Reference SNP(refSNP) Cluster Report: rs41298422

Reference SNP(refSNP) Cluster Report: rs41298422

refSNP ID: rs41298422
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	127/129
Map to Genome Build:	36.3
Citation:	PubMed

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NT_035113.6:g.576375C>G

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss61570833 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs41298422 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss61570833	RIKENBSIMPS\|DRD4-01		fwd/	C/G	agaaaatacctctcaggtcacaggtcaccc	tctttggtgaagagtccatagaattctctg	07/06/06	07/06/06	127	Genomic			unknown

Fasta sequence (Legend)

 TGCGCCGCCT GGGGTCCCAC AGAGTGGTGC CCCCTTTTAG TGTCTTCTAG GCCCCTTAGT
 GACAGACTAC AGAAAATACC TCTCAGGTCA CAGGTCACCC
 S
 TCTTTGGTGA AGAGTCCATA GAATTCTCTG CTGCGCTTTG CAAGCACTTT CTCTTCTGCA
 CGTTTGGAAC CTACCCCGGC CTGTCGTGTC TTTCTCCTGG

GeneView

GeneView via analysis of contig annotation: DRD4 dopamine receptor D4

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_035113->NM_000797

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_035113->NM_000797->NP_000788	576375	forward	5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs41298422 maps exactly once on NCBI human chromosome 11

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
11	NW_001838016.1	277438	451584	plus	C	alt_assembly_8	HuRef	HuRef	view	100
11	NT_035113.6	576375	626375	plus	C	ref_assembly	reference	reference	view	100
11	NW_924962.1	281248	701492	plus	C	alt_assembly_1	Celera	Celera	view	100

NCBI Resource Links

Submitter-Referenced
GenBank
AF073502 AF073506

dbSNP Blast Analysis
GenBank HTGS Finished:
AP006284.2

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .