NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs356688          
refSNP ID: rs356688
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
NM_000136.2:c.345+23092T>A
NT_008470.18:g.5301044A>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss16286982 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs356688 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss452906KWOK|OVLP-000621-382481fwd/BA/Taaaaaaagaaatcacaaggaaaattagtaattttttttaactaaatttaaataaaaacac06/30/0010/10/0379Genomic99 %
ss573292SC_JCM|AL157384.8_113731rev/TA/Tgtgtttttatttaaatttagttaaaaaaaattactaattttccttgtgatttcttttttt07/12/0010/10/0380Genomicunknown
ss919972KWOK|OVLP-000804-239454fwd/BA/Taaaaaaagaaatcacaaggaaaattagtaattttttttaactaaatttaaataaaaacac09/01/0010/10/03111Genomic99 %
ss920793KWOK|OVLP-000804-243325fwd/BA/Taaaaaaagaaatcacaaggaaaattagtaattttttttaactaaatttaaataaaaacac09/01/0010/10/03111Genomic99 %
ss1806483KWOK|OVLP-000925-688105fwd/BA/Taaaaaaagaaatcacaaggaaaattagtaattttttttaactaaatttaaataaaaacac10/05/0010/10/03111Genomic99 %
ss1806889KWOK|OVLP-000925-691014fwd/BA/Taaaaaaagaaatcacaaggaaaattagtaattttttttaactaaatttaaataaaaacac10/05/0010/10/03111Genomic99 %
ss16286982SC_SNP|NT_008476.14_5301044fwd/BA/Taaaaaaagaaatcacaaggaaaattagtaattttttttaactaaatttaaataaaaacac11/18/0311/22/03120Genomicunknown
ss43489489ABI|hCV3253395fwd/A/Taaaaaaagaaatcacaaggaaaattagtaattttttttaactaaatttaaataaaaacac07/18/0507/18/05126Genomicunknown
ss84668849HGSV|Cor18517_SNV_20070510.chr9_95059394fwd/A/Taaaaaaagaaatcacaaggaaaattagtaattttttttaactaaatttaaataaaaacac12/06/0712/07/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs356688|allelePos=2000|totalLen=3497|taxid=9606|snpclass=1|alleles='A/T'|mol=Genomic|build=130
 TCTGAGTGGG GTAGTATGAC TGCTCCTGCT AAGAGAGTAC AGTATAACTC TGTGATTTCT
 GAGGATAGGT TACAAAAGGC TATGTAGCTT CTGCCTGGTT CTCTTGGGGA CACTCTCATG
 AAACCCAGCC ATTATGCTGT TAGGAAGCCA AGAAGCCCCA CGTAGAGGCC ATGGGTTCCA
 GATGACAGCC TCATTTGAGG AACCAGCTGA CAGTCGGTAT CAACTAACGT CAGGAAAACT
 AGGGAGTAAG CACGGAGGTG ACTCCAGCCC CAGATGCTGA ATCCTGCCAG CATTCAAGTC
 TTCCCAGTGG AGGCCAATTA CATTGTGTAG TGGAGTTCCT AACCCAGAAT CTAAAAAGGC
 ATTAAAAGGA TTATTATTTT ATTCACTAAC TTTGGAATGG CTTGTTACTT AACAACAGCA
 ACTATTATTA AAGATTTAAA CCAGCCATAT CAATAATTAT ATTACATAGA AATGTTTTAA
 ATATTAGATG AAAAAGCAGC AGGTGTCACA TTAGATAAAA CCAAAAACTA TACGCTACCT
 ATGAAAAACC CACTTTAAAG ACACAAGTAA GTTAAAAGTA AAAGGATGTA CCATGCAAAC
 AGTAATCAAA AGAAAACTGT TATTGTTGTT ACTGTTGTTT TAATGTCAGA CAAAGCAGAC
 TTAAAAACAA AAAGTATTAC CAGGAAAAAA GAAAGATTTC ACAATGATAA AAGGGTCAAT
 TCATCAAGAA GATGTAACAA TTCTAAATGT GTTTATACAC AGTTACAGAG CTTAGAAATA
 AATGAAACAA AAAATGACAG AATTGAAAAT AGCAATTAAT AACTCATAAT TGGAGGCTTC
 AACATCATCT CTTAGGAGAT TGATAAAAAT AGACAGAAAA TCAGAAGACT ATAGGGACCT
 GAACAACACT ATTATTGGTA GACAATTCTC CATGGGTCTG CTGCATTTCT GCTTTTGCTC
 CAGACTATAT TTTCAATGAT ATTTGTACAG CCAACCCCTT TGGAAAAGAG ACAGGGTCTC
 ATTCAGAAGA AATGGGACAG GTTTGCTAAC TGTCCAACAA TAAGAATAAT GTCTTCCTCC
 ACGAAAAAGG AAGTTTGTTT GCAGCCTATT ATAAAAGATT TGAGCAATAC AAGCTGTAGG
 TTCCTCAGCT GTGACACAAA CCCACATGTG CACAGTATTT ATCTAGGACT CTCTGCATCT
 CTCCCATAGG TCTTCTGGGA CCAGAGGAGC AGATACAAAC ACCAAACTCT TGTGGCTTGC
 TGTGCTGTGA TTATAAAATC CTTTGTCTCT GACCCAGAAG TCCTATGTCT TCAGCCAGCA
 TGCATGAAAC AGTGGCAGTC TAACTTGTTA CCTTCCAAAA AGGAAGGAAA AAAAAATCTC
 AGACCGGCCA CAGTCTTCGA TAATTATCAA CCATCTTAAC CCAACTGACA TTTAGAAAAT
 ATTCCACCCA ACATTATTTT GAAGTTTACA TGGAACAATT ACTGAAACAA ACCAAATTCA
 GAACCATAAA ACAATTCTCA GTGAATTTGA GAAGACTGAA ATAATACAAA TATATAATCA
 GACACAACAA AATTAAATTA TACATCAGTA ACAGAAAGAT ATGTGGAAAA GCCTCAAATA
 TTTGTTAATT TAAAAACACA TTTCTAGGCC GGGCCTGGGG GCTCACACCT GTAATCCCAG
 CACTTTGGGA GGCCGAGGTG GGTGGATCAT GAGGTCAGGA GATCGAGACC ATCCTGCGTA
 ACATGGTGAA ACACCATCTC TACCAAAAAT ACAAAACATT AGCCGGGTGT GGTGGTGGGC
 GCCTGTGGTC CCAGCTACTC GGGAGGCTGA GGCAGGAGAA TGGCATGAAC CCAGGAGGCA
 GAGGTTGCAG TGAGCCAGAT TGTGCCACTG CACTCCAGCC TGGGTGACGG TGAGACTCCA
 TCTCAAAAAA AAAACAAACA AAAAACACAT TTCTAAATAA CCAATGGTCA AAAAAAGAAA
 TCACAAGGAA AATTAGTAA
 W
 TTTTTTTTAA CTAAATTTAA ATAAAAACAC AATGTATCAA AATTCAGTGG ATGCACATAA
 AGCAGCGACT GAGGGAAATT TATAGCTTTA AGTCTCATGG TGTAAATAAA GAAAGGTCTC
 TGAGCAAGTA TTTGTCACCA GCTTAAGAGC TAGGGTAAGA AAGATCAAAT TAAATATAAA
 GTAAGTAGAA GAAAGAAAAT CATAAAGAGC AAAAATCAAA GACATCACAA ACAATAGATA
 AAATCAATAA ACCCAAAACC TGGCTATTTA AAAAAATTTA ATTTGTTAAA CCGTTGCTCA
 GTTCATGGGG GAGAAAAAAG GGAGAAGACA CAAATTCCAA TGTCAGAAAT AAAAGAGAAG
 ACATCATTAC ATATCCTACA GATACTAAAA GCATTATTAA AGGATGTTAT ATCAATAAAC
 TTGACAACAA AGATGGAATA GGTAATTCTT TAAATGACAA AAATTATTAA AACCGACTCA
 AGAAGAAACA GAGAACCTGA ATAGAAACTA CCTATTTTAA AAATAAGGAA CCTGCAATTT
 AAAAACTTCC CCCAAAGAAA ATCTGAGGAC CATAAAGTTT CACTAGTGAC TTCAATTAAA
 CATTTAAGGA AGAAAAATAA GGGCAGGCCG AGTGTGGTGG CCCATGCCTG TTATCCTAGC
 ACTTTGGGAG GCTAAGGTGG GAGAATCGCT TGAGACTAGG AGTTCGAGAC TAGCCTGGGC
 AACACAGGAA AACCTCGTTG CCATAAAAAA TTTCAAAATT AGCCAGCTGC AGAGGTACAT
 GCCTGTAGTC CTAGCTACAC AGTAGGCTGA GGTGGGAGGA CTGCTTGAGC CCAGGAGGTC
 AAGGCTGCAG TGAGCTATGA TTGGCCACTG CACTCCAGCC TGCGCAACAG AAGGAGACCC
 TGTCTCAAAA AAATAATAAT AAGAGTGAAT TACCCTGATG TCGAAACAAA GACACTGTAA
 GAAAACAACA GATCAATATT TCTCATGAAC ATAGACATAA AAACCCTTAA CATTTTAGCA
 TATAGCAGCA ATATATTAAA AAGATAACAT TACATGACTA AATGGGGACC ATCCCAGTAA
 TGAAAAGTAG GTTTAACATT AAAAATCAGT GACTGCATTC TCCATACTAG AATAGTATAA
 AGAAGAAAAA CTATATGATC ATCTCAATAG ATGCAGAAAA AACATTTAAA AATAGTCAGC
 ATTTGATAGG GTGATGTTAG CTAGATGGCA GACTAGGATG GCCCTCTCCG TTCATCCATG
 GAAACATCAA ACAAACAACT ACATGCTGAT TAAAATGGTT TTGTGGAAGC TGTGGAAACA
 GGTCAAGGAT ATGCAGCAAC CAAGCAAACA CCCAATCAAG AAAAAGCCAC ACTGAAAACG
 ATAGGAAATG TCATGCTGTG CTTGCTTGCA CTTGCCCTAG CCTTTCCCTG GCATAGCATG
 GGAGAGACAA AGAGACCCAA TTCCTAGTTT TCTCCCTCAT TACAGAGAAA AGTATGT

  GeneView back to top
GeneView via analysis of contig annotation: FANCC Fanconi anemia, complementation group C
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_008470->NM_000136
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_008470->NM_000136->NP_0001275301044reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs356688 maps exactly once on NCBI human chromosome 9
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
9NW_001839235.2177703267589191minusTalt_assembly_8HuRefHuRefview1999
9NW_924506.179056768420874plusAalt_assembly_1CeleraCeleraview1999
9NT_008470.18530104497019660plusAref_assemblyreferencereferenceview1999

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_008476 AC016667 AL157384.8 AL354893.10 AL354893.12
dbSNP Blast Analysis
GenBank HTGS Finished:
AL157384.8

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
with2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .