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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs151203          
refSNP ID: rs151203
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:G/T
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss44596116 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs151203 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss299155KWOK|OVLP-000621-310284fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta06/30/0010/10/0379Genomic97 %
ss299462KWOK|OVLP-000621-312897fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta06/30/0010/10/0379Genomic97 %
ss300230KWOK|OVLP-000621-315857fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta06/30/0010/10/0385Genomic97 %
ss1016530KWOK|OVLP-000804-247599fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta09/02/0010/10/0386Genomic97 %
ss1017417KWOK|OVLP-000804-256095fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta09/02/0010/10/0386Genomic97 %
ss1017583KWOK|OVLP-000804-257042fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta09/02/0010/10/0386Genomic97 %
ss2041945KWOK|OVLP-000925-114444byFreqfwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta10/06/0005/16/0487Genomic97 %
ss2042070KWOK|OVLP-000925-121067fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta10/06/0010/10/0387Genomic97 %
ss2042129KWOK|OVLP-000925-122297fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta10/06/0010/10/0387Genomic97 %
ss3727809SC_JCM|AC025790.2_65666fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta09/25/0110/10/03100Genomicunknown
ss22327180SSAHASNP|WGSA-200403-chr5.chr5.NT_006431.13_5095262fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta03/21/0403/21/04121Genomicunknown
ss24374156PERLEGEN|afd0846987byFreqfwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta08/10/0409/13/04123Genomicunknown
ss44596116ABI|hCV1080035fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta07/19/0507/19/05126Genomicunknown
ss75123905ILLUMINA|ILMN_Human_1M_rs151203fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta08/28/0708/29/07129Genomicunknown
ss84793376HGSV|Cor18517_SNV_20070510.chr5_54566276fwd/BG/Tctggtagaagctggagcccttctgtggcctagtgaatcttcctgagggtctctgacccta12/06/0712/08/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs151203|allelePos=301|totalLen=601|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=130
 AGCAAGCTGG GGCTACAGCG GTTTAAGAAC ATTGTTGGAA AGTTGCATTT CGAGTTTGAT
 CGAATTGCTC ACAGCCTGTT CCGTTTTAGG TCATTAGCTT CTGGCCTTCT GCCCCGCCGG
 CAGCCCAGTC CTTGGTTTTT CCCTGCTTCC TGCGTCCGCT CCTTCAGGGT GATAAACTCA
 GGGAAATTAA AGCTGGAATG GGGACGCCCA GGCCGACTGG GCGTGGCAGT TTCCTCAAGG
 CGCCTCGGGT TTAGTCCACA GACTCCCGTC CTGGTAGAAG CTGGAGCCCT TCTGTGGCCT
 K
 AGTGAATCTT CCTGAGGGTC TCTGACCCTA TAGGAGAAGG GGCTGCAGGA GCACAAGTAG
 CCCATAATCA ACCTCACAGG CACTTAGCAA CGGCAGAAAG CTCAGGTACC CTCAACCCTG
 GTGTTTTCCA GAGGCGAGGC TACTGGGTGC CAAACCAAGA GCAGGTTCAG CCACCTAACC
 TCATTCCAGA AGAAAGCTGA TAAATGTGTC TGCTCAAAGT ACAAGTTTCT GTCTATGAAA
 ATTTAGTAGA TGGTGGGATG GTGTCTCCTA GAGATGCAGG TGAAAGAAAA GGAATGGATT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs151203 maps exactly once on NCBI human chromosome 5
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
5NW_922607.1509868651483300plusTalt_assembly_1CeleraCeleraview300
5NW_001838934.1511084151503521plusTalt_assembly_8HuRefHuRefview300
5NT_006713.14512487854566276plusGref_assemblyreferencereferenceview300

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_006431 AC020728 AC025790.2 AC026704 AC026704.3 AC026737 AC026737.4
dbSNP Blast Analysis
GenBank HTGS Draft:
AL355820.17

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceG/G
G/T
T/T
HWPG
N
T
ss2041945CEPH 184AF 0.310 0.690
CHMJAsian 74IG 0.311 0.041 0.649
ss24374156AFD_EUR_PANELEuropean 44IG 0.182 0.455 0.364 1.000 0.409 0.591
AFD_AFR_PANELAfrican American 38IG 0.105 0.421 0.474 1.000 0.316 0.684
AFD_CHN_PANELAsian 36IG 0.111 0.278 0.611 0.273 0.250 0.750

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
0.443+/-0.159715000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterbyFreqbySubmitterwith2hit
Validated by: PERLEGEN
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .