Vibrio cholerae O1 biovar eltor str. N16961 chromosome I

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217561-217660 (1-100) 217661-217760 (101-200) 217761-217860 (201-300) 217861-217960 (301-400) 217961-218060 (401-500)
218061-218160 (501-600) 218161-218260 (601-700) 218261-218360 (701-800) 218361-218460 (801-900) 218461-218560 (901-1000)
218561-218660 (1001-1100) 218661-218760 (1101-1200) 218761-218860 (1201-1300) 218861-218960 (1301-1400) 218961-219060 (1401-1500)
219061-219160 (1501-1600) 219161-219260 (1601-1700) 219261-219360 (1701-1800) 219361-219460 (1801-1900) 219461-219560 (1901-2000)
219561-219660 (2001-2100) 219661-219760 (2101-2200) [219761-219860 (2201-2300)] 219861-219960 (2301-2400) 219961-220060 (2401-2500)
220061-220160 (2501-2600) 220161-220260 (2601-2700) 220261-220302 (2701-2742)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
219761 hypothetical VC2229 hypothetical protein
identified by Glimmer2; putative
genbank 15642227 NP_231860.1 281 2382364 2383209
219762 hypothetical VC2230 phosphoheptose isomerase
catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate
genbank 15642228 NP_231861.1 191 2383272 2383847
219763 fadE hypothetical VC2231 acyl-CoA dehydrogenase
functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
genbank 15642229 NP_231862.1 814 2384165 2386609
219764 hypothetical VC2232 hypothetical protein
identified by Glimmer2; putative
genbank 15642230 NP_231863.1 419 2386756 2388015
219765 hypothetical VC2233 DNA polymerase III subunit epsilon
3'-5' exonuclease of DNA polymerase III
genbank 15642231 NP_231864.1 247 2388024 2388767
219766 hypothetical VC2234 ribonuclease H
An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
genbank 15642232 NP_231865.1 156 2388824 2389294
219767 hypothetical VC2235 hypothetical protein
identified by Glimmer2; putative
genbank 15642233 NP_231866.1 245 2389365 2390102
219768 hypothetical VC2236 hydroxyacylglutathione hydrolase GloB, putative
similar to PID:1208973 GB:U00096 SP:Q47677 PID:1552782 PID:1786406; identified by sequence similarity; putative
genbank 15642234 NP_231867.1 252 2390140 2390898
219769 hypothetical VC2237 membrane-bound lytic murein transglycosylase D
similar to SP:P23931 GB:X60739 PID:1208972 PID:581068 GB:U00096; identified by sequence similarity; putative
genbank 15642235 NP_231868.1 532 2390970 2392568
219770 hypothetical VC2238 hypothetical protein
identified by Glimmer2; putative
genbank 15642236 NP_231869.1 281 2392585 2393430
219771 hypothetical VC2239 nitrogen regulatory protein P-II
similar to SP:P11671 PID:43806; identified by sequence similarity; putative
genbank 15642237 NP_231870.1 114 2393498 2393842
219772 hypothetical VC2240 decarboxylase
similar to GB:AL009126; identified by sequence similarity; putative
genbank 15642238 NP_231871.1 174 2393996 2394520
219773 hypothetical VC2241 cytochrome c554
similar to SP:P00105; identified by sequence similarity; putative
genbank 15642239 NP_231872.1 107 2394897 2395220
219774 hypothetical VC2242 mesJ protein
similar to GB:U00096 PID:1552765 PID:1786386 PID:971394; identified by sequence similarity; putative
genbank 15642240 NP_231873.1 440 2395256 2396578
219775 hypothetical VC2243 hypothetical protein
identified by Glimmer2; putative
genbank 15642241 NP_231874.1 34 2396546 2396650
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
219776 hypothetical VC2244 acetyl-CoA carboxylase alpha subunit
Catalyzes the carboxylation of acetyl-CoA to malonyl-CoA
genbank 15642242 NP_231875.1 319 2396718 2397677
219777 hypothetical VC2245 DNA polymerase III subunit alpha
main replicative polymerase
