Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss436381	KWOK|OVLP-000621-342116		rev/T	A/C	agctgatgggtattataacctcccataaaa	aggaaaacactctatcatccccaaatgtag	06/30/00	10/10/03	79	Genomic			99 %
ss439484	KWOK|OVLP-000621-348421		rev/T	A/C	agctgatgggtattataacctcccataaaa	aggaaaacactctatcatccccaaatgtag	06/30/00	10/10/03	85	Genomic			99 %
ss634133	SC_JCM|AL353714.2_14510		fwd/B	G/T	ctacatttggggatgatagagtgttttcct	ttttatgggaggttataatacccatcagct	07/12/00	10/25/06	85	Genomic			unknown
ss1130370	KWOK|OVLP-000804-362499		rev/T	A/C	agctgatgggtattataacctcccataaaa	aggaaaacactctatcatccccaaatgtag	09/02/00	10/10/03	86	Genomic			99 %
ss1131546	KWOK|OVLP-000804-368486		rev/T	A/C	agctgatgggtattataacctcccataaaa	aggaaaacactctatcatccccaaatgtag	09/02/00	10/10/03	86	Genomic			99 %
ss1132161	KWOK|OVLP-000804-370525		rev/T	A/C	agctgatgggtattataacctcccataaaa	aggaaaacactctatcatccccaaatgtag	09/02/00	10/10/03	86	Genomic			99 %
ss13178381	SC_SNP|NT_009952.13_5502429		fwd/B	G/T	ctacatttggggatgatagagtgttttcct	ttttatgggaggttataatacccatcagct	10/22/03	10/31/03	119	Genomic			unknown
ss21139340	SSAHASNP|WGSA-200403-chr13.chr13.NT_009952.14_5502430		fwd/B	G/T	ctacatttggggatgatagagtgttttcct	ttttatgggaggttataatacccatcagct	03/19/04	03/19/04	121	Genomic			unknown
ss43497851	ABI|hCV3157395		fwd/B	G/T	ctacatttggggatgatagagtgttttcct	ttttatgggaggttataatacccatcagct	07/18/05	11/03/06	126	Genomic			unknown
ss69142977	PERLEGEN|PGP13184363		fwd/B	G/T	ctacatttggggatgatagagtgttttcct	ttttatgggaggttataatacccatcagct	01/30/07	08/14/07	127	Genomic			unknown

Fasta sequence   (Legend)

 TGTGATATAG TTTTGTCAAA GAGTTAATAC ATATGCTTCA ATATTGAACT GCTGAATTTA
 TCTAGGAGAG TTTCTATACA AAGTCAAGTC CTGATCACTG TTACAATCTT AAATTAACCA
 CTTTCTCCTT GAGAAAAAAT GAAGTATAGC AGTGATCTGT GGTGAAAAGC TCTAAGCAAT
 CCTCACATGT GAGATTCATT TCAGAGACCT GCAGTTAGTT GAAGTAAGTA ATGCCATTCA
 GTTTTGAGGA AATGGACAAG TGAATGTATA CTACATTTGG GGATGATAGA GTGTTTTCCT
 K
 TTTTATGGGA GGTTATAATA CCCATCAGCT TCATTCTAGA GGAGTTAAGC CAAACACATC
 AATAGGTCAA ATTGGTGGCC AAGATTAAGT CTATTCTTCA TTATAAGAGT GAAGCAATTA
 TTTTGGCAAG ATTTCTTCTC CTGCAGGCAT TTTTAAAGAG GTGATTGATA TGATTATTTG
 TGTGCACAGA CATTCTTCAA AGACTAGGAG AGCCATACAG ACTATTTTAA TATCATGACA
 GTCCTGTAAA ACTGTGTGAA ATCACCTATG TGCTGATCAA AAGAGGTGGA ATTCCTTTGT

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_009952->NM_004466 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	G/G	G/T	T/T	HWP	G	T
ss43497851	HapMap-CEU	European	120	IG	0.083	0.533	0.383	0.200	0.350	0.650
	HapMap-HCB	Asian	90	IG	0.156	0.400	0.444	0.403	0.356	0.644
	HapMap-JPT	Asian	88	IG	0.068	0.659	0.273	0.020	0.398	0.602
	HapMap-YRI	Sub-Saharan African	120	IG	0.117	0.417	0.467	0.752	0.325	0.675
	AoD_African_American		90	AF					0.380	0.620
	AoD_Caucasian		92	AF					0.340	0.660
ss69142977	HapMap-CEU	European	120	GF	0.083	0.600	0.317		0.383	0.617
	HapMap-HCB	Asian	90	GF	0.111	0.600	0.289		0.411	0.589
	HapMap-JPT	Asian	90	GF	0.067	0.667	0.267		0.400	0.600
	HapMap-YRI	Sub-Saharan African	120	GF	0.100	0.617	0.283		0.408	0.592

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	UNKNOWN