BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




Repeat sequence:
   SW  perc perc perc  query     position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence  begin  end (left)    repeat   class/family  begin  end (left)

  188   4.5  0.0  0.0  A01i21      729  750  (246) +  (A)n     Simple_repeat     1   22    (0)  

Alignments:
 188  4.55 0.00 0.00  A01i21      729   750 (246)    (A)n#Simple_repeat        1    22 (158)  

  A01i21             729 ANAAAAAAAAAAAAAAAAAAAA 750
                          ?                    
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAA 22

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 22), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>A01i21
NNNNNNNNNNNTANNTNTGGACTCCAGGCCGTGGTGGNCGCTCTAGAACT
AGTGGATCCCCCGGGCTGCAGGNATTCGGCACGNGGTCTTTGCGACTTCG
TAAGCGTTTAGCTGCCAGCGTCTTGAAATGCGGCAAGAGAAAGGTTTGGT
TAGATCCCAACGAGACCTCTGAGATCGAGATGGCCAACTCTCGTCAACAA
ATCCGCAAGTTAGTCAAGGACGGTTTGATCATCCGTAAGCCCAACAAGAT
TCACTCGCGTGCTCGCGTTCGTGCCAGAACCGAANCCAAGCGAAAGGGCA
GACACATGGGTTTTGGTAAGAGAAAGGGTACCAAGGGAAGCCAGAATGCC
CACCAAGGTCCTCTGGATCCGCANAATGCNTGTTTTGCGCANAATGTTGA
ANAAATACCGCGCCCNAAAGAAGATCGACNAATTCTTGTACCACNAGTTG
TNCTTGAAAGGTCAAGGGTNACGTCTTCAANAACAAGCGTGTGTTGATGG
AACACATCTTCCAAANCCAAGGCTGAAAAGCAACGCNACAAGAACCTCNA
AAAACNAGCCAATGCTCNCCGTTTGAAGAACCAAGCCANACNTNAAAAAC
NTTCAAAGAANGTCCCTGAACGCANAAAGTTGGGTTTCCCCGAAAAAACT
GAAGACAACCCCNANANACTAANCCCGCCAANAAATAATTCCNCTTCTCT
GTCAAATAATAAAACCCNAACTTTATTNNNNNNNNNNNNNNNNNNNNNNN
CCCANGGGGGGCCCGTNCCNATTNCCCCCAANNTGATCCTNTTANAATTC
CCNGGCCGTCNTTTTANACTCCTNACTGGGAAAACCCNGGCTTTCCCCNC
TTAACCCCTNGNACNAATCCCCTTTCCCCNCTNGGNTTATACNAAAAGGC
CNCCCNTTNCCCNNCCNANNTTNCCCNCCCNAAATGNNAAAGGCAANTNT
AACCTTTAAANTTNTTNAAATCCCCTTNAATTTTTTNANCCCCCCC

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:          1
total length:     996 bp
GC level:       47.46 %
bases masked       22 bp (  2.21 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:               0           0 bp     0.00 %
      ALUs           0           0 bp     0.00 %
      MIRs           0           0 bp     0.00 %

LINEs:               0           0 bp     0.00 %
      LINE1          0           0 bp     0.00 %
      LINE2          0           0 bp     0.00 %

LTR elements:        0           0 bp     0.00 %
      MaLRs          0           0 bp     0.00 %
      Retrov.        0           0 bp     0.00 %
      MER4_group     0           0 bp     0.00 %

DNA elements:        0           0 bp     0.00 %
      MER1_type      0           0 bp     0.00 %
      MER2_type      0           0 bp     0.00 %
      Mariners       0           0 bp     0.00 %

Unclassified:        0           0 bp     0.00 %

Total interspersed repeats:      0 bp     0.00 %


Small RNA:           0           0 bp     0.00 %

Satellites:          0           0 bp     0.00 %
Simple repeats:      1          22 bp     2.21 %
Low complexity:      0           0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version  05/05/99               default
ProcessRepeats version  05/05/99
Repbase version 3.04


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  A01i21
        (996 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 2 Sequences     : less than 2 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 497 83 |=========================================
   6310 414 55 |===========================
   3980 359 52 |==========================
   2510 307 69 |==================================
   1580 238 55 |===========================
   1000 183 37 |==================
    631 146 46 |=======================
    398 100 26 |=============
    251  74 12 |======
    158  62  6 |===
    100  56  5 |==
   63.1  51  4 |==
   39.8  47  3 |=
   25.1  44  0 |
   15.8  44  1 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 43  <<<<<<<<<<<<<<<<<
   10.0  43  1 |:
   6.31  42  0 |
   3.98  42  2 |=
   2.51  40  1 |:
   1.58  39  1 |:
   1.00  38  1 |:
   0.63  37  1 |:
   0.40  36  1 |:
   0.25  35  1 |:
   0.16  34  1 |:
   0.10  33  1 |:
  0.063  32  2 |=


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|7291886|gb|AAF47305.1|(AE003465) RpL19 gene produc... +3   322  1.6e-50   4
gi|548751|sp|P36241|RL19_DROME60S RIBOSOMAL PROTEIN L... +3   315  1.2e-48   4
gi|4506609ref|NP_000972.1| ribosomal protein L19 >gi|... +3   330  9.2e-48   3
gi|6677773ref|NP_033104.1| ribosomal protein L19 >gi|... +3   330  9.2e-48   3
gi|3122680|sp|O02639|RL19_CAEELPROBABLE 60S RIBOSOMAL... +3   301  1.1e-46   4
gi|6319444ref|NP_009526.1| Ribosomal protein L19B (YL... +3   285  1.1e-46   4
gi|602897|emb|CAA54504.1|(X77291) ribosomal protein L... +3   285  1.1e-46   4
gi|132736|sp|P14329|RL19_DICDI60S RIBOSOMAL PROTEIN L... +3   261  5.7e-43   4
gi|7490016|pir||T4107160S ribosomal protein L19 - fis... +3   316  8.6e-40   2
gi|6174952|sp|P05734|RL19_SCHPO60S RIBOSOMAL PROTEIN ... +3   314  1.4e-39   2
gi|2119139|pir||A56846ribosomal protein L19 - rat        +3   330  2.3e-39   2
gi|2760155|dbj|BAA24181.1|(AB010048) ribosomal protei... +3   306  9.7e-39   2
gi|1710506|sp|P49693|RL19_ARATH60S RIBOSOMAL PROTEIN L19 +3   318  1.6e-38   2
gi|5441539|emb|CAB46824.1|(AJ388522) Ribosomal protei... +3   200  8.3e-34   3
gi|7440943|pir||T01426ribosomal protein L19.T2H3.3 - ... +3   346  1.3e-30   1
gi|7268983|emb|CAB80716.1|(AL161494) putative ribosom... +3   346  1.3e-30   1
gi|6056425|gb|AAF02889.1|AC009525_23(AC009525) Putati... +3   334  2.4e-29   1
gi|6094024|sp|O59437|RL19_PYRHO50S RIBOSOMAL PROTEIN ... +3   223  5.2e-25   2
gi|7440948|pir||F75145lsu ribosomal protein l19e (rpl... +3   221  6.6e-25   2
gi|3914682|sp|O28372|RL19_ARCFU50S RIBOSOMAL PROTEIN ... +3   218  4.0e-23   2
gi|1350677|sp|Q08066|RL19_MAIZE60S RIBOSOMAL PROTEIN L19 +3   248  3.1e-20   1
gi|7440944|pir||T03648probable ribosomal protein L19 ... +3   248  3.1e-20   1
gi|475257|gb|AAA18552.1|(M95065) putative ribosomal p... +3   246  5.1e-20   1
gi|1710507|sp|P54043|RL19_METJA50S RIBOSOMAL PROTEIN ... +3   192  1.8e-19   2
gi|132740|sp|P14024|RL19_METVA50S RIBOSOMAL PROTEIN L... +3   186  7.5e-19   2
gi|3914710|sp|O26129|RL19_METTH50S RIBOSOMAL PROTEIN ... +3   176  1.3e-12   1
gi|6685879|sp|Q9YF93|RL19_AERPE50S RIBOSOMAL PROTEIN ... +3   141  8.5e-12   2
gi|132738|sp|P14119|RL19_HALMA50S RIBOSOMAL PROTEIN L... +3   167  1.3e-11   1
gi|3914709|sp|O05639|RL19_SULAC50S RIBOSOMAL PROTEIN ... +3   128  2.3e-10   2
gi|6015776|emb|CAB57603.1|(Y18930) ribosomal protein ... +3   108  9.6e-09   2
gi|560554|gb|AAB31222.1|(S71728) truncated protein [S... -3    83  0.041     1
gi|560556|gb|AAB31223.1|(S71730) influenza virus hema... -3    83  0.041     1
gi|762925|emb|CAA59990.1|(X85998) elastin like protei... +1    81  0.066     1
gi|6539652|gb|AAF15968.1|AF106917_1(AF106917) ribosom... +2    78  0.14      1
gi|82823|pir||S10050ribosomal protein L19.e - fission... +3    76  0.22      1
gi|773414|gb|AAB05989.1|(U23751) beta galactosidase [... -3    83  0.28      1
gi|554467|gb|AAA41503.1|(M30265) ribosomal protein L1... +2    73  0.42      1
gi|7489187|pir||T02229protein BYJ15 - common tobacco ... +3    87  0.57      1
gi|560560|gb|AAB31225.1|(S71745) influenza virus hema... -2    69  0.76      1
gi|560558|gb|AAB31224.1|(S71742) influenza virus hema... -2    67  0.90      1
gi|7489188|pir||T02232protein BYJ6 - common tobacco (... +3    83  0.93      1
gi|7384996|gb|AAF61634.1|(AF153422) lacZ [Cloning vec... -3    83  0.97      1
gi|3402817|emb|CAA07704.1|(AJ007829) lacZ' [Cloning v... +1    74  0.9995    1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|7291886             |    ______________       _______                  
gi|548751              |    ______________       _______                  
gi|4506609             |    ______________                                
gi|6677773             |    ______________                                
gi|3122680             |    ______________       _______                  
gi|6319444             |    _____________        _______                  
gi|602897              |    _____________        _______                  
gi|132736              |    _____________        _____                    
gi|7490016             |    _____________        ________                 
gi|6174952             |    _____________        ________                 
gi|2119139             |    ______________                                
gi|2760155             |    _____________        ________                 
gi|1710506             |    _____________                                 
gi|5441539             |        __________                                
gi|7440943             |    ____________________________                  
gi|7268983             |    ____________________________                  
gi|6056425             |    ____________________________                  
gi|6094024             |    _____________                                 
gi|7440948             |    _____________                                 
gi|3914682             |    ______________                                
gi|1350677             |    __________                                    
gi|7440944             |    __________                                    
gi|475257              |    __________                                    
gi|1710507             |    ______________                                
gi|132740              |    ______________                                
gi|3914710             |    ______________                                
gi|6685879             |    _____________                                 
gi|132738              |    ______________                                
gi|3914709             |    ______________                                
gi|6015776             |    ______________                                
gi|82823               |    _____                                         
gi|7489187             | ____                                             
gi|7489188             | ____                                             
                        __________________________________________________
Query sequence:        |                      |                      |    | 332
                       0                    150                    300


Locus_ID                Frame 2 Hits
gi|7291886             |                      _____                       
gi|548751              |                      _____                       
gi|4506609             |                      _____                       
gi|6677773             |                      _____                       
gi|3122680             |                      ____                        
gi|6319444             |                       ____                       
gi|602897              |                       ____                       
gi|132736              |                      _____                       
gi|7490016             |                      ____                        
gi|6174952             |                      ____                        
gi|2760155             |                      ____                        
gi|5441539             |                      ____                        
gi|7440943             |                      _________                   
gi|7268983             |                      _________                   
gi|6056425             |                      _________                   
gi|6539652             |                      _____                       
gi|554467              |                      ____                        
                        __________________________________________________
Query sequence:        |                      |                      |    | 332
                       0                    150                    300


Locus_ID                Frame 1 Hits
gi|7291886             |                 _______                          
gi|548751              |                 _______                          
gi|4506609             |                 _______                          
gi|6677773             |                 _______                          
gi|3122680             |               _________                          
gi|6319444             |                ________                          
gi|602897              |                ________                          
gi|132736              |                ________                          
gi|7490016             |                ____________                      
gi|6174952             |                ____________                      
gi|2119139             |                 _________                        
gi|2760155             |                ____________                      
gi|1710506             |                ______                            
gi|5441539             |                 _______                          
gi|7440943             |                ________                          
gi|7268983             |                ________                          
gi|6056425             |                ________                          
gi|6094024             |                ________                          
gi|7440948             |                _________                         
gi|3914682             |                 ________                         
gi|1710507             |                 ________                         
gi|132740              |                ________                          
gi|6685879             |                 _______                          
gi|3914709             |                 _______                          
gi|6015776             |                 _______                          
gi|762925              | ____                                             
gi|3402817             | ____                                             
Prosite Hits:                               __                            
                        __________________________________________________
Query sequence:        |                      |                      |    | 332
                       0                    150                    300
__________________
Prosite hits:
   TYR_PHOSPHO_SITE     Tyrosine kinase phosphorylation site.    140..147
__________________


Locus_ID                Frame -2 Hits
gi|560560              | ____                                             
gi|560558              | ___                                              
                        __________________________________________________
Query sequence:        |                      |                      |    | 332
                       0                    150                    300


Locus_ID                Frame -3 Hits
gi|560554              | ____                                             
gi|560556              | ____                                             
gi|773414              | ____                                             
gi|7384996             | ____                                             
                        __________________________________________________
Query sequence:        |                      |                      |    | 332
                       0                    150                    300


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|7291886|gb|AAF47305.1|  (AE003465) RpL19 gene product [Drosophila
            melanogaster]
            Length = 203

Frame  3 hits (HSPs):   ______________________             ___________    
Frame  2 hits (HSPs):                                 _______             
Frame  1 hits (HSPs):                        ___________                  
                        __________________________________________________
Database sequence:     |            |           |           |            || 203
                       0           50         100         150          200

  Plus Strand HSPs:

 Score = 322 (113.3 bits), Expect = 1.6e-50, Sum P(4) = 1.6e-50
 Identities = 61/86 (70%), Positives = 72/86 (83%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             SL+L+KRLAASVL+CGK+KVWLDPNE +EI   NSRQ IRKL+KDGLII+KP  +HSR R
Sbjct:     3 SLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTKGSQ 344
             VR  TE +RKGRH GFGKRKGT  ++
Sbjct:    63 VRKNTEARRKGRHCGFGKRKGTANAR 88

 Score = 129 (45.4 bits), Expect = 1.6e-50, Sum P(4) = 1.6e-50
 Identities = 25/43 (58%), Positives = 31/43 (72%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             ARMPTK+LW++   VLR +L KYR  KKID  LYH L +K +G
Sbjct:    87 ARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKG 129

 Score = 64 (22.5 bits), Expect = 1.6e-50, Sum P(4) = 1.6e-50
 Identities = 14/24 (58%), Positives = 17/24 (70%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQG*K 529
             K KG VF NKRVLME+I + +  K
Sbjct:   126 KCKGNVFKNKRVLMEYIHKKKAEK 149

 Score = 55 (19.4 bits), Expect = 1.6e-50, Sum P(4) = 1.6e-50
 Identities = 15/41 (36%), Positives = 21/41 (51%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLK-NQAXXXKXSKXVPERXKL 632
             K KAEKQR K L   A A R K  +A   +  +   ++ +L
Sbjct:   144 KKKAEKQRSKMLADQAEARRQKVREARKRREERIATKKQEL 184


 >gi|548751|sp|P36241|RL19_DROME  60S RIBOSOMAL PROTEIN L19
            >gi|1079135|pir||A61627 ribosomal protein L19 - fruit fly
            (Drosophila melanogaster) >gi|400448|emb|CAA52784.1| (X74776)
            ribosomal protein L19 [Drosophila melanogaster]
            Length = 203

Frame  3 hits (HSPs):   ______________________             ___________    
Frame  2 hits (HSPs):                                 _______             
Frame  1 hits (HSPs):                        ___________                  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |           |           |            || 203
                       0           50         100         150          200
__________________

Annotated Domains:
   BLOCKS               BL00526A: Ribosomal protein L19e protein 4..46
   BLOCKS               BL00526B: Ribosomal protein L19e protein 53..99
   BLOCKS               BL00526C: Ribosomal protein L19e protein 100..142
   DOMO                 DM01467: RIBOSOMALPROTEINL19E            1..147
   DOMO                 DM04451: RIBOSOMALPROTEINL19E            149..202
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   2..149
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   2..95
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   97..151
   PRODOM               PD020278: RL19(4)                        153..192
   PROSITE              RIBOSOMAL_L19E: Ribosomal protein L19e s 62..110
__________________


  Plus Strand HSPs:

 Score = 315 (110.9 bits), Expect = 1.2e-48, Sum P(4) = 1.2e-48
 Identities = 60/86 (69%), Positives = 71/86 (82%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             SL+L+KRLAASVL+CGK+KVWLDPNE +EI   NSRQ IRKL+KDGLII+KP  +HSR R
Sbjct:     3 SLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTKGSQ 344
             VR  TE +RK RH GFGKRKGT  ++
Sbjct:    63 VRKNTEARRKDRHCGFGKRKGTANAR 88

 Score = 118 (41.5 bits), Expect = 1.2e-48, Sum P(4) = 1.2e-48
 Identities = 23/43 (53%), Positives = 29/43 (67%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             ARMPTK+LW++     R +L KYR  KKID  LYH L +K +G
Sbjct:    87 ARMPTKLLWMQRQPFCRRLLKKYRDSKKIDRHLYHDLYMKCKG 129

 Score = 64 (22.5 bits), Expect = 1.2e-48, Sum P(4) = 1.2e-48
 Identities = 14/24 (58%), Positives = 17/24 (70%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQG*K 529
             K KG VF NKRVLME+I + +  K
Sbjct:   126 KCKGNVFKNKRVLMEYIHKKKAEK 149

 Score = 55 (19.4 bits), Expect = 1.2e-48, Sum P(4) = 1.2e-48
 Identities = 15/41 (36%), Positives = 21/41 (51%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLK-NQAXXXKXSKXVPERXKL 632
             K KAEKQR K L   A A R K  +A   +  +   ++ +L
Sbjct:   144 KKKAEKQRSKMLADQAEARRQKVREARKRREERIATKKQEL 184


 >gi|4506609  ref|NP_000972.1| ribosomal protein L19
            >gi|132739|sp|P14118|RL19_HUMAN 60S RIBOSOMAL PROTEIN L19
            >gi|71265|pir||R5RT19 ribosomal protein L19 - rat
            >gi|477424|pir||A48992 ribosomal protein L19 - human
            >gi|36128|emb|CAA45090.1| (X63527) ribosomal protein L19 [Homo
            sapiens] >gi|206726|gb|AAA42071.1| (J02650) ribosomal protein L19
            [Rattus norvegicus] >gi|298486|gb|AAB25672.1| (S56985) ribosomal
            protein L19 [human, breast cancer cell line, MCF-7, Peptide, 196
            aa] [Homo sapiens] >gi|1154899|emb|CAA57685.1| (X82202) ribosomal
            protein L19 [Rattus norvegicus]
            Length = 196

