Reference SNP(refSNP) Cluster Report: rs402710

Reference SNP(refSNP) Cluster Report: rs402710

refSNP ID: rs402710
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	80/129
Map to Genome Build:	36.3
Citation:	NHGRI GWAS PubMed

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_030782.3:c.1532+9G>A
NT_006576.15:g.1310722C>T

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss44605366 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs402710 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss525010	SC_JCM\|AC026748.3_33174	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	07/12/00	10/25/06	80	Genomic	unknown
ss3253649	YUSUKE\|IMS-JST063734	rev/T	A/G	tggtctacctgtaccagcggtggtgagtgc	gctgcgtatgctcggccgttgctccgtctc	09/05/01	10/10/03	100	Genomic	unknown
ss3441833	SC_JCM\|AC026748.5_32160	rev/T	A/G	tggtctacctgtaccagcggtggtgagtgc	gctgcgtatgctcggccgttgctccgtctc	09/24/01	10/10/03	100	Genomic	unknown
ss11723816	WI_SSAHASNP\|chr5.NT_023089.13_1303460	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	07/03/03	10/10/03	116	Genomic	unknown
ss22275420	SSAHASNP\|WGSA-200403-chr5.chr5.NT_023089.13_1303460	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	03/21/04	03/21/04	121	Genomic	unknown
ss44605366	ABI\|hCV1150769	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	07/19/05	11/03/06	126	Genomic	unknown
ss65728149	ILLUMINA\|Human1-rs402710	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	10/10/06	10/10/06	127	Genomic	unknown
ss66841117	ILLUMINA\|HumanHap300v1.1_rs402710	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	11/09/06	11/09/06	127	Genomic	unknown
ss67313073	ILLUMINA\|HumanHap550v1.1_rs402710	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	11/14/06	11/14/06	127	Genomic	unknown
ss67719122	ILLUMINA\|HumanHap650Yv1.0_rs402710	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	11/14/06	11/14/06	127	Genomic	unknown
ss68923813	PERLEGEN\|PGP09639921	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	01/30/07	08/14/07	127	Genomic	unknown
ss70791707	ILLUMINA\|HumanHap550v3.0__rs402710	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	04/20/07	03/30/08	130	Genomic	unknown
ss71369287	ILLUMINA\|HumanHap650Yv3.0_rs402710	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	04/23/07	04/23/07	127	Genomic	unknown
ss75872386	ILLUMINA\|ILMN_Human_1M_rs402710	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	08/28/07	08/29/07	129	Genomic	unknown
ss77444578	HGSV\|Cor12156_SNV_20070510.chr5_1373722	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	10/09/07	10/13/07	129	Genomic	unknown
ss79174029	ILLUMINA\|HumanHap300v2.0_rs402710	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	04/18/07	11/18/07	130	Genomic	unknown
ss83425426	HGSV\|Cor19240_SNV_20070510.chr5_1373722	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	11/30/07	12/05/07	130	Genomic	unknown
ss83447001	KRIBB_YJKIM\|KHS463780	fwd/B	C/T	gagacggagcaacggccgagcatacgcagc	gcactcaccaccgctggtacaggtagacca	12/04/07	12/05/07	130	Genomic	unknown

Fasta sequence (Legend)

 TGACTGTGAA TAGGTAAATA AATCGCTTAA GGAGAGACAT TTGCTTTCAG TGGCTCATCA
 ATAATTCACA TAGAAACGAG CATTTCTAAA GCACAGTGAG GAGACAGAGC TGGAACAGTT
 TCTTGCCAGG ACATATCATG GGCAACTGGA ACCCAAGTTT AGGCAAGACA GGAAAAACCA
 CCACCTGCAA ATTATCTTTT CCCTCAAATG GATAAACAGG CGCAGGGTGC GGTGAAAGCC
 GTCATTCCGT TCAGCAGCAG CCACGCCGCT GAGACGGAGC AACGGCCGAG CATACGCAGC
 Y
 GCACTCACCA CCGCTGGTAC AGGTAGACCA GAAACACCAC GTCGTCCCGG AAGCAGGCCA
 GCCGGTGAGA CGTGGGCATG GTGATGATGA AGGCAAAGAC GTCATCAATG AAGGTGTTGA
 AAGCCTGCAG GGCCAGACGG GAGGAGGGTG AACCCCAGTT GCTGGGGCTG GAATCCTACT
 GTTTTTGGTA ACCTAACCAA GCCAACGGCT TTTGGCAGAT GCTTGGAACT AACTGGAACT
 CCTCACAGCA ACAACAAAAA GAGCAGAAAG CCGGCAAGTG GAGATACGGA GCTCTGTTCC

GeneView

GeneView via analysis of contig annotation: CLPTM1L CLPTM1-like

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_006576->NM_030782

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_006576->NM_030782->NP_110409	1310722	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs402710 maps exactly once on NCBI human chromosome 5

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
5	NW_001838923.2	821956	1301015	minus	A	alt_assembly_8	HuRef	HuRef	view	300
5	NW_922518.1	460010	1357578	plus	T	alt_assembly_1	Celera	Celera	view	300
5	NT_006576.15	1310722	1373722	plus	C	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_023089 AC022130

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank mRNA:
CT824641.5	AK126225.1

UniGene Cluster ID
444673

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss3253649	JBIC-allele		1484	AF					0.679	0.321

ss44605366	HapMap-CEU	European	116	IG	0.431	0.483	0.086	0.317	0.672	0.328

	HapMap-HCB	Asian	90	IG	0.556	0.356	0.089	0.584	0.733	0.267

	HapMap-JPT	Asian	88	IG	0.409	0.523	0.068	0.251	0.670	0.330

	HapMap-YRI	Sub-Saharan African	118	IG	0.220	0.559	0.220	0.317	0.500	0.500

	AoD_African_American		90	AF					0.540	0.460

	AoD_Caucasian		92	AF					0.640	0.360

ss68923813	HapMap-CEU	European	120	GF	0.450	0.550			0.725	0.275

	HapMap-HCB	Asian	90	GF	0.756	0.244			0.878	0.122

	HapMap-JPT	Asian	90	GF	0.556	0.444			0.778	0.222

	HapMap-YRI	Sub-Saharan African	120	GF	0.333	0.667			0.667	0.333

Concordant Genotype	Total Sample	C/C	C/T	T/T
ss44605366	199	99	94
ss68923813	199	101	98

