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Status
Public on Mar 19, 2007
Title
Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mm_ENTREZG_8]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism(s)
Mus musculus
Manufacturer
Affymetrix
Manufacture protocol
This identical to GPL1261 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below.
Description
CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. After probe sequences are BLASTed against the latest UniGene Build and genome sequence, a series of filtering and grouping criteria are applied for different CDF files. For the CDF file based on Entrez Gene: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon; For detailed description please see the paper.
Web link
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp
Citation(s)
16284200
Submission date
Mar 16, 2007
Contact name
Robert Ivanek
E-mail(s)
ivanek@img.cas.cz
Phone
+420 241 063 148
Fax
+420 224 310 955
URL
http://www.img.cas.cz
Organization name
Institute of Molecular Genetics
Street address
Videnska 1083
City
Prague 4
ZIP/Postal code
CZ-14220
Country
Czech Republic
Samples (21)
GSM176187 , GSM176188 , GSM176189 , GSM176190 , GSM176191 , GSM176192
GSM176193 ,
GSM176194 ,
GSM176195 ,
GSM176196 ,
GSM176197 ,
GSM176198 ,
GSM176199 ,
GSM176200 ,
GSM176201 ,
GSM176202 ,
GSM176203 ,
GSM176204 ,
GSM285057 ,
GSM285058 ,
GSM285059
Series (2)
GSE7306
Chromosomal rearrangement interferes with meiotic X-chromosome inactivation
GSE11295
PPARĪ³ activation promotes infiltration of alternatively activated macrophages into adipose tissue.
Relations
Alternative to
GPL1261 (Alternative CDF [official])
Data table header descriptions
ID
ORF
EntrezGeneId
Description
SPOT_ID
control probes
Data table
ID
ORF
Description
SPOT_ID
100012_at
100012
oogenesin 3
100017_at
100017
low density lipoprotein receptor adaptor protein 1
100019_at
100019
midasin homolog (yeast)
100061_at
100061
leucine rich repeat containing 19
100066_at
100066
cytochrome P450, family 2, subfamily j, polypeptide 11
100072_at
100072
calmodulin binding transcription activator 1
100087_at
100087
KTI12 homolog, chromatin associated (S. cerevisiae)
100088_at
100088
regulator of chromosome condensation 1
100090_at
100090
GLI-Kruppel family member HKR3
100102_at
100102
proprotein convertase subtilisin/kexin type 9
100121_at
100121
tudor domain containing 7
100129_at
100129
G protein-coupled receptor 153
100163_at
100163
platelet-activating factor acetylhydrolase 2
100169_at
100169
phosphatase and actin regulator 4
100177_at
100177
zinc finger, MYM-type 6
100198_at
100198
hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
100201_at
100201
transmembrane protein 64
100206_at
100206
ADP-ribosylhydrolase like 2
100210_at
100210
ATP binding domain 1 family, member B
100213_at
100213
RUN and SH3 domain containing 2
Total number of rows: 16642 Table truncated, full table size 835 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL5008_Mm_ENTREZG_8.cdf.gz
7.1 Mb
(ftp) (http)
CDF