Frame  3 hits (HSPs):   _______________________                           
Frame  2 hits (HSPs):                                  ________           
Frame  1 hits (HSPs):                        ____________                 
                        __________________________________________________
Database sequence:     |            |            |            |           | 196
                       0           50          100          150

  Plus Strand HSPs:

 Score = 330 (116.2 bits), Expect = 9.2e-48, Sum P(3) = 9.2e-48
 Identities = 63/85 (74%), Positives = 73/85 (85%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             LRL+KRLA+SVL+CGK+KVWLDPNET+EI  ANSRQQIRKL+KDGLIIRKP  +HSRAR 
Sbjct:     4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query:   270 RARTEXKRKGRHMGFGKRKGTKGSQ 344
             R  T  +RKGRHMG GKRKGT  ++
Sbjct:    64 RKNTLARRKGRHMGIGKRKGTANAR 88

 Score = 128 (45.1 bits), Expect = 9.2e-48, Sum P(3) = 9.2e-48
 Identities = 24/43 (55%), Positives = 30/43 (69%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             ARMP KV W+R M +LR +L +YR  KKID  +YH L LK +G
Sbjct:    87 ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKG 129

 Score = 78 (27.5 bits), Expect = 9.2e-48, Sum P(3) = 9.2e-48
 Identities = 16/25 (64%), Positives = 19/25 (76%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQG*KA 532
             KVKG VF NKR+LMEHI + +  KA
Sbjct:   126 KVKGNVFKNKRILMEHIHKLKADKA 150


 >gi|6677773  ref|NP_033104.1| ribosomal protein L19
            >gi|132741|sp|P22908|RL19_MOUSE 60S RIBOSOMAL PROTEIN L19
            >gi|91271|pir||A36554 ribosomal protein L19 - mouse
            >gi|198643|gb|AAB48630.1| (M62952) Mus musculus ribosomal protein
            L19
            Length = 196

Frame  3 hits (HSPs):   _______________________                           
Frame  2 hits (HSPs):                                  ________           
Frame  1 hits (HSPs):                        ____________                 
                        __________________________________________________
Database sequence:     |            |            |            |           | 196
                       0           50          100          150

  Plus Strand HSPs:

 Score = 330 (116.2 bits), Expect = 9.2e-48, Sum P(3) = 9.2e-48
 Identities = 63/85 (74%), Positives = 73/85 (85%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             LRL+KRLA+SVL+CGK+KVWLDPNET+EI  ANSRQQIRKL+KDGLIIRKP  +HSRAR 
Sbjct:     4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query:   270 RARTEXKRKGRHMGFGKRKGTKGSQ 344
             R  T  +RKGRHMG GKRKGT  ++
Sbjct:    64 RKNTLARRKGRHMGIGKRKGTANAR 88

 Score = 128 (45.1 bits), Expect = 9.2e-48, Sum P(3) = 9.2e-48
 Identities = 24/43 (55%), Positives = 30/43 (69%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             ARMP KV W+R M +LR +L +YR  KKID  +YH L LK +G
Sbjct:    87 ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKG 129

 Score = 78 (27.5 bits), Expect = 9.2e-48, Sum P(3) = 9.2e-48
 Identities = 16/25 (64%), Positives = 19/25 (76%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQG*KA 532
             KVKG VF NKR+LMEHI + +  KA
Sbjct:   126 KVKGNVFKNKRILMEHIHKLKADKA 150


 >gi|3122680|sp|O02639|RL19_CAEEL  PROBABLE 60S RIBOSOMAL PROTEIN L19
            >gi|7495739|pir||T29135 hypothetical protein C09D4.5 -
            Caenorhabditis elegans >gi|2076889|gb|AAB53979.1| (AF002196) strong
            similarity to 60S ribosome protein L19 [Caenorhabditis elegans]
            Length = 198

Frame  3 hits (HSPs):   ______________________              ___________   
Frame  2 hits (HSPs):                                  ______             
Frame  1 hits (HSPs):                      ______________                 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |            |           |            |            | 198
                       0           50         100          150
__________________

Annotated Domains:
   BLOCKS               BL00526A: Ribosomal protein L19e protein 4..46
   BLOCKS               BL00526B: Ribosomal protein L19e protein 53..99
   BLOCKS               BL00526C: Ribosomal protein L19e protein 100..142
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   2..149
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   2..95
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   97..150
   PRODOM               PD020278: RL19(4)                        153..192
   PROSITE              RIBOSOMAL_L19E: Ribosomal protein L19e s 62..110
__________________


  Plus Strand HSPs:

 Score = 301 (106.0 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 57/86 (66%), Positives = 69/86 (80%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             +LRL+KRLA++VLKCGK +VWLDPNE SEI  ANSRQ IR+LV DGLIIRKP  +HSR R
Sbjct:     3 NLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTKGSQ 344
              R   E +RKGRH G+GKR+GT  ++
Sbjct:    63 AREYEEARRKGRHTGYGKRRGTANAR 88

 Score = 133 (46.8 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 26/50 (52%), Positives = 32/50 (64%), Frame = +1

Query:   319 RERVPREARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             + R    ARMP K LWIR M VLR +L +YR  KK+D  LYH L L+ +G
Sbjct:    80 KRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKG 129

 Score = 52 (18.3 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 14/41 (34%), Positives = 21/41 (51%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLKN-QAXXXKXSKXVPERXKL 632
             K K E +R K L   A A R KN ++   +  + V +R +L
Sbjct:   144 KKKTENKRAKQLADQAQARRDKNKESRKRREERQVVKRAEL 184

 Score = 47 (16.5 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 9/19 (47%), Positives = 14/19 (73%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQ 514
             + KG  F NK+ L+E+IF+
Sbjct:   126 RAKGNNFKNKKNLIEYIFK 144


 >gi|6319444  ref|NP_009526.1| Ribosomal protein L19B (YL14) (L23B) (rpl5L);
            Rpl19bp >gi|6319559 ref|NP_009641.1|| Ribosomal protein L19A (L23A)
            (rpl5L) (YL14); Rpl19ap >gi|585870|sp|P05735|RL19_YEAST 60S
            RIBOSOMAL PROTEIN L19 (L23) (YL14) (RP33) (RP15L)
            >gi|625515|pir||S44597 ribosomal protein L19.e, cytosolic - yeast
            (Saccharomyces cerevisiae) >gi|431845|dbj|BAA04155.1| (D17337)
            ribosomal protein YL14 [Saccharomyces cerevisiae]
            >gi|431846|dbj|BAA04156.1| (D17338) ribosomal protein YL14
            [Saccharomyces cerevisiae] >gi|531747|emb|CAA85322.1| (Z36751)
            ribosomal protein YL19 [Saccharomyces cerevisiae]
            >gi|536029|emb|CAA84846.1| (Z35788) ORF YBL027w [Saccharomyces
            cerevisiae] >gi|559805|gb|AAB60318.1| (U16015) ribosomal protein
            YL19 [Saccharomyces cerevisiae] >gi|1870098|emb|CAA85030.1|
            (Z35953) ORF YBR084c-a [Saccharomyces cerevisiae]
            >gi|1870099|emb|CAA85032.1| (Z35954) ORF YBR084c-a [Saccharomyces
            cerevisiae]
            Length = 189

Frame  3 hits (HSPs):   _______________________              ___________  
Frame  2 hits (HSPs):                                    ______           
Frame  1 hits (HSPs):                         ____________                
                        __________________________________________________
Database sequence:     |            |             |            |          | 189
                       0           50           100          150

  Plus Strand HSPs:

 Score = 285 (100.3 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 54/83 (65%), Positives = 67/83 (80%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             +LR +KRLAASV+  GKRKVWLDPNETSEI  ANSR  IRKLVK+G I++K   +HS++R
Sbjct:     3 NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTK 335
              RA  + KR+GRH G+GKRKGT+
Sbjct:    63 TRAHAQSKREGRHSGYGKRKGTR 85

 Score = 126 (44.4 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 24/45 (53%), Positives = 32/45 (71%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             REAR+P++V+WIR + VLR +L KYR   KID  LYH L  + +G
Sbjct:    85 REARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKG 129

 Score = 68 (23.9 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 15/37 (40%), Positives = 23/37 (62%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLKNQAXXXKXSKXVPER 623
             + KA+ QR K L + A A RLKN+A   + ++ V E+
Sbjct:   144 QAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEK 180

 Score = 54 (19.0 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 10/19 (52%), Positives = 13/19 (68%), Frame = +2

Query:   464 KGXVFXNKRVLMEHIFQXQ 520
             KG  F +KR L+EHI Q +
Sbjct:   128 KGNAFKHKRALVEHIIQAK 146


 >gi|602897|emb|CAA54504.1|  (X77291) ribosomal protein L19 [Saccharomyces
            cerevisiae]
            Length = 189

Frame  3 hits (HSPs):   _______________________              ___________  
Frame  2 hits (HSPs):                                    ______           
Frame  1 hits (HSPs):                         ____________                
                        __________________________________________________
Database sequence:     |            |             |            |          | 189
                       0           50           100          150

  Plus Strand HSPs:

 Score = 285 (100.3 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 54/83 (65%), Positives = 67/83 (80%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             +LR +KRLAASV+  GKRKVWLDPNETSEI  ANSR  IRKLVK+G I++K   +HS++R
Sbjct:     3 NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTK 335
              RA  + KR+GRH G+GKRKGT+
Sbjct:    63 TRAHAQSKREGRHSGYGKRKGTR 85

 Score = 126 (44.4 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 24/45 (53%), Positives = 32/45 (71%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             REAR+P++V+WIR + VLR +L KYR   KID  LYH L  + +G
Sbjct:    85 REARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKG 129

 Score = 68 (23.9 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 15/37 (40%), Positives = 23/37 (62%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLKNQAXXXKXSKXVPER 623
             + KA+ QR K L + A A RLKN+A   + ++ V E+
Sbjct:   144 QAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEK 180

 Score = 54 (19.0 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
 Identities = 10/19 (52%), Positives = 13/19 (68%), Frame = +2

Query:   464 KGXVFXNKRVLMEHIFQXQ 520
             KG  F +KR L+EHI Q +
Sbjct:   128 KGNAFKHKRALVEHIIQAK 146


 >gi|132736|sp|P14329|RL19_DICDI  60S RIBOSOMAL PROTEIN L19 (VEGETATIVE SPECIFIC
            PROTEIN V14) (22 KD CALMODULIN-BINDING PROTEIN)
            >gi|71266|pir||R5DO9E ribosomal protein L19.e - slime mold
            (Dictyostelium discoideum) >gi|295737|emb|CAA33443.1| (X15383) V14
            [Dictyostelium discoideum] >gi|443591|gb|AAA33247.1| (L27657)
            ribosomal protein [Dictyostelium discoideum]
            Length = 186

Frame  3 hits (HSPs):   _______________________               _______     
Frame  2 hits (HSPs):                                    ______           
Frame  1 hits (HSPs):                         _____________               
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |             |            |             |         | 186
                       0            50          100           150
__________________

Annotated Domains:
   BLOCKS               BL00526A: Ribosomal protein L19e protein 4..46
   BLOCKS               BL00526B: Ribosomal protein L19e protein 53..99
   BLOCKS               BL00526C: Ribosomal protein L19e protein 100..142
   DOMO                 DM01467: RIBOSOMALPROTEINL19E            1..147
   DOMO                 DM04451: RIBOSOMALPROTEINL19E            149..185
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   2..149
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   3..95
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   97..150
   PRODOM               PD068066: RL19_DICDI                     152..185
   PROSITE              RIBOSOMAL_L19E: Ribosomal protein L19e s 62..110
__________________


  Plus Strand HSPs:

 Score = 261 (91.9 bits), Expect = 5.7e-43, Sum P(4) = 5.7e-43
 Identities = 47/83 (56%), Positives = 62/83 (74%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             SL+L+KRLAAS+LKCGK +VW+DPNE +++ MANSR  +R+L+  G I+RKP  +HSR+R
Sbjct:     3 SLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTK 335
              R     KR GRH G G R GT+
Sbjct:    63 AREHNAAKRLGRHRGAGNRLGTR 85

 Score = 134 (47.2 bits), Expect = 5.7e-43, Sum P(4) = 5.7e-43
 Identities = 26/45 (57%), Positives = 32/45 (71%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             REAR+P+K+LWIR + VLR +L KYR  KKID   Y  L LK +G
Sbjct:    85 REARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKG 129

 Score = 57 (20.1 bits), Expect = 5.7e-43, Sum P(4) = 5.7e-43
 Identities = 11/21 (52%), Positives = 15/21 (71%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQ 520
             K KG VF NKR L+E+I + +
Sbjct:   126 KAKGNVFKNKRTLIEYIVKSK 146

 Score = 45 (15.8 bits), Expect = 5.7e-43, Sum P(4) = 5.7e-43
 Identities = 11/25 (44%), Positives = 14/25 (56%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLKNQA 587
             K K EK R K +   A A R KN++
Sbjct:   144 KSKTEKLREKLIQDQAQARRNKNKS 168


 >gi|7490016|pir||T41071  60S ribosomal protein L19 - fission yeast
            (Schizosaccharomyces pombe) >gi|3560168|emb|CAA20680.1| (AL031525)
            60S ribosomal protein L19B [Schizosaccharomyces pombe]
            Length = 193

Frame  3 hits (HSPs):   ______________________               _____________
Frame  2 hits (HSPs):                                   _____             
Frame  1 hits (HSPs):                         __________________          
                        __________________________________________________
Database sequence:     |            |            |            |           | 193
                       0           50          100          150

  Plus Strand HSPs:

 Score = 316 (111.2 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
 Identities = 61/82 (74%), Positives = 68/82 (82%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             +LR +KRLAASVLKCGKRKVW+DPNE SEI  ANSRQ IRKLVKDGL+IRKPN +HSR R
Sbjct:     3 NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGT 332
             +R     KR GRH G+GKRKGT
Sbjct:    63 IRKTHAAKRLGRHTGYGKRKGT 84

 Score = 133 (46.8 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
 Identities = 28/69 (40%), Positives = 43/69 (62%), Frame = +1

Query:   337 EARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQGXRLQXQ-ACVDGTHLP 513
             EARMP+ V+W+R   VLR +L KYR   KID  LYH L L+ +G   + + A ++  H+ 
Sbjct:    86 EARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIE--HIQ 143

Query:   514 XPRLKSNATR 543
               + ++N T+
Sbjct:   144 RAKAEANRTK 153

 Score = 51 (18.0 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
 Identities = 14/50 (28%), Positives = 26/50 (52%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLKNQAXXXKXSKXVPERXKLGFP--EKTED 656
             + KAE  R K + +  +A R + +A   + +K V E+ +  +   EK E+
Sbjct:   144 RAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEKREQIYTAAEKIEE 193

 Score = 49 (17.2 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
 Identities = 9/17 (52%), Positives = 12/17 (70%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHI 508
             + KG  F +KR L+EHI
Sbjct:   126 EAKGNTFKHKRALIEHI 142


 >gi|6174952|sp|P05734|RL19_SCHPO  60S RIBOSOMAL PROTEIN L19 (YL15)
            >gi|7490052|pir||T40542 60s ribosomal protein, L19 - fission yeast
            (Schizosaccharomyces pombe) >gi|3116132|emb|CAA18881.1| (AL023288)
            60s ribosomal protein, L19 [Schizosaccharomyces pombe]
            >gi|3201578|dbj|BAA28752.1| (AB015169) ribosomal protein L19
            homolog [Schizosaccharomyces pombe]
            Length = 193

Frame  3 hits (HSPs):   ______________________               _____________
Frame  2 hits (HSPs):                                   _____             
Frame  1 hits (HSPs):                         __________________          
Annotated Domains:      _______________________________________           
                        __________________________________________________
Database sequence:     |            |            |            |           | 193
                       0           50          100          150
__________________

Annotated Domains:
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   1..148
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   1..94
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   96..149
__________________


  Plus Strand HSPs:

 Score = 314 (110.5 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
 Identities = 59/82 (71%), Positives = 68/82 (82%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             +LR +KRLAASVLKCGKRKVW+DPNE SEI  ANSRQ +RKL+KDGL+IRKPN +HSR R
Sbjct:     3 NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGT 332
             +R     KR GRH G+GKRKGT
Sbjct:    63 IRKTHAAKRLGRHTGYGKRKGT 84

 Score = 133 (46.8 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
 Identities = 28/69 (40%), Positives = 43/69 (62%), Frame = +1

Query:   337 EARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQGXRLQXQ-ACVDGTHLP 513
             EARMP+ V+W+R   VLR +L KYR   KID  LYH L L+ +G   + + A ++  H+ 
Sbjct:    86 EARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIE--HIQ 143

Query:   514 XPRLKSNATR 543
               + ++N T+
Sbjct:   144 RAKAEANRTK 153

 Score = 51 (18.0 bits), Expect = 4.7e-35, Sum P(3) = 4.7e-35
 Identities = 14/50 (28%), Positives = 26/50 (52%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLKNQAXXXKXSKXVPERXKLGFP--EKTED 656
             + KAE  R K + +  +A R + +A   + +K V E+ +  +   EK E+
Sbjct:   144 RAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEKREQLYTAAEKIEE 193

 Score = 49 (17.2 bits), Expect = 4.7e-35, Sum P(3) = 4.7e-35
 Identities = 9/17 (52%), Positives = 12/17 (70%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHI 508
             + KG  F +KR L+EHI
Sbjct:   126 EAKGNTFKHKRALIEHI 142


 >gi|2119139|pir||A56846  ribosomal protein L19 - rat
            Length = 196

Frame  3 hits (HSPs):   _______________________                           
Frame  1 hits (HSPs):                        _______________              
Annotated Domains:      ______________________________________            
                        __________________________________________________
Database sequence:     |            |            |            |           | 196
                       0           50          100          150
__________________

Annotated Domains:
   DOMO                 DM01467: RIBOSOMALPROTEINL19E            1..148
   PROSITE              RIBOSOMAL_L19E: Ribosomal protein L19e s 62..110
__________________


  Plus Strand HSPs:

 Score = 330 (116.2 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
 Identities = 63/85 (74%), Positives = 73/85 (85%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             LRL+KRLA+SVL+CGK+KVWLDPNET+EI  ANSRQQIRKL+KDGLIIRKP  +HSRAR 
Sbjct:     4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query:   270 RARTEXKRKGRHMGFGKRKGTKGSQ 344
             R  T  +RKGRHMG GKRKGT  ++
Sbjct:    64 RKNTLARRKGRHMGIGKRKGTANAR 88

 Score = 115 (40.5 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
 Identities = 25/56 (44%), Positives = 32/56 (57%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQGXRLQXQACVDGTH 507
             ARMP KV W+R M +LR +L +YR  KKID  +      +GQ   +Q QA   G H
Sbjct:    87 ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMVSQPVPEGQRECVQKQADSHGAH 142


