R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7432998|pir||T05670 pollen-specific protein homolog F22I13.190 -
Arabidopsis thaliana >gi|4539350|emb|CAB37498.1| (AL035539)
putative pectinesterase [Arabidopsis thaliana]
>gi|7270826|emb|CAB80507.1| (AL161593) putative pectinesterase
[Arabidopsis thaliana]
Length = 548
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 548
0 150 300 450
Plus Strand HSPs:
Score = 231 (81.3 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 40/52 (76%), Positives = 47/52 (90%), Frame = +3
Query: 51 MWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHTRP 206
MWNLRSE+WARQYLGQQFY+RVY+ + S+RDEY +PKNALLCGRAS +HT P
Sbjct: 497 MWNLRSEYWARQYLGQQFYLRVYSPTHSLRDEYLLPKNALLCGRASNKHTTP 548
Score = 75 (26.4 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 12/15 (80%), Positives = 15/15 (100%), Frame = +2
Query: 5 PKSWTAIYIALDNVG 49
P+SWTA+Y+ALDNVG
Sbjct: 482 PESWTAVYVALDNVG 496
>gi|6573725|gb|AAF17645.1|AC009978_21 (AC009978) T23E18.10 [Arabidopsis
thaliana]
Length = 541
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 541
0 150 300 450
Plus Strand HSPs:
Score = 271 (95.4 bits), Expect = 6.0e-22, P = 6.0e-22
Identities = 50/68 (73%), Positives = 55/68 (80%), Frame = +3
Query: 6 PSHGLLYILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRA 185
PS ++ L MWNLRSEFWARQYLGQQ Y+RVYT STS+RDEYP+PKNALLCGRA
Sbjct: 474 PSSWTAILIALDNVGMWNLRSEFWARQYLGQQLYLRVYTPSTSLRDEYPIPKNALLCGRA 533
Query: 186 SGRHTRPL 209
SGR TRPL
Sbjct: 534 SGRSTRPL 541
>gi|7432999|pir||T02910 pollen-specific protein homolog T13J8.200 - Arabidopsis
thaliana >gi|4455368|emb|CAB36778.1| (AL035524) pectinesterase like
protein [Arabidopsis thaliana] >gi|7269663|emb|CAB79611.1|
(AL161572) pectinesterase like protein [Arabidopsis thaliana]
Length = 547
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 547
0 150 300 450
Plus Strand HSPs:
Score = 210 (73.9 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 36/49 (73%), Positives = 45/49 (91%), Frame = +3
Query: 51 MWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRH 197
MWNLRS+FWARQYLGQQFY+RV++ + S +DEYP+PKNALLCGRAS ++
Sbjct: 493 MWNLRSQFWARQYLGQQFYLRVHSPNHSPKDEYPLPKNALLCGRASNKN 541
Score = 79 (27.8 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 13/15 (86%), Positives = 15/15 (100%), Frame = +2
Query: 5 PKSWTAIYIALDNVG 49
PKSWTA+Y+ALDNVG
Sbjct: 478 PKSWTAVYVALDNVG 492
>gi|1255951|emb|CAA65634.1| (X96932) PS60 [Nicotiana tabacum]
Length = 540
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 540
0 150 300 450
Plus Strand HSPs:
Score = 262 (92.2 bits), Expect = 5.7e-21, P = 5.7e-21
Identities = 47/63 (74%), Positives = 54/63 (85%), Frame = +3
Query: 21 LYILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHT 200
+YI L MWNLR+EFWARQYLGQQ YMRVYTTSTS+RDEYP+P+NA LCG+ +GRHT
Sbjct: 479 IYIA-LDNVGMWNLRTEFWARQYLGQQLYMRVYTTSTSLRDEYPIPRNARLCGKVAGRHT 537
Query: 201 RPL 209
RPL
Sbjct: 538 RPL 540
>gi|2961346|emb|CAA18104.1| (AL022140) pectinesterase like protein [Arabidopsis
thaliana] >gi|7269046|emb|CAB79156.1| (AL161556) pectinesterase
like protein [Arabidopsis thaliana]
Length = 541
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 541
0 150 300 450
Plus Strand HSPs:
Score = 254 (89.4 bits), Expect = 4.3e-20, P = 4.3e-20
Identities = 47/62 (75%), Positives = 52/62 (83%), Frame = +3
Query: 21 LYILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHT 200
