BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= PGN_1376 putative transcriptional regulator
(211 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34540947|ref|NP_905426.1| transcriptional regulator, tet... 410 e-113
gi|154494938|ref|ZP_02033943.1| hypothetical protein PARMER... 229 1e-58
gi|150008133|ref|YP_001302876.1| transcriptional regulator ... 226 7e-58
gi|160890008|ref|ZP_02071011.1| hypothetical protein BACUNI... 207 4e-52
gi|167761776|ref|ZP_02433903.1| hypothetical protein BACSTE... 206 1e-51
gi|53715403|ref|YP_101395.1| transcriptional regulator [Bac... 204 3e-51
gi|153809022|ref|ZP_01961690.1| hypothetical protein BACCAC... 201 4e-50
gi|160885617|ref|ZP_02066620.1| hypothetical protein BACOVA... 200 4e-50
gi|29349178|ref|NP_812681.1| transcriptional regulator [Bac... 197 6e-49
gi|150002982|ref|YP_001297726.1| transcriptional regulator ... 191 3e-47
gi|124010437|ref|ZP_01695078.1| transcriptional regulator, ... 82 3e-14
gi|168714274|ref|ZP_02746551.1| TetR-family transcriptional... 68 5e-10
gi|110637352|ref|YP_677559.1| transcriptional regulator [Cy... 67 6e-10
gi|145955421|ref|ZP_01804422.1| hypothetical protein CdifQ_... 66 2e-09
gi|126698159|ref|YP_001087056.1| TetR-family transcriptiona... 65 3e-09
gi|187779432|ref|ZP_02995905.1| hypothetical protein CLOSPO... 62 2e-08
gi|78044445|ref|YP_360433.1| transcriptional regulator, Tet... 62 2e-08
gi|187479666|ref|YP_787691.1| TetR-family trasncriptional r... 61 5e-08
gi|160902502|ref|YP_001568083.1| transcriptional regulator,... 60 1e-07
gi|167729995|emb|CAO80907.1| putative Transcriptional regul... 59 2e-07
gi|118470212|ref|YP_889289.1| transcriptional regulator, Te... 59 3e-07
gi|83954948|ref|ZP_00963626.1| putative TetR-family transcr... 58 3e-07
gi|147679018|ref|YP_001213233.1| transcriptional regulator ... 58 4e-07
gi|84497825|ref|ZP_00996622.1| putative TetR-family transcr... 58 4e-07
gi|159897543|ref|YP_001543790.1| transcriptional regulator,... 57 6e-07
gi|163760735|ref|ZP_02167815.1| transcriptional regulator, ... 57 6e-07
gi|13476418|ref|NP_107988.1| transcriptional regulator [Mes... 57 8e-07
gi|83943566|ref|ZP_00956025.1| putative TetR-family protein... 57 8e-07
gi|89519315|gb|ABD75792.1| TetR/AcrR family transcriptional... 57 8e-07
gi|78043066|ref|YP_359370.1| transcriptional regulator, Tet... 57 9e-07
gi|119876816|ref|ZP_01643847.1| transcriptional regulator, ... 57 1e-06
gi|78357580|ref|YP_389029.1| putative transcriptional regul... 56 1e-06
gi|158339353|ref|YP_001520530.1| transcriptional regulator,... 56 2e-06
gi|46198917|ref|YP_004584.1| transcriptional regulator, tet... 55 2e-06
gi|118473595|ref|YP_890234.1| transcriptional regulator, Te... 55 2e-06
gi|86143487|ref|ZP_01061872.1| transcriptional regulator, T... 55 3e-06
gi|159036388|ref|YP_001535641.1| transcriptional regulator,... 55 3e-06
gi|163938991|ref|YP_001643875.1| transcriptional regulator,... 55 4e-06
gi|168166305|ref|ZP_02601534.1| transcriptional regulator, ... 55 4e-06
gi|89900852|ref|YP_523323.1| transcriptional regulator, Tet... 55 4e-06
gi|145593345|ref|YP_001157642.1| regulatory protein, TetR [... 55 4e-06
gi|134100119|ref|YP_001105780.1| TetR-family transcriptiona... 54 5e-06
gi|55980942|ref|YP_144239.1| transcriptional regulator, Tet... 54 7e-06
gi|77979365|ref|ZP_00834784.1| COG1309: Transcriptional reg... 54 7e-06
gi|24379070|ref|NP_721025.1| putative transcriptional regul... 54 8e-06
gi|92116523|ref|YP_576252.1| transcriptional regulator, Tet... 54 9e-06
gi|169188655|ref|ZP_02848717.1| transcriptional regulator, ... 54 9e-06
>gi|34540947|ref|NP_905426.1| transcriptional regulator, tetR family [Porphyromonas gingivalis
W83]
gi|34397262|gb|AAQ66325.1| transcriptional regulator, tetR family [Porphyromonas gingivalis
W83]
Length = 202
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/202 (99%), Positives = 200/202 (99%)
Query: 10 MIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSSLE 69
MIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSSLE
Sbjct: 1 MIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSSLE 60
Query: 70 TAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLKEEHLI 129
TAALVSM PTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLKEEHLI
Sbjct: 61 TAALVSMPPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLKEEHLI 120
Query: 130 CSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFERISENVEHLI 189
CSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFERISENVEHLI
Sbjct: 121 CSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFERISENVEHLI 180
Query: 190 FHGICLSPTVNSGEEEIGSESV 211
FHGICLSP VNSGEEEIGSESV
Sbjct: 181 FHGICLSPAVNSGEEEIGSESV 202
>gi|154494938|ref|ZP_02033943.1| hypothetical protein PARMER_03982 [Parabacteroides merdae ATCC
43184]
gi|154085488|gb|EDN84533.1| hypothetical protein PARMER_03982 [Parabacteroides merdae ATCC
43184]
Length = 197
Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/195 (57%), Positives = 146/195 (74%), Gaps = 5/195 (2%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KTRE+++DVARQLFA++GV+ TTMNDIA A+ KGRRTLYTYFKSK +IY AVV E
Sbjct: 3 MTVSKTREMLVDVARQLFARMGVDNTTMNDIAQASKKGRRTLYTYFKSKNEIYLAVVESE 62
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
LD+LY L+ A + +KLM F+Y L+AIK +V RNGTL+A+FFRDIW+VE RK
Sbjct: 63 LDQLYKMLQDVAAKDLPADEKLMTFLYARLDAIKALVFRNGTLKANFFRDIWRVEKIRKN 122
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFER 180
FD++E LI IL+ GV+ F++PDT ITA +L H++KGLEVPYI G + G +R
Sbjct: 123 FDIRETELIQGILEAGVKEGIFAMPDTEITAVVLHHALKGLEVPYIRGIM---GDNISQR 179
Query: 181 IS--ENVEHLIFHGI 193
I +NV +LIF+GI
Sbjct: 180 IKRRDNVMNLIFNGI 194
>gi|150008133|ref|YP_001302876.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
gi|149936557|gb|ABR43254.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
Length = 197
Score = 226 bits (576), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 112/195 (57%), Positives = 146/195 (74%), Gaps = 5/195 (2%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KTR++++DVARQLFA++GV+ TTMNDIA A+ KGRRTLYTYFKSK +IY AVV E
Sbjct: 3 MTVSKTRDMLVDVARQLFARMGVDNTTMNDIAQASRKGRRTLYTYFKSKNEIYLAVVESE 62
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
LD+L+ L A + +KL+ FIY+ L+A+K +V RNGTLRA FFRDIW+VE RK
Sbjct: 63 LDQLHKMLVDVASKDLPADEKLLTFIYSRLDAVKALVFRNGTLRATFFRDIWRVEKVRKS 122
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFER 180
FDL+E +I ILD+GV+ FS+PDT ITA +L H++KGLEVPYI G + G +R
Sbjct: 123 FDLREVEIIKGILDDGVKEGVFSMPDTDITALVLHHALKGLEVPYIRGIM---GDNISQR 179
Query: 181 IS--ENVEHLIFHGI 193
I +NV +LIF+GI
Sbjct: 180 IKRRDNVMNLIFNGI 194
>gi|160890008|ref|ZP_02071011.1| hypothetical protein BACUNI_02442 [Bacteroides uniformis ATCC 8492]
gi|156860396|gb|EDO53827.1| hypothetical protein BACUNI_02442 [Bacteroides uniformis ATCC 8492]
Length = 194
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 125/170 (73%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KT+ ++DVARQLFAK+GVE TTMNDIA A+ KGRRTLYTYFKSK+DIY AVV E
Sbjct: 1 MTVSKTKAKLVDVARQLFAKMGVENTTMNDIALASKKGRRTLYTYFKSKEDIYLAVVESE 60
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
LD L ++ + P +KLM IYTHL+A+KE+V RNGTLRA+FFRDIW+VE RK
Sbjct: 61 LDILSDMMKHVVEKDIQPDEKLMEMIYTHLDAVKEVVFRNGTLRANFFRDIWRVEKVRKR 120
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHL 170
FD E L +L EG+ F I D +TA+I+ +S+KG+E PYI GH+
Sbjct: 121 FDATETQLFKEVLREGMEKGVFQIDDLDMTAEIVHYSVKGIETPYIRGHI 170
>gi|167761776|ref|ZP_02433903.1| hypothetical protein BACSTE_00114 [Bacteroides stercoris ATCC
43183]
gi|167700412|gb|EDS16991.1| hypothetical protein BACSTE_00114 [Bacteroides stercoris ATCC
43183]
Length = 194
Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/170 (58%), Positives = 128/170 (75%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KT+ ++DVARQLFAK+GVE TTMNDIA A+ KGRRTLYTYFKSK+DIY AVV E
Sbjct: 1 MAVSKTKAKLVDVARQLFAKMGVENTTMNDIALASKKGRRTLYTYFKSKEDIYMAVVESE 60
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
LD L ++ A ++SP +K++ IYT L+A+KE+V RNGTLRA+FFRDIW+VE RK
Sbjct: 61 LDMLSDMMKRVAEKNISPDEKMIEMIYTRLDAVKEVVFRNGTLRANFFRDIWRVEKVRKR 120
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHL 170
FD KE L +L EGV F I D +TA+++ + +KG+EVPYI GH+
Sbjct: 121 FDAKEILLFKDVLREGVEKGVFRIDDIDMTAELVHYCVKGIEVPYIRGHI 170
>gi|53715403|ref|YP_101395.1| transcriptional regulator [Bacteroides fragilis YCH46]
gi|60683370|ref|YP_213514.1| putative TetR-family transcriptional regulator [Bacteroides
fragilis NCTC 9343]
gi|52218268|dbj|BAD50861.1| transcriptional regulator [Bacteroides fragilis YCH46]
gi|60494804|emb|CAH09610.1| putative TetR-family transcriptional regulator [Bacteroides
fragilis NCTC 9343]
Length = 198
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/193 (52%), Positives = 133/193 (68%), Gaps = 2/193 (1%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KT+ ++DVARQLFAK+GVE TTMNDIA A+ KGRRTLYTYFKSK +IY AVV E
Sbjct: 1 MTVSKTKAKLVDVARQLFAKMGVENTTMNDIALASKKGRRTLYTYFKSKDEIYLAVVESE 60
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
LD L ++ A +SP KK++ IYT L+A+KE+V RNGTLRA+FFRDIW+VE RK
Sbjct: 61 LDILSDMMKRVADKDISPDKKIIEMIYTRLDAVKEVVYRNGTLRANFFRDIWRVEKVRKR 120
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFER 180
FD KE L S+L EG F + D +TA ++ + +KG+EVPYI GH+ + E
Sbjct: 121 FDAKEMQLFKSVLKEGQDKGVFHVDDVEMTAALVHYCVKGIEVPYIRGHI--GANLDMET 178
Query: 181 ISENVEHLIFHGI 193
V +++F +
Sbjct: 179 RKRYVANIVFGAL 191
>gi|153809022|ref|ZP_01961690.1| hypothetical protein BACCAC_03326 [Bacteroides caccae ATCC 43185]
gi|149128355|gb|EDM19574.1| hypothetical protein BACCAC_03326 [Bacteroides caccae ATCC 43185]
Length = 196
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 126/170 (74%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KT+ ++DVARQLFAK+GVE TTMNDIA A+ KGRRTLYTYFKSK +IY AVV E
Sbjct: 1 MTVSKTKAKLVDVARQLFAKMGVENTTMNDIALASKKGRRTLYTYFKSKDEIYLAVVESE 60
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
LD L ++ A ++SP +KL+ IYT L+A+KE+V RNGTLRA FFRDIW+VE RK+
Sbjct: 61 LDILSDMMKRVAEKNISPDEKLLEMIYTRLDAVKEVVYRNGTLRAYFFRDIWRVEKVRKK 120
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHL 170
FD KE L ++L EG F I D +TA ++ + +KG+EVPYI GH+
Sbjct: 121 FDAKEVQLFKAVLLEGQAKGVFHIDDVEMTADLIHYCVKGIEVPYIRGHI 170
>gi|160885617|ref|ZP_02066620.1| hypothetical protein BACOVA_03620 [Bacteroides ovatus ATCC 8483]
gi|156109239|gb|EDO10984.1| hypothetical protein BACOVA_03620 [Bacteroides ovatus ATCC 8483]
Length = 196
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/170 (57%), Positives = 126/170 (74%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KT+ ++DVARQLFAK+GVE TTMNDIA A+ KGRRTLYTYFKSK +IY AVV E
Sbjct: 1 MTVSKTKAKLVDVARQLFAKMGVENTTMNDIALASKKGRRTLYTYFKSKDEIYLAVVESE 60
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
LD L ++ A ++SP +KL+ IYT L+A+KE+V RNGTLRA FFRDIW+VE RK+
Sbjct: 61 LDILSDMMKRVAEKNISPDEKLLEMIYTRLDAVKEVVYRNGTLRAYFFRDIWRVEKVRKK 120
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHL 170
FD KE L ++L EG F I D +TA ++ + +KG+EVPYI GH+
Sbjct: 121 FDAKEVQLFKAVLLEGQAKGVFHIDDVEMTADLIHYCVKGIEVPYIRGHI 170
>gi|29349178|ref|NP_812681.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
gi|29341086|gb|AAO78875.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
Length = 196
Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 124/170 (72%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KT+ ++DVARQLFAK+GVE TTMNDIA + KGRRTLYTYFKSK +IY AVV E
Sbjct: 1 MTVSKTKAKLVDVARQLFAKMGVENTTMNDIALTSKKGRRTLYTYFKSKDEIYLAVVESE 60
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
LD L ++ A ++SP KL+ IYT L+A+KE+V RNGTLRA FFRDIW+VE RK+
Sbjct: 61 LDILSDMMKRVADKNISPDDKLLELIYTRLDAVKEVVYRNGTLRAYFFRDIWRVEKVRKK 120
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHL 170
FD KE + ++L EG F I D +TA ++ + +KG+EVPYI GH+
Sbjct: 121 FDAKEIQIFKAVLLEGQAKGVFHIDDVEMTADLIHYCVKGIEVPYIRGHI 170
>gi|150002982|ref|YP_001297726.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
gi|149931406|gb|ABR38104.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
Length = 199
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 119/170 (70%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+V+KTR ++DVARQLFAK GV+ TTMNDIA A+ KGRRTLYTYFKSK+DIY AVV E
Sbjct: 1 MAVSKTRAKLVDVARQLFAKNGVDDTTMNDIAVASKKGRRTLYTYFKSKEDIYMAVVESE 60
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKE 120
L+ L ++E A ++P K++ I THL++IK +V RNGTLRA FFRDIW+VE RK
Sbjct: 61 LEMLSGAMEKVAEQDIAPDTKILRLIETHLDSIKMVVFRNGTLRAGFFRDIWRVEAVRKN 120
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHL 170
FD E L +L EG F I + +I A I+ + +KG+E PYI G +
Sbjct: 121 FDRTETKLFRQVLTEGKEKGIFDIDNVNIVADIVHYCVKGIEAPYIRGQI 170
>gi|124010437|ref|ZP_01695078.1| transcriptional regulator, TetR family, putative [Microscilla
marina ATCC 23134]
gi|123983474|gb|EAY23954.1| transcriptional regulator, TetR family, putative [Microscilla
marina ATCC 23134]
Length = 196
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 7 RELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYS 66
+E ++ A++LF + G++KTTM +IA AA KG+ TLY YFKSK +I+ AVV +E ++L+
Sbjct: 8 QEFILQKAKKLFQRYGLKKTTMEEIAKAAGKGKSTLYYYFKSKDEIFEAVVKQETEQLHK 67
Query: 67 SLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLKEE 126
L+ + +L + THL+ +KE V + ++ + + RK+F+ E
Sbjct: 68 ELKELTSQANDVQTRLKLYCITHLQKLKEKVNLYQIVFSELSDQMGMMYELRKKFNHFEL 127
Query: 127 HLICSILDEGVRLN--AFSIPDTHITAKILLHSIKGLE 162
+ IL EGV N S D A ++ ++KG+E
Sbjct: 128 DFLTQILTEGVENNEIELSREDIEWFAVVMSAAMKGIE 165
>gi|168714274|ref|ZP_02746551.1| TetR-family transcriptional regulator [Clostridium difficile
QCD-63q42]
Length = 201
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 22/206 (10%)
Query: 4 AKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDE 63
A+ RE ++ VA L A+ G +KT+M +IA AN G+ +LY +FK+K +I V KE+++
Sbjct: 13 AERREKIVAVALSLMAENGFQKTSMREIAVLANMGKSSLYDFFKTKDEIVVYAVEKEIEK 72
Query: 64 LYSSLETAALVSMSPTKKLMHFIYTHL---EAIKEIVVRNGTLRADFFRDIW--KVETAR 118
+ SP + L + HL E + +++ T +D+ + + +++ AR
Sbjct: 73 TIQQVHRIIDGEPSPQQCLRKIMLNHLRFPEQYRTVLMWLNT-ESDYLEEEYRKRLKDAR 131
Query: 119 KEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAF 178
+ + +I S++D GV F DT + ++L++S+ L + Y S L +
Sbjct: 132 YAY----QDIIKSVIDNGVTTGIFRKTDTALVTRLLINSM--LSISYTSRPLDSS----- 180
Query: 179 ERISENVEHLIFHGICLSPTVNSGEE 204
E++ + ++ HGI +N G E
Sbjct: 181 EKMLDETMNIFLHGI-----MNDGGE 201
>gi|110637352|ref|YP_677559.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
gi|110280033|gb|ABG58219.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
Length = 210
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 18/165 (10%)
Query: 8 ELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE----LDE 63
EL+I+ A++ FA G+ KTTMN+IA G+ +LY YF K+ ++ AV+ KE DE
Sbjct: 14 ELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDE 73
Query: 64 ----LYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKV-ETAR 118
L S ++ AL+ + +HF HL + LR+DFF + V A
Sbjct: 74 MDKILNSGIDATALLKKYVKLRSLHF--RHLLNL-------SKLRSDFFHNTKPVFAKAF 124
Query: 119 KEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEV 163
+ F KE ++ I+ G+ F + H A+ L+H + G+ +
Sbjct: 125 ESFKQKEVEIVAGIIQYGITTKEFKRGNKHENAEFLVHLLLGVRM 169
>gi|145955421|ref|ZP_01804422.1| hypothetical protein CdifQ_04000611 [Clostridium difficile
QCD-32g58]
gi|168697203|ref|ZP_02729480.1| TetR-family transcriptional regulator [Clostridium difficile
QCD-37x79]
gi|168724366|ref|ZP_02756643.1| TetR-family transcriptional regulator [Clostridium difficile
QCD-76w55]
gi|168731133|ref|ZP_02763410.1| TetR-family transcriptional regulator [Clostridium difficile
QCD-97b34]
Length = 201
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 22/206 (10%)
Query: 4 AKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDE 63
A+ RE ++ VA L A+ G +KT+M +IA AN G+ +LY +FK+K +I V KE+++
Sbjct: 13 AERREKIVAVALSLMAENGFQKTSMREIAVLANMGKSSLYDFFKTKDEIVVYAVEKEIEK 72
Query: 64 LYSSLETAALVSMSPTKKLMHFIYTHL---EAIKEIVVRNGTLRADFFRDIW--KVETAR 118
+ SP + L + HL E + +++ T +D+ + + +++ AR
Sbjct: 73 TIQQVHRIIDGEPSPQQCLRKIMLNHLRFPEQYRTVLMWLNT-ESDYLEEEYRKRLKDAR 131
Query: 119 KEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAF 178
+ + +I S++D GV F DT + ++L++S+ L + Y S + +
Sbjct: 132 YAY----QDIIKSVIDNGVTTGIFRKTDTALVTRLLINSM--LSISYTS-----RPSDSS 180
Query: 179 ERISENVEHLIFHGICLSPTVNSGEE 204
E++ + ++ HGI +N G E
Sbjct: 181 EKMLDETMNIFLHGI-----MNDGGE 201
>gi|126698159|ref|YP_001087056.1| TetR-family transcriptional regulator [Clostridium difficile 630]
gi|115249596|emb|CAJ67413.1| TetR-family transcriptional regulator [Clostridium difficile 630]
Length = 210
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 22/206 (10%)
Query: 4 AKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDE 63