genbank 15642243 NP_231876.1 1164 2397732 2401226
219778 rnhB hypothetical VC2246 ribonuclease HII
RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
genbank 15642244 NP_231877.1 206 2401250 2401870
219779 lpxB hypothetical VC2247 lipid-A-disaccharide synthase
catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
genbank 15642245 NP_231878.1 379 2401895 2403034
219780 hypothetical VC2248 UDP-N-acetylglucosamine acyltransferase
catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
genbank 15642246 NP_231879.1 262 2403195 2403983
219781 fabZ hypothetical VC2249 (3R)-hydroxymyristoyl ACP dehydratase
in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
genbank 15642247 NP_231880.1 153 2403985 2404446
219782 lpxD hypothetical VC2250 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
genbank 15642248 NP_231881.1 351 2404522 2405577
219783 hypothetical VC2251 outer membrane protein OmpH
similar to PID:1935023; identified by sequence similarity; putative
genbank 15642249 NP_231882.1 169 2405587 2406096
219784 hypothetical VC2252 surface antigen
similar to GB:U00096 SP:P39170 PID:1552754 PID:1786374; identified by sequence similarity; putative
genbank 15642250 NP_231883.1 803 2406111 2408522
219785 hypothetical VC2253 hypothetical protein
identified by Glimmer2; putative
genbank 15642251 NP_231884.1 452 2408571 2409929
219786 hypothetical VC2254 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
genbank 15642252 NP_231885.1 402 2409926 2411134
219787 hypothetical VC2255 phosphatidate cytidylyltransferase
similar to GB:L42023 SP:P44937 PID:1006039 PID:1221024 PID:1205166; identified by sequence similarity; putative
genbank 15642253 NP_231886.1 280 2411183 2412025
219788 hypothetical VC2256 undecaprenyl diphosphate synthase
similar to GB:L42023 SP:P44938 PID:1006041 PID:1221025 PID:1205167; identified by sequence similarity; putative
genbank 15642254 NP_231887.1 256 2412043 2412813
219789 frr hypothetical VC2257 ribosome releasing factor
Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release facto
genbank 15642255 NP_231888.1 185 2412887 2413444
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
219790 hypothetical VC2258 uridylate kinase
catalyzes the formation of UDP from UMP
genbank 15642256 NP_231889.1 243 2413498 2414229
219791 tsf hypothetical VC2259 elongation factor Ts
EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
genbank 15642257 NP_231890.1 280 2414417 2415259
219792 hypothetical VC2260 30S ribosomal protein S2
Essential for binding of S1 to the small ribosomal subunit
genbank 15642258 NP_231891.1 242 2415391 2416119
219793 hypothetical VC2261 methionine aminopeptidase
catalyzes the removal of N-terminal amino acids from peptides and arylamides
genbank 15642259 NP_231892.1 280 2416460 2417302
219794 hypothetical VC2262 PII uridylyl-transferase
catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
genbank 15642260 NP_231893.1 881 2417392 2420037
219795 hypothetical VC2263 hypothetical protein
identified by Glimmer2; putative
genbank 15642261 NP_231894.1 32 2420112 2420210
219796 hypothetical VC2264 hypothetical protein
identified by Glimmer2; putative
genbank 15642262 NP_231895.1 137 2420283 2420696
219797 hypothetical VC2265 phosphatidylglycerophosphatase A
similar to GB:U00096 PID:1773102 PID:1786620 PID:2329841; identified by sequence similarity; putative
genbank 15642263 NP_231896.1 169 2420737 2421246
219798 hypothetical VC2266 thiamine monophosphate kinase
catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
genbank 15642264 NP_231897.1 334 2421243 2422247
219799 nusB hypothetical VC2267 transcription antitermination protein NusB
Regulates rRNA biosynthesis by transcriptional antitermination
genbank 15642265 NP_231898.1 156 2422308 2422778
219800 ribH hypothetical VC2268 riboflavin synthase subunit beta
RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-
genbank 15642266 NP_231899.1 173 2422778 2423299
219801 hypothetical VC2269 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
similar to GB:M90094 SP:Q02008 PID:150708; identified by sequence similarity; putative
genbank 15642267 NP_231900.1 369 2423513 2424622
219802 hypothetical VC2270 riboflavin synthase subunit alpha
catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
genbank 15642268 NP_231901.1 217 2424663 2425316
219803 hypothetical VC2271 riboflavin-specific deaminase
similar to GB:L42023 SP:P44326 PID:1006089 PID:1221052 PID:1205192; identified by sequence similarity; putative
genbank 15642269 NP_231902.1 367 2425321 2426424
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
219804 hypothetical VC2272 hypothetical protein
identified by Glimmer2; putative
genbank 15642270 NP_231903.1 156 2426450 2426920
219805 hypothetical VC2273 gamma-glutamyl phosphate reductase
catalyzes the reduction of L-gamma-glutamyl 5-phosphate to form L-glutamate 5-semialdehyde in proline biosynthesis
genbank 15642271 NP_231904.1 417 2426999 2428252
219806 hypothetical VC2274 gamma-glutamyl kinase
catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
genbank 15642272 NP_231905.1 396 2428261 2429451
219807 hypothetical VC2275 transcriptional regulator Crl
similar to PID:1208986 PID:41154 PID:551809 GB:U00096 PID:1552808; identified by sequence similarity; putative
genbank 15642273 NP_231906.1 129 2429515 2429904
219808 hypothetical VC2276 hypothetical protein
identified by Glimmer2; putative
genbank 15642274 NP_231907.1 415 2430038 2431285
219809 hypothetical VC2277 xanthine phosphoribosyltransferase
Catalyses the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
genbank 15642275 NP_231908.1 154 2431382 2431846
219810 hypothetical VC2278 hypothetical protein
identified by Glimmer2; putative
genbank 15642276 NP_231909.1 430 2431884 2433176
219811 hypothetical VC2279 aminoacyl-histidine dipeptidase
similar to GB:M34034 SP:P15288 GB:X14790 PID:1208983 PID:147140; identified by sequence similarity; putative
genbank 15642277 NP_231910.1 534 2433923 2435527
219812 hypothetical VC2280 hypothetical protein
identified by Glimmer2; putative
genbank 15642278 NP_231911.1 147 2435761 2436204
219813 hypothetical VC2281 ribosomal protein S6 modification protein
similar to SP:P17116 GB:X15859 PID:42747 GB:U00096 PID:1651386; identified by sequence similarity; putative
genbank 15642279 NP_231912.1 301 2436201 2437106
219814 hypothetical VC2282 hypothetical protein
identified by Glimmer2; putative
genbank 15642280 NP_231913.1 362 2437066 2438154
219815 hypothetical VC2283 sodium-dependent transporter
similar to GB:AL009126; identified by sequence similarity; putative
genbank 15642281 NP_231914.1 451 2438223 2439578
219816 hypothetical VC2284 hypothetical protein
identified by Glimmer2; putative
genbank 15642282 NP_231915.1 33 2439637 2439738
219817 hypothetical VC2285 GGDEF family protein
similar to GP:2529422; identified by sequence similarity; putative
genbank 15642283 NP_231916.1 505 2439735 2441252
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
219818 hypothetical VC2286 hypothetical protein
identified by Glimmer2; putative
genbank 15642284 NP_231917.1 256 2441316 2442086
219819 hypothetical VC2287 DNA polymerase IV
Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits
genbank 15642285 NP_231918.1 360 2442332 2443414
219820 hypothetical VC2288 hypothetical protein
identified by Glimmer2; putative
genbank 15642286 NP_231919.1 77 2443523 2443756
219821 hypothetical VC2289 thiamin biosynthesis lipoprotein ApbE
similar to GB:L42023 SP:P44550 PID:1003244 PID:1222087 PID:1204428; identified by sequence similarity; putative
genbank 15642287 NP_231920.1 367 2443773 2444876
219822 hypothetical VC2290 Na(+)-translocating NADH-quinone reductase subunit F
uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
genbank 15642288 NP_231921.1 408 2444923 2446149
219823 hypothetical VC2291 Na(+)-translocating NADH-quinone reductase subunit E
similar to PID:893416 PID:893415; identified by sequence similarity; putative
genbank 15642289 NP_231922.1 198 2446183 2446779
219824 hypothetical VC2292 NADH-ubiquinone oxidoreductase
Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis
genbank 15642290 NP_231923.1 210 2446787 2447419
219825 hypothetical VC2293 Na(+)-translocating NADH-quinone reductase subunit C
uses the energy from reduction ofubiquinone-1 to ubiquinol to moveNa(+) ions from the cytoplasm to theperiplasm
genbank 15642291 NP_231924.1 257 2447419 2448192
219826 hypothetical VC2294 Na(+)-translocating NADH-quinone reductase subunit B
uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
genbank 15642292 NP_231925.1 427 2448179 2449462
219827 hypothetical VC2295 Na(+)-translocating NADH-quinone reductase subunit A
uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
genbank 15642293 NP_231926.1 462 2449432 2450820
219828 hypothetical VC2296 bolA protein
similar to PID:663269; identified by sequence similarity; putative
genbank 15642294 NP_231927.1 106 2451257 2451577
219829 hypothetical VC2297 hypothetical protein
identified by Glimmer2; putative
genbank 15642295 NP_231928.1 416 2451622 2452872
219830 hypothetical VC2298 lipoprotein, putative
similar to GB:L42023 SP:P43782 PID:1003225 PID:1222077 PID:644853; identified by sequence similarity; putative
genbank 15642296 NP_231929.1 206 2452869 2453489
219831 hypothetical VC2299 peptidyl-prolyl cis-trans isomerase A
similar to GB:M28363 SP:P20752 PID:145287 PID:145954 PID:147052; identified by sequence similarity; putative
genbank 15642297 NP_231930.1 194 2453446 2454030
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
219832 hypothetical VC2300 ampG protein, putative
similar to GB:U00096 SP:P36670 PID:1773117 PID:1786636 PID:563855; identified by sequence similarity; putative
genbank 15642298 NP_231931.1 462 2454099 2455487
219833 hypothetical VC2301 transcriptional activator, putative
similar to SP:P40685; identified by sequence similarity; putative
genbank 15642299 NP_231932.1 226 2455575 2456255
219834 hypothetical VC2302 RNA polymerase sigma-70 factor
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
genbank 15642300 NP_231933.1 194 2456252 2456836
219835 hypothetical VC2303 hypothetical protein
identified by Glimmer2; putative
genbank 15642301 NP_231934.1 193 2456927 2457508
219836 hypothetical VC2304 hypothetical protein
identified by Glimmer2; putative
genbank 15642302 NP_231935.1 36 2457577 2457687
219837 hypothetical VC2305 outer membrane protein OmpK
similar to PID:1166401 SP:P51002; identified by sequence similarity; putative
genbank 15642303 NP_231936.1 296 2457746 2458636
219838 hypothetical VC2306 hypothetical protein
identified by Glimmer2; putative
genbank 15642304 NP_231937.1 30 2458633 2458725
219839 hypothetical VC2307 2-dehydropantoate 2-reductase
catalyzes the formation of 2-dehydropantoate from (R)-pantoate
genbank 15642305 NP_231938.1 296 2458775 2459665
