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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs7567444          
refSNP ID: rs7567444
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss11451971 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7567444 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss11451971WI_SSAHASNP|chr2.NT_022135.13_571181byFreqfwd/BC/Ttcttttagcacctgaacacatttctggcttcatagtttctaatgaaaatctgctgccaat07/03/0304/07/04116Genomicunknown
ss24310536PERLEGEN|afd4458088byFreqfwd/BC/Ttcttttagcacctgaacacatttctggcttcatagtttctaatgaaaatctgctgccaat08/10/0409/13/04123Genomicunknown
ss68370103CSHL-HAPMAP|perlegen:assay:24708.4458088:1byFreqfwd/BC/Ttcttttagcacctgaacacatttctggcttcatagtttctaatgaaaatctgctgccaat01/11/0701/16/07127NAunknown
ss75188492ILLUMINA|ILMN_Human_1M_rs7567444fwd/BC/Ttcttttagcacctgaacacatttctggcttcatagtttctaatgaaaatctgctgccaat08/28/0708/29/07129Genomicunknown
ss82159581HGSV|Cor19240_SNV_20070510.chr2_111579669fwd/BC/Ttcttttagcacctgaacacatttctggcttcatagtttctaatgaaaatctgctgccaat11/30/0712/02/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7567444|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 CAACAAATCT TTCTGGGATT TTGATAGGTA TTGCATTAAA CCTGTAAGTT AATTTGAGGA
 GAAATTTCAT CTTACTGTGC TGAATCTTCC AGTCTCTGAA TATGGTATGT CTCTCTACTT
 ATAGAGATCT ACACTGATTT ATTTCGTCAG CATTTTACTG TGTTCAGCAC ACAAGTCCTA
 GTCTTCTACA TGCTTTGTTG GATTACATCT ATGATTGTAA ATGGTATTGC ATATTTAATT
 TTAGTGTCTG CATATCCATT ACTATTATAT GGAAATAAAA CTATTTTTAT ATGTTTTATA
 TATTTTATAT GTTTTATCAA CATATATTTT ATATGTTATC TTTTATCCTA CGATCTTGCT
 CAACTTGTTG AATCTAGAAG TTCTTATAGA TTCCTTGGAA TTTGCCATAT AGACAAACAT
 GTTATCTGCA AATAGAGACA GTATTTCACT GTCTGTGTTG ACAATTCTTT TCTTTTAGCA
 CCTGAACACA TTTCTGGCTT
 Y
 CATAGTTTCT AATGAAAATC TGCTGCCAAT TGTTTTTTTC TCCCTTGTAA GTAAAATGTC
 ATTTCTCTTT CTCTGCTTTT AAGATTAAAA ACTATTTATG ATGCTATTTA TGATGTGCCT
 TTGAATAAAT TTCTTTGGAT TTATGCTGTT TGGGGTGGGC TCAGCTTCGT GAATTTGTTG
 CTTTATCTCT TTTGCCAAAT CTGGGGAGTT TTCAGCCAAT TTTTCAAGTA CTTTTCTGCC
 CAGCCCACTT CCTCTTCTCT TTTCAGAACA CTGATGACAC TTAGGTTAAA TCATTTTTTA
 AAAATAATTA CACACGTTCC TGACCCTCTG TTCATTATAT ATTCAGTCCA TTTTCTGTCT
 ATTATTGAGG TTCAGTAATT TTATTGTGCC ATCTTTCAGT TCACCAATTC CTTCCACTGT
 CCCCTCCATT TTGCTGTCAA AACCATCCAC TGAGTTTTTA ATTTGGGTCA TTGTACTTTT
 CAGTTCTATA ATTTCTATTT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs7567444 maps exactly once on NCBI human chromosome 2
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
2NW_001838832.1498740104742586plusTalt_assembly_8HuRefHuRefview500
2NW_921407.1487136105514033plusTalt_assembly_1CeleraCeleraview500
2NT_022135.15571361111579909plusTref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_022135
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceC/C
C/T
T/T
HWPC
T
ss11451971HapMap-CEUEuropean 120IG 0.317 0.533 0.150 0.479 0.583 0.417
HapMap-HCBAsian 90IG 0.267 0.556 0.178 0.439 0.544 0.456
HapMap-JPTAsian 88IG 0.295 0.591 0.114 0.200 0.591 0.409
HapMap-YRISub-Saharan African 120IG 0.700 0.283 0.017 0.655 0.842 0.158
ss24310536AFD_EUR_PANELEuropean 46IG 0.174 0.696 0.130 0.100 0.522 0.478
AFD_AFR_PANELAfrican American 46IG 0.478 0.435 0.087 1.000 0.696 0.304
AFD_CHN_PANELAsian 48IG 0.542 0.417 0.042 0.655 0.750 0.250

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
0.454+/-0.14533226090

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreq
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .