Reference SNP(refSNP) Cluster Report: rs11587294

Reference SNP(refSNP) Cluster Report: rs11587294

refSNP ID: rs11587294
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	120/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	T
Clinical Association:	unknown

HGVS Names
NM_005427.1:c.187-1492T>C
NT_004321.17:g.938401T>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss16441976 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11587294 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss16441976	CSHL-HAPMAP\|CSHL-HuAA-200402.chr1.NT_004321.15_929396		fwd/B	C/T	gagggggcaggctggtgggagggaagagtg	gctcacagcacaccacagcttctctaaaga	02/17/04	03/04/04	120	Genomic			unknown

Fasta sequence (Legend)

 CCTCAGTGGA TGTGTGTCCT AGGACCTGCA GAGCCGAGGG CCTCTGGGTC ACTAAACCCA
 ACCACCTCTG ATGGAGAAGG CTGAGGTGCA GGAAGGGGCT GAGCCTGGGA GTCCCGGCGA
 GGCCCCTGCA CCCTCCTGTG CGGGCAGTGC ACGTTTTGTT TTTTGGATTG GAGGGGGCAG
 GCTGGTGGGA GGGAAGAGTG
 Y
 GCTCACAGCA CACCACAGCT TCTCTAAAGA GGGACACAGG GCAGAATGAc cgccccccgc
 ccccggcccg ccTCCGCCTG GCTCTGCCCC TTCCTGCCCT GCAATCCCAG TTCACGGTCT
 GGGGGTCTCA GCCTGCACCT TGCTGACTGC TGGTGACCTT TGTGCCGTCT GCTGGGGCCG
 CTAGATCACT GGGGTCAATC GTTTCCCCAG CCCCATAGct cagtttcctc atctgtaaaa
 tggggacaat catggtgccc accgcaGGCC TGGGGAGAGG GGTAATAGGG ACAATCACGG
 TGCCCGCCGC AGGCCCGGGG AGGGGGGTAA

GeneView

GeneView via analysis of contig annotation: TP73 tumor protein p73

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_004321->NM_005427

function

HuRef

NW_001838618->NM_005427

function

Celera

NW_923572->NM_005427

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_004321->NM_005427->NP_005418	938401	forward	intron

HuRef	NW_001838618->NM_005427->NP_005418	220695	reverse	intron

Celera	NW_923572->NM_005427->NP_005418	445985	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs11587294 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_923572.1	445985	2876659	plus	T	alt_assembly_1	Celera	Celera	view	200
1	NW_001838618.2	220695	2918447	minus	A	alt_assembly_8	HuRef	HuRef	view	200
1	NT_004321.17	938401	3612481	plus	T	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_004321

dbSNP Blast Analysis
GenBank HTGS Finished:
AL136528.11

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .