Handout     NAR 2006 Paper     NAR 2002 Paper     FAQ     MIAME     Email GEO  
   NCBI > GEO > Accession Display Not logged in | Login
GEO help: Mouse over screen elements for information.
Scope:    Format:    Amount:   GEO accession:    Go
Sample GSM140952 Query DataSets for GSM140952
Status Public on Oct 21, 2006
Title Microarray I vs J from Loss of the RNA-binding protein Kep1
Sample type RNA
 
Channel 1
Source Name wild-type w1118 male RNA
Organism(s) Drosophila melanogaster
Characteristics 3-4 day old heads
Extracted molecule total RNA
Extraction protocol Trizol followed by QIAGEN column
Label Cy3
Label protocol Labelling carried out at the Canadian Drosophila Microarray Center, Neal et al 2003 Genome 46, 879-892
 
Channel 2
Source Name kep1-/kep1- male RNA
Organism(s) Drosophila melanogaster
Characteristics 3-4 day old heads
Extracted molecule total RNA
Extraction protocol Trizol followed by QIAGEN column
Label Cy5
Label protocol Labelling carried out at the Canadian Drosophila Microarray Center, Neal et al 2003 Genome 46, 879-892
 
 
Hybridization protocol Canadian Drosophila Microarray Center, Neal et al 2003 Genome 46, 879-892
Scan protocol Canadian Drosophila Microarray Center, Neal et al 2003 Genome 46, 879-892
Description Canadian Drosophila Microarray Center
Data processing Canadian Drosophila Microarray Center
 
Submission date Oct 19, 2006
Contact name Marco Di Fruscio
E-mail(s) marco.di.fruscio@usherbrooke.ca
Phone 819-821-8000 x 61092
Fax 819-821-8049
Organization name Université de Sherbrooke
Department Biologie
Street address 2500 boul. Université
City Sherbrooke
State/province Quebec
ZIP/Postal code J1K 2R1
Country Canada
 
Platform ID GPL1467
Series (1)
GSE6086 Loss of the RNA-binding protein Kep1 leads to cytokinesis defects and behavioural abnormalities in male Drosophila.

Data table header descriptions
ID_REF
Array Row Array Row
Array Column Array Column
Row Row
Column Column
ch1 Ratio Ch1/Ch1
ch1 Percent Percent of total signal measured in channel 1
VALUE log2 of PRE_VALUE
ch2 Percent Percent of total signal measured in channel 2
Ignore Filter Filter
PRE_VALUE Ch2/Ch1

Data table
ID_REF Array Row Array Column Row Column ch1 Ratio ch1 Percent VALUE ch2 Percent Ignore Filter PRE_VALUE
1 1 1 1 1 1 47.141707 0.1651 52.858293 1 1.121264
2 1 1 1 2 1 50.076308 -0.0044 49.923692 1 0.996952
3 1 1 1 3 1 44.692835 0.3074 55.307165 1 1.237495
4 1 1 1 4 1 45.098972 0.2837 54.901028 1 1.217345
5 1 1 1 5 1 45.144464 0.2811 54.855536 1 1.215111
6 1 1 1 6 1 44.77385 0.3027 55.22615 1 1.233447
7 1 1 1 7 1 46.553277 0.1992 53.446723 1 1.148076
8 1 1 1 8 1 45.81948 0.2418 54.18052 1 1.182478
9 1 1 1 9 1 51.836974 -0.1061 48.163026 1 0.929125
10 1 1 1 10 1 54.973041 -0.2879 45.026959 1 0.819073
11 1 1 1 11 1 50.783138 -0.0452 49.216862 1 0.969158
12 1 1 1 12 1 47.154783 0.1644 52.845217 1 1.120676
13 1 1 1 13 1 44.343466 0.3278 55.656534 1 1.255124
14 1 1 1 14 1 47.394816 0.1505 52.605184 1 1.109935
15 1 1 1 15 1 74.141677 -1.5197 25.858323 1 0.348769
16 1 1 1 16 1 75.986744 -1.6619 24.013256 1 0.316019
17 1 1 1 17 1 48.227392 0.1023 51.772608 1 1.07351
18 1 1 1 18 1 49.78705 0.0123 50.21295 1 1.008554
19 1 1 1 19 1 48.280428 0.0993 51.719572 1 1.071233
20 1 1 1 20 1 50.720088 -0.0416 49.279912 1 0.971605

Total number of rows: 27648

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM140952.xls.gz 5.4 Mb (ftp)(http) XLS
GSM140952_kep1_Cy5_ch2.Tif.gz 3.4 Mb (ftp)(http) TIFF
GSM140952_w1118_Cy3_ch1.Tif.gz 2.9 Mb (ftp)(http) TIFF
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Section 508 |
NCBI Home NCBI Search NCBI SiteMap