 >gi|2760155|dbj|BAA24181.1|  (AB010048) ribosomal protein L19
            [Schizosaccharomyces pombe]
            Length = 186

Frame  3 hits (HSPs):   _____________________               ______________
Frame  2 hits (HSPs):                                  ______             
Frame  1 hits (HSPs):                       ___________________           
                        __________________________________________________
Database sequence:     |             |            |             |         | 186
                       0            50          100           150

  Plus Strand HSPs:

 Score = 306 (107.7 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
 Identities = 59/77 (76%), Positives = 64/77 (83%), Frame = +3

Query:   102 KRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARVRART 281
             KRLAASVLKCGKRKVW+DPNE SEI  ANSRQ IRKLVKDGL+IRKPN +HSR R+R   
Sbjct:     1 KRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTH 60

Query:   282 EXKRKGRHMGFGKRKGT 332
               KR GRH G+GKRKGT
Sbjct:    61 AAKRLGRHTGYGKRKGT 77

 Score = 133 (46.8 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
 Identities = 28/69 (40%), Positives = 43/69 (62%), Frame = +1

Query:   337 EARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQGXRLQXQ-ACVDGTHLP 513
             EARMP+ V+W+R   VLR +L KYR   KID  LYH L L+ +G   + + A ++  H+ 
Sbjct:    79 EARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIE--HIQ 136

Query:   514 XPRLKSNATR 543
               + ++N T+
Sbjct:   137 RAKAEANRTK 146

 Score = 51 (18.0 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
 Identities = 14/50 (28%), Positives = 26/50 (52%), Frame = +3

Query:   513 KXKAEKQRXKNLXKXANAXRLKNQAXXXKXSKXVPERXKLGFP--EKTED 656
             + KAE  R K + +  +A R + +A   + +K V E+ +  +   EK E+
Sbjct:   137 RAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEKREQIYTAAEKIEE 186

 Score = 49 (17.2 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
 Identities = 9/17 (52%), Positives = 12/17 (70%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHI 508
             + KG  F +KR L+EHI
Sbjct:   119 EAKGNTFKHKRALIEHI 135


 >gi|1710506|sp|P49693|RL19_ARATH  60S RIBOSOMAL PROTEIN L19
            Length = 123

Frame  3 hits (HSPs):   _________________________________                 
Frame  1 hits (HSPs):                                   ______________    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                    |         | 123
                       0                  50                  100
__________________

Annotated Domains:
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   1..123
   PROSITE              RIBOSOMAL_L19E: Ribosomal protein L19e s 59..107
__________________


  Plus Strand HSPs:

 Score = 318 (111.9 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
 Identities = 61/82 (74%), Positives = 68/82 (82%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             L+L+KRL +SVLKCGKRKVWLDPNE S+I MANSRQ IRKLVKDG IIRKP KIHSR+R 
Sbjct:     1 LKLQKRLRSSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 60

Query:   270 RARTEXKRKGRHMGFGKRKGTK 335
             R     KRKGRH G+GKR GT+
Sbjct:    61 RQLNIAKRKGRHSGYGKRNGTR 82

 Score = 119 (41.9 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
 Identities = 23/32 (71%), Positives = 26/32 (81%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKID 429
             REAR+PTKVLW+R M VLR +L KYR  KKID
Sbjct:    82 REARLPTKVLWMRRMRVLRRLLKKYRETKKID 113


 >gi|5441539|emb|CAB46824.1|  (AJ388522) Ribosomal protein [Canis familiaris]
            Length = 113

Frame  3 hits (HSPs):   __________________________                        
Frame  2 hits (HSPs):                                             ________
Frame  1 hits (HSPs):                           ____________________      
                        __________________________________________________
Database sequence:     |                     |                     |      | 113
                       0                    50                   100

  Plus Strand HSPs:

 Score = 200 (70.4 bits), Expect = 8.3e-34, Sum P(3) = 8.3e-34
 Identities = 40/58 (68%), Positives = 45/58 (77%), Frame = +3

Query:   171 EIEMANSRQQIRKLVKDGLIIRKPNKIHSRARVRARTEXKRKGRHMGFGKRKGTKGSQ 344
             EI  ANSRQQI KL+KDGLIIRKP  +HSRAR R  T  +RKGRHMG GKRKGT  ++
Sbjct:     1 EIANANSRQQILKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANAR 58

 Score = 129 (45.4 bits), Expect = 8.3e-34, Sum P(3) = 8.3e-34
 Identities = 24/43 (55%), Positives = 30/43 (69%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             ARMP KV W+R M +LR +L +YR  KKID  +YH L LK +G
Sbjct:    57 ARMPEKVTWMRRMRILRRLLTRYRESKKIDRHMYHSLYLKVKG 99

 Score = 73 (25.7 bits), Expect = 8.3e-34, Sum P(3) = 8.3e-34
 Identities = 14/17 (82%), Positives = 15/17 (88%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHI 508
             KVKG VF NKR+LMEHI
Sbjct:    96 KVKGNVFKNKRILMEHI 112


 >gi|7440943|pir||T01426  ribosomal protein L19.T2H3.3 - Arabidopsis thaliana
            >gi|3377797|gb|AAC28170.1| (AF075597) Similar to 60S ribosome
            protein L19; coded for by A. thaliana cDNA T04719; coded for by A.
            thaliana cDNA H36046; coded for by A. thaliana cDNA T44067; coded
            for by A. thaliana cDNA T14056; coded for by A. thaliana cDNA
            R90691 [Arabidopsis th>
            Length = 200

Frame  3 hits (HSPs):   ______________________________________________    
Frame  2 hits (HSPs):                                  ____________       
Frame  1 hits (HSPs):                        ____________                 
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150

  Plus Strand HSPs:

 Score = 346 (121.8 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 84/183 (45%), Positives = 105/183 (57%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             SL+L+KRLA+SVLKCGKRKVWLDPNE S+I MANSRQ IRKLVKDG IIRKP KIHSR+R
Sbjct:     3 SLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTKGSQNAHQGPLDPXNACFAXNVEXIPRPKE-DRXILVP 443
              R     KRKGRH G+GKRKGT+ ++   +             ++     K+ DR +   
Sbjct:    63 ARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHD 122

Query:   444 XVVLERSRVTSSXTSVC*WNTSSKXKAEKQRXKNLXKXANAXRLKNQAXXXKXSKXVPER 623
               +  +  V  +   +    +  K KAEK R K L     A R KN+A   +      ER
Sbjct:   123 MYMKVKGNVFKNKRVLM--ESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query:   624 XKLG 635
                G
Sbjct:   181 LAKG 184

 Score = 145 (51.0 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 27/45 (60%), Positives = 34/45 (75%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             REAR+PTKVLW+R M VLR +L KYR  KKID  +YH + +K +G
Sbjct:    85 REARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKG 129

 Score = 72 (25.3 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 22/51 (43%), Positives = 27/51 (52%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQG*KATXQEPXKTSQCSPFEEPSXTXKTFKE 610
             KVKG VF NKRVLME I + +  KA  +E   + Q   FE      K  +E
Sbjct:   126 KVKGNVFKNKRVLMESIHKSKAEKA--REKTLSDQ---FEAKRAKNKASRE 171


 >gi|7268983|emb|CAB80716.1|  (AL161494) putative ribosomal protein L19
            [Arabidopsis thaliana]
            Length = 208

Frame  3 hits (HSPs):   ____________________________________________      
Frame  2 hits (HSPs):                                 ___________         
Frame  1 hits (HSPs):                       ___________                   
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 208
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 346 (121.8 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 84/183 (45%), Positives = 105/183 (57%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             SL+L+KRLA+SVLKCGKRKVWLDPNE S+I MANSRQ IRKLVKDG IIRKP KIHSR+R
Sbjct:     3 SLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTKGSQNAHQGPLDPXNACFAXNVEXIPRPKE-DRXILVP 443
              R     KRKGRH G+GKRKGT+ ++   +             ++     K+ DR +   
Sbjct:    63 ARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHD 122

Query:   444 XVVLERSRVTSSXTSVC*WNTSSKXKAEKQRXKNLXKXANAXRLKNQAXXXKXSKXVPER 623
               +  +  V  +   +    +  K KAEK R K L     A R KN+A   +      ER
Sbjct:   123 MYMKVKGNVFKNKRVLM--ESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query:   624 XKLG 635
                G
Sbjct:   181 LAKG 184

 Score = 145 (51.0 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
 Identities = 27/45 (60%), Positives = 34/45 (75%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             REAR+PTKVLW+R M VLR +L KYR  KKID  +YH + +K +G
Sbjct:    85 REARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKG 129

 Score = 72 (25.3 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
 Identities = 22/51 (43%), Positives = 27/51 (52%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQG*KATXQEPXKTSQCSPFEEPSXTXKTFKE 610
             KVKG VF NKRVLME I + +  KA  +E   + Q   FE      K  +E
Sbjct:   126 KVKGNVFKNKRVLMESIHKSKAEKA--REKTLSDQ---FEAKRAKNKASRE 171


 >gi|6056425|gb|AAF02889.1|AC009525_23  (AC009525) Putative ribosomal protein L19
            [Arabidopsis thaliana]
            Length = 214

Frame  3 hits (HSPs):   ___________________________________________       
Frame  2 hits (HSPs):                                ___________          
Frame  1 hits (HSPs):                      ___________                    
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 214
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 334 (117.6 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 81/183 (44%), Positives = 104/183 (56%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             SL+L+KRLAASV+KCGK KVWLDPNE+S+I MANSRQ IRKLVKDG IIRKP KIHSR+R
Sbjct:     3 SLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTKGSQNAHQGPLDPXNACFAXNVEXIPRPKE-DRXILVP 443
              R     K KGRH G+GKRKGT+ ++   +             ++     K+ D+ +   
Sbjct:    63 ARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHD 122