+YI L MWN+RSE WARQYLGQQFY+RVYT+STS RDEYP PKNAL+CGRA GRHT
Sbjct: 480 IYIA-LDNVGMWNIRSENWARQYLGQQFYLRVYTSSTSYRDEYPPPKNALMCGRAKGRHT 538
Query: 201 RP 206
RP
Sbjct: 539 RP 540
>gi|5263337|gb|AAD41439.1|AC007727_28 (AC007727) Strong similarity to gb|X96932
ascorbate oxidase-related protein PS60 from Nicotiana tabacum and
is a member of the PF|00394 Multicopper oxidase family. This gene
is cut off. [Arabidopsis thaliana]
Length = 359
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 359
0 150 300
Plus Strand HSPs:
Score = 238 (83.8 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 44/60 (73%), Positives = 49/60 (81%), Frame = +3
Query: 21 LYILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHT 200
+Y+ L MWNLRSE W RQYLGQQFYMRVYT STS+RDEY +PKNALLCGRA+G HT
Sbjct: 288 IYV-SLDNVGMWNLRSELWERQYLGQQFYMRVYTPSTSLRDEYLIPKNALLCGRATGHHT 346
>gi|6552745|gb|AAF16544.1|AC013482_18 (AC013482) T26F17.6 [Arabidopsis
thaliana]
Length = 551
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 551
0 150 300 450
Plus Strand HSPs:
Score = 238 (83.8 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 44/60 (73%), Positives = 49/60 (81%), Frame = +3
Query: 21 LYILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHT 200
+Y+ L MWNLRSE W RQYLGQQFYMRVYT STS+RDEY +PKNALLCGRA+G HT
Sbjct: 480 IYV-SLDNVGMWNLRSELWERQYLGQQFYMRVYTPSTSLRDEYLIPKNALLCGRATGHHT 538
>gi|6552744|gb|AAF16543.1|AC013482_17 (AC013482) T26F17.7 [Arabidopsis
thaliana]
Length = 538
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 538
0 150 300 450
Plus Strand HSPs:
Score = 234 (82.4 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 44/59 (74%), Positives = 48/59 (81%), Frame = +3
Query: 21 LYILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRH 197
+YI L MWN+RSE W RQYLGQQFYMRVYTTSTS+RDEY +PKNALLCGRAS H
Sbjct: 480 IYIA-LDNVGMWNMRSEIWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRASSSH 537
>gi|4105800|gb|AAD02557.1| (AF049931) PGPS/NH15 [Petunia x hybrida]
Length = 167
Frame 3 hits (HSPs): _______________
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 167
0 50 100 150
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 26/47 (55%), Positives = 31/47 (65%), Frame = +3
Query: 51 MWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASG 191
MWNLRS+ W + YLGQQ Y V + S S+RDEY +P N LCG G
Sbjct: 112 MWNLRSDMWEKFYLGQQLYFSVLSPSGSLRDEYNLPDNHPLCGIVKG 158
Score = 49 (17.2 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 8/15 (53%), Positives = 9/15 (60%), Frame = +2
Query: 5 PKSWTAIYIALDNVG 49
P SW A+ LDN G
Sbjct: 97 PNSWAAVMTTLDNAG 111
>gi|7432997|pir||T07129 pollen-specific protein homolog - tomato (fragment)
>gi|1944575|emb|CAB08077.1| (Z94058) pectinesterase [Lycopersicon
esculentum]
Length = 504
Frame 3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 504
0 150 300 450
Plus Strand HSPs:
Score = 181 (63.7 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/48 (72%), Positives = 40/48 (83%), Frame = +3
Query: 21 LYILRLTTWXMWNLRSEFWARQYLGQQFYMRVYT--TSTSIRDEYPVPK 161
+YI L MWNLR+EFWARQYLGQQ YMRVYT TSTS+RDEYP+P+
Sbjct: 457 IYIA-LDNVGMWNLRTEFWARQYLGQQLYMRVYTDSTSTSLRDEYPIPR 504
>gi|128592|sp|P29162|NTP3_TOBAC POLLEN-SPECIFIC PROTEIN NTP303 PRECURSOR
>gi|82190|pir||S22495 pollen-specific protein precursor - common
tobacco >gi|19902|emb|CAA43454.1| (X61146) pollen specific protein
[Nicotiana tabacum]
Length = 554
Frame 3 hits (HSPs): _______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 554
0 150 300 450
__________________
Annotated Domains:
DOMO DM00953: LACCASE 6..71
DOMO DM00645: MULTICOPPEROXIDASES 73..240
DOMO DM00873: MULTICOPPEROXIDASES 242..502
DOMO DM07265: 504..553
Entrez Domain: PLASTOCYANIN-LIKE 1. 22..143
Entrez Domain: PLASTOCYANIN-LIKE 2. 196..296
Entrez Domain: PLASTOCYANIN-LIKE 3. 411..521
Entrez glycosylation site: POTENTIAL. 31
Entrez glycosylation site: POTENTIAL. 59
Entrez glycosylation site: POTENTIAL. 108
Entrez glycosylation site: POTENTIAL. 332
Entrez glycosylation site: POTENTIAL. 352
Entrez glycosylation site: POTENTIAL. 423
PFAM Cu-oxidase: Multicopper oxidase 6..145
PRODOM PD126286: NTP3_TOBAC 1..28
PRODOM PD000573: LAC1(10) LAC2(7) NIR(6) 30..283
PRODOM PD007707: 286..543
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 189..196
__________________
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/62 (45%), Positives = 35/62 (56%), Frame = +3
Query: 6 PSHGLLYILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRA 185
P+ +L MWNLRSE W + YLG+Q Y V + S S+RDEY +P N LCG
Sbjct: 484 PNSWAAIMLTFDNAGMWNLRSEMWEKTYLGEQLYFSVLSPSRSLRDEYNIPDNHPLCGIV 543
Query: 186 SG 191
G
Sbjct: 544 KG 545
>gi|7432991|pir||T01152 pollen-specific protein homolog F26B6.28 - Arabidopsis
thaliana >gi|3152618|gb|AAC17097.1| (AC004482) putative
pectinesterase [Arabidopsis thaliana]
Length = 541
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 541
0 150 300 450
Plus Strand HSPs:
Score = 140 (49.3 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 26/59 (44%), Positives = 37/59 (62%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHTR 203
++ L MWNLRS+ W+R+YLGQ+ Y+RV+ S+ E P N L CG+A +H R
Sbjct: 483 LVSLDNKGMWNLRSQIWSRRYLGQELYVRVWNNEKSLYTESEPPVNVLFCGKA--KHPR 539
>gi|2464865|emb|CAB16759.1| (Z99707) pectinesterase like protein [Arabidopsis
thaliana] >gi|7270665|emb|CAB80382.1| (AL161590) pectinesterase
like protein [Arabidopsis thaliana]
Length = 541
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 541
0 150 300 450
Plus Strand HSPs:
Score = 136 (47.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/61 (44%), Positives = 37/61 (60%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHTRP 206
++ L MWNLRS+ W+R+YLGQ+ Y+RV+ S+ E P N L CG+A RP
Sbjct: 485 LVSLDNKGMWNLRSQIWSRRYLGQELYVRVWNDEKSLYTEAEPPLNVLYCGKAK----RP 540
Query: 207 L 209
L
Sbjct: 541 L 541
>gi|4204257|gb|AAD10638.1| (AC005223) 5493 [Arabidopsis thaliana]
Length = 555
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 25/56 (44%), Positives = 34/56 (60%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGR 194
+L MWN+RSE R+YLGQQ Y V + S+RDEY +P+ +L CG G+
Sbjct: 491 LLTFDNCGMWNIRSENAERRYLGQQLYASVLSPEKSLRDEYNMPETSLQCGLVKGK 546
>gi|6179398|emb|CAB59910.1| (AJ249211) BNH protein [Arabidopsis thaliana]
Length = 549
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 549
0 150 300 450
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 24/47 (51%), Positives = 31/47 (65%), Frame = +3
Query: 51 MWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASG 191
MWN+RSE R+YLG+Q Y+ V + S+RDEY +P N LCG G
Sbjct: 495 MWNIRSENLERKYLGEQLYVSVLSPEKSLRDEYNIPLNTNLCGIVKG 541
>gi|4204258|gb|AAD10639.1| (AC005223) 14409 [Arabidopsis thaliana]
Length = 558
Frame 3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 558
0 150 300 450
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 24/47 (51%), Positives = 31/47 (65%), Frame = +3
Query: 51 MWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASG 191
MWN+RSE R+YLG+Q Y+ V + S+RDEY +P N LCG G
Sbjct: 504 MWNIRSENLERKYLGEQLYVSVLSPEKSLRDEYNIPLNTNLCGIVKG 550
>gi|114268|sp|Q00624|ASO_BRANA L-ASCORBATE OXIDASE HOMOLOG PRECURSOR
(ASCORBASE) >gi|541907|pir||S23763 pollen-specific protein Bp10 -
rape >gi|17789|emb|CAA45554.1| (X64257) protein homologous to
ascorbate oxidase [Brassica napus]
Length = 555
Frame 3 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
__________________
Annotated Domains:
DOMO DM00953: LACCASE 3..73
DOMO DM00645: MULTICOPPEROXIDASES 75..242
DOMO DM00873: MULTICOPPEROXIDASES 244..501
DOMO DM07265: 503..554
Entrez metal-binding site: COPPER (TYPE 2) (PRO 444
Entrez glycosylation site: POTENTIAL. 33
Entrez glycosylation site: POTENTIAL. 61
Entrez glycosylation site: POTENTIAL. 110
Entrez glycosylation site: POTENTIAL. 330
Entrez glycosylation site: POTENTIAL. 350
Entrez glycosylation site: POTENTIAL. 422
PFAM Cu-oxidase: Multicopper oxidase 10..147
PRODOM PD000573: LAC1(10) LAC2(7) NIR(6) 32..285
PRODOM PD007707: 288..542
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 191..198
__________________
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 24/51 (47%), Positives = 32/51 (62%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCG 179
+L MWN+RSE R+YLGQQ Y V + S+RDEY +P+ +L CG
Sbjct: 490 LLTFDNCGMWNVRSENTERRYLGQQLYASVLSPEKSLRDEYNMPETSLQCG 540
>gi|99809|pir||S24950 pollen-specific protein Bp10 (clone Bp 1002) - rape
>gi|17795|emb|CAA47177.1| (X66608) Bplo [Brassica napus]
Length = 555
Frame 3 hits (HSPs): _____
Annotated Domains: _
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 191..198
__________________
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 24/51 (47%), Positives = 32/51 (62%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCG 179
+L MWN+RSE R+YLGQQ Y V + S+RDEY +P+ +L CG
Sbjct: 490 LLTFDNCGMWNIRSENSERRYLGQQLYASVLSPEKSLRDEYNMPETSLQCG 540
>gi|99808|pir||S24951 pollen-specific protein Bp10 (clone Bp 1003) - rape
>gi|17797|emb|CAA47178.1| (X66609) Bplo [Brassica napus]
Length = 555
Frame 3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 555
0 150 300 450
Plus Strand HSPs:
Score = 125 (44.0 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 23/51 (45%), Positives = 32/51 (62%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCG 179
+L MWN+RSE R+YLGQQ Y + + S+RDEY +P+ +L CG
Sbjct: 490 LLTFDNCGMWNIRSENSERRYLGQQLYASILSPEKSLRDEYNMPETSLQCG 540
>gi|99807|pir||S24949 pollen-specific protein Bp10 (clone Bp 1001) - rape
>gi|17782|emb|CAA47176.1| (X66607) Bplo [Brassica napus]
Length = 554
Frame 3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 554
0 150 300 450
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 23/51 (45%), Positives = 32/51 (62%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCG 179
+L MWN+ SE R+YLGQQ Y+ V + S+RDEY +P+ +L CG
Sbjct: 489 LLTFDNCGMWNIASENTERRYLGQQLYVSVLSPEKSLRDEYNMPETSLQCG 539
>gi|7433001|pir||T07634 pollen-specific protein homolog T1P17.10 - Arabidopsis
thaliana >gi|4725941|emb|CAB41712.1| (AL049730) putative
pollen-specific protein [Arabidopsis thaliana]
>gi|7267944|emb|CAB78285.1| (AL161534) putative pollen-specific
protein [Arabidopsis thaliana]
Length = 587
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 587
0 150 300 450
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0053, Sum P(2) = 0.0053
Identities = 23/62 (37%), Positives = 32/62 (51%), Frame = +3
Query: 54 WNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHTRPL*ASKQAPS 233
WNLR+E YLGQ+ Y+RV + + E+ P N L CG S + +P S A
Sbjct: 507 WNLRTENLDSWYLGQETYVRVVNPDENNKTEFGHPDNVLYCGALS-KLQKPQKVSSSASK 565
Query: 234 SM 239
S+
Sbjct: 566 SI 567
Score = 50 (17.6 bits), Expect = 0.0053, Sum P(2) = 0.0053
Identities = 9/15 (60%), Positives = 12/15 (80%), Frame = +2
Query: 5 PKSWTAIYIALDNVG 49
P +W+AI I+LDN G
Sbjct: 491 PGAWSAILISLDNPG 505
>gi|6721119|gb|AAF26773.1|AC007396_22 (AC007396) T4O12.2 [Arabidopsis thaliana]
Length = 545
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 545
0 150 300 450
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.011, P = 0.011
Identities = 23/58 (39%), Positives = 34/58 (58%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVY-----TTST-SIRDEYPVPKNALLCGR 182
++ + MWN+RS+ + YLGQ+ YMRV ST +RDE P+P N + CG+
Sbjct: 486 LIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543
>gi|7433000|pir||T05545 pollen-specific protein homolog F24A6.80 - Arabidopsis
thaliana >gi|4454012|emb|CAA23065.1| (AL035396) Pollen-specific
protein precursor like [Arabidopsis thaliana]
>gi|7269375|emb|CAB81335.1| (AL161563) Pollen-specific protein
precursor like [Arabidopsis thaliana]
Length = 561
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 561
0 150 300 450
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 1.3, P = 0.72
Identities = 18/51 (35%), Positives = 26/51 (50%), Frame = +3
Query: 27 ILRLTTWXMWNLRSEFWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCG 179
++ L +WN+R E R YLG++ YMR+ + E P N L CG
Sbjct: 501 LISLDNVGVWNIRVENLDRWYLGEETYMRITNPEEDGKTEMDPPDNVLYCG 551
>gi|6114698|emb|CAB59415.1| (AJ389993) T cell receptor beta chain variable
region [Homo sapiens]
Length = 84
Frame 3 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 84
0 20 40 60 80
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 1.8, P = 0.83
Identities = 16/66 (24%), Positives = 30/66 (45%), Frame = +3
Query: 72 FWARQYLGQQFYMRVYTTSTSIRDEYPVPKNALLCGRASGRHTRPL*ASKQAPSSMKTKA 251
+W R+ +G++ ++ S +DE +P N L R G ++ K P+ ++
Sbjct: 10 YWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYS----TLKVQPAELEDSG 65
Query: 252 VNLSAS 269
V AS
Sbjct: 66 VYFCAS 71
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.347 0.151 0.509
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.350 0.152 0.538
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.349 0.158 0.554
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.360 0.160 0.575
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.151 0.478
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.362 0.161 0.579
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 165 164 10. 74 3 12 22 0.10 34
30 0.10 37
+2 0 166 165 10. 74 3 12 22 0.10 34
30 0.10 37
+1 0 166 164 10. 74 3 12 22 0.10 34
30 0.10 37
-1 0 166 164 10. 74 3 12 22 0.10 34
30 0.10 37
-2 0 166 164 10. 74 3 12 22 0.10 34
30 0.10 37
-3 0 165 164 10. 74 3 12 22 0.10 34
30 0.10 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 24
No. of states in DFA: 594 (59 KB)
Total size of DFA: 188 KB (192 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 210.71u 1.43s 212.14t Elapsed: 00:01:05
Total cpu time: 210.77u 1.46s 212.23t Elapsed: 00:01:05
Start: Wed Feb 14 23:11:13 2001 End: Wed Feb 14 23:12:18 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000