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Cancer Genome Anatomy Project |
| NCI > CGAP > GAI > SNP Maps > Gene Viewer |
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To view protein sequence alignments, statistics about how SNPs affect the fit of protein domains to motif models, and three-dimensional structures of motifs (if known), click here. mRNA: BC000594.2 UniGene: Hs.626637 (build 217) [ CGAP Gene Info ] [ CGAP SNP Summary ] Description: Lysyl oxidase-related protein (WS9-14) Gene symbol: LOXL2 GeneID: 4017 |
| SNP ID | CGAP SNP? | Nucleotide | cds SNP? | Status | Primer Set |
| CGAP-C-2485196 | yes | 329 | Pro40Pro | candidate | - |
| ss3237424 | no | 329 | Pro40Pro | - | - |
| ss17955977 | no | 329 | Pro40Pro | - | - |
| ss23498909 | no | 329 | Pro40Pro | - | - |
| CGAP-C-2485198 | yes | 451 | Gly81Ala | candidate | - |
| ss1551003 | no | 515 | Tyr102Tyr | - | - |
| CGAP-C-2485204 | yes | 515 | Tyr102Tyr | candidate | - |
| ss3237423 | no | 515 | Tyr102Tyr | - | - |
| ss4922018 | no | 620 | Ala137Ala | - | - |
| ss4922017 | no | 687 | Asp160Asn | - | - |
| CGAP-C-2485203 | yes | 840 | Gly211Cys | candidate | - |
| ss24039901 | no | 1094 | Leu295Leu | - | - |
| ss6731808 | no | 1133 | Ser308Arg | - | - |
| ss1472802 | no | 1148 | Ser313Ser | - | - |
| ss1526428 | no | 1148 | Ser313Ser | - | - |
| CGAP-C-2485202 | yes | 1148 | Ser313Ser | validated | 456270 |
| ss3237417 | no | 1148 | Ser313Ser | - | - |
| ss4416791 | no | 1148 | Ser313Ser | - | - |
| ss24039896 | no | 1148 | Ser313Ser | - | - |
| ss3237418 | no | 1163 | Ala318Ala | - | - |
| ss24039890 | no | 1163 | Ala318Ala | - | - |
| ss1472801 | no | 1173 | Glu322Lys | - | - |
| ss1526441 | no | 1247 | Glu346Glu | - | - |
| CGAP-C-2485201 | yes | 1247 | Glu346Glu | validated | 456271 |
| ss4416801 | no | 1247 | Glu346Glu | - | - |
| ss4922015 | no | 1247 | Glu346Glu | - | - |
| ss23498384 | no | 1247 | Glu346Glu | - | - |
| ss24787602 | no | 1247 | Glu346Glu | - | - |
| ss6237679 | no | 1285 | Ser359Trp | - | - |
| ss2425661 | no | 1719 | Val504Leu | - | - |
| CGAP-C-2485192 | yes | 1719 | Val504Leu | candidate | - |
| ss4922014 | no | 1808 | Gly533Gly | - | - |
| CGAP-C-2485200 | yes | 1809 | Gly534Arg | candidate | - |
| CGAP-C-2485199 | yes | 1826 | Ala539Ala | candidate | - |
| ss11122336 | no | 1826 | Ala539Ala | - | - |
| ss14351121 | no | 1826 | Ala539Ala | - | - |
| ss23498130 | no | 1826 | Ala539Ala | - | - |
| ss1551011 | no | 1917 | Leu570Met | - | - |
| ss3237414 | no | 1917 | Leu570Met | - | - |
| ss23498008 | no | 1917 | Leu570Met | - | - |
| CGAP-C-2485193 | yes | 1970 | Thr587Thr | candidate | - |
| CGAP-C-2485207 | yes | 2714 | no | validated | 227908 |
| ss17237325 | no | 2725 | no | - | - |
| CGAP-C-2485208 | yes | 2753 | no | candidate | - |
| ss3219239 | no | 2753 | no | - | - |
| ss3219238 | no | 2960 | no | - | - |
| ss24039537 | no | 2960 | no | - | - |
| ss1526460 | no | 3101 | no | - | - |
| CGAP-C-2485209 | yes | 3101 | no | candidate | - |
| ss3219237 | no | 3101 | no | - | - |
| ss4416817 | no | 3101 | no | - | - |
| ss5747595 | no | 3101 | no | - | - |
| ss1526462 | no | 3108 | no | - | - |
| CGAP-C-2485206 | yes | 3108 | no | candidate | - |
| ss3219236 | no | 3108 | no | - | - |
| ss3237416 | no | 3108 | Leu295Leu | - | - |
| ss4416819 | no | 3108 | no | - | - |
| ss6234939 | no | 3108 | no | - | - |
| ss24817026 | no | 3108 | no | - | - |
| ss1526474 | no | 3209 | no | - | - |
| CGAP-C-2485195 | yes | 3209 | no | candidate | - |
| ss3219235 | no | 3209 | no | - | - |
| ss4416828 | no | 3209 | no | - | - |
| ss23497792 | no | 3209 | no | - | - |
Comments to: Bob Clifford ( clifforr@mail.nih.gov ) Last modified: 27 October 2008 |