A+ RE ++ VA L A+ G +KT+M +IA AN G+ +LY +FK+K +I V KE+++
Sbjct: 22 AERREKIVAVALSLMAENGFQKTSMREIAVLANMGKSSLYDFFKTKDEIVVYAVEKEIEK 81
Query: 64 LYSSLETAALVSMSPTKKLMHFIYTHL---EAIKEIVVRNGTLRADFFRDIW--KVETAR 118
+ SP + L + HL E + +++ T +D+ + + +++ AR
Sbjct: 82 TIQQVHRIIDGEPSPQQCLRKIMLNHLRFPEQYRTVLMWLNT-ESDYLEEEYRKRLKDAR 140
Query: 119 KEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAF 178
+ + +I S++D GV F DT + ++L++S+ L + Y S L +
Sbjct: 141 YAY----QDIIKSVIDNGVTTGIFRKTDTALVTRLLINSM--LSISYTSRPLDSS----- 189
Query: 179 ERISENVEHLIFHGICLSPTVNSGEE 204
E++ + ++ +GI +N G E
Sbjct: 190 EKMLDETMNIFLNGI-----MNDGGE 210
>gi|187779432|ref|ZP_02995905.1| hypothetical protein CLOSPO_03028 [Clostridium sporogenes ATCC
15579]
gi|187773057|gb|EDU36859.1| hypothetical protein CLOSPO_03028 [Clostridium sporogenes ATCC
15579]
Length = 203
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 102/205 (49%), Gaps = 20/205 (9%)
Query: 4 AKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDE 63
A+ RE +I VA +L K G +KT+M +IA AN G+ +LY +FK+K +I V K+++E
Sbjct: 13 AERREEIIGVALRLIEKNGFQKTSMREIAVLANMGKSSLYDFFKTKDEIVVYAVEKKIEE 72
Query: 64 LYSSLETAALVSMSPTKKLMHFIYTHLEAIKE--IVVRNGTLRADFFRDIW--KVETARK 119
+ SP + L + HL K+ V+ +D+ + + +++ AR
Sbjct: 73 TIQKVHRIIADESSPEQCLRKIMLNHLGVPKQYRTVLMWLNTESDYLEEEYRKRLKAARY 132
Query: 120 EFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFE 179
+ + +I S+++ GV F + + A++L++S+ + + Y S + + E
Sbjct: 133 AY----QDIIKSVIENGVTAGIFRKTNADLMARLLINSV--IAIIYTS-----RPSASPE 181
Query: 180 RISENVEHLIFHGICLSPTVNSGEE 204
++ + ++ HGI +N G E
Sbjct: 182 KMLDETMNIFLHGI-----MNDGGE 201
>gi|78044445|ref|YP_360433.1| transcriptional regulator, TetR family [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996560|gb|ABB15459.1| transcriptional regulator, TetR family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 198
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 8 ELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSS 67
E ++D A ++ ++G K ++ IA AN T+Y YFK+K+D+ ++ K E S+
Sbjct: 10 EAILDAAAKIIGEVGYHKAQISKIAREANVAEGTIYLYFKNKQDLLLSLFQKRYGEFISN 69
Query: 68 LETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLKEE- 126
L+ + +P KL I HLE ++ RN F + ++E + + DL+++
Sbjct: 70 LKVEIAAAKTPLDKLKKLITMHLENSEK--DRN-------FAQVTQIELRQADRDLRQKL 120
Query: 127 --------HLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAF 178
++I S+++EG F I+ K++ I G +S L + +
Sbjct: 121 SELLKDYFYIIESVIEEGKEQGIFR---KDISTKVIRRMIFGTLDETVSSWLLSSRRYSL 177
Query: 179 ERISENVEHLIFHGI 193
++S++V L +GI
Sbjct: 178 AKLSDDVFQLFCYGI 192
>gi|187479666|ref|YP_787691.1| TetR-family trasncriptional regulator [Bordetella avium 197N]
gi|115424253|emb|CAJ50806.1| TetR-family trasncriptional regulator [Bordetella avium 197N]
Length = 210
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 2 SVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKEL 61
++A RE ++D A LFA+ G E ++++D+A A + +Y Y+ +K+DIY A++ L
Sbjct: 16 TLAAPRERILDAAAALFARSGYENSSISDLACAIGVSKAAIYHYYPTKQDIYDAIILDVL 75
Query: 62 DELYSSLETAALVSMSPTKKLMHFIYTHLEA--------IKEIVVRNGTL---RAD--FF 108
L S++ A +L F+ H + + +V +G RAD
Sbjct: 76 SGLLSAVTQACDPERGARARLRAFMVAHADYFETHHDQFVTMLVGYSGMASPERADAAAL 135
Query: 109 RDIWKVETARKEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISG 168
RD + E L+ +IL +G+ F D T + +L + + Y G
Sbjct: 136 RD-------------RYEGLLRAILAQGISEAVFRERDIAATGRAVLSLLNWMVRWYKPG 182
Query: 169 HLRHAGTIAFERISENVEHLIFHGICLSPT 198
+ AG +A E+ +LI G+C S T
Sbjct: 183 QGQKAGVVA-----EDYFNLIAGGLCRSDT 207
>gi|160902502|ref|YP_001568083.1| transcriptional regulator, TetR family [Petrotoga mobilis SJ95]
gi|160360146|gb|ABX31760.1| transcriptional regulator, TetR family [Petrotoga mobilis SJ95]
Length = 213
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 39/152 (25%)
Query: 9 LMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDEL---- 64
L+++VA ++F + G EK TM +IA AN + TLY YF SKKD+YF V + L L
Sbjct: 17 LIMNVAEKIFVEKGYEKATMTEIAKKANLAKGTLYLYFSSKKDLYFTSVERALSALLRSI 76
Query: 65 ---YSSLETA--ALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARK 119
+SS + +VSM T ++ LE + D+++ I ET
Sbjct: 77 IEKFSSCKNGFEKVVSMGET-----YVSFSLEYV------------DYYKLILNYETLEV 119
Query: 120 EFDLKEEH-------------LICSILDEGVR 138
FD K+ H L+ S ++EG++
Sbjct: 120 RFDDKDPHVKKAYEKSEEIFKLLVSSVEEGIK 151
>gi|167729995|emb|CAO80907.1| putative Transcriptional regulator, TetR family [Candidatus
Cloacamonas acidaminovorans]
Length = 199
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 1 MSVAKTRE-LMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHK 59
MS A+ ++ L++D+A QLF + G KT++++IA AA + T+Y YF SK+D++ A V
Sbjct: 1 MSAAQNKKKLILDIATQLFTRFGFAKTSLDEIAAAAQIAKGTVYYYFPSKEDLFIASVEA 60
Query: 60 ELDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKE 95
+ E + L +M +KL F+ ++ I E
Sbjct: 61 KTREYFKMLRQHINATMGFEEKLTEFLSFPIKLIYE 96
>gi|118470212|ref|YP_889289.1| transcriptional regulator, TetR family protein [Mycobacterium
smegmatis str. MC2 155]
gi|118171499|gb|ABK72395.1| transcriptional regulator, TetR family protein [Mycobacterium
smegmatis str. MC2 155]
Length = 195
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 8 ELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSS 67
+L++D A LFA+ M++IA AA R TLY YF+++ +Y A VH+E +Y
Sbjct: 15 DLILDAADALFARKDAATVGMHEIAAAAGCSRATLYRYFENRDALYTAYVHREARRVYQE 74
Query: 68 LETAALVSMSPTKKLMHFIYTHLEAIK 94
+ + P ++LM + T L A++
Sbjct: 75 VSDQVVGIGDPAERLMEGVITALRAVR 101
>gi|83954948|ref|ZP_00963626.1| putative TetR-family transcriptional regulator [Sulfitobacter sp.
