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UniSTS:43298 Links
D20S544E
Homo sapiens chromosome 20, locus N-PAC
Mus musculus locus 3930401K13Rik
Pan troglodytes locus LOC748328
Rattus norvegicus locus N-pac

Found by e-PCR in sequences from Homo sapiens, Mus musculus, Pan troglodytes, Rattus norvegicus and Sus scrofa.

Primer InformationHelp

Forward primer:GACCAGAAGTGCCAAAATATCC
Reverse primer:GTTGACCGCATCACCCAG
PCR product size:108 (bp), Homo sapiens

   Homo sapiens
Name: D20S544E
Also known as: GDB:441153 stSG3027
Polymorphism info:  

Cross References Help
Gene GeneID:84656
 Symbol:N-PAC
 Description:cytokine-like nuclear factor n-pac
 Position:16p13.3
UniGeneHs.387255 Cytokine-like nuclear factor n-pac

Mapping InformationHelp
View all results using the Map Viewer
 
stSG3027 NCBI RH Map: Chr 20 Map Viewer
  Position: 507.8 (cR)
  Lod score: 2.19
 
stSG3027 GeneMap99-GB4 Map: Chr 20 Map Viewer
  Position: 300.28 (cR3000)
  Lod score: 0.77
  Reference Interval: D20S109-D20S196

Electronic PCR results Help
RefSeq mRNA (1)
NM_032569.2 1465 .. 1572 (108 bp)  
 
mRNA (5 of 7)[Show All Hits]
AF326966.1 1429 .. 1536 (108 bp)  
BC003693.1 1358 .. 1465 (108 bp)  
BC032855.1 1475 .. 1582 (108 bp)  
AF244907.1 1465 .. 1572 (108 bp)  
AY352585.1 1447 .. 1554 (108 bp)  
 
Genomic (1)
AY399174.1 1396 .. 1503 (108 bp)  
 
ESTs (5 of 18)[Show All Hits]
Z25224.1 208 .. 315 (108 bp)  
BE781605.1 173 .. 280 (108 bp)  
BE792453.1 160 .. 267 (108 bp)  
BE795928.1 550 .. 658 (109 bp)  
BE867445.1 157 .. 264 (108 bp)  
 

   Mus musculus
 
Polymorphism info:  

Cross References Help
Gene GeneID:74022
 Symbol:3930401K13Rik
 Description:RIKEN cDNA 3930401K13 gene
 Position:16 A1|16 3.4 cM
UniGeneMm.21652 RIKEN cDNA 3930401K13 gene


Electronic PCR results Help
RefSeq mRNA (2)
NM_028720.2 1493 .. 1601 (109 bp)  
NM_001079814.1 1511 .. 1619 (109 bp)  
 
mRNA (1)
BC006893.1 1427 .. 1535 (109 bp)  
 
Genomic (1)
AY399176.1 1393 .. 1501 (109 bp)  
 
ESTs (5 of 27)[Show All Hits]
W33698.1 35 .. 143 (109 bp)  
W44171.1 35 .. 143 (109 bp)  
AW412283.1 29 .. 137 (109 bp)  
BF147267.1 63 .. 171 (109 bp)  
BF461672.1 197 .. 305 (109 bp)  
 

   Pan troglodytes
 
Polymorphism info:  

Cross References Help
Gene GeneID:748328
 Symbol:LOC748328
 Description:similar to MGC107852 protein
 Position: 


Electronic PCR results Help
RefSeq mRNA (5 of 6)[Show All Hits]
XM_001169753.1 1506 .. 1613 (108 bp)  
XM_001169777.1 1524 .. 1631 (108 bp)  
XM_001169731.1 1437 .. 1544 (108 bp)  
XM_001169707.1 1236 .. 1343 (108 bp)  
XM_001169661.1 1185 .. 1292 (108 bp)  
 
Genomic (1)
AY399175.1 1358 .. 1465 (108 bp)  
 

   Rattus norvegicus
 
Polymorphism info:  

Cross References Help
Gene GeneID:360477
 Symbol:N-pac
 Description:cytokine-like nuclear factor n-pac
 Position:10q12
UniGeneRn.2639 Similar to RIKEN cDNA 3930401K13


Electronic PCR results Help
RefSeq mRNA (1)
NM_001007800.1 1444 .. 1551 (108 bp)  
 
mRNA (1)
BC085931.1 1455 .. 1562 (108 bp)  
 
ESTs (4)
CB739205.1 238 .. 349 (112 bp)  
CK474259.1 21 .. 128 (108 bp)  
DY310348.1 251 .. 358 (108 bp)  
EV764397.1 119 .. 226 (108 bp)  
 

   Sus scrofa
 
Polymorphism info:  

Cross References Help
UniGeneSsc.18242 Transcribed locus, strongly similar to NP_001006572.1 similar to cytokine-li...


Electronic PCR results Help
ESTs (1)
BI184710.1 434 .. 541 (108 bp)  
 

 

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