Query:   444 XVVLERSRVTSSXTSVC*WNTSSKXKAEKQRXKNLXKXANAXRLKNQAXXXKXSKXVPER 623
               +  +  V  +   +    +  K KAEK R K L     A R KN+A   +      ER
Sbjct:   123 MYMRVKGNVFKNKRVLM--ESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query:   624 XKLG 635
                G
Sbjct:   181 LAKG 184

 Score = 142 (50.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 26/45 (57%), Positives = 34/45 (75%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             REAR+PTKVLW+R M VLR +L KYR  KKID  +YH + ++ +G
Sbjct:    85 REARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKG 129

 Score = 69 (24.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 21/51 (41%), Positives = 27/51 (52%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQG*KATXQEPXKTSQCSPFEEPSXTXKTFKE 610
             +VKG VF NKRVLME I + +  KA  +E   + Q   FE      K  +E
Sbjct:   126 RVKGNVFKNKRVLMESIHKSKAEKA--REKTLSDQ---FEAKRAKNKASRE 171


 >gi|6094024|sp|O59437|RL19_PYRHO  50S RIBOSOMAL PROTEIN L19E
            >gi|7440945|pir||B71185 probable ribosomal protein L19 - Pyrococcus
            horikoshii >gi|3258190|dbj|BAA30873.1| (AP000007) 150aa long
            hypothetical 50S ribosomal protein L19 [Pyrococcus horikoshii]
            Length = 150

Frame  3 hits (HSPs):   _____________________________                     
Frame  1 hits (HSPs):                               _________________     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 150
                       0               50              100
__________________

Annotated Domains:
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   2..149
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   4..95
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   99..137
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
 Identities = 40/83 (48%), Positives = 61/83 (73%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             +L++++R+AA +LKCG+ +VW+DP +  E+  A +R+ IR+L+K+G+I +KP +  SR R
Sbjct:     3 TLKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTK 335
              R R E K+KGRH G G RKG K
Sbjct:    63 ARIRHEQKKKGRHRGPGSRKGKK 85

 Score = 85 (29.9 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
 Identities = 18/49 (36%), Positives = 27/49 (55%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQGXRLQ 480
             + ARM  K LWI+ +  LR  L K +  KKID   Y  L ++ +G + +
Sbjct:    85 KTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFK 133


 >gi|7440948|pir||F75145  lsu ribosomal protein l19e (rpl19e) PAB2134 -
            Pyrococcus abyssi (strain Orsay) >gi|5457755|emb|CAB49245.1|
            (AJ248284) LSU ribosomal protein L19E (rpl19E) [Pyrococcus abyssi]
            Length = 151

Frame  3 hits (HSPs):   ____________________________                      
Frame  1 hits (HSPs):                              __________________     
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150

  Plus Strand HSPs:

 Score = 221 (77.8 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
 Identities = 39/83 (46%), Positives = 60/83 (72%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             +L++++R+AA +LKCG+ ++W+DP    ++  A +R+ IR+L+K+G+I +KP K  SR R
Sbjct:     3 TLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYR 62

Query:   267 VRARTEXKRKGRHMGFGKRKGTK 335
              R R E K+KGRH G G RKG K
Sbjct:    63 ARIRHEQKKKGRHRGPGSRKGKK 85

 Score = 86 (30.3 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
 Identities = 18/51 (35%), Positives = 28/51 (54%), Frame = +1

Query:   334 REARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQGXRLQXQ 486
             + ARM  K LWI+ +  LR  L K +  KKID   Y  L ++ +G + + +
Sbjct:    85 KTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSK 135


 >gi|3914682|sp|O28372|RL19_ARCFU  50S RIBOSOMAL PROTEIN L19E
            >gi|7440947|pir||B69488 LSU ribosomal protein L19E (rpl19E) homolog
            - Archaeoglobus fulgidus >gi|2648632|gb|AAB89342.1| (AE000971) LSU
            ribosomal protein L19E (rpl19E) [Archaeoglobus fulgidus]
            Length = 149

Frame  3 hits (HSPs):    _____________________________                    
Frame  1 hits (HSPs):                                _________________    
Annotated Domains:       _________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   4..149
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   5..97
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   100..148
__________________


  Plus Strand HSPs:

 Score = 218 (76.7 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
 Identities = 44/85 (51%), Positives = 58/85 (68%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             L L++RLAASVLKCG+ +VW DP    +I  A ++Q IR+L++ G+I RKP    SRAR+
Sbjct:     6 LSLQRRLAASVLKCGENRVWFDPAALEDIATAATKQDIRELIEQGVIKRKPVNGVSRARI 65

Query:   270 RARTEXKRKGRHMGFGKRKGTKGSQ 344
               R   KRKGR  G G RKG KG++
Sbjct:    66 NKRKLQKRKGRRRGHGSRKGAKGAR 90

 Score = 72 (25.3 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
 Identities = 17/50 (34%), Positives = 24/50 (48%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQGXRLQXQA 489
             ARMP K +WI  +  LR  L + +A   +D   Y  L  K +G   +  A
Sbjct:    89 ARMPRKRMWILRIRALRKALRQMKAEGVVDRRTYRILYRKAKGGEFRSVA 138


 >gi|1350677|sp|Q08066|RL19_MAIZE  60S RIBOSOMAL PROTEIN L19
            Length = 62

Frame  3 hits (HSPs):   _________________________________________________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 62
                       0              20              40              60
__________________

Annotated Domains:
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   1..62
__________________


  Plus Strand HSPs:

 Score = 248 (87.3 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 48/61 (78%), Positives = 54/61 (88%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             L+L+KRLAAS LKCGK KVWLDPNE SEI MANSRQ IRKLVKDG II+KP+KIHSR+R 
Sbjct:     1 LKLQKRLAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRC 60

Query:   270 R 272
             +
Sbjct:    61 K 61


 >gi|7440944|pir||T03648  probable ribosomal protein L19 - maize (fragment)
            Length = 63

Frame  3 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |               |              |               |   | 63
                       0              20             40              60

  Plus Strand HSPs:

 Score = 248 (87.3 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 48/61 (78%), Positives = 54/61 (88%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             L+L+KRLAAS LKCGK KVWLDPNE SEI MANSRQ IRKLVKDG II+KP+KIHSR+R 
Sbjct:     1 LKLQKRLAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRC 60

Query:   270 R 272
             +
Sbjct:    61 K 61


 >gi|475257|gb|AAA18552.1|  (M95065) putative ribosomal protein L19 [Zea mays]
            Length = 63

Frame  3 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |               |              |               |   | 63
                       0              20             40              60

  Plus Strand HSPs:

 Score = 246 (86.6 bits), Expect = 5.1e-20, P = 5.1e-20
 Identities = 47/61 (77%), Positives = 54/61 (88%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             ++L+KRLAAS LKCGK KVWLDPNE SEI MANSRQ IRKLVKDG II+KP+KIHSR+R 
Sbjct:     1 MKLQKRLAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRC 60

Query:   270 R 272
             +
Sbjct:    61 K 61


 >gi|1710507|sp|P54043|RL19_METJA  50S RIBOSOMAL PROTEIN L19E
            >gi|2144774|pir||A64359 ribosomal protein L19 - Methanococcus
            jannaschii >gi|1591175|gb|AAB98462.1| (U67497) LSU ribosomal
            protein L19E [Methanococcus jannaschii]
            Length = 151

Frame  3 hits (HSPs):     ____________________________                    
Frame  1 hits (HSPs):                                _________________    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150
__________________

Annotated Domains:
   BLOCKS               BL00526A: Ribosomal protein L19e protein 6..48
   BLOCKS               BL00526B: Ribosomal protein L19e protein 55..101
   BLOCKS               BL00526C: Ribosomal protein L19e protein 102..144
   DOMO                 DM01467: RIBOSOMALPROTEINL19E            1..150
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   4..151
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   5..97
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   101..143
   PROSITE              RIBOSOMAL_L19E: Ribosomal protein L19e s 64..112
__________________


  Plus Strand HSPs:

 Score = 192 (67.6 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
 Identities = 35/83 (42%), Positives = 56/83 (67%), Frame = +3

Query:    96 LRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARVRA 275
             +++R+AA +LKCG  +VW+DP +   ++MA S+  IR L+K+G+I +K  K  S ARV+ 
Sbjct:     8 VQRRMAAEILKCGIERVWIDPTQLDRVKMAMSKDDIRALIKEGVIKKKQKKGISSARVKK 67

Query:   276 RTEXKRKGRHMGFGKRKGTKGSQ 344
               E ++KGR  G G R+G  G++
Sbjct:    68 LKEQRKKGRRRGPGSRRGAAGAR 90

 Score = 63 (22.2 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
 Identities = 15/50 (30%), Positives = 23/50 (46%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQGXRLQXQA 489
             AR P K  W+  +  LR  L + R   KID  +Y  L    +G   + ++
Sbjct:    89 ARTPPKERWMATIRALRKTLKQLRDSGKIDRKVYRKLYRMAKGGAFRSRS 138


 >gi|132740|sp|P14024|RL19_METVA  50S RIBOSOMAL PROTEIN L19E (ORF E)
            >gi|71267|pir||R5MXE ribosomal protein L19.eR - Methanococcus
            vannielii >gi|44766|emb|CAA34698.1| (X16720) ORF e [Methanococcus
            vannielii]
            Length = 149

Frame  3 hits (HSPs):    ____________________________                     
Frame  1 hits (HSPs):                             _________________       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00526A: Ribosomal protein L19e protein 3..45
   BLOCKS               BL00526B: Ribosomal protein L19e protein 52..98
   BLOCKS               BL00526C: Ribosomal protein L19e protein 99..141
   DOMO                 DM01467: RIBOSOMALPROTEINL19E            1..147
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   1..148
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   2..94
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   98..140
   PROSITE              RIBOSOMAL_L19E: Ribosomal protein L19e s 61..109
__________________


  Plus Strand HSPs:

 Score = 186 (65.5 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
 Identities = 35/82 (42%), Positives = 55/82 (67%), Frame = +3

Query:    99 RKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARVRAR 278
             ++R+AA+VL CG  +VW+DP    +++MA ++  IR L+ DG+I++K  K  S AR +  
Sbjct:     6 QRRIAAAVLDCGIDRVWVDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEV 65

Query:   279 TEXKRKGRHMGFGKRKGTKGSQ 344
              E KRKG+  G G R+G KG++
Sbjct:    66 QEQKRKGKRKGPGSRRGAKGAR 87

 Score = 63 (22.2 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
 Identities = 15/48 (31%), Positives = 23/48 (47%), Frame = +1

Query:   325 RVPREARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             R  + AR P K  W+  +  LR +L + R  +KI+   Y  L    +G
Sbjct:    81 RGAKGARTPKKEKWMNTIRPLRTLLKELRENEKIERSSYRKLYRMAKG 128


 >gi|3914710|sp|O26129|RL19_METTH  50S RIBOSOMAL PROTEIN L19E
            >gi|7440946|pir||G69125 ribosomal protein L19 - Methanobacterium
            thermoautotrophicum (strain Delta H) >gi|2621058|gb|AAB84530.1|
            (AE000796) ribosomal protein L19 [Methanobacterium
            thermoautotrophicum]
            Length = 148

Frame  3 hits (HSPs):   ______________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   1..148
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   2..94
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   98..139
__________________


  Plus Strand HSPs:

 Score = 176 (62.0 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 35/86 (40%), Positives = 52/86 (60%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             +L  +KRLAA +LK G  ++W+DP    E+  A +R  +++L+KDG I  KP K  S  R
Sbjct:     2 NLTTQKRLAADILKVGVNRIWIDPERIDEVSRAITRDGVKQLIKDGAIKAKPKKGISSYR 61

Query:   267 VRARTEXKRKGRHMGFGKRKGTKGSQ 344
              +   + K+KGR  G G  KG KG++
Sbjct:    62 SKKIAQQKKKGRRRGPGSIKGAKGAR 87


 >gi|6685879|sp|Q9YF93|RL19_AERPE  50S RIBOSOMAL PROTEIN L19E
            >gi|7440949|pir||C72726 probable ribosomal protein L19 APE0348 -
            Aeropyrum pernix (strain K1) >gi|5103987|dbj|BAA79303.1| (AP000059)
            155aa long hypothetical 50S ribosomal protein L19 [Aeropyrum
            pernix]
            Length = 155

Frame  3 hits (HSPs):   ___________________________                       
Frame  1 hits (HSPs):                               ______________        
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150

  Plus Strand HSPs:

 Score = 141 (49.6 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
 Identities = 31/81 (38%), Positives = 48/81 (59%), Frame = +3

Query:    93 RLRKRLAASVLKCGKRKVWL--DPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRAR 266
             R ++RLAA +L  G+ ++W+  DP    EIE A ++  +R L+K G+I   P K ++   
Sbjct:     4 RFQRRLAAEILGVGESRIWISPDPELREEIEGAVTKADVRALIKRGVIKVLPEKGNAGHA 63

Query:   267 VRARTEXKRKGRHMGFGKRKG 329
              + R   +RKGR  G G+RKG
Sbjct:    64 SKVRHLQRRKGRRRGMGRRKG 84

 Score = 46 (16.2 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
 Identities = 12/43 (27%), Positives = 19/43 (44%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             AR+  K  W+  +  +R  L   R  + ID   Y  L +  +G
Sbjct:    88 ARLDPKERWMHRIRKIRRYLRYLRDKQVIDRKTYRRLYMLAKG 130


 >gi|132738|sp|P14119|RL19_HALMA  50S RIBOSOMAL PROTEIN L19E (HMAL19) (HL24)
            >gi|71268|pir||R5HSH4 ribosomal protein L19.eR - Haloarcula
            marismortui >gi|48866|emb|CAA41289.1| (X58395) ribosomal protein
            [Haloarcula marismortui] >gi|228189|prf||1718307F ribosomal protein
            HL24 [Haloarcula marismortui]
            Length = 149

Frame  3 hits (HSPs):    ______________________________                   
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00526A: Ribosomal protein L19e protein 3..45
   BLOCKS               BL00526B: Ribosomal protein L19e protein 52..98
   BLOCKS               BL00526C: Ribosomal protein L19e protein 99..141
   DOMO                 DM01467: RIBOSOMALPROTEINL19E            1..147
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   1..148
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   2..93
   PRODOM               PD068068: RL19_HALMA                     95..147
   PROSITE              RIBOSOMAL_L19E: Ribosomal protein L19e s 62..110
__________________


  Plus Strand HSPs:

 Score = 167 (58.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 37/90 (41%), Positives = 52/90 (57%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARV 269
             L  +KRLAA VL  GK +VW +P    +I  A +R+ +R+LV +G I  K  K +SR R 
Sbjct:     4 LSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRA 63

Query:   270 RARTEXKRKGRHMGFGKRKGTKGS-QNAHQ 356
             R R + +  G   G G RKG  G+ QN+ +
Sbjct:    64 RERQKKRAYGHQKGAGSRKGKAGARQNSKE 93


 >gi|3914709|sp|O05639|RL19_SULAC  50S RIBOSOMAL PROTEIN L19E
            >gi|2052264|emb|CAA69095.1| (Y07778) ribosomal protein L19E
            [Sulfolobus acidocaldarius]
            Length = 150

Frame  3 hits (HSPs):    _____________________________                    
Frame  1 hits (HSPs):                                _______________      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 150
                       0               50              100
__________________

Annotated Domains:
   PFAM                 Ribosomal_L19e: Ribosomal protein L19e   2..150
   PRODOM               PD004823: RL19(14) O42699(1) O81422(1)   6..96
   PRODOM               PD004822: RL19(13) O23452(1) O42699(1)   100..145
__________________


  Plus Strand HSPs:

 Score = 128 (45.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 28/85 (32%), Positives = 47/85 (55%), Frame = +3

Query:    93 RLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDGLIIRKPNKIHSRARVR 272
             +L++RLAA +   G   +  +P    E+E A +R+ I+KL+K+  +I  P +  S  R++
Sbjct:     5 QLQRRLAADIAGVGLNNIKFNPERLEEVEEALTREDIKKLIKERAVIVNPKRGISSGRLK 64

Query:   273 ARTEXKR-KGRHMGFGKRKGTKGSQ 344
              R   +R KG     G RKG  G++
Sbjct:    65 ERKHKRRSKGEGRKHGSRKGKSGAR 89

 Score = 47 (16.5 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 12/43 (27%), Positives = 18/43 (41%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             AR   K +WI  +  +R  +   R    ID   Y  L  + +G
Sbjct:    88 ARTGDKEIWINKIRKIRRYIRWLRDNNVIDKHTYRLLYKRAKG 130


 >gi|6015776|emb|CAB57603.1|  (Y18930) ribosomal protein L19 (HMAL19) [Sulfolobus
            solfataricus]
            Length = 151

Frame  3 hits (HSPs):   _______________________________                   
Frame  1 hits (HSPs):                               _______________       
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150

  Plus Strand HSPs:

 Score = 108 (38.0 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
 Identities = 30/92 (32%), Positives = 54/92 (58%), Frame = +3

Query:    87 SLRLRKRLAASVLKCGKRKVWLDPNETSEIEMANSRQQIRKLVKDG-LIIRKPNKIHSRA 263
             +L+ +KRLAAS+   G  ++ +  +   +++ + +R +IR L+KDG +I+ K   I S  
Sbjct:     3 NLKAQKRLAASIAGVGINRIKVVEDYIEDVQSSLTRDEIRNLIKDGKIIVLKKVGI-SGG 61

Query:   264 RVRARTEXKR-KGRHMGFGKRKGTKGSQ-NAHQ 356
             R++ R + +  K      G RKG KG++ N+ Q
Sbjct:    62 RLKERRKKRSLKSEGKKSGSRKGKKGARANSKQ 94

 Score = 65 (22.9 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
 Identities = 15/43 (34%), Positives = 22/43 (51%), Frame = +1

Query:   340 ARMPTKVLWIRXMXVLRXMLXKYRAXKKIDXFLYHXLXLKGQG 468
             AR  +K +W++ +  +R  L   R  K ID   Y  L LK +G
Sbjct:    88 ARANSKQMWVKRVRKIRAYLKWLRDHKVIDRHTYRELYLKTKG 130


 >gi|560554|gb|AAB31222.1|  (S71728) truncated protein [Saccharomyces cerevisiae]
            Length = 33

Frame -3 hits (HSPs):               _________________________             
                        __________________________________________________
Database sequence:     |                            |                     | 33
                       0                           20

  Minus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 0.042, P = 0.041
 Identities = 14/17 (82%), Positives = 15/17 (88%), Frame = -3

Query:    82 VPNXCSPGDPLVLERPP 32
             + N CSPGDPLVLERPP
Sbjct:     9 ISNSCSPGDPLVLERPP 25


 >gi|560556|gb|AAB31223.1|  (S71730) influenza virus hemagglutinin 5' epitope
            tag=fusion protein {N-terminal, frame 1} [Saccharomyces
            cerevisiae=yeast, YCpIF15,16,17 cloning vector, Peptide Plasmid
            Synthetic Partial, 45 aa]
            Length = 45

Frame -3 hits (HSPs):                         ___________________         
                        __________________________________________________
Database sequence:     |                     |                     |      | 45
                       0                    20                    40

  Minus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 0.042, P = 0.041
 Identities = 14/17 (82%), Positives = 15/17 (88%), Frame = -3

Query:    82 VPNXCSPGDPLVLERPP 32
             + N CSPGDPLVLERPP
Sbjct:    21 ISNSCSPGDPLVLERPP 37


 >gi|762925|emb|CAA59990.1|  (X85998) elastin like protein [Drosophila
            melanogaster]
            Length = 110

Frame  1 hits (HSPs):    __________                                       
                        __________________________________________________
Database sequence:     |        |        |        |        |         |    | 110
                       0       20       40       60       80       100

  Plus Strand HSPs:

 Score = 81 (28.5 bits), Expect = 0.069, P = 0.066
 Identities = 16/19 (84%), Positives = 16/19 (84%), Frame = +1

Query:    28 AVVXALELVDPPGCRXSAR 84
             AV  ALELVDPPGCR SAR
Sbjct:     5 AVAAALELVDPPGCRNSAR 23


 >gi|6539652|gb|AAF15968.1|AF106917_1  (AF106917) ribosomal protein L19 [Phodopus
            sungorus]
            Length = 65

Frame  2 hits (HSPs):   ____________________                              
                        __________________________________________________
Database sequence:     |              |               |              |    | 65
                       0             20              40             60

  Plus Strand HSPs:

 Score = 78 (27.5 bits), Expect = 0.15, P = 0.14
 Identities = 16/25 (64%), Positives = 19/25 (76%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHIFQXQG*KA 532
             KVKG VF NKR+LMEHI + +  KA
Sbjct:     2 KVKGNVFKNKRILMEHIHKLKADKA 26


 >gi|82823|pir||S10050  ribosomal protein L19.e - fission yeast
            (Schizosaccharomyces pombe) (fragment)
            Length = 29

Frame  3 hits (HSPs):      ___________________________________________    
                        __________________________________________________
Database sequence:     |                                |                 | 29
                       0                               20

  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.25, P = 0.22
 Identities = 16/25 (64%), Positives = 19/25 (76%), Frame = +3

Query:    90 LRLRKRLAASVLKCGKRKVWLDPNE 164
             LR  KRLAASVL  GKRKV  +P++
Sbjct:     3 LRTZKRLAASVLXXGKRKVXGBPBZ 27


 >gi|773414|gb|AAB05989.1|  (U23751) beta galactosidase [Cloning vector
            pBBR1MCS-2] >gi|833819|gb|AAB06689.1| (U25059) LacZ alpha peptide
            [Cloning vector pBBR1MCS-3] >gi|833823|gb|AAB06692.1| (U25060) LacZ
            alpha peptide [Cloning vector pBBR1MCS-4] >gi|833827|gb|AAB06695.1|
            (U25061) LacZ alpha peptide [Cloning vector pBBR1MCS-5]
            Length = 121

Frame -3 hits (HSPs):                ________                             
                        __________________________________________________
Database sequence:     |                    |                   |         | 121
                       0                   50                 100

  Minus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 0.33, P = 0.28
 Identities = 14/17 (82%), Positives = 15/17 (88%), Frame = -3

Query:    82 VPNXCSPGDPLVLERPP 32
             + N CSPGDPLVLERPP
Sbjct:    34 ISNSCSPGDPLVLERPP 50


 >gi|554467|gb|AAA41503.1|  (M30265) ribosomal protein L19 [Rattus norvegicus]
            Length = 35

Frame  2 hits (HSPs):                        ________________________     
                        __________________________________________________
Database sequence:     |                           |                      | 35
                       0                          20

  Plus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 0.54, P = 0.42
 Identities = 14/17 (82%), Positives = 15/17 (88%), Frame = +2

Query:   458 KVKGXVFXNKRVLMEHI 508
             KVKG VF NKR+LMEHI
Sbjct:    16 KVKGNVFKNKRILMEHI 32


 >gi|7489187|pir||T02229  protein BYJ15 - common tobacco (fragment)
            >gi|2280518|dbj|BAA21615.1| (AB005878) BYJ15 [Nicotiana tabacum]
            Length = 172

Frame  3 hits (HSPs):    ______                                           
                        __________________________________________________
Database sequence:     |              |             |              |      | 172
                       0             50           100            150

  Plus Strand HSPs:

 Score = 87 (30.6 bits), Expect = 0.84, P = 0.57
 Identities = 17/19 (89%), Positives = 17/19 (89%), Frame = +3

Query:    33 GGRSRTSGSPGLQXFGTXS 89
             GGRSRTSGSPGLQ FGT S
Sbjct:     7 GGRSRTSGSPGLQEFGTSS 25


 >gi|560560|gb|AAB31225.1|  (S71745) influenza virus hemagglutinin 5' epitope
            tag=fusion protein {N-terminal, frame 3} [Saccharomyces
            cerevisiae=yeast, YCpIF15,16,17 cloning vector, Peptide Plasmid
            Synthetic Partial, 56 aa]
            Length = 56

Frame -2 hits (HSPs):                          _____________________      
                        __________________________________________________
Database sequence:     |                |                 |               | 56
                       0               20                40

  Minus Strand HSPs:

 Score = 69 (24.3 bits), Expect = 1.4, P = 0.76
 Identities = 15/24 (62%), Positives = 17/24 (70%), Frame = -2

Query:    98 KSQRPRAEXLQPGGSTSSRAXTTA 27
             +S +   E LQPGGSTSSRA  TA
Sbjct:    27 RSDKLDIEFLQPGGSTSSRAAATA 50


 >gi|560558|gb|AAB31224.1|  (S71742) influenza virus hemagglutinin 5' epitope
            tag=fusion protein {N-terminal} [Saccharomyces cerevisiae=yeast,
            YCpIF15,16,17 cloning vector, Peptide Plasmid Synthetic Partial, 50
            aa]
            Length = 50

Frame -2 hits (HSPs):                              _________________      
                        __________________________________________________
Database sequence:     |                   |                   |          | 50
                       0                  20                  40

  Minus Strand HSPs:

 Score = 67 (23.6 bits), Expect = 2.3, P = 0.90
 Identities = 14/17 (82%), Positives = 14/17 (82%), Frame = -2

Query:    77 EXLQPGGSTSSRAXTTA 27
             E LQPGGSTSSRA  TA
Sbjct:    28 EFLQPGGSTSSRAAATA 44


 >gi|7489188|pir||T02232  protein BYJ6 - common tobacco (fragment)
            >gi|2280520|dbj|BAA21616.1| (AB005879) BYJ6 [Nicotiana tabacum]
            Length = 177

Frame  3 hits (HSPs):    ______                                           
                        __________________________________________________
Database sequence:     |             |             |              |       | 177
                       0            50           100            150

  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 2.7, P = 0.93
 Identities = 16/17 (94%), Positives = 16/17 (94%), Frame = +3

Query:    33 GGRSRTSGSPGLQXFGT 83
             GGRSRTSGSPGLQ FGT
Sbjct:     8 GGRSRTSGSPGLQEFGT 24


 >gi|7384996|gb|AAF61634.1|  (AF153422) lacZ [Cloning vector pTG8]
            Length = 197

Frame -3 hits (HSPs):            _____                                    
                        __________________________________________________
Database sequence:     |            |            |           |            | 197
                       0           50          100         150

  Minus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 3.5, P = 0.97
 Identities = 14/17 (82%), Positives = 15/17 (88%), Frame = -3

Query:    82 VPNXCSPGDPLVLERPP 32
             + N CSPGDPLVLERPP
Sbjct:    37 ISNSCSPGDPLVLERPP 53


 >gi|3402817|emb|CAA07704.1|  (AJ007829) lacZ' [Cloning vector pGreen]
            Length = 120

Frame  1 hits (HSPs):            _________                                
                        __________________________________________________
Database sequence:     |                    |                    |        | 120
                       0                   50                  100

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 7.6, P = 1.0
 Identities = 15/21 (71%), Positives = 15/21 (71%), Frame = +1

Query:    28 AVVXALELVDPPGCRXSARGL 90
             AV  ALELVDPPGCR S   L
Sbjct:    23 AVAAALELVDPPGCRNSISSL 43


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.90

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.322   0.139   0.430  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.346   0.152   0.562  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.336   0.148   0.490  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.332   0.147   0.545  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.342   0.156   0.506  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.336   0.151   0.505  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      331       262       10.  78 3  12 22  0.092   36
                                                    32  0.11    39
   +2      0      331       264       10.  78 3  12 22  0.093   36
                                                    32  0.12    39
   +1      0      332       257       10.  78 3  12 22  0.12    35
                                                    32  0.11    39
   -1      0      332       259       10.  78 3  12 22  0.091   36
                                                    32  0.11    39
   -2      0      331       256       10.  77 3  12 22  0.12    35
                                                    32  0.11    39
   -3      0      331       259       10.  78 3  12 22  0.091   36
                                                    32  0.11    39


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  43
  No. of states in DFA:  592 (58 KB)
  Total size of DFA:  238 KB (256 KB)
  Time to generate neighborhood:  0.02u 0.01s 0.03t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  324.68u 1.25s 325.93t  Elapsed: 00:01:50
  Total cpu time:  324.77u 1.31s 326.08t  Elapsed: 00:01:51
  Start:  Mon Oct 16 19:27:38 2000   End:  Mon Oct 16 19:29:29 2000


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000