG-A-AG-A-A-CC-TT-A
-CC-TGGGC-TT-G-AC-A-T-G------------G-ACC-G-G------
-------A-TC-G-G-C--GT--A-GA-G-A-T--A-C-G--A-G-T-T-
---------CC-------------------------------------C-
-TT-GT-----------------------------------------GG-
------------TC-GGT---T--CA------------------------
---------------------------C-A-G-G-T-GGTG-CA-TGG-T
T--GTC-GTC-A-GC-TC---G-TG-TC-G--TGA-GA-TGT-T-GG-G-
TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC-C-T-TG--T
C--T-TATG--T-T-G-C-C---AG-C-A--C--A---------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
----------------TTA-------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-----------------------------TG---G----T-G--------
----G----G---T-A--CT---------------C-A-T-G-A-GA-G-
-AC-T-G-CCG--G-G----------------------------------
--G-T---TAA----------------------------------C-T-C
-G--G-A-GG-A--AGG-T--GGGG-A-TGAC-GTC--AAAT-C---ATC
-A-T-G-C-C-C-CTT----AT-G--TC-C-A-GG-GC-TT-CAC-ACAT
G-C--TA--CAATG---G-TCGG-T-A--C-AGC-GA-GT----------
--------------------------------------------------
--------------------------------------T-G-C-C-A--C
-ACCG-T--G---------------------------------------A
-GG-T-G-----------G--A-G-CT---A----------A--T-C-T-
-----CTT-AAAGC-CG-G-C-C-T-CAG-TTC--------GGA-T-TGG
GG-TC--T-GCAA-CT-C--------------------------------
--------------------------------------------------
---------------G-ACCCC-A-T-G-AA-G-TC-GGAGT-CG-C-TA
--G-TA-AT-C-G-C----AGA-TC-A-G-CA------AC--GCT-GC-G
-GT-G-AAT-ACGT-T-CCCGGGCCT-TGTA----CACACCG-CCC-GTC
-----A---CG--TCA-TG-AA-A--G---TTG-G-TA-AC-ACC--C-G
AA------G--C-CAG-TG-G-C-C-C-AA-C-C----------------
-------------------------------------------TTT-TT-
A-------------------------------------------------
--------------------------------------------------
---GG-G--GG-G--A---GC-TGT--CG--AAG-G----T-GGG-AT-C
GG------------------------CG--GTT-GGGA-CG-AAG-TCGT
AACAT-GTAAG-C.....................................
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