219840 hypothetical VC2308 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
similar to PID:1100872 GB:U00096 SP:Q46948 PID:1773108 PID:1786626; identified by sequence similarity; putative
genbank 15642306 NP_231939.1 205 2459650 2460267
219841 hypothetical VC2309 aminotransferase, class V
similar to PID:882705 GB:U00096 PID:1789175; identified by sequence similarity; putative
genbank 15642307 NP_231940.1 404 2460251 2461465
219842 hypothetical VC2310 hypothetical protein
identified by Glimmer2; putative
genbank 15642308 NP_231941.1 144 2461535 2461969
219843 hypothetical VC2311 HesA/MoeB/ThiF family protein
similar to GB:D21145 PID:471103 PID:882707 GB:U00096 SP:Q46927; identified by sequence similarity; putative
genbank 15642309 NP_231942.1 273 2461974 2462795
219844 hypothetical VC2312 membrane-bound lytic murein transglycosylase A
similar to SP:P46885 PID:882708 PID:974447 GB:U00096 PID:1789179; identified by sequence similarity; putative
genbank 15642310 NP_231943.1 368 2462887 2463993
219845 hypothetical VC2313 hypothetical protein
identified by Glimmer2; putative
genbank 15642311 NP_231944.1 36 2463957 2464067
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
219846 hypothetical VC2314 hypothetical protein
identified by Glimmer2; putative
genbank 15642312 NP_231945.1 134 2464064 2464468
219847 hypothetical VC2315 hypothetical protein
identified by Glimmer2; putative
genbank 15642313 NP_231946.1 31 2464517 2464612
219848 hypothetical VC2316 N-acetylglutamate synthase
catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
genbank 15642314 NP_231947.1 456 2464704 2466074
219849 hypothetical VC2317 hypothetical protein
identified by Glimmer2; putative
genbank 15642315 NP_231948.1 54 2466048 2466212
219850 hypothetical VC2318 hypothetical protein
identified by Glimmer2; putative
genbank 15642316 NP_231949.1 61 2466301 2466486
219851 hypothetical VC2319 exodeoxyribonuclease V, 67 kDa subunit
similar to GP:3142727; identified by sequence similarity; putative
genbank 15642317 NP_231950.1 706 2466516 2468636
219852 hypothetical VC2320 exodeoxyribonuclease V, 135 kDa subunit
similar to SP:P08394 GB:X04581 GB:X04582 PID:42682 PID:763090; identified by sequence similarity; putative
genbank 15642318 NP_231951.1 1208 2468633 2472259
219853 hypothetical VC2321 hypothetical protein
identified by Glimmer2; putative
genbank 15642319 NP_231952.1 33 2472416 2472517
219854 hypothetical VC2322 exodeoxyribonuclease V, 125 kDa subunit
similar to SP:P07648 PID:42689 PID:882714 GB:U00096 PID:1789186; identified by sequence similarity; putative
genbank 15642320 NP_231953.1 1148 2472524 2475970
219855 hypothetical VC2323 hypothetical protein
identified by Glimmer2; putative
genbank 15642321 NP_231954.1 322 2476209 2477177
219856 hypothetical VC2324 transcriptional regulator, LysR family
similar to SP:P32484 PID:405876 PID:466777 GB:U00096 PID:1788481; identified by sequence similarity; putative
genbank 15642322 NP_231955.1 304 2477288 2478202
219857 hypothetical VC2325 hypothetical protein
identified by Glimmer2; putative
genbank 15642323 NP_231956.1 36 2478157 2478267
219858 hypothetical VC2326 hypothetical protein
identified by Glimmer2; putative
genbank 15642324 NP_231957.1 102 2478318 2478626
219859 hypothetical VC2327 hypothetical protein
identified by Glimmer2; putative
genbank 15642325 NP_231958.1 32 2478627 2478725
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
219860 hypothetical VC2328 hypothetical protein
identified by Glimmer2; putative
genbank 15642326 NP_231959.1 43 2478920 2479051


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