RefSNP Genotype Summary	Total Individual	C/C	C/T	T/T
rs402710	270	101	98

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
157	ss44605366	C/T	CSHL-HAPMAP	HapMap-CEU	NA12144	CEPH1334.10	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
157	ss68923813	C/C	CSHL-HAPMAP	HapMap-CEU	NA12144	CEPH1334.10	chr5-HapMap-CEU
159	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
159	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	chr5-HapMap-CEU
174	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA07048	CEPH1341.01	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
174	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA07048	CEPH1341.01	chr5-HapMap-CEU
175	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA06991	CEPH1341.02	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
175	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA06991	CEPH1341.02	chr5-HapMap-CEU
185	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA07055	CEPH1341.12	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
185	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA07055	CEPH1341.12	chr5-HapMap-CEU
242	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
242	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA10854	CEPH1349.02	chr5-HapMap-CEU
348	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
348	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	chr5-HapMap-CEU
366	ss44605366	C/T	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
366	ss68923813	C/C	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	chr5-HapMap-CEU
373	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA12264	CEPH1375.11	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
373	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA12264	CEPH1375.11	chr5-HapMap-CEU
410	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
410	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	chr5-HapMap-CEU
429	ss44605366	C/T	CSHL-HAPMAP	HapMap-CEU	NA10835	CEPH1416.01	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
429	ss68923813	C/C	CSHL-HAPMAP	HapMap-CEU	NA10835	CEPH1416.01	chr5-HapMap-CEU
537	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA12752	CEPH1447.01	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
537	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA12752	CEPH1447.01	chr5-HapMap-CEU
579	ss44605366	T/T	CSHL-HAPMAP	HapMap-CEU	NA12815	CEPH1454.15	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
579	ss68923813	C/T	CSHL-HAPMAP	HapMap-CEU	NA12815	CEPH1454.15	chr5-HapMap-CEU
610	ss44605366	C/T	CSHL-HAPMAP	HapMap-CEU	NA12864	CEPH1459.01	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
610	ss68923813	C/C	CSHL-HAPMAP	HapMap-CEU	NA12864	CEPH1459.01	chr5-HapMap-CEU
618	ss44605366	C/T	CSHL-HAPMAP	HapMap-CEU	NA12872	CEPH1459.09	r23_ch5_CEU_illumina:infinium_genotyping_1.0.0
618	ss68923813	C/C	CSHL-HAPMAP	HapMap-CEU	NA12872	CEPH1459.09	chr5-HapMap-CEU
5133	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18502	YOR004.02	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5133	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18502	YOR004.02	chr5-HapMap-YRI
5135	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19128	YOR077.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5135	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19128	YOR077.03	chr5-HapMap-YRI
5139	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19100	YOR105.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5139	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19100	YOR105.01	chr5-HapMap-YRI
5144	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19192	YOR112.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5144	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19192	YOR112.03	chr5-HapMap-YRI
5149	ss44605366	T/T	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5149	ss68923813	C/T	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	chr5-HapMap-HCB
5151	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18558	CH18558	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5151	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18558	CH18558	chr5-HapMap-HCB
5156	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18603	CH18603	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5156	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18603	CH18603	chr5-HapMap-HCB
5157	ss44605366	T/T	CSHL-HAPMAP	HapMap-HCB	NA18540	CH18540	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5157	ss68923813	C/T	CSHL-HAPMAP	HapMap-HCB	NA18540	CH18540	chr5-HapMap-HCB
5158	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5158	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	chr5-HapMap-HCB
5169	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5169	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	chr5-HapMap-HCB
5171	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5171	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	chr5-HapMap-HCB
5174	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18571	CH18571	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5174	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18571	CH18571	chr5-HapMap-HCB
5180	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18623	CH18623	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5180	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18623	CH18623	chr5-HapMap-HCB
5182	ss44605366	T/T	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5182	ss68923813	C/T	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	chr5-HapMap-HCB
5189	ss44605366	T/T	CSHL-HAPMAP	HapMap-HCB	NA18592	CH18592	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5189	ss68923813	C/T	CSHL-HAPMAP	HapMap-HCB	NA18592	CH18592	chr5-HapMap-HCB
5191	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5191	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	chr5-HapMap-HCB
5192	ss44605366	C/T	CSHL-HAPMAP	HapMap-HCB	NA18637	CH18637	r23_ch5_HCB_illumina:infinium_genotyping_1.0.0
5192	ss68923813	C/C	CSHL-HAPMAP	HapMap-HCB	NA18637	CH18637	chr5-HapMap-HCB
5199	ss44605366	C/T	CSHL-HAPMAP	HapMap-JPT	NA18945	JA18945	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5199	ss68923813	C/C	CSHL-HAPMAP	HapMap-JPT	NA18945	JA18945	chr5-HapMap-JPT
5201	ss44605366	C/T	CSHL-HAPMAP	HapMap-JPT	NA18948	JA18948	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5201	ss68923813	C/C	CSHL-HAPMAP	HapMap-JPT	NA18948	JA18948	chr5-HapMap-JPT
5204	ss44605366	C/T	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5204	ss68923813	C/C	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	chr5-HapMap-JPT
5210	ss44605366	T/T	CSHL-HAPMAP	HapMap-JPT	NA18961	JA18961	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5210	ss68923813	C/T	CSHL-HAPMAP	HapMap-JPT	NA18961	JA18961	chr5-HapMap-JPT
5217	ss44605366	C/T	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5217	ss68923813	C/C	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	chr5-HapMap-JPT
5218	ss44605366	T/T	CSHL-HAPMAP	HapMap-JPT	NA18978	JA18978	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5218	ss68923813	C/T	CSHL-HAPMAP	HapMap-JPT	NA18978	JA18978	chr5-HapMap-JPT
5223	ss44605366	C/T	CSHL-HAPMAP	HapMap-JPT	NA18971	JA18971	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5223	ss68923813	C/C	CSHL-HAPMAP	HapMap-JPT	NA18971	JA18971	chr5-HapMap-JPT
5229	ss44605366	T/T	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5229	ss68923813	C/T	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	chr5-HapMap-JPT
5232	ss44605366	C/T	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	r23_ch5_JPT_illumina:infinium_genotyping_1.0.0
5232	ss68923813	C/C	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	chr5-HapMap-JPT
5240	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18504	YOR005.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5240	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18504	YOR005.03	chr5-HapMap-YRI
5243	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18507	YOR009.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5243	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18507	YOR009.03	chr5-HapMap-YRI
5244	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA18860	YOR012.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5244	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA18860	YOR012.01	chr5-HapMap-YRI
5247	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18515	YOR013.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5247	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18515	YOR013.01	chr5-HapMap-YRI
5248	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18517	YOR013.02	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5248	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18517	YOR013.02	chr5-HapMap-YRI
5249	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18516	YOR013.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5249	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18516	YOR013.03	chr5-HapMap-YRI
5252	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA18522	YOR016.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5252	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA18522	YOR016.03	chr5-HapMap-YRI
5253	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18872	YOR017.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5253	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18872	YOR017.01	chr5-HapMap-YRI
5256	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA18854	YOR018.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5256	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA18854	YOR018.01	chr5-HapMap-YRI
5257	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5257	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	chr5-HapMap-YRI
5265	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18914	YOR028.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5265	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18914	YOR028.01	chr5-HapMap-YRI
5266	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18912	YOR028.02	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5266	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18912	YOR028.02	chr5-HapMap-YRI
5267	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5267	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	chr5-HapMap-YRI
5270	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19092	YOR040.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5270	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19092	YOR040.03	chr5-HapMap-YRI
5271	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19103	YOR042.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5271	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19103	YOR042.01	chr5-HapMap-YRI
5272	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19102	YOR042.02	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5272	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19102	YOR042.02	chr5-HapMap-YRI
5277	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19202	YOR045.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5277	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19202	YOR045.01	chr5-HapMap-YRI
5279	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19200	YOR045.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5279	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19200	YOR045.03	chr5-HapMap-YRI
5282	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19171	YOR047.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5282	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19171	YOR047.03	chr5-HapMap-YRI
5283	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19205	YOR048.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5283	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19205	YOR048.01	chr5-HapMap-YRI
5284	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19204	YOR048.02	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5284	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19204	YOR048.02	chr5-HapMap-YRI
5285	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19203	YOR048.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5285	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19203	YOR048.03	chr5-HapMap-YRI
5286	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5286	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	chr5-HapMap-YRI
5288	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19210	YOR050.03	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5288	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19210	YOR050.03	chr5-HapMap-YRI
5295	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5295	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19221	YOR058.01	chr5-HapMap-YRI
5298	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19120	YOR060.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5298	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19120	YOR060.01	chr5-HapMap-YRI
5299	ss44605366	C/T	CSHL-HAPMAP	HapMap-YRI	NA19116	YOR060.02	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5299	ss68923813	C/C	CSHL-HAPMAP	HapMap-YRI	NA19116	YOR060.02	chr5-HapMap-YRI
5304	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19154	YOR072.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5304	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19154	YOR072.01	chr5-HapMap-YRI
5307	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19145	YOR074.01	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5307	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19145	YOR074.01	chr5-HapMap-YRI
5308	ss44605366	T/T	CSHL-HAPMAP	HapMap-YRI	NA19143	YOR074.02	r23_ch5_YRI_illumina:infinium_genotyping_1.0.0
5308	ss68923813	C/T	CSHL-HAPMAP	HapMap-YRI	NA19143	YOR074.02	chr5-HapMap-YRI

Genotype data submitted for	270	samples from	270	individuals	Individual with multiple genotypes submission:	270

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

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Revised: May 25, 2006 1:38 PM .