NAS-14.1]
gi|83840674|gb|EAP79846.1| putative TetR-family transcriptional regulator [Sulfitobacter sp.
NAS-14.1]
Length = 218
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 24/172 (13%)
Query: 6 TRELMIDVARQLFAKIGVEKTTMNDIAD--AANKGRRTLYTYFKSKKDIYFAVVHKELDE 63
+R +I+ A Q F G++K TM+DIAD A KGR +Y +F+SK IYFAV + +
Sbjct: 23 SRREIIEAAAQCFMLKGLDKATMDDIADVLGATKGR--VYHHFRSKNAIYFAVYRQAMQY 80
Query: 64 LYSSLETAALVSMSPTKKLMHFIYTHLEAIK-------------EIVVRNGTLRADFFRD 110
+ ++ ++ S KL + H + E+ +R T A+ R
Sbjct: 81 CFDAVTPLISLNTSSISKLELMAHAHARVMMDTLPYQRSIRLGVEVYLRGSTTEAE--RG 138
Query: 111 IWK-VETARKEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGL 161
+ + + T R ++ E+L +L GV +P+ I ++ L+ ++ GL
Sbjct: 139 VLRELITLRNDY----ENLYREVLRAGVAQGELDVPNIEIASRALMGALNGL 186
>gi|147679018|ref|YP_001213233.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
gi|146275115|dbj|BAF60864.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
Length = 200
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 10/191 (5%)
Query: 7 RELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYS 66
++L+ D A F G T+++ I A+ + +Y +FKSK++I+ +V K LDE
Sbjct: 9 KDLIADAAMSCFLASGYSGTSVDSIVKASGVSKGGIYWHFKSKEEIFLYLVEKWLDENRK 68
Query: 67 SLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADF---FRDIWKVETARKEFDL 123
+LET + T KL F+ +E + V+ +L +F RD + R+ +
Sbjct: 69 ALETCLKLDEPATAKLARFVDFTVERARSPVL---SLINEFVMAVRDDSVINRLRELMER 125
Query: 124 K-EEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFERIS 182
+ EE +I +++ G+ F D + ++I + GL + + H +H R++
Sbjct: 126 RSEESIIAAVISRGIEDGEFKSLDAGVASEIFVTMFHGLVMRW---HFKHKDISLLRRVA 182
Query: 183 ENVEHLIFHGI 193
+ + G+
Sbjct: 183 KTAMSICLEGL 193
>gi|84497825|ref|ZP_00996622.1| putative TetR-family transcriptional regulator [Janibacter sp.
HTCC2649]
gi|84381325|gb|EAP97208.1| putative TetR-family transcriptional regulator [Janibacter sp.
HTCC2649]
Length = 198
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M+ A+ RE ++ + RQ+FAK G E TT+ +IA AA + +Y +F K+ +Y VV +E
Sbjct: 1 MTGAQRREQLVGIGRQIFAKRGYEATTVEEIASAAGVSKPVVYEHFGGKEGLYAVVVDRE 60
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHL 90
+ L + AL S ++ L+ T L
Sbjct: 61 IQSLLGGI-AQALSSGGGSRALLERAATAL 89
>gi|159897543|ref|YP_001543790.1| transcriptional regulator, TetR family [Herpetosiphon aurantiacus
ATCC 23779]
gi|159890582|gb|ABX03662.1| transcriptional regulator, TetR family [Herpetosiphon aurantiacus
ATCC 23779]
Length = 212
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 9 LMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSSL 68
L+++ A+ + + G +T+++DIA + T+Y +F SK+D+ A+V ++L +
Sbjct: 25 LILEAAQTILLERGYHETSIDDIAAQVGIAKGTVYLHFPSKEDLMIALVERQLQNFVQVI 84
Query: 69 ETAALVSMSPTKKL---MHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLKE 125
E A + S ++L + Y EA R F +++ R F K
Sbjct: 85 EAVAASTSSARERLEAILQRTYDPSEA----------RRMQIFLEVFGSADMRSRFAEKH 134
Query: 126 E----------HLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGT 175
E +L+ I+++G F D +I+ K+++ L P HL T
Sbjct: 135 ERTQPIIDHVRNLLREIIEQGKAQGEF---DPNISTKVMIVMYLNLLSPRNYHHLTTDQT 191
Query: 176 IAFERISENVEHLIFHGIC 194
+AFE + + + FHGI
Sbjct: 192 VAFEELLPQIIQIFFHGIS 210
>gi|163760735|ref|ZP_02167815.1| transcriptional regulator, TetR family protein [Hoeflea
phototrophica DFL-43]
gi|162282057|gb|EDQ32348.1| transcriptional regulator, TetR family protein [Hoeflea
phototrophica DFL-43]
Length = 200
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 8/168 (4%)
Query: 2 SVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKEL 61
S A+T E + +VA +LFA+ G +M IA A +Y +F +K+D+ ++ +
Sbjct: 8 SGAETAEKLRNVALELFAQSGYAAVSMRAIAAATGVQAGAIYNHFPTKQDLLNELLQVHM 67
Query: 62 DELYSSLETAALVSMSPTKKLMHF----IYTHLEAIKEIVVRNGTLRADFFRDIWKVETA 117
+ L +S A + P L F I HL+ +E+ + LR + ++E
Sbjct: 68 ETLLASCAEAEQPGLMPPDALEEFVRFHIRYHLDRSREVFISYMELRNLEGENFNEIERL 127
Query: 118 RKEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPY 165
R+++ E + +IL+ G +FSI D +T ++ + G+ Y
Sbjct: 128 RRQY----ERVPYAILERGAADGSFSIIDPQVTTMAIIAMLNGMTTWY 171
>gi|13476418|ref|NP_107988.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
gi|14027179|dbj|BAB54133.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
Length = 213
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 14/171 (8%)
Query: 5 KTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDEL 64
+T + + A L A+ G E +M +A LY YF +K+D+ F ++ + ++ L
Sbjct: 11 RTEAAVREAAVNLIARYGYEAMSMRQLAAEVGVQAAALYRYFPTKEDLLFTLMREHMEGL 70
Query: 65 YSSLETAALVSMSPTKKLMHFIYT----HLEAIKEIVVRNGTLRA---DFFRDIWKVETA 117
++ E + P ++L ++ H+E V N LR+ D I ++ TA
Sbjct: 71 RAAWEHVRPIDADPAEQLAAYVRNHIAFHIERRHSTHVSNMELRSLSPDRLTQILRMRTA 130
Query: 118 RKEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISG 168
E + SIL EG FSI DT +TA L+ + G+ V + G
Sbjct: 131 -------YEKELRSILREGAEAGDFSIEDTGLTAMALIQMMTGVIVWFRPG 174
>gi|83943566|ref|ZP_00956025.1| putative TetR-family protein transcriptional regulator
[Sulfitobacter sp. EE-36]
gi|83845798|gb|EAP83676.1| putative TetR-family protein transcriptional regulator
[Sulfitobacter sp. EE-36]
Length = 218
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 6 TRELMIDVARQLFAKIGVEKTTMNDIAD--AANKGRRTLYTYFKSKKDIYFAVVHKELDE 63
+R +I+ A Q F G++K TM+DIAD A KGR +Y +F+SK IYFAV + +
Sbjct: 23 SRREIIEAAAQCFMLKGLDKATMDDIADVLGATKGR--VYHHFRSKNAIYFAVYRQAMQY 80
Query: 64 LYSSLETAALVSMSPTKKLMHFIYTHLEAIK-------------EIVVRNGTLRAD--FF 108
+ ++ + S KL + H + E+ +R T A+
Sbjct: 81 CFDAVTPLISLDTSNISKLELMAHAHARVMMDTLPYQRSIRLGVEVYLRGSTTEAERAVL 140
Query: 109 RDIWKVETARKEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGL 161
R++ T R ++ E+L +L GV +P+ I ++ L+ ++ GL
Sbjct: 141 RELI---TLRNDY----ENLYREVLRAGVAQGELDVPNIEIASRALMGALNGL 186
>gi|89519315|gb|ABD75792.1| TetR/AcrR family transcriptional regulator [uncultured bacterium]
Length = 202
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 10/173 (5%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
MS + R+ ++ AR+ FA+ G +KTT++DI + +LY Y+K+K+ I+ V+ +E
Sbjct: 1 MSPLEKRQEIVKAARECFARFGYDKTTLDDIGRIVGLNKASLYYYYKNKEAIFVEVIVQE 60
Query: 61 LDELYSSLE--TAALVSMSPTK-KLMHFIYTHLEAIKEIV-VRNGTLRADFFRDIWKV-E 115
++ S L+ A + + + K++ ++ + ++ ++ V N ++ A FR++ +
Sbjct: 61 IE---SCLDHHCAKIKELPGCREKILSYLREKIRYMQNLINVHNLSIEA--FRNVQPMFA 115
Query: 116 TARKEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISG 168
++ KE I I DE + +T A+ LL I G+++ + G
Sbjct: 116 NLFQQITEKEVIFISGIFDECIACGDMKPCNTKRVARTLLTVIDGIKIKAVQG 168
>gi|78043066|ref|YP_359370.1| transcriptional regulator, TetR family [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995181|gb|ABB14080.1| transcriptional regulator, TetR family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 188
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 10 MIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSSLE 69
++ A ++ A+ G EK TM++IA + + TLY YFKSK++++ + L+EL +
Sbjct: 8 ILKAAAKVMAQKGFEKATMDEIAKISKVAKGTLYYYFKSKEELFLKLTLSILEELEERTK 67
Query: 70 TAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLKEEHLI 129
+ +S +KL I +E E + DFF E+ R + + LI
Sbjct: 68 KVLELKVSAAEKLRALIKVQVEFFLEFHEEVVLVLGDFFGSTLPRESFRVKIN-DYYRLI 126
Query: 130 CSILDEGVRLNAFSIPDTHITAKILLHSIKGL-EVPYISGHLRHAGTIAFERISENVEHL 188
++ EG++ N F + +I + + G+ I G LR G + E++ N+ +
Sbjct: 127 NQLIAEGIKANEFR----EVNLEIFVPAFFGMTSFATIRGILREKGFLK-EQLINNLTEI 181
Query: 189 IFHGI 193
+ +G+
Sbjct: 182 VLNGL 186
>gi|119876816|ref|ZP_01643847.1| transcriptional regulator, TetR family [Stenotrophomonas
maltophilia R551-3]
gi|119820617|gb|EAX23224.1| transcriptional regulator, TetR family [Stenotrophomonas
maltophilia R551-3]
Length = 206
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 4 AKTR-ELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELD 62
A+TR E ++D A+ LF GVE TT++DI AA+ + T YTYF S+ +I A+ +
Sbjct: 14 AETRQEELMDAAQALFLSQGVEATTISDIVAAADVAKGTFYTYFASRTEILQALAQRYTR 73
Query: 63 ELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFD 122
+ ++ A V P + + + A E+ VR L F + + E
Sbjct: 74 QFMEEVDLA--VQQQPANDGVARLRAWIRANIELYVRTHALHDVVFANHHHHQRGNAERS 131
Query: 123 LKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKG 160
++ L+ IL+ G + +P +TA ++ + G
Sbjct: 132 AIQQQLL-GILEAGNAAGLWQLPAPKVTASLIYAGVHG 168
>gi|78357580|ref|YP_389029.1| putative transcriptional regulator, TetR family [Desulfovibrio
desulfuricans G20]
gi|78219985|gb|ABB39334.1| putative transcriptional regulator, TetR family [Desulfovibrio
desulfuricans G20]
Length = 87
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 5 KTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDEL 64
KTR+L++D A +F + G TT+NDIA+ AN R +Y +FK+K D++ AV+ K D +
Sbjct: 11 KTRQLLLDCALTVFLRKGYSATTLNDIAEEANLTRGAVYWHFKNKVDVFSAVMDKAFDPI 70
>gi|158339353|ref|YP_001520530.1| transcriptional regulator, TetR family protein [Acaryochloris
marina MBIC11017]
gi|158309594|gb|ABW31211.1| transcriptional regulator, TetR family protein [Acaryochloris
marina MBIC11017]
Length = 193
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 14/159 (8%)
Query: 7 RELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDE-LY 65
R+ ++ A+Q ++ GV+KTTM +IA A TLY YFK+K I A + + +
Sbjct: 9 RDAILQAAKQRLSQYGVKKTTMQEIAKDAGIAVGTLYLYFKNKNQILIAAAEAYVQQHML 68
Query: 66 SSLETAALVSMSPT-KKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLK 124
S L S PT +KL ++ A+++ + +GT A+ R + +++T +E
Sbjct: 69 DS--NQILQSPLPTPEKLKRYLVNRFRAVQDHRL-SGTHAAELARAVMRLKTEMQE---- 121
Query: 125 EEHLICS-----ILDEGVRLNAFSIPDTHITAKILLHSI 158
EE + +L EG++ N F + + K+ L+SI
Sbjct: 122 EESQVVRDNVAFLLKEGIQANVFKVENFEQDLKVFLYSI 160
>gi|46198917|ref|YP_004584.1| transcriptional regulator, tetR family [Thermus thermophilus HB27]
gi|46196541|gb|AAS80957.1| transcriptional regulator, tetR family [Thermus thermophilus HB27]
Length = 203
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 19/209 (9%)
Query: 7 RELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYS 66
R ++ +A LF++ G T+M ++A N +LY + +SK+++ VV + +
Sbjct: 4 RSQILTIAGHLFSRKGYHATSMRELARHLNLQGGSLYAHIQSKEELLLEVVRQAAERFQK 63
Query: 67 SLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWK------VETARKE 120
LE L S P ++ + HL I E + RA F WK +E A K
Sbjct: 64 VLEE--LPSGDPVTRMKALVKGHLRVIAEELP-----RATVFFHEWKHLSPPLLEEA-KA 115
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFER 180
+ E + ++++EGVR F + + + +L ++ + R G ++ E
Sbjct: 116 LRRRYEEGVQAVVEEGVRAGVFRVENVRLATLFVLSALN-----WTYQWYRPDGPLSLEA 170
Query: 181 ISENVEHLIFHGICLSPTVNSGEEEIGSE 209
++E L+ + ++ + E G E
Sbjct: 171 LAEAYAELVLKALGVAASPEGERREKGGE 199
>gi|118473595|ref|YP_890234.1| transcriptional regulator, TetR family protein [Mycobacterium
smegmatis str. MC2 155]
gi|118174882|gb|ABK75778.1| transcriptional regulator, TetR family protein [Mycobacterium
smegmatis str. MC2 155]
Length = 205
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Query: 4 AKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDE 63
A R+ ++ +A +FA G++ TT+ DIAD+A +LY +FKSK+ + V+ LD
Sbjct: 10 ASRRDELLQLAATMFADRGLKATTVRDIADSAGILSGSLYHHFKSKEQMVEEVLRDFLDW 69
Query: 64 LYSSLETAALVSMSPTKKLMHFIYTHLEAIKE-----IVVRNGTLRADFFRDIWKVETAR 118
L+ + + SP +KL EAI+ ++ ++ R VET
Sbjct: 70 LFGRYQQILDTATSPLEKLTGLFMASFEAIEHRHAQVVIYQDEAKRLSDLPQFDFVETRN 129
Query: 119 KEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHL-RHAGTIA 177
KE + + IL EGV +F PD + ++ I+ + ++S + G ++
Sbjct: 130 KE----QRKMWVDILQEGVADGSFR-PDLDV--DLVYRFIR--DTTWVSVRWYKPGGPLS 180
Query: 178 FERISENVEHLIFHGICLS 196
E++ + ++ GI S
Sbjct: 181 AEQVGQQYLAIVLGGITQS 199
>gi|86143487|ref|ZP_01061872.1| transcriptional regulator, TetR family protein [Flavobacterium
sp. MED217]
gi|85829934|gb|EAQ48395.1| transcriptional regulator, TetR family protein [Leeuwenhoekiella
blandensis MED217]
Length = 196
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 6 TRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
+E +I+ + +F K+G +K TM+DIA AANKGR TLY YFK+K +++ V E
Sbjct: 6 VKEHIINSSVAVFKKLGFDKVTMDDIAKAANKGRSTLYYYFKNKHEVFEQVAEME 60
>gi|159036388|ref|YP_001535641.1| transcriptional regulator, TetR family [Salinispora arenicola
CNS-205]
gi|157915223|gb|ABV96650.1| transcriptional regulator, TetR family [Salinispora arenicola
CNS-205]
Length = 227
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
MS A+ RE +I +ARQ+FA+ G + T++ ++A A + +Y +F K+ +Y VV +E
Sbjct: 28 MSAAQRREQLISIARQIFAERGFDATSIEEVASRAKVSKPVVYEHFGGKEGLYAVVVDRE 87
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKE 95
+ L + T AL + P + L T L I+E
Sbjct: 88 VRSLLDRI-TTALTAGHPRELLEQAALTLLTYIEE 121
>gi|163938991|ref|YP_001643875.1| transcriptional regulator, TetR family [Bacillus weihenstephanensis
KBAB4]
gi|163861188|gb|ABY42247.1| transcriptional regulator, TetR family [Bacillus weihenstephanensis
KBAB4]
Length = 190
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 9/196 (4%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M++ + R + I+ A + F+ G + TTM+ +A AN G+ T+YT+FK+K++++ ++
Sbjct: 1 MAIDRKRSI-IEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNL 59
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIW--KVETAR 118
+ E+ E A +S + + +Y+ LE KE + ++ + RD+ +V+
Sbjct: 60 ITEMKQVAENAIRSDISFFENVHRALYSILEFRKEHQLMIKLIQEE--RDMGTKEVQEVM 117
Query: 119 KEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAF 178
++ D++ +I S L+ + S D ITA I+L L V I ++ +
Sbjct: 118 QQVDVEIVSVIQSYLEIAIEKGEISKCDPEITAFIMLR----LYVSLIFDWEKNHEPLEK 173
Query: 179 ERISENVEHLIFHGIC 194
E+ISE E + G+
Sbjct: 174 EKISELFELYLLKGLS 189
>gi|168166305|ref|ZP_02601534.1| transcriptional regulator, TetR family protein [Bacillus cereus
03BB108]
Length = 190
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
M++ + R + ID A + F+ G + TTM+ +A AN G+ T+YT+FK+K++++ ++
Sbjct: 1 MAIDRKRSI-IDAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNL 59
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIW--KVETAR 118
+ E+ E A +S + + +Y+ LE KE + ++ + RD+ +V+
Sbjct: 60 ITEMKQVAENAIRSDISFFENVHRALYSILEFRKEHQLMIKLIQEE--RDMGTKEVQEVM 117
Query: 119 KEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAF 178
++ D++ +I S L + S D ITA I+L L V I ++ +
Sbjct: 118 QQVDVEIVSVIQSYLKIAIEKGEISKCDPEITAFIMLR----LYVSLIFDWEKNHEPLEK 173
Query: 179 ERISENVEHLIFHGIC 194
E+I+E E + G+
Sbjct: 174 EKIAELFELYLLKGLS 189
>gi|89900852|ref|YP_523323.1| transcriptional regulator, TetR family [Rhodoferax ferrireducens
T118]
gi|89345589|gb|ABD69792.1| transcriptional regulator, TetR family [Rhodoferax ferrireducens
T118]
Length = 216
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 6 TRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELY 65
TR ++D A +FA+ GV +T+++DIA+AA R +Y +FK+K D++ A++ + L
Sbjct: 12 TRNRLLDAAEHVFAEKGVSRTSLHDIAEAAGVSRGAIYWHFKNKADLFNAMMERTTLPLE 71
Query: 66 SSL-ETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWKVETARKEFDLK 124
+L + + P +L I L+ +++I + T R F KVE + +K
Sbjct: 72 DALHQIGDDPELDPLHELQRAI---LDTMRKITLDERTRRV-FEVATLKVEYVDELLAVK 127
Query: 125 EEHLICSILDEGV 137
HL C + EGV
Sbjct: 128 ARHLQCYV--EGV 138
>gi|145593345|ref|YP_001157642.1| regulatory protein, TetR [Salinispora tropica CNB-440]
gi|145302682|gb|ABP53264.1| regulatory protein, TetR [Salinispora tropica CNB-440]
Length = 226
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
MS A+ RE +I ARQLFA+ G + T++ ++A A + +Y +F K+ +Y VV +E
Sbjct: 27 MSAAQRREQLISTARQLFAERGFDATSIEEVAARARVSKPVVYEHFGGKEGLYAVVVDRE 86
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKE 95
+ L + T AL + P + L T L I+E
Sbjct: 87 VRSLLERI-TTALTAGHPRELLEQAALTLLTYIEE 120
>gi|134100119|ref|YP_001105780.1| TetR-family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133912742|emb|CAM02855.1| TetR-family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 245
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 5 KTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDEL 64
+ R + A LFA G E TT++ IADAA GRRT + YF+SK+D+ F + L E+
Sbjct: 22 RVRSALALAAMDLFASQGFEATTVDQIADAAGVGRRTFFRYFRSKEDVVFPGHDERLAEV 81
Query: 65 YSSLETA 71
L+ A
Sbjct: 82 VELLDAA 88
>gi|55980942|ref|YP_144239.1| transcriptional regulator, TetR family [Thermus thermophilus HB8]
gi|55772355|dbj|BAD70796.1| transcriptional regulator, TetR family [Thermus thermophilus HB8]
Length = 203
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 21/199 (10%)
Query: 7 RELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYS 66
R ++ +A LF++ G T+M ++A N +LY + +SK+++ VV + +
Sbjct: 4 RSQILTIAGHLFSQRGYHATSMRELARHLNLQGGSLYAHIQSKEELLLEVVRQAAERFQK 63
Query: 67 SLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTLRADFFRDIWK------VETARKE 120
LE L S P ++ + HL I E + RA F WK +E A K
Sbjct: 64 VLEE--LPSGDPVTRMKALVKGHLRVIAEELP-----RATVFFHEWKHLSPPLLEEA-KA 115
Query: 121 FDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYISGHLRHAGTIAFER 180
+ E + ++++EGVR F + + + +L ++ + R G ++ E
Sbjct: 116 LRRRYEEGVQAVVEEGVRAGVFRVENVRLATLFVLSALN-----WTYQWYRPDGPLSLEA 170
Query: 181 ISENVEHLIFH--GICLSP 197
++E L+ G+ SP
Sbjct: 171 LAEAYAELVLKALGVAASP 189
>gi|77979365|ref|ZP_00834784.1| COG1309: Transcriptional regulator [Yersinia intermedia ATCC 29909]
Length = 218
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 5 KTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIY---FAVVHKEL 61
+TR+ ++D A + F+ GV T++ DIA AA R +Y +FK+K D++ + + ++
Sbjct: 11 ETRQQILDAAVREFSAHGVSGTSLTDIAAAAGVTRGAIYWHFKNKVDLFNEVWELSESKI 70
Query: 62 DELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIVVRNGTL-----RADFFRDIWKVET 116
D+L LE A +P + L + L + +E R + + +F ++ V
Sbjct: 71 DQL--ELEYQAKYPDNPLRILREILIYVLVSTREDCRRRALMEIVFHKCEFVGEMTSVHD 128
Query: 117 ARKEFDLKEEHLICSILDEGVRLNAFSIP-DTHITAKILLHSIKGL 161
ARK DL I S+L + N + DT A I+ I GL
Sbjct: 129 ARKVLDLASYERIESVLQGCINANQLPVNLDTRQAAIIMRAYITGL 174
>gi|24379070|ref|NP_721025.1| putative transcriptional regulator [Streptococcus mutans UA159]
gi|24376968|gb|AAN58331.1|AE014903_7 putative transcriptional regulator [Streptococcus mutans UA159]
Length = 213
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 7 RELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYS 66
R+ + D A LF G+ TTM++IA A + TLY YF++K++I+F++V+K LY
Sbjct: 13 RKNISDAANTLFISKGITDTTMDNIAKLAGYSKATLYVYFENKEEIFFSLVYKHAKWLYE 72
Query: 67 SLETAALVSMSPTKK 81
++E ++ + P+ +
Sbjct: 73 TIE--KIIQIQPSTQ 85
>gi|92116523|ref|YP_576252.1| transcriptional regulator, TetR family [Nitrobacter hamburgensis
X14]
gi|91799417|gb|ABE61792.1| transcriptional regulator, TetR family [Nitrobacter hamburgensis
X14]
Length = 199
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 10 MIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKELDELYSSLE 69
++D A + A +GV+K +M+ IA A + LY Y+ SK + FA++ L+EL S LE
Sbjct: 16 ILDYAANVLATLGVDKASMSQIAGQARISKALLYHYYPSKDALVFAIIFNHLEELDSDLE 75
Query: 70 TAALVSMSPTKKLMHFIYTHLE 91
+ +M P+ +L + LE
Sbjct: 76 VSDDPAMEPSARLKFLVGVVLE 97
>gi|169188655|ref|ZP_02848717.1| transcriptional regulator, TetR family [Paenibacillus sp. JDR-2]
gi|169004649|gb|EDS51506.1| transcriptional regulator, TetR family [Paenibacillus sp. JDR-2]
Length = 198
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 27/206 (13%)
Query: 1 MSVAKTRELMIDVARQLFAKIGVEKTTMNDIADAANKGRRTLYTYFKSKKDIYFAVVHKE 60
MS+ + + L++ A Q FA+ G + TTM+ ++ A+ G+ T+YT+FK+K++++ A+++K
Sbjct: 1 MSIDR-KALILKAATQSFAQFGYKATTMDLVSKIASVGKGTIYTFFKTKEELFEAILNKA 59
Query: 61 LDELYSSLETAALVSMSPTKKLMHFIYTHLEAIKEIV------------VRN-GTLRADF 107
EL ++ + S + +H +++ L++I E VR+ GT +A
Sbjct: 60 EVELKEAMNCGFDMEGSD-RSFIHSVFSLLDSILEFRSDHELFVKLAQEVRDIGTAQA-- 116
Query: 108 FRDIWKVETARKEFDLKEEHLICSILDEGVRLNAFSIPDTHITAKILLHSIKGLEVPYIS 167
I ++E EF LK++ L+ + DT IT+ ++ GL +
Sbjct: 117 LEGIRRMELFGLEF-LKQK------LELAIEKGEVRECDTTITSYMIFRLYLGLATEW-- 167
Query: 168 GHLRHAGTIAFERISENVEHLIFHGI 193
+ H+ + E+I EN+ LI GI
Sbjct: 168 -NKSHSEPLTKEQIKENIAMLITKGI 192
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 884,634,002
Number of sequences in database: 2,620,852
Database: /apps/blastdb/nr.01
Posted date: May 10, 2008 4:52 AM
Number of letters in database: 976,814,986
Number of sequences in database: 2,761,530
Database: /apps/blastdb/nr.02
Posted date: May 10, 2008 4:46 AM
Number of letters in database: 360,829,861
Number of sequences in database: 1,132,722
Lambda K H
0.321 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 833,761,235
Number of Sequences: 6515104
Number of extensions: 32370040
Number of successful extensions: 81698
Number of sequences better than 1.0e-04: 88
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 81655
Number of HSP's gapped (non-prelim): 89
length of query: 211
length of database: 2,222,278,849
effective HSP length: 128
effective length of query: 83
effective length of database: 1,388,345,537
effective search space: 115232679571
effective search space used: 115232679571
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 118 (50.1 bits)