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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs11655061          
refSNP ID: rs11655061
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_014238.1:c.-40+4381G>A
NT_010799.14:g.619109G>A
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss16747849 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11655061 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss16747849CSHL-HAPMAP|CSHL-HuAA-200402.chr17.NT_010799.14_619109byFreqfwd/TA/Gctctcttttctgggatcaatccagggcacccatggtttacattattttgatttatcatgt02/17/0410/26/06120Genomicunknown
ss40775645ABI|hCV27059139fwd/TA/Gctctcttttctgggatcaatccagggcacccatggtttacattattttgatttatcatgt07/17/0507/17/05126Genomicunknown
ss84644659HGSV|Cor19129_SNV_20070510.chr17_22906242fwd/TA/Gctctcttttctgggatcaatccagggcacccatggtttacattattttgatttatcatgt12/06/0712/07/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11655061|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 cacccccaga ttggactgtc tagttgcagg aaaacaagct cagggctctc actgattcta
 cattatggtg agttgtataa ttatttcatt atatattaca atgtaataga ataaagtgca
 tgataaatgt aatgcacttt aatcctctgg aaaccatccc ccgctccctg tccctggaaa
 aattatcttc catgaaacca gttcctggtg ccaaaaaggt tggggaccac tgTTCTAAAC
 CATTGTTTAT Tttcttaaat aaacttttta tttcggaata attttagatt tacagaaaag
 ttgcagggat gtacagagag ttctcgtatg tacccctcac ccagtttccc catcattaac
 gttgtcgtga ccacagtgcc tttgtcaaaa ctgaggaaat gacactggta tattacaatg
 aacgcaactc cagactatgt aggtttgacc agtttttcct ttactgtcct ctctcttttc
 tgggatcaat ccagggcacc
 R
 catggtttac attattttga tttatcatgt ctccccagtt tcctctgctc tgtgacagtt
 tctcagtctt cccttaattt catgacgttg acactacttt gTTTTTTGGA AGTGAGCCCT
 CCCTTAGGAT TGGGGGGTAt gaggggtagg tgggttaagc tccatctcct ctgggggtgt
 atctacacag attatttgga acttttctgt aggaaagagt tgtcttttct cctccgttta
 tttattcatt cagtcattta tatcagtata ggctcatgtc tttttctttt acacattggg
 ttctaatcca atactacatg atttattttg tttctcaagt tcttccagct ttggccattg
 ggagttcttg caggtttgtt cctgcactct gtgacattgc ccatccttca gttttgtttg
 gcgtgtgtgt gtgtgtgtgt gtgtgtgtag cacttccgtg tgtagcactt cctttgcttt
 ctgacactac agtatgcttc

  GeneView back to top
GeneView via analysis of contig annotation: KSR1 kinase suppressor of ras 1
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label
Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010799->NM_014238
function
"
Group
label
Contig-->mRNA-->ProteinContig
position
mRNA
orientation
mRNA
pos
FunctiondbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
referenceNT_010799->NM_014238->NP_055053619109forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs11655061 maps exactly once on NCBI human chromosome 17
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
17NW_001838430.2451716022089161minusCalt_assembly_8HuRefHuRefview500
17NW_926750.161041822743948plusGalt_assembly_1CeleraCeleraview500
17NT_010799.1461910922906242plusGref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010799
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss16747849HapMap-CEUEuropean 120IG 0.250 0.483 0.267 1.000 0.492 0.508
HapMap-HCBAsian 90IG 0.200 0.489 0.311 1.000 0.444 0.556
HapMap-JPTAsian 90IG 0.089 0.511 0.400 0.403 0.344 0.656
HapMap-YRISub-Saharan African 120IG 0.083 0.367 0.550 0.655 0.267 0.733

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.474+/-0.11127021000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwithHapMapFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .