R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7484675|pir||T09117 multisubunit regulator protein COP9 - spinach
>gi|1256771|gb|AAA96516.1| (U51270) COP9 [Spinacia oleracea]
Length = 204
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 786 (276.7 bits), Expect = 3.8e-77, P = 3.8e-77
Identities = 144/204 (70%), Positives = 176/204 (86%), Frame = +2
Query: 17 IEELGV-MDFSSVRAALDSKSYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVH 193
+EE+ MDFS + A+ S+SYDK+AD+CDNLMLQV+AEGI +Q+DWPY IHLL HIY
Sbjct: 1 MEEVATTMDFSPLTDAIASESYDKIADICDNLMLQVSAEGIVFQNDWPYAIHLLGHIYAG 60
Query: 194 DINSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAA 373
DINSARFLWKSIP +IKESQPE+ AVW IGQKLW RDYAGV+EA+R F+W+ ++ +AA
Sbjct: 61 DINSARFLWKSIPIAIKESQPEIIAVWGIGQKLWTRDYAGVYEAVRSFNWSPQIHPFIAA 120
Query: 374 FSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQP 553
FS+ TK+MFQLL++AYSTIS++DTALFLGM+ED+AT YVLQ+GW +D A++ML VKKQ
Sbjct: 121 FSDNNTKKMFQLLVAAYSTISVQDTALFLGMSEDEATTYVLQEGWILDSAARMLTVKKQT 180
Query: 554 VVTEQKLDPSKLQRLTEYVFHLEH 625
+VTEQKLDPSKLQRLTEYVFHLEH
Sbjct: 181 IVTEQKLDPSKLQRLTEYVFHLEH 204
>gi|1169013|sp|P43255|COP9_ARATH COP9 PROTEIN (FUSCA PROTEIN FUS7)
>gi|625971|pir||A54842 COP9 protein - Arabidopsis thaliana
>gi|530870|gb|AAA32773.1| (L32874) CSN8 [Arabidopsis thaliana]
>gi|2244767|emb|CAB10190.1| (Z97335) COP9 protein [Arabidopsis
thaliana] >gi|7268116|emb|CAB78453.1| (AL161538) COP9 protein
[Arabidopsis thaliana]
Length = 197
Frame 2 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
__________________
Annotated Domains:
PRODOM PD022805: COP9(1) Q41369(1) Q99627(1) 1..196
__________________
Plus Strand HSPs:
Score = 760 (267.5 bits), Expect = 2.2e-74, P = 2.2e-74
Identities = 142/197 (72%), Positives = 163/197 (82%), Frame = +2
Query: 35 MDFSSVRAALDSKSYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVHDINSARF 214
MD S V+ AL +KS+DK+AD+CD LMLQVA+EGI Y DDWPY IHLL + YV D +SARF
Sbjct: 1 MDLSPVKEALAAKSFDKIADICDTLMLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARF 60
Query: 215 LWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTK 394
LWK IP++IKE +PEV A W IGQKLW DYAGV+EAIRG+DW+QE + +VAAFS+LYTK
Sbjct: 61 LWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTK 120
Query: 395 EMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKL 574
MFQLLLSAYSTI+I D ALFLGM EDDAT YV++ GWTVD ASQM VKKQ V EQK+
Sbjct: 121 RMFQLLLSAYSTITIHDLALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKV 180
Query: 575 DPSKLQRLTEYVFHLEH 625
D SKLQRLTEYVFHLEH
Sbjct: 181 DSSKLQRLTEYVFHLEH 197
>gi|5729779 ref|NP_006701.1| COP9 homolog [Homo sapiens]
>gi|1730284|gb|AAB38529.1| (U51205) COP9 signalosome subunit 1 CSN1
[Homo sapiens]
Length = 209
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
Plus Strand HSPs:
Score = 284 (100.0 bits), Expect = 6.0e-24, P = 6.0e-24
Identities = 59/177 (33%), Positives = 102/177 (57%), Frame = +2
Query: 74 SYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVH-DINSARFLWKSIPSSIKES 250
S+ K+ D C+N L+ A GIA P LL+ +H D+N+AR+LWK IP +IK +
Sbjct: 12 SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67
Query: 251 QPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYST 430
E+ +W +GQ++W RD+ G++ I W++ +Q ++ A + + F L+ AY++
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTS 127
Query: 431 ISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTE 604
I D A F+G+ ++A +L+QGW D ++M++ +K PV + +K L+E
Sbjct: 128 IIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRK-PVAGALDVSFNKFIPLSE 184
>gi|12729210 ref|XP_010948.1| similar to COP9 homolog (H. sapiens) [Homo
sapiens]
Length = 209
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
Plus Strand HSPs:
Score = 269 (94.7 bits), Expect = 2.3e-22, P = 2.3e-22
Identities = 55/177 (31%), Positives = 101/177 (57%), Frame = +2
Query: 74 SYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVHDINSARFLWKSIPSSIKESQ 253
S+ K+ D C+N L+ A GIA + + L + +D+N+AR+LWK IP + K +
Sbjct: 12 SFKKLLDQCENQELE-APGGIATPPVYGQRLALC--LLRNDMNNARYLWKRIPPATKSAN 68
Query: 254 PEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTI 433
E+ +W +G+++W RD+ G++ I W++ +Q ++ A + + F L+ AY++I
Sbjct: 69 SELGGIWSVGRRVWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRTFALVSQAYTSI 128
Query: 434 SIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTE 604
D A F+G+ ++A +L+QGW VD ++M++ +K PV + +K L+E
Sbjct: 129 ITDDFAAFVGLPIEEAVKGLLEQGWQVDSTTRMVLPRK-PVAGALDVSFNKFIPLSE 184
>gi|7297391|gb|AAF52650.1| (AE003621) CG13383 gene product [Drosophila
melanogaster]
Length = 134
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 134
0 50 100
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.0020, P = 0.0020
Identities = 34/133 (25%), Positives = 72/133 (54%), Frame = +2
Query: 227 IPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQ 406
+P+++++ + E+ + + L +YA + I+ ++W++ +++ V +E+F+
Sbjct: 3 VPANLRDDK-ELIQLNLLNIALQNNNYADFFKHIK-YEWSERVKSPVEDLLNKQREELFK 60
Query: 407 LLLSAYSTISIKDTALFLG-MNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQ---KL 574
L+ SAY +I + L L M+ED+ + WT + +I+K P V E +
Sbjct: 61 LMGSAYMSI-YQHNLLELSLMSEDELKHACAALNWTEELDGDRVILK--PKVQEAPPARG 117
Query: 575 DPSKLQRLTEYVFHLEH 625
+ +L +LTE+V LE+
Sbjct: 118 NDDQLLKLTEFVTFLEN 134
>gi|3914462|sp|O42897|PSD3_SCHPO PROBABLE 26S PROTEASOME REGULATORY SUBUNIT S3
>gi|7492878|pir||T39299 probable proteosome subunit - fission yeast
(Schizosaccharomyces pombe) (fragment) >gi|2959362|emb|CAA17916.1|
(AL022117) 26s proteasome regulatory subunit [Schizosaccharomyces
pombe]
Length = 436
Frame 2 hits (HSPs): ______________
Annotated Domains: ____ __________
__________________________________________________
Database sequence: | | | | 436
0 150 300
__________________
Annotated Domains:
PFAM PCI: PCI domain 292..373
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 164..185
__________________
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.40, P = 0.33
Identities = 29/116 (25%), Positives = 56/116 (48%), Frame = +2
Query: 158 YTIHLLSHIYVHDINSAR-FLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRG 334
Y +H++ + + +I R F KS+ ++ AV +IG D +EA
Sbjct: 231 YKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAV-RIGDLCAFTDALSKYEAEFR 289
Query: 335 FDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQG 505
FD L TL+ K +++ +YS IS++D + LG++ +++ Y++ +G
Sbjct: 290 FDG---LYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEESAEYIVAKG 343
>gi|87791|pir||A24629 Ig gamma-3 chain C region - human (fragment)
>gi|184745|gb|AAC82525.1| (J00220) immunoglobulin gamma-3 heavy
chain constant region [Homo sapiens] >gi|683576|emb|CAA28307.1|
(X04646) immunoglobulin gamma heavy chain [Homo sapiens]
Length = 90
Frame -1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 90
0 20 40 60 80
Minus Strand HSPs:
Score = 69 (24.3 bits), Expect = 1.4, P = 0.74
Identities = 20/57 (35%), Positives = 24/57 (42%), Frame = -1
Query: 188 HKCERGGELCRANRPDKQCPQLQPEASSCRTHPQPCRTTSNPTQ-PSPKRNPSLPIPQ 18
H C R E + P CP+ PE SC T P PC P +P P P P+
Sbjct: 22 HTCPRCPEPKSCDTPPP-CPRC-PEPKSCDT-PPPCPRCPEPKSCDTPPPCPRCPAPE 76
>gi|6473221|dbj|BAA87112.1| (AB027808) Hypothetical nuclear protein
[Schizosaccharomyces pombe]
Length = 71
Frame -1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.8, P = 0.98
Identities = 14/45 (31%), Positives = 24/45 (53%), Frame = -1
Query: 176 RGGELCRANRPDKQCPQLQPEASSCRTHPQPCRTTSNPTQPSPKR 42
R ++CR + +C QP S+C +H PC T+ P + + +R
Sbjct: 9 RACDMCRKRKI--RCDGKQPACSNCVSHGIPCVFTARPKRRTGQR 51
>gi|102986|pir||S05589 Balbiani ring protein 1-beta (clone 14-2) - midge
(Chironomus pallidivittatus) (fragment) >gi|683541|emb|CAA31444.1|
(X13030) giant secretory protein [Chironomus pallidivittatus]
Length = 75
Frame -1 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | 75
0 20 40 60
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 4.9, P = 0.99
Identities = 18/61 (29%), Positives = 28/61 (45%), Frame = -1
Query: 197 CREHKCERGGELCR---ANRPDKQCPQLQPEASSCRTHPQPCRTTSNPTQPSPKR-NPSL 30
C + G+ CR AN+P K P+ + + S +P ++ P +PS R PS
Sbjct: 14 CAKKNGRFNGKNCRCTSANKPSKSGPKPERPSKSGPKPERPSKSGPKPERPSKSRPKPSR 73
Query: 29 P 27
P
Sbjct: 74 P 74
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.153 0.527
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.328 0.139 0.430
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.354 0.158 0.599
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.333 0.139 0.443
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.347 0.153 0.490
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.369 0.158 0.558
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 218 218 10. 77 3 12 22 0.10 35
32 0.12 38
+2 0 218 218 10. 77 3 12 22 0.10 35
32 0.12 38
+1 0 218 218 10. 77 3 12 22 0.10 35
32 0.12 38
-1 0 218 218 10. 77 3 12 22 0.10 35
32 0.12 38
-2 0 218 218 10. 77 3 12 22 0.10 35
32 0.12 38
-3 0 218 218 10. 77 3 12 22 0.10 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 9
No. of states in DFA: 595 (59 KB)
Total size of DFA: 230 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 262.32u 1.04s 263.36t Elapsed: 00:00:55
Total cpu time: 262.36u 1.06s 263.42t Elapsed: 00:00:55
Start: Thu Jan 17 01:38:14 2002 End: Thu Jan 17 01:39:09 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000