Reference SNP(refSNP) Cluster Report: rs4696744

Reference SNP(refSNP) Cluster Report: rs4696744

refSNP ID: rs4696744
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	111/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_032432.3:c.763+216G>A
NT_006051.17:g.4149922C>T

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss44500943 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4696744 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss6468967	WI_SSAHASNP\|NT_006307.12_175946	fwd/B	C/T	ggctcggcccttttcctttcttgctggtct	gggctcgctgagatcattggacagacaagg	02/12/03	10/10/03	111	Genomic	unknown
ss17801470	CSHL-HAPMAP\|CSHL-HuCC-200402.chr4.NT_006307.15_175946	fwd/B	C/T	ggctcggcccttttcctttcttgctggtct	gggctcgctgagatcattggacagacaagg	02/19/04	03/04/04	120	Genomic	unknown
ss22051840	SSAHASNP\|WGSA-200403-chr4.chr4.NT_006307.15_175946	fwd/B	C/T	ggctcggcccttttcctttcttgctggtct	gggctcgctgagatcattggacagacaagg	03/20/04	03/20/04	121	Genomic	unknown
ss44500943	ABI\|hCV11283723	fwd/B	C/T	ggctcggcccttttcctttcttgctggtct	gggctcgctgagatcattggacagacaagg	07/19/05	07/19/05	126	Genomic	unknown

Fasta sequence (Legend)

 GGGGCTGGCT CTTCCCTTGC TCCTAGAAGA AAGCCTCGGC TGCTGCCAGT GACCCTCAGT
 ACCTCATTAC CAACCTCCTT TGTGGACAGA GGGGTTGCAG CAGGCTGGGG TGGCTGGGGC
 GGGAAACACC TAAAACTCCT AACTTGGACT CCCTGAGCTG GGGCGGCTTT CTAGAAGGGG
 CCTAAAGTGG CGACGGATGT GATCAGGCCG TATTTGTTTA AGCTTTGCTA CTTGGAGCCA
 AATAGCCAGC ACTTCTGGGT GCTGGTCTTT GGCTCGGCCC TTTTCCTTTC TTGCTGGTCT
 Y
 GGGCTCGCTG AGATCATTGG ACAGACAAGG CAGGCTGACG AGGCTGGCCT GGCACGTGCC
 ACCGCCCTGC CCTGCCGGCT CCCCGCTGTG GCTGGGCTGC TCGTGACCTA GCGAGATGAC
 ACTGTCACCA ACCTGTTCAC ACCCAGCATG TGTGTGGACC TCGAAGAGGG TAGTTCCTTG
 CTCTAGGGGA CCAAACAACA CATTTTAATT CATACCTTGA AGATACATCT CTTCGCCTTC
 TGCAAACATC TGGCCGCACC TGACACATAG CGCGCAGGAA GGGTGGTAGT GCTTCTCTCC

GeneView

GeneView via analysis of contig annotation: ABLIM2 actin binding LIM protein family, member 2

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_006051->NM_032432

function

HuRef

NW_001838899->NM_032432

function

Celera

NW_921918->NM_032432

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_006051->NM_032432->NP_115808	4149922	reverse	intron

HuRef	NW_001838899->NM_032432->NP_115808	194874	reverse	intron

Celera	NW_921918->NM_032432->NP_115808	7962186	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs4696744 maps exactly once on NCBI human chromosome 4

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
4	NW_921918.1	7962186	7962186	plus	C	alt_assembly_1	Celera	Celera	view	300
4	NW_001838899.1	194874	7982226	plus	T	alt_assembly_8	HuRef	HuRef	view	300
4	NT_006051.17	4149922	8113378	plus	C	